BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048534
(91 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|351724407|ref|NP_001235265.1| uncharacterized protein LOC100527636 [Glycine max]
gi|255632824|gb|ACU16765.1| unknown [Glycine max]
Length = 92
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/76 (93%), Positives = 74/76 (97%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
ITDDQINDLVSKLQQLLPE+R+ RSDKVSA KVLQETCNYIRSLHREVDDLSERLSELLA
Sbjct: 17 ITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLA 76
Query: 76 TTDTAQAAIIRSLLMQ 91
TTDTAQAAIIR+LLMQ
Sbjct: 77 TTDTAQAAIIRNLLMQ 92
>gi|255540973|ref|XP_002511551.1| transcription regulator, putative [Ricinus communis]
gi|223550666|gb|EEF52153.1| transcription regulator, putative [Ricinus communis]
Length = 91
Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/76 (93%), Positives = 73/76 (96%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
ITDDQI DLVSKLQQLLPE+RN RSDKVSA KVLQETCNYIRSLHREVDDLSERLSELLA
Sbjct: 16 ITDDQILDLVSKLQQLLPEIRNRRSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLA 75
Query: 76 TTDTAQAAIIRSLLMQ 91
TTDTAQAAIIR+LLMQ
Sbjct: 76 TTDTAQAAIIRNLLMQ 91
>gi|388496106|gb|AFK36119.1| unknown [Lotus japonicus]
Length = 92
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/76 (92%), Positives = 73/76 (96%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
ITDDQI+DLVSKLQQLLPE+R RSDKVSA KVLQETCNYIRSLHREVDDLSERLSELLA
Sbjct: 17 ITDDQIHDLVSKLQQLLPEIRERRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLA 76
Query: 76 TTDTAQAAIIRSLLMQ 91
TTDTAQAAIIR+LLMQ
Sbjct: 77 TTDTAQAAIIRNLLMQ 92
>gi|449440772|ref|XP_004138158.1| PREDICTED: transcription factor bHLH135-like [Cucumis sativus]
gi|449477285|ref|XP_004154981.1| PREDICTED: transcription factor bHLH135-like [Cucumis sativus]
Length = 92
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/76 (90%), Positives = 74/76 (97%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
ITDDQINDLVSKLQQLLPE+R+ +SDKVSA KVLQETCNYIR+LHREVDDLSERLSELLA
Sbjct: 17 ITDDQINDLVSKLQQLLPEIRHRQSDKVSASKVLQETCNYIRNLHREVDDLSERLSELLA 76
Query: 76 TTDTAQAAIIRSLLMQ 91
T+DTAQAAIIRSLLMQ
Sbjct: 77 TSDTAQAAIIRSLLMQ 92
>gi|356516770|ref|XP_003527066.1| PREDICTED: transcription factor bHLH135-like [Glycine max]
Length = 92
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/76 (90%), Positives = 72/76 (94%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
ITDDQINDLVSKLQQLLPE+R+ RSDKVSA KVLQETCNYIRSLHREV DLSERLSELL
Sbjct: 17 ITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQETCNYIRSLHREVGDLSERLSELLD 76
Query: 76 TTDTAQAAIIRSLLMQ 91
TTDTAQAAIIR+LLMQ
Sbjct: 77 TTDTAQAAIIRNLLMQ 92
>gi|225456723|ref|XP_002274840.1| PREDICTED: transcription factor bHLH135 [Vitis vinifera]
gi|297734002|emb|CBI15249.3| unnamed protein product [Vitis vinifera]
Length = 91
Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/76 (89%), Positives = 71/76 (93%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
ITDDQINDLVSKLQQLLPE+R SDKVSA KVLQETCNYIRSL+REVDDLSERLSELLA
Sbjct: 16 ITDDQINDLVSKLQQLLPEIRGRHSDKVSAAKVLQETCNYIRSLNREVDDLSERLSELLA 75
Query: 76 TTDTAQAAIIRSLLMQ 91
TTD+AQAAIIRSLL Q
Sbjct: 76 TTDSAQAAIIRSLLTQ 91
>gi|388510854|gb|AFK43493.1| unknown [Medicago truncatula]
Length = 92
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/76 (88%), Positives = 73/76 (96%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
ITDDQI+DLVSKLQQLLPE+RN SDKVSA +VLQETCNYIR+L+REVDDLSERLSELLA
Sbjct: 17 ITDDQIHDLVSKLQQLLPEIRNRSSDKVSASRVLQETCNYIRNLNREVDDLSERLSELLA 76
Query: 76 TTDTAQAAIIRSLLMQ 91
TTDTAQAAIIR+LLMQ
Sbjct: 77 TTDTAQAAIIRNLLMQ 92
>gi|147810883|emb|CAN67278.1| hypothetical protein VITISV_022020 [Vitis vinifera]
Length = 91
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/76 (89%), Positives = 70/76 (92%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
ITDDQINDLVSKLQQLLPE+R SDKVSA KVLQETCNYIRSL+REVDDLSERLSELLA
Sbjct: 16 ITDDQINDLVSKLQQLLPEIRGRHSDKVSAAKVLQETCNYIRSLNREVDDLSERLSELLA 75
Query: 76 TTDTAQAAIIRSLLMQ 91
TTD AQAAIIRSLL Q
Sbjct: 76 TTDXAQAAIIRSLLTQ 91
>gi|22331645|ref|NP_190355.2| protein banquo 3 [Arabidopsis thaliana]
gi|332644800|gb|AEE78321.1| protein banquo 3 [Arabidopsis thaliana]
Length = 92
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/92 (75%), Positives = 83/92 (90%), Gaps = 1/92 (1%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNR-SDKVSAGKVLQETCNYIRSL 59
MSSR+SRSRQ+G+S ITD+QINDLV +L +LLPEL NNR S KVSA +VLQETC+YIR+L
Sbjct: 1 MSSRKSRSRQTGASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNL 60
Query: 60 HREVDDLSERLSELLATTDTAQAAIIRSLLMQ 91
+EVDDLSERLS+LL +TD+AQAA+IRSLLMQ
Sbjct: 61 SKEVDDLSERLSQLLESTDSAQAALIRSLLMQ 92
>gi|356550791|ref|XP_003543767.1| PREDICTED: transcription factor bHLH135-like [Glycine max]
Length = 91
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 82/91 (90%), Gaps = 3/91 (3%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLH 60
MSSRRSR +QS S+RI+DDQI DLVSKL+QL+PE+R+ RSDKVSA KVLQETCNYIRSLH
Sbjct: 1 MSSRRSR-QQSASTRISDDQIIDLVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRSLH 59
Query: 61 REVDDLSERLSELLAT--TDTAQAAIIRSLL 89
REVDDLSERLS+LLAT D+ +AAIIRSL+
Sbjct: 60 REVDDLSERLSQLLATIDADSPEAAIIRSLI 90
>gi|225425746|ref|XP_002276549.1| PREDICTED: transcription factor bHLH135 [Vitis vinifera]
gi|147833933|emb|CAN68305.1| hypothetical protein VITISV_041983 [Vitis vinifera]
gi|296086398|emb|CBI31987.3| unnamed protein product [Vitis vinifera]
Length = 92
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/83 (81%), Positives = 74/83 (89%), Gaps = 2/83 (2%)
Query: 10 QSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSER 69
Q G SRI+DDQI DLVSKLQQL+PE+RN RSDKVSA KVLQETCNYIR+LHREVDDLS+R
Sbjct: 10 QPGVSRISDDQIADLVSKLQQLIPEIRNRRSDKVSASKVLQETCNYIRNLHREVDDLSDR 69
Query: 70 LSELLATTDT--AQAAIIRSLLM 90
LS LLA+TDT QAAIIRSLLM
Sbjct: 70 LSALLASTDTDSDQAAIIRSLLM 92
>gi|356531780|ref|XP_003534454.1| PREDICTED: transcription factor bHLH135-like [Glycine max]
Length = 92
Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 71/93 (76%), Positives = 81/93 (87%), Gaps = 3/93 (3%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLH 60
MSSRRSR + SGS+RI+DDQI +LVSKL+QL+PE+RN RSDKVSA KVLQETCNYIRSLH
Sbjct: 1 MSSRRSR-QHSGSTRISDDQIIELVSKLRQLVPEIRNRRSDKVSASKVLQETCNYIRSLH 59
Query: 61 REVDDLSERLSELLAT--TDTAQAAIIRSLLMQ 91
REV DLSERLS+LL T D+A+A IIRSLL Q
Sbjct: 60 REVSDLSERLSQLLTTIDADSAEAGIIRSLLNQ 92
>gi|449469460|ref|XP_004152438.1| PREDICTED: transcription factor bHLH135-like [Cucumis sativus]
gi|449524000|ref|XP_004169011.1| PREDICTED: transcription factor bHLH135-like [Cucumis sativus]
Length = 90
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/74 (87%), Positives = 68/74 (91%)
Query: 18 DDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATT 77
D+QI DLV KLQQLLPE+RN SDKVSA KVLQETCNYIRSLHREVDDLSERLSELLAT+
Sbjct: 17 DEQITDLVHKLQQLLPEIRNRHSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATS 76
Query: 78 DTAQAAIIRSLLMQ 91
DTAQAAIIRSLL Q
Sbjct: 77 DTAQAAIIRSLLTQ 90
>gi|351726902|ref|NP_001237910.1| uncharacterized protein LOC100305611 [Glycine max]
gi|255626077|gb|ACU13383.1| unknown [Glycine max]
Length = 91
Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/91 (76%), Positives = 82/91 (90%), Gaps = 3/91 (3%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLH 60
MSSRRSR +QS S+RI+DDQI DLVSKL+QL+PE+R+ RSDKVSA KVLQETCNYIRSLH
Sbjct: 1 MSSRRSR-QQSASTRISDDQIIDLVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRSLH 59
Query: 61 REVDDLSERLSELLAT--TDTAQAAIIRSLL 89
REV+DLSERLS+LLAT D+ +AAIIRSL+
Sbjct: 60 REVNDLSERLSQLLATIDADSPEAAIIRSLI 90
>gi|359806909|ref|NP_001241066.1| uncharacterized protein LOC100784537 [Glycine max]
gi|255637698|gb|ACU19172.1| unknown [Glycine max]
Length = 92
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/93 (75%), Positives = 80/93 (86%), Gaps = 3/93 (3%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLH 60
MSSRRSR + SGS+RI+DDQI +LVSKL+QL+PE+RN RSDKVSA KVLQETCNYIR LH
Sbjct: 1 MSSRRSR-QHSGSTRISDDQIIELVSKLRQLVPEIRNRRSDKVSASKVLQETCNYIRGLH 59
Query: 61 REVDDLSERLSELLAT--TDTAQAAIIRSLLMQ 91
REV DLSERLS+LL T D+A+A IIRSLL Q
Sbjct: 60 REVSDLSERLSQLLTTIDADSAEAGIIRSLLNQ 92
>gi|224121520|ref|XP_002318605.1| predicted protein [Populus trichocarpa]
gi|222859278|gb|EEE96825.1| predicted protein [Populus trichocarpa]
Length = 91
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/74 (86%), Positives = 69/74 (93%)
Query: 18 DDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATT 77
DDQI DLV+KLQQLLPE+RN RSDKVSA K+LQETCNYI+SLHREV DLSERLSELL TT
Sbjct: 18 DDQILDLVTKLQQLLPEIRNRRSDKVSAAKILQETCNYIKSLHREVGDLSERLSELLETT 77
Query: 78 DTAQAAIIRSLLMQ 91
DTAQAAIIR+LLMQ
Sbjct: 78 DTAQAAIIRNLLMQ 91
>gi|255552902|ref|XP_002517494.1| transcription regulator, putative [Ricinus communis]
gi|223543505|gb|EEF45036.1| transcription regulator, putative [Ricinus communis]
Length = 90
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/92 (75%), Positives = 76/92 (82%), Gaps = 4/92 (4%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLH 60
MS RRSR Q RITDDQI DLVSKL+QLLPE+R R DKVSA KVLQETCNYIR+LH
Sbjct: 1 MSGRRSR--QPSVPRITDDQIIDLVSKLRQLLPEIRQRRPDKVSASKVLQETCNYIRNLH 58
Query: 61 REVDDLSERLSELLAT--TDTAQAAIIRSLLM 90
REVDDLSERLS+LLAT D+ +AAIIRSL+M
Sbjct: 59 REVDDLSERLSQLLATIDADSPEAAIIRSLIM 90
>gi|356526903|ref|XP_003532055.1| PREDICTED: transcription factor bHLH135-like [Glycine max]
Length = 93
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/84 (80%), Positives = 75/84 (89%), Gaps = 3/84 (3%)
Query: 10 QSG-SSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
QSG S+ ITD QI DL+SKLQQL+PELR RSDKVSA KVLQETCNYI+SLHREVDDLS+
Sbjct: 10 QSGVSTEITDAQITDLISKLQQLIPELRARRSDKVSASKVLQETCNYIKSLHREVDDLSD 69
Query: 69 RLSELLATTD--TAQAAIIRSLLM 90
RLS+LLATTD +AQAAIIRSLLM
Sbjct: 70 RLSQLLATTDSNSAQAAIIRSLLM 93
>gi|224124054|ref|XP_002330093.1| predicted protein [Populus trichocarpa]
gi|222871227|gb|EEF08358.1| predicted protein [Populus trichocarpa]
Length = 91
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 68/76 (89%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
I DDQI DLV+KLQQLLPE RN RS+KVSA K LQETCNYI+SLHREVDDLSERLSELL
Sbjct: 16 INDDQILDLVTKLQQLLPETRNRRSEKVSAAKALQETCNYIKSLHREVDDLSERLSELLE 75
Query: 76 TTDTAQAAIIRSLLMQ 91
TTDT QAAIIR+LLMQ
Sbjct: 76 TTDTTQAAIIRNLLMQ 91
>gi|357501781|ref|XP_003621179.1| Transcription factor style2.1 [Medicago truncatula]
gi|355496194|gb|AES77397.1| Transcription factor style2.1 [Medicago truncatula]
Length = 93
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/93 (73%), Positives = 80/93 (86%), Gaps = 2/93 (2%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLH 60
MSSRRSR + GS+RI+DDQI DLV KL+QL+PE+RN RSDKV A KVLQETCNYIR+L
Sbjct: 1 MSSRRSRQQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDKVPASKVLQETCNYIRNLQ 60
Query: 61 REVDDLSERLSELLAT--TDTAQAAIIRSLLMQ 91
REVDDLS RLS+LLAT +D+A+A+IIRSLL Q
Sbjct: 61 REVDDLSLRLSQLLATIDSDSAEASIIRSLLNQ 93
>gi|356500403|ref|XP_003519021.1| PREDICTED: transcription factor bHLH135-like [Glycine max]
Length = 93
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/84 (80%), Positives = 74/84 (88%), Gaps = 3/84 (3%)
Query: 10 QSGSS-RITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
QSG+S ITD QI DLVSKLQQL+PELR RSDKVSA KVLQETCNYI++LHREVDDLS+
Sbjct: 10 QSGASAEITDAQITDLVSKLQQLIPELRARRSDKVSAAKVLQETCNYIKNLHREVDDLSD 69
Query: 69 RLSELLATTD--TAQAAIIRSLLM 90
RLSELLA TD +AQAAIIRSLLM
Sbjct: 70 RLSELLANTDSNSAQAAIIRSLLM 93
>gi|255558162|ref|XP_002520108.1| transcription regulator, putative [Ricinus communis]
gi|223540600|gb|EEF42163.1| transcription regulator, putative [Ricinus communis]
Length = 93
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 64/78 (82%), Positives = 72/78 (92%), Gaps = 2/78 (2%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
I+DDQI DLVSKLQQL+PE+RN RSDKVSA KVLQETCNYI+SLHREVDDLS+RLSELLA
Sbjct: 16 ISDDQIIDLVSKLQQLIPEIRNRRSDKVSASKVLQETCNYIKSLHREVDDLSDRLSELLA 75
Query: 76 TT--DTAQAAIIRSLLMQ 91
+T D+AQAAIIRSL M+
Sbjct: 76 STDSDSAQAAIIRSLFME 93
>gi|356498222|ref|XP_003517952.1| PREDICTED: transcription factor bHLH135-like [Glycine max]
Length = 93
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/84 (79%), Positives = 74/84 (88%), Gaps = 3/84 (3%)
Query: 10 QSGSS-RITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
QSG+S ITD QI DLVSKLQQL+PELR RSDKVS+ KVLQETCNYI++LHREVDDLS+
Sbjct: 10 QSGASAEITDAQITDLVSKLQQLIPELRARRSDKVSSAKVLQETCNYIKNLHREVDDLSD 69
Query: 69 RLSELLATTD--TAQAAIIRSLLM 90
RLSELLA TD +AQAAIIRSLLM
Sbjct: 70 RLSELLANTDSNSAQAAIIRSLLM 93
>gi|224140967|ref|XP_002323848.1| predicted protein [Populus trichocarpa]
gi|222866850|gb|EEF03981.1| predicted protein [Populus trichocarpa]
Length = 87
Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/85 (76%), Positives = 72/85 (84%), Gaps = 2/85 (2%)
Query: 7 RSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDL 66
R RQS RITDDQI DLVSKL+QLLPE+ RSDKVSA KVLQETCNYIR+LHREVDDL
Sbjct: 3 RPRQSSVPRITDDQIIDLVSKLRQLLPEISQRRSDKVSASKVLQETCNYIRNLHREVDDL 62
Query: 67 SERLSELLAT--TDTAQAAIIRSLL 89
SERLS+LLAT D+ +AAIIRSL+
Sbjct: 63 SERLSQLLATIDADSPEAAIIRSLI 87
>gi|297842199|ref|XP_002888981.1| hypothetical protein ARALYDRAFT_476585 [Arabidopsis lyrata subsp.
lyrata]
gi|297334822|gb|EFH65240.1| hypothetical protein ARALYDRAFT_476585 [Arabidopsis lyrata subsp.
lyrata]
Length = 93
Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/77 (81%), Positives = 72/77 (93%), Gaps = 1/77 (1%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNR-SDKVSAGKVLQETCNYIRSLHREVDDLSERLSELL 74
I++DQINDL+ KLQQLLPELR++R SDKVSA +VLQ+TCNYIR+LHREVDDLSERLSELL
Sbjct: 17 ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELL 76
Query: 75 ATTDTAQAAIIRSLLMQ 91
A TDTAQAA+IRSLL Q
Sbjct: 77 ANTDTAQAALIRSLLTQ 93
>gi|388506890|gb|AFK41511.1| unknown [Lotus japonicus]
Length = 93
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/77 (81%), Positives = 70/77 (90%), Gaps = 2/77 (2%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
I+D QI DL+SKLQQL+PELR RSDKVSA KVLQETCNYI++LHREVDDLS+RLSELLA
Sbjct: 17 ISDAQITDLISKLQQLIPELRARRSDKVSAAKVLQETCNYIKNLHREVDDLSDRLSELLA 76
Query: 76 TTD--TAQAAIIRSLLM 90
TTD +AQAAIIRSLLM
Sbjct: 77 TTDSNSAQAAIIRSLLM 93
>gi|15221264|ref|NP_177590.1| transcription factor bHLH135 [Arabidopsis thaliana]
gi|75308937|sp|Q9CA64.1|BH135_ARATH RecName: Full=Transcription factor bHLH135; AltName: Full=Basic
helix-loop-helix protein 135; Short=AtbHLH135;
Short=bHLH 135; AltName: Full=Protein ACTIVATION-TAGGED
BRI1 SUPPRESSOR 1; Short=ATBS1; AltName: Full=Protein
PACLOBUTRAZOL RESISTANCE 1; AltName: Full=Protein
TARGET OF MOOPTEROS 7; AltName: Full=Transcription
factor EN 67; AltName: Full=bHLH transcription factor
bHLH135
gi|12324788|gb|AAG52350.1|AC011765_2 putative DNA-binding protein; 54988-54618 [Arabidopsis thaliana]
gi|21593858|gb|AAM65825.1| putative DNA-binding protein [Arabidopsis thaliana]
gi|27764980|gb|AAO23611.1| At1g74500 [Arabidopsis thaliana]
gi|110743013|dbj|BAE99399.1| putative DNA-binding protein [Arabidopsis thaliana]
gi|332197479|gb|AEE35600.1| transcription factor bHLH135 [Arabidopsis thaliana]
Length = 93
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/77 (80%), Positives = 72/77 (93%), Gaps = 1/77 (1%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNR-SDKVSAGKVLQETCNYIRSLHREVDDLSERLSELL 74
I++DQINDL+ KLQQLLPELR++R SDKVSA +VLQ+TCNYIR+LHREVDDLSERLSELL
Sbjct: 17 ISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELL 76
Query: 75 ATTDTAQAAIIRSLLMQ 91
A +DTAQAA+IRSLL Q
Sbjct: 77 ANSDTAQAALIRSLLTQ 93
>gi|449466975|ref|XP_004151201.1| PREDICTED: transcription factor bHLH135-like, partial [Cucumis
sativus]
Length = 82
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 75/82 (91%), Gaps = 2/82 (2%)
Query: 12 GSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLS 71
+SRI+DDQI +LVSKL+QL+PE+R+ R DKVSA KVLQETCNYIR+LHREVDDLSERLS
Sbjct: 1 SASRISDDQIIELVSKLRQLVPEIRHRRPDKVSASKVLQETCNYIRNLHREVDDLSERLS 60
Query: 72 ELLAT--TDTAQAAIIRSLLMQ 91
+LL+T +D+A+AAIIRSL+MQ
Sbjct: 61 QLLSTIDSDSAEAAIIRSLIMQ 82
>gi|356567536|ref|XP_003551974.1| PREDICTED: transcription factor bHLH135-like [Glycine max]
Length = 93
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/80 (77%), Positives = 71/80 (88%), Gaps = 2/80 (2%)
Query: 13 SSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
S+ ITD QI D++SKLQQL+PEL RSDKVSA KVLQETCNYI+SLHREVDDLS+RLS+
Sbjct: 14 STEITDAQITDIISKLQQLIPELDARRSDKVSASKVLQETCNYIKSLHREVDDLSDRLSQ 73
Query: 73 LLATTD--TAQAAIIRSLLM 90
LLATTD +AQAAIIRSLL+
Sbjct: 74 LLATTDSNSAQAAIIRSLLL 93
>gi|225452765|ref|XP_002283094.1| PREDICTED: transcription factor bHLH135 [Vitis vinifera]
gi|296082887|emb|CBI22188.3| unnamed protein product [Vitis vinifera]
Length = 90
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/75 (82%), Positives = 67/75 (89%), Gaps = 2/75 (2%)
Query: 18 DDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATT 77
DDQI +LVSKLQQLLPE+RN RSDKVSA KVLQETCNYIRSLHREVDDLSERLS LLAT
Sbjct: 16 DDQIIELVSKLQQLLPEIRNRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSRLLATV 75
Query: 78 --DTAQAAIIRSLLM 90
D+ +AAIIRSL+M
Sbjct: 76 DADSPEAAIIRSLIM 90
>gi|118487356|gb|ABK95506.1| unknown [Populus trichocarpa]
Length = 84
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/83 (74%), Positives = 71/83 (85%), Gaps = 2/83 (2%)
Query: 10 QSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSER 69
QS RITDDQI LVSKL+QLLPE+R RSDKVSA KVLQETCNYI++LHREVDDLSER
Sbjct: 2 QSSVPRITDDQIIHLVSKLRQLLPEIRQRRSDKVSASKVLQETCNYIKNLHREVDDLSER 61
Query: 70 LSELLAT--TDTAQAAIIRSLLM 90
LS+LLAT +D+ +A IIRSL+M
Sbjct: 62 LSQLLATIDSDSPEAEIIRSLIM 84
>gi|357486739|ref|XP_003613657.1| Transcription factor bHLH135 [Medicago truncatula]
gi|355514992|gb|AES96615.1| Transcription factor bHLH135 [Medicago truncatula]
gi|388498954|gb|AFK37543.1| unknown [Medicago truncatula]
Length = 93
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/77 (77%), Positives = 70/77 (90%), Gaps = 2/77 (2%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
ITD QI DL+SKLQQL+PEL +RS+KVSA KVLQETCNYI++LHREVDDLS+RLS+LLA
Sbjct: 17 ITDAQITDLISKLQQLIPELHASRSNKVSATKVLQETCNYIKNLHREVDDLSDRLSQLLA 76
Query: 76 TTD--TAQAAIIRSLLM 90
+TD +AQAAIIRSLLM
Sbjct: 77 STDSNSAQAAIIRSLLM 93
>gi|30689711|ref|NP_849712.1| basic helix-loop-helix domain-containing protein [Arabidopsis
thaliana]
gi|297850976|ref|XP_002893369.1| hypothetical protein ARALYDRAFT_472704 [Arabidopsis lyrata subsp.
lyrata]
gi|26453216|dbj|BAC43682.1| unknown protein [Arabidopsis thaliana]
gi|28416803|gb|AAO42932.1| At1g26948 [Arabidopsis thaliana]
gi|297339211|gb|EFH69628.1| hypothetical protein ARALYDRAFT_472704 [Arabidopsis lyrata subsp.
lyrata]
gi|332192642|gb|AEE30763.1| basic helix-loop-helix domain-containing protein [Arabidopsis
thaliana]
Length = 94
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 68/74 (91%), Gaps = 2/74 (2%)
Query: 18 DDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATT 77
DDQI+DLVSKLQ L+PELR RSDKVSA KVLQETCNYIR+LHREVDDLS+RLSELLA+T
Sbjct: 19 DDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNLHREVDDLSDRLSELLAST 78
Query: 78 D--TAQAAIIRSLL 89
D +A+AAIIRSLL
Sbjct: 79 DDNSAEAAIIRSLL 92
>gi|224077596|ref|XP_002305320.1| predicted protein [Populus trichocarpa]
gi|222848284|gb|EEE85831.1| predicted protein [Populus trichocarpa]
Length = 90
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/79 (75%), Positives = 69/79 (87%), Gaps = 2/79 (2%)
Query: 14 SRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
RITDDQI LVSKL+QLLPE+R RSDKVSA KVLQETCNYI++LHREVDDLSERLS+L
Sbjct: 12 PRITDDQIIHLVSKLRQLLPEIRQRRSDKVSASKVLQETCNYIKNLHREVDDLSERLSQL 71
Query: 74 LAT--TDTAQAAIIRSLLM 90
LAT +D+ +A IIRSL+M
Sbjct: 72 LATIDSDSPEAEIIRSLIM 90
>gi|449434802|ref|XP_004135185.1| PREDICTED: transcription factor bHLH135-like [Cucumis sativus]
gi|449478422|ref|XP_004155314.1| PREDICTED: transcription factor bHLH135-like [Cucumis sativus]
Length = 95
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/78 (78%), Positives = 70/78 (89%), Gaps = 3/78 (3%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSD-KVSAGKVLQETCNYIRSLHREVDDLSERLSELL 74
I+D+QI DL+SKLQQL+PE+RN RS +VSA KVLQETCNYIRSL REVDDLS+RLSELL
Sbjct: 18 ISDEQIADLISKLQQLIPEIRNGRSSSRVSASKVLQETCNYIRSLQREVDDLSDRLSELL 77
Query: 75 ATTD--TAQAAIIRSLLM 90
A+TD +AQAAIIRSLLM
Sbjct: 78 ASTDPESAQAAIIRSLLM 95
>gi|449458023|ref|XP_004146747.1| PREDICTED: transcription factor bHLH135-like [Cucumis sativus]
gi|449505683|ref|XP_004162540.1| PREDICTED: transcription factor bHLH135-like [Cucumis sativus]
Length = 96
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/83 (72%), Positives = 69/83 (83%), Gaps = 3/83 (3%)
Query: 11 SGSSRITDDQINDLVSKLQQLLPELRNNR-SDKVSAGKVLQETCNYIRSLHREVDDLSER 69
+ S I+DDQI DLVSKLQ+L+PELRN R S K SA +VLQETCNYIR+LHREVDDLSER
Sbjct: 14 AASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSER 73
Query: 70 LSELLATT--DTAQAAIIRSLLM 90
LS+LLA T D+A+A IIRSL M
Sbjct: 74 LSQLLAATENDSAEATIIRSLFM 96
>gi|42572553|ref|NP_974372.1| basic helix-loop-helix (bHLH) DNA-binding family protein
[Arabidopsis thaliana]
gi|9294226|dbj|BAB02128.1| DNA-binding protein-like [Arabidopsis thaliana]
gi|88900306|gb|ABD57465.1| At3g28857 [Arabidopsis thaliana]
gi|332643976|gb|AEE77497.1| basic helix-loop-helix (bHLH) DNA-binding family protein
[Arabidopsis thaliana]
Length = 92
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 77/93 (82%), Gaps = 4/93 (4%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNR-SDKVSAGKVLQETCNYIRSL 59
MS+RRSR + S +SRI+DDQ+ DLVSKL+Q LPE+ R SDKVSA KVLQETCNYIR L
Sbjct: 1 MSNRRSR-QTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKL 59
Query: 60 HREVDDLSERLSELLATT--DTAQAAIIRSLLM 90
HREVD+LS+RLS+LL + D+ +AA+IRSLLM
Sbjct: 60 HREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92
>gi|115451023|ref|NP_001049112.1| Os03g0171300 [Oryza sativa Japonica Group]
gi|113547583|dbj|BAF11026.1| Os03g0171300 [Oryza sativa Japonica Group]
gi|125585085|gb|EAZ25749.1| hypothetical protein OsJ_09588 [Oryza sativa Japonica Group]
gi|218192177|gb|EEC74604.1| hypothetical protein OsI_10199 [Oryza sativa Indica Group]
Length = 92
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/77 (76%), Positives = 68/77 (88%), Gaps = 2/77 (2%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
ITD+QI+DLVSKLQ LLPE R +D+V + +VLQETCNYIRSLH+EVDDLSERLSELLA
Sbjct: 16 ITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLHQEVDDLSERLSELLA 75
Query: 76 TTD--TAQAAIIRSLLM 90
T+D +AQAAIIRSLLM
Sbjct: 76 TSDMSSAQAAIIRSLLM 92
>gi|357113838|ref|XP_003558708.1| PREDICTED: transcription factor bHLH135-like [Brachypodium
distachyon]
Length = 92
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/77 (76%), Positives = 68/77 (88%), Gaps = 2/77 (2%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
ITD+QI+DLVSKLQ LLPE R +D+V + +VLQETC+YIRSLHREVDDLSERLSELLA
Sbjct: 16 ITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCSYIRSLHREVDDLSERLSELLA 75
Query: 76 TTD--TAQAAIIRSLLM 90
T+D +AQAAIIRSLLM
Sbjct: 76 TSDMSSAQAAIIRSLLM 92
>gi|4741188|emb|CAB41854.1| hypothetical protein [Arabidopsis thaliana]
Length = 78
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/77 (75%), Positives = 69/77 (89%), Gaps = 1/77 (1%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNR-SDKVSAGKVLQETCNYIRSLHREVDDLSERLSELL 74
ITD+QINDLV +L +LLPEL NNR S KVSA +VLQETC+YIR+L +EVDDLSERLS+LL
Sbjct: 2 ITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSKEVDDLSERLSQLL 61
Query: 75 ATTDTAQAAIIRSLLMQ 91
+TD+AQAA+IRSLLMQ
Sbjct: 62 ESTDSAQAALIRSLLMQ 78
>gi|21617952|gb|AAM67002.1| DNA-binding protein-like [Arabidopsis thaliana]
Length = 92
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 76/93 (81%), Gaps = 4/93 (4%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNR-SDKVSAGKVLQETCNYIRSL 59
MS+RRSR + S +SRI+DDQ+ DLVSKL+Q LPE+ R SDKVSA VLQETCNYIR L
Sbjct: 1 MSNRRSR-QTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASXVLQETCNYIRKL 59
Query: 60 HREVDDLSERLSELLATT--DTAQAAIIRSLLM 90
HREVD+LS+RLS+LL + D+ +AA+IRSLLM
Sbjct: 60 HREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92
>gi|350537357|ref|NP_001234290.1| transcription factor style2.1 [Solanum lycopersicum]
gi|162280539|gb|ABX82930.1| transcription factor style2.1 [Solanum lycopersicum]
gi|162280541|gb|ABX82931.1| transcription factor style2.1 [Solanum pennellii]
gi|162280543|gb|ABX82932.1| transcription factor style2.1 [Solanum lycopersicum]
gi|162280545|gb|ABX82933.1| transcription factor style2.1 [Solanum pennellii]
Length = 92
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 68/77 (88%), Gaps = 2/77 (2%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
I+DDQI +LVSKLQQLLPE+RN RS K SA KVLQETCNYIR+L+R+VDDLS+RLS+LL+
Sbjct: 16 ISDDQIIELVSKLQQLLPEIRNRRSSKASASKVLQETCNYIRNLNRQVDDLSDRLSQLLS 75
Query: 76 T--TDTAQAAIIRSLLM 90
T D+ +AAIIRSLLM
Sbjct: 76 TIDADSPEAAIIRSLLM 92
>gi|78708592|gb|ABB47567.1| hypothetical protein LOC_Os10g26460 [Oryza sativa Japonica Group]
Length = 91
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 64/77 (83%), Gaps = 2/77 (2%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
ITD+QI DLVSKLQ LLPE R +D+V + +VLQETC+YIRSLHREVDDLSERL+ELLA
Sbjct: 15 ITDEQIGDLVSKLQALLPEARLRSNDRVPSARVLQETCSYIRSLHREVDDLSERLAELLA 74
Query: 76 TTD--TAQAAIIRSLLM 90
D TAQAA+IR LLM
Sbjct: 75 AADVSTAQAAVIRGLLM 91
>gi|125605657|gb|EAZ44693.1| hypothetical protein OsJ_29320 [Oryza sativa Japonica Group]
Length = 91
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 64/77 (83%), Gaps = 2/77 (2%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
ITD+QI DLVSKLQ LLPE R +D+V + +VLQETC+YIRSLHREVDDLSERL+ELLA
Sbjct: 15 ITDEQIGDLVSKLQALLPEARLRSNDRVPSARVLQETCSYIRSLHREVDDLSERLAELLA 74
Query: 76 TTD--TAQAAIIRSLLM 90
D TAQAA+IR LLM
Sbjct: 75 AADVSTAQAAVIRGLLM 91
>gi|125531849|gb|EAY78414.1| hypothetical protein OsI_33503 [Oryza sativa Indica Group]
Length = 91
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 64/77 (83%), Gaps = 2/77 (2%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
ITD+QI DLVSKLQ LLPE R +D+V + +VLQETC+YIRSLHREVDDLSERL+ELLA
Sbjct: 15 ITDEQIGDLVSKLQALLPEARLRSNDRVPSARVLQETCSYIRSLHREVDDLSERLAELLA 74
Query: 76 TTD--TAQAAIIRSLLM 90
D TAQAA+IR LLM
Sbjct: 75 AADVSTAQAAVIRGLLM 91
>gi|242036771|ref|XP_002465780.1| hypothetical protein SORBIDRAFT_01g045710 [Sorghum bicolor]
gi|241919634|gb|EER92778.1| hypothetical protein SORBIDRAFT_01g045710 [Sorghum bicolor]
Length = 92
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 67/77 (87%), Gaps = 2/77 (2%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
IT++QI+DLVSKLQ LLPE R + +V + +VLQETCNYIRSLH+EVDDLSERLSELLA
Sbjct: 16 ITEEQISDLVSKLQDLLPEARLQSNARVPSARVLQETCNYIRSLHQEVDDLSERLSELLA 75
Query: 76 TTD--TAQAAIIRSLLM 90
T+D +AQAA+IRSLLM
Sbjct: 76 TSDMSSAQAAVIRSLLM 92
>gi|414865066|tpg|DAA43623.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea
mays]
Length = 92
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 67/77 (87%), Gaps = 2/77 (2%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
IT++QI+DLVSKLQ LLPE R + +V + +VLQETCNYIR+LH+EVDDLSERLSELLA
Sbjct: 16 ITEEQISDLVSKLQDLLPEARLQSNARVPSARVLQETCNYIRNLHQEVDDLSERLSELLA 75
Query: 76 TTD--TAQAAIIRSLLM 90
T+D +AQAA+IRSLLM
Sbjct: 76 TSDMSSAQAAVIRSLLM 92
>gi|297805732|ref|XP_002870750.1| hypothetical protein ARALYDRAFT_916307 [Arabidopsis lyrata subsp.
lyrata]
gi|297316586|gb|EFH47009.1| hypothetical protein ARALYDRAFT_916307 [Arabidopsis lyrata subsp.
lyrata]
Length = 92
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 70/81 (86%), Gaps = 3/81 (3%)
Query: 13 SSRITDDQINDLVSKLQQLLPEL-RNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLS 71
+ RI+DDQ+ DLV+KL+Q+LPE+ + RSDKVSA KVLQETCNYIR+L+REVD+LSERLS
Sbjct: 12 APRISDDQMIDLVTKLRQILPEIGQRRRSDKVSASKVLQETCNYIRNLNREVDNLSERLS 71
Query: 72 ELLATT--DTAQAAIIRSLLM 90
+LL + D+ +AA+IRSLLM
Sbjct: 72 QLLESVDEDSPEAAVIRSLLM 92
>gi|15242499|ref|NP_198802.1| basic helix-loop-helix (bHLH) DNA-binding family protein
[Arabidopsis thaliana]
gi|10176978|dbj|BAB10210.1| DNA-binding protein-like [Arabidopsis thaliana]
gi|21593819|gb|AAM65786.1| DNA-binding protein-like [Arabidopsis thaliana]
gi|332007101|gb|AED94484.1| basic helix-loop-helix (bHLH) DNA-binding family protein
[Arabidopsis thaliana]
Length = 92
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 69/81 (85%), Gaps = 3/81 (3%)
Query: 13 SSRITDDQINDLVSKLQQLLPEL-RNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLS 71
+ RI+D+Q+ DLVSKL+Q+LPE+ + RSDK SA KVLQETCNYIR+L+REVD+LSERLS
Sbjct: 12 APRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNREVDNLSERLS 71
Query: 72 ELLATT--DTAQAAIIRSLLM 90
+LL + D+ +AA+IRSLLM
Sbjct: 72 QLLESVDEDSPEAAVIRSLLM 92
>gi|297818506|ref|XP_002877136.1| transcription regulator [Arabidopsis lyrata subsp. lyrata]
gi|297322974|gb|EFH53395.1| transcription regulator [Arabidopsis lyrata subsp. lyrata]
Length = 92
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 64/76 (84%), Gaps = 3/76 (3%)
Query: 18 DDQINDLVSKLQQLLPELRNNR-SDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLAT 76
DDQ+ DLVSKL+Q LPE++ R SDKVSA KVLQETCNYIR LHREVD+LS+RLS+LL +
Sbjct: 17 DDQMIDLVSKLRQFLPEIQERRRSDKVSASKVLQETCNYIRKLHREVDNLSDRLSQLLDS 76
Query: 77 T--DTAQAAIIRSLLM 90
D+ +AA+IRSLLM
Sbjct: 77 VDEDSPEAAVIRSLLM 92
>gi|21671920|gb|AAM74282.1|AC083943_22 Hypothetical protein similar to putative DNA binding proteins
[Oryza sativa Japonica Group]
gi|31431968|gb|AAP53674.1| bHLH family protein, putative, expressed [Oryza sativa Japonica
Group]
gi|125531848|gb|EAY78413.1| hypothetical protein OsI_33502 [Oryza sativa Indica Group]
gi|125574725|gb|EAZ16009.1| hypothetical protein OsJ_31454 [Oryza sativa Japonica Group]
Length = 88
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 68/93 (73%), Gaps = 10/93 (10%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRS 58
MS RR+ S RITDD+IN+L+SKLQ LLPE R + + A K+L+E C+YI+S
Sbjct: 1 MSGRRA------SGRITDDEINELISKLQSLLPESSRRRGATSRSPATKLLKEMCSYIKS 54
Query: 59 LHREVDDLSERLSELLATTD--TAQAAIIRSLL 89
LHREVDDLSERLSEL+AT D + QA IIRSLL
Sbjct: 55 LHREVDDLSERLSELMATMDSNSPQADIIRSLL 87
>gi|15242227|ref|NP_197020.1| protein banquo 2 [Arabidopsis thaliana]
gi|297811653|ref|XP_002873710.1| bHLH family protein [Arabidopsis lyrata subsp. lyrata]
gi|7671485|emb|CAB89326.1| putative protein [Arabidopsis thaliana]
gi|26452783|dbj|BAC43472.1| unknown protein [Arabidopsis thaliana]
gi|28973111|gb|AAO63880.1| putative bHLH protein [Arabidopsis thaliana]
gi|297319547|gb|EFH49969.1| bHLH family protein [Arabidopsis lyrata subsp. lyrata]
gi|332004740|gb|AED92123.1| protein banquo 2 [Arabidopsis thaliana]
Length = 94
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/75 (64%), Positives = 63/75 (84%), Gaps = 3/75 (4%)
Query: 18 DDQINDLVSKLQQLLPELRNNR-SDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLAT 76
DDQI DL+SKL+Q +PE+R NR S+ VSA KVLQETCNYIR+L++E DDLS+RL++LL +
Sbjct: 18 DDQITDLISKLRQSIPEIRQNRRSNTVSASKVLQETCNYIRNLNKEADDLSDRLTQLLES 77
Query: 77 TD--TAQAAIIRSLL 89
D + QAA+IRSL+
Sbjct: 78 IDPNSPQAAVIRSLI 92
>gi|226491634|ref|NP_001152510.1| DNA binding protein [Zea mays]
gi|195657019|gb|ACG47977.1| DNA binding protein [Zea mays]
gi|413938887|gb|AFW73438.1| hypothetical protein ZEAMMB73_736000 [Zea mays]
Length = 89
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 68/91 (74%), Gaps = 6/91 (6%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLH 60
MSSRR SR + I++D+IN+L+SKLQ LLP R S + S K+L+ETC+YI+SLH
Sbjct: 1 MSSRRPSSRGN----ISEDEINELISKLQALLPSSRRRGSGQASTTKLLKETCSYIKSLH 56
Query: 61 REVDDLSERLSELLATTD--TAQAAIIRSLL 89
REVDDLS+RLS+L+AT D + A IIRS+L
Sbjct: 57 REVDDLSDRLSDLMATMDHNSPGAEIIRSIL 87
>gi|326513172|dbj|BAK06826.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 88
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/84 (57%), Positives = 65/84 (77%), Gaps = 2/84 (2%)
Query: 8 SRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLS 67
SR+S I+D++IN+L+SKLQ LLP R S + S K+L+ETC+YI+SLHREVDDLS
Sbjct: 3 SRRSSRGAISDEEINELISKLQSLLPNSRRRGSSQASTTKLLKETCSYIKSLHREVDDLS 62
Query: 68 ERLSELLATTD--TAQAAIIRSLL 89
+RLS+L++T D +A A IIRS+L
Sbjct: 63 DRLSDLMSTMDHNSAGAEIIRSIL 86
>gi|414585177|tpg|DAA35748.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 104
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 62/77 (80%), Gaps = 4/77 (5%)
Query: 18 DDQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
+DQI++L+SKLQ LLPE RN + + SA +VLQ+TC+YIRSLH+EVD+LSE L+ELLA
Sbjct: 28 EDQISELLSKLQALLPESQARNGGAHRGSAARVLQDTCSYIRSLHQEVDNLSETLAELLA 87
Query: 76 TTDTA--QAAIIRSLLM 90
+ D QAA+IRSLLM
Sbjct: 88 SADVTSDQAAVIRSLLM 104
>gi|226508810|ref|NP_001148242.1| LOC100281850 [Zea mays]
gi|195616894|gb|ACG30277.1| DNA binding protein [Zea mays]
Length = 87
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 68/91 (74%), Gaps = 7/91 (7%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLH 60
MSSRRSR+ S +++++IN+L+S+LQ LLP R + S K+L+ETC+YI+SLH
Sbjct: 1 MSSRRSRA-----STVSEEEINELISRLQTLLPSARRRGGSQASTTKLLKETCSYIKSLH 55
Query: 61 REVDDLSERLSELLATTD--TAQAAIIRSLL 89
REVDDLS+RLS+L+A+ D + A IIRSLL
Sbjct: 56 REVDDLSDRLSDLMASMDHNSPGAEIIRSLL 86
>gi|357124737|ref|XP_003564054.1| PREDICTED: transcription factor bHLH135-like [Brachypodium
distachyon]
Length = 90
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 70/92 (76%), Gaps = 6/92 (6%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLP-ELRNNRSDKVSAGKVLQETCNYIRSL 59
MS RRS SR G+S +++++IN+L+SKLQ LLP R S + S K+L+ETC+YI+SL
Sbjct: 1 MSGRRSSSR--GNS-VSEEEINELISKLQSLLPASARRRGSSQASTTKLLKETCSYIKSL 57
Query: 60 HREVDDLSERLSELLATTD--TAQAAIIRSLL 89
HREVDDLS+RLS+L+AT D + A IIRSLL
Sbjct: 58 HREVDDLSDRLSDLMATMDHNSPGAEIIRSLL 89
>gi|242077374|ref|XP_002448623.1| hypothetical protein SORBIDRAFT_06g030340 [Sorghum bicolor]
gi|241939806|gb|EES12951.1| hypothetical protein SORBIDRAFT_06g030340 [Sorghum bicolor]
Length = 104
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 62/76 (81%), Gaps = 3/76 (3%)
Query: 18 DDQINDLVSKLQQLLPELRN-NRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLAT 76
+DQI++L+SKLQ LLPE + N + + SA +VLQ+TC+YIRSLH+EVD+LSE L+ELLA+
Sbjct: 29 EDQISELLSKLQALLPESQTRNGAHRGSAARVLQDTCSYIRSLHQEVDNLSETLAELLAS 88
Query: 77 TDTA--QAAIIRSLLM 90
D QAA+IRSLLM
Sbjct: 89 ADVTSDQAAVIRSLLM 104
>gi|32490047|emb|CAE05966.1| OSJNBa0063C18.7 [Oryza sativa Japonica Group]
gi|38344909|emb|CAD41853.2| OSJNBb0079B02.12 [Oryza sativa Japonica Group]
gi|90399104|emb|CAC09458.2| H0423H10.4 [Oryza sativa Indica Group]
gi|125549935|gb|EAY95757.1| hypothetical protein OsI_17632 [Oryza sativa Indica Group]
gi|125591815|gb|EAZ32165.1| hypothetical protein OsJ_16370 [Oryza sativa Japonica Group]
Length = 104
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 61/76 (80%), Gaps = 3/76 (3%)
Query: 18 DDQINDLVSKLQQLLPELRN-NRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLAT 76
+DQI +L+SKLQ LLPE + N + + SA +VLQETC+YIRSLH+EVD+LSE L++LLA+
Sbjct: 29 EDQIAELLSKLQALLPESQARNGAHRGSAARVLQETCSYIRSLHQEVDNLSETLAQLLAS 88
Query: 77 TDTA--QAAIIRSLLM 90
D QAA+IRSLLM
Sbjct: 89 PDVTSDQAAVIRSLLM 104
>gi|226498672|ref|NP_001152393.1| DNA binding protein [Zea mays]
gi|195655845|gb|ACG47390.1| DNA binding protein [Zea mays]
gi|223944863|gb|ACN26515.1| unknown [Zea mays]
gi|413924559|gb|AFW64491.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 90
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 67/92 (72%), Gaps = 7/92 (7%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNR-SDKVSAGKVLQETCNYIRSL 59
MSSRRS S I++D++N+LVSKLQ LLP R R S + S K+L+ETC+YI+SL
Sbjct: 1 MSSRRS----SSHGNISEDEMNELVSKLQALLPSSRRRRGSGQASTAKLLKETCSYIKSL 56
Query: 60 HREVDDLSERLSELLATTD--TAQAAIIRSLL 89
REVDDLS+RLS+LL+T D + A IIRS+L
Sbjct: 57 QREVDDLSDRLSDLLSTMDHNSPAAEIIRSIL 88
>gi|242062526|ref|XP_002452552.1| hypothetical protein SORBIDRAFT_04g027930 [Sorghum bicolor]
gi|241932383|gb|EES05528.1| hypothetical protein SORBIDRAFT_04g027930 [Sorghum bicolor]
Length = 90
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 60/76 (78%), Gaps = 2/76 (2%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
I++D+IN+L+SKLQ LLP R S + S K+L+ETC+YI+SLHREVDDLS+RLS+L++
Sbjct: 13 ISEDEINELISKLQALLPSSRRRGSGQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMS 72
Query: 76 TTD--TAQAAIIRSLL 89
T D + A IIRS+L
Sbjct: 73 TMDHNSPGAEIIRSIL 88
>gi|46390936|dbj|BAD16450.1| DNA binding protein-like [Oryza sativa Japonica Group]
gi|125541133|gb|EAY87528.1| hypothetical protein OsI_08935 [Oryza sativa Indica Group]
gi|125583685|gb|EAZ24616.1| hypothetical protein OsJ_08379 [Oryza sativa Japonica Group]
Length = 88
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 58/74 (78%), Gaps = 2/74 (2%)
Query: 18 DDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATT 77
+++IN+L+SKLQ LLP R S + S K+L+ETCNYI+SLHREVDDLS+RLS+L+AT
Sbjct: 13 EEEINELISKLQSLLPNSRRRGSSQASTTKLLKETCNYIKSLHREVDDLSDRLSDLMATM 72
Query: 78 D--TAQAAIIRSLL 89
D + A IIRS+L
Sbjct: 73 DHNSPGAEIIRSIL 86
>gi|326506598|dbj|BAJ91340.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 85
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 67/92 (72%), Gaps = 11/92 (11%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAG-KVLQETCNYIRSL 59
MSSRR R ITD++IN+L+SKLQ LLPE RS S+ K+L+ETC YI+SL
Sbjct: 1 MSSRRGR--------ITDEEINELISKLQALLPESSRRRSASRSSASKLLKETCGYIKSL 52
Query: 60 HREVDDLSERLSELLATTD--TAQAAIIRSLL 89
H+EVDDLS+RLSEL++T D + QA IIRSLL
Sbjct: 53 HQEVDDLSDRLSELMSTLDETSPQAEIIRSLL 84
>gi|357138125|ref|XP_003570648.1| PREDICTED: transcription factor bHLH135-like [Brachypodium
distachyon]
Length = 89
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 60/76 (78%), Gaps = 2/76 (2%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLA 75
I++++IN+L+SKLQ LLP R S + S K+L+ETC+YI+SLHREVDDLS+RLS+L++
Sbjct: 12 ISEEEINELISKLQSLLPNARRRGSSQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMS 71
Query: 76 TTD--TAQAAIIRSLL 89
T D + A IIRS+L
Sbjct: 72 TMDHNSPGAEIIRSIL 87
>gi|242039763|ref|XP_002467276.1| hypothetical protein SORBIDRAFT_01g022440 [Sorghum bicolor]
gi|241921130|gb|EER94274.1| hypothetical protein SORBIDRAFT_01g022440 [Sorghum bicolor]
Length = 95
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 69/84 (82%), Gaps = 5/84 (5%)
Query: 11 SGSSRITDDQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
G SRI+D+QI+DLV+KLQ LLP+ LR N S +V + +VLQETC+YIRSLHREVDDLS+
Sbjct: 13 GGPSRISDEQISDLVTKLQALLPDARLRTNDS-RVPSARVLQETCSYIRSLHREVDDLSD 71
Query: 69 RLSELLATTD--TAQAAIIRSLLM 90
LSELL T D TAQAA+IRSLLM
Sbjct: 72 LLSELLTTADVSTAQAAVIRSLLM 95
>gi|255540981|ref|XP_002511555.1| DNA binding protein, putative [Ricinus communis]
gi|223550670|gb|EEF52157.1| DNA binding protein, putative [Ricinus communis]
Length = 89
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 64/93 (68%), Gaps = 6/93 (6%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLH 60
MSSRRS +S+ T D++NDLV KLQ LLP+L ++ +VS K+LQETC+YIRSL
Sbjct: 1 MSSRRS----GAASKFTQDELNDLVLKLQALLPQLNQRQASRVSVSKILQETCSYIRSLQ 56
Query: 61 REVDDLSERLSELLATTDTAQAAI--IRSLLMQ 91
E DDLSE+LS+LL + + A I +RS L Q
Sbjct: 57 SEADDLSEKLSQLLDSFNIADVDIETLRSNLQQ 89
>gi|226497200|ref|NP_001149761.1| DNA binding protein [Zea mays]
gi|242042055|ref|XP_002468422.1| hypothetical protein SORBIDRAFT_01g045690 [Sorghum bicolor]
gi|195632534|gb|ACG36703.1| DNA binding protein [Zea mays]
gi|241922276|gb|EER95420.1| hypothetical protein SORBIDRAFT_01g045690 [Sorghum bicolor]
gi|414865074|tpg|DAA43631.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea
mays]
Length = 86
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 61/79 (77%), Gaps = 3/79 (3%)
Query: 14 SRITDDQINDLVSKLQQLLPELRNNRSDKVSAG-KVLQETCNYIRSLHREVDDLSERLSE 72
RI+DD+IN+L+SKLQ LLPE R+ S+ K+L+ETC YI+SLHREVDDLSERLS
Sbjct: 7 GRISDDEINELISKLQALLPESSRRRNASRSSASKLLKETCAYIKSLHREVDDLSERLSG 66
Query: 73 LLAT--TDTAQAAIIRSLL 89
L++T D+ QA IIRSLL
Sbjct: 67 LMSTMDNDSPQAEIIRSLL 85
>gi|326527085|dbj|BAK04484.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 97
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/79 (62%), Positives = 62/79 (78%), Gaps = 6/79 (7%)
Query: 16 ITDDQINDLVSKLQQLLPELRN--NRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
I+++QI++L+SKLQ LLPE N + + SA +VLQETC+YIRSLHREVDDLSE L+ L
Sbjct: 19 ISEEQISELLSKLQALLPESTQARNGAHRGSAARVLQETCSYIRSLHREVDDLSETLAAL 78
Query: 74 LAT---TDTAQAAIIRSLL 89
LA+ TD QAA+IRSLL
Sbjct: 79 LASDAVTDE-QAAVIRSLL 96
>gi|115451027|ref|NP_001049114.1| Os03g0171700 [Oryza sativa Japonica Group]
gi|108706426|gb|ABF94221.1| bHLH family protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113547585|dbj|BAF11028.1| Os03g0171700 [Oryza sativa Japonica Group]
gi|125542586|gb|EAY88725.1| hypothetical protein OsI_10202 [Oryza sativa Indica Group]
gi|125585087|gb|EAZ25751.1| hypothetical protein OsJ_09590 [Oryza sativa Japonica Group]
gi|215768855|dbj|BAH01084.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 91
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 16 ITDDQINDLVSKLQQLLPELRNNRSDKVSAG-KVLQETCNYIRSLHREVDDLSERLSELL 74
ITD++IN+L+SKLQ LLPE +R S+ K+L+ETC+YI+SLHREVDDLS+RLSEL+
Sbjct: 14 ITDEEINELISKLQALLPESSRSRGASRSSASKLLKETCSYIKSLHREVDDLSDRLSELM 73
Query: 75 ATTD--TAQAAIIRSLL 89
+T D + QA IIRSLL
Sbjct: 74 STMDNNSPQAEIIRSLL 90
>gi|226499616|ref|NP_001151208.1| LOC100284841 [Zea mays]
gi|195645018|gb|ACG41977.1| DNA binding protein [Zea mays]
gi|413956872|gb|AFW89521.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 87
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 60/79 (75%), Gaps = 3/79 (3%)
Query: 14 SRITDDQINDLVSKLQQLLPELRNNRSDKVSAG-KVLQETCNYIRSLHREVDDLSERLSE 72
RI+DD+IN+L+SKLQ LLPE R+ S+ K+L+ETC Y++SLHREVDDLSERLS
Sbjct: 8 GRISDDEINELISKLQALLPESSRRRNASRSSASKLLKETCAYVKSLHREVDDLSERLSG 67
Query: 73 LLAT--TDTAQAAIIRSLL 89
L+ T D+ QA IIRSLL
Sbjct: 68 LMETMDNDSPQAEIIRSLL 86
>gi|357113836|ref|XP_003558707.1| PREDICTED: transcription factor bHLH135-like [Brachypodium
distachyon]
Length = 85
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 67/92 (72%), Gaps = 11/92 (11%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAG-KVLQETCNYIRSL 59
MSSRR R ITD++I +L+SKLQ LLPE R+ S+ K+L+ETC+YI++L
Sbjct: 1 MSSRRGR--------ITDEEITELISKLQALLPESSRRRTASRSSASKLLKETCSYIKNL 52
Query: 60 HREVDDLSERLSELLATTD--TAQAAIIRSLL 89
H+EVDDLSERLSEL++T D + QA IIRSLL
Sbjct: 53 HQEVDDLSERLSELMSTLDDNSPQAEIIRSLL 84
>gi|242092508|ref|XP_002436744.1| hypothetical protein SORBIDRAFT_10g008000 [Sorghum bicolor]
gi|241914967|gb|EER88111.1| hypothetical protein SORBIDRAFT_10g008000 [Sorghum bicolor]
Length = 86
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 57/74 (77%), Gaps = 2/74 (2%)
Query: 18 DDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATT 77
+++IN+L+S+LQ LLP R + S K+L+ETC+YI+SLHREVDDLS+RLS+L+AT
Sbjct: 12 EEEINELISRLQTLLPSARRRGGSEASTTKLLKETCSYIKSLHREVDDLSDRLSDLMATM 71
Query: 78 D--TAQAAIIRSLL 89
D + A IIRSLL
Sbjct: 72 DHNSPGAEIIRSLL 85
>gi|108706422|gb|ABF94217.1| hypothetical protein LOC_Os03g07510 [Oryza sativa Japonica Group]
Length = 110
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 47/53 (88%), Gaps = 2/53 (3%)
Query: 40 SDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATTD--TAQAAIIRSLLM 90
S V + +VLQETCNYIRSLH+EVDDLSERLSELLAT+D +AQAAIIRSLLM
Sbjct: 58 SQVVPSSRVLQETCNYIRSLHQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 110
>gi|225456729|ref|XP_002268291.1| PREDICTED: transcription factor bHLH135 [Vitis vinifera]
gi|297733999|emb|CBI15246.3| unnamed protein product [Vitis vinifera]
Length = 90
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 63/93 (67%), Gaps = 9/93 (9%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNR-SDKVSAGKVLQETCNYIRSL 59
MS++R+R+ SR+TDD+INDL+ KLQ LLP R S SA ++L+ETC+YI+ L
Sbjct: 1 MSTQRARA-----SRVTDDEINDLILKLQALLPHSNQRRTSTGASAWRILKETCSYIKRL 55
Query: 60 HREVDDLSERLSELLATTDTAQAAII---RSLL 89
HREV DLSERLS+LL + D + RSLL
Sbjct: 56 HREVGDLSERLSQLLDSLDNINGVEVEQLRSLL 88
>gi|115467208|ref|NP_001057203.1| Os06g0226500 [Oryza sativa Japonica Group]
gi|113595243|dbj|BAF19117.1| Os06g0226500 [Oryza sativa Japonica Group]
gi|125554623|gb|EAZ00229.1| hypothetical protein OsI_22236 [Oryza sativa Indica Group]
gi|125596562|gb|EAZ36342.1| hypothetical protein OsJ_20669 [Oryza sativa Japonica Group]
gi|215701153|dbj|BAG92577.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 87
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 55/71 (77%), Gaps = 2/71 (2%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATTD-- 78
IN+L+SKLQ LLP R +++ S K+L+ETC+YI+SLHREVDDLS+RLS+L+A D
Sbjct: 16 INELISKLQSLLPSSRRRGANQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMAGMDHN 75
Query: 79 TAQAAIIRSLL 89
+ A IIRSLL
Sbjct: 76 SPGAEIIRSLL 86
>gi|326488733|dbj|BAJ97978.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 60
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/51 (80%), Positives = 46/51 (90%), Gaps = 2/51 (3%)
Query: 42 KVSAGKVLQETCNYIRSLHREVDDLSERLSELLATTD--TAQAAIIRSLLM 90
+V + +VLQETC YIRSLHREVDDLSERLSELLAT+D +AQAAIIRSLLM
Sbjct: 10 EVPSSRVLQETCTYIRSLHREVDDLSERLSELLATSDMSSAQAAIIRSLLM 60
>gi|225452769|ref|XP_002277912.1| PREDICTED: transcription factor bHLH135-like [Vitis vinifera]
Length = 91
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 7/94 (7%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLP-ELRNNRSDKVSAGKVLQETCNYIRSL 59
M+SRRS+ SS + +D++ DL+ KL+ LLP E+ N + +VS ++L+ETCN+I+ L
Sbjct: 1 MASRRSKP----SSSVPEDELKDLIMKLRALLPTEINRNNTTRVSLWRLLEETCNHIKRL 56
Query: 60 HREVDDLSERLSELLAT--TDTAQAAIIRSLLMQ 91
EVD LSERL EL+A+ T TA+A I+R + Q
Sbjct: 57 QTEVDGLSERLYELMASPNTSTAEADILRRVFEQ 90
>gi|357166276|ref|XP_003580657.1| PREDICTED: transcription factor bHLH135-like [Brachypodium
distachyon]
Length = 102
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 60/76 (78%), Gaps = 3/76 (3%)
Query: 18 DDQINDLVSKLQQLLPELRN-NRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLAT 76
++Q+++L+SKLQ LLP+ + N + + +A +V+Q+TC+YIRSL +EVDDLSE L+ LLA+
Sbjct: 27 EEQVSELLSKLQALLPDSQPRNGAHRGAASRVVQDTCSYIRSLQQEVDDLSETLAALLAS 86
Query: 77 --TDTAQAAIIRSLLM 90
+ QAA+IRSLLM
Sbjct: 87 DAVPSDQAALIRSLLM 102
>gi|124359233|gb|ABD32218.2| Helix-loop-helix DNA-binding [Medicago truncatula]
gi|124360944|gb|ABN08916.1| Helix-loop-helix DNA-binding [Medicago truncatula]
Length = 68
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 45/52 (86%), Gaps = 2/52 (3%)
Query: 42 KVSAGKVLQETCNYIRSLHREVDDLSERLSELLAT--TDTAQAAIIRSLLMQ 91
KV A KVLQETCNYIR+L REVDDLS RLS+LLAT +D+A+A+IIRSLL Q
Sbjct: 17 KVPASKVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRSLLNQ 68
>gi|356524539|ref|XP_003530886.1| PREDICTED: transcription factor bHLH135-like [Glycine max]
Length = 91
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLH 60
MS +R SR +S+ T+++IN+LVS+LQ LLP++ + + SA K+LQETC +IR L
Sbjct: 1 MSGQRRSSR---ASKFTENEINELVSRLQVLLPQVNQRGNSRQSASKILQETCCHIRRLQ 57
Query: 61 REVDDLSERLSELLATTDTA 80
EV+ LSERLSE+L + D +
Sbjct: 58 EEVEQLSERLSEILDSADIS 77
>gi|115486185|ref|NP_001068236.1| Os11g0603000 [Oryza sativa Japonica Group]
gi|77551811|gb|ABA94608.1| Helix-loop-helix DNA-binding domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|113645458|dbj|BAF28599.1| Os11g0603000 [Oryza sativa Japonica Group]
gi|215766976|dbj|BAG99204.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218186012|gb|EEC68439.1| hypothetical protein OsI_36643 [Oryza sativa Indica Group]
Length = 101
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 10/89 (11%)
Query: 11 SGSSRITDDQINDLVSKLQQLLPELRNNRSD--KVSAGKVLQETCNYIRSLHREVDDLSE 68
+ + TD+Q+ +L+SKLQ +LP R ++ + S+ +VLQE C YIR LHRE D LSE
Sbjct: 14 AAAPPPTDEQMAELISKLQAVLPT-RGGEANAKQASSAEVLQEACRYIRRLHREADALSE 72
Query: 69 RLSEL-------LATTDTAQAAIIRSLLM 90
RL+EL LA +IRSLLM
Sbjct: 73 RLAELLLLQPSDLAINGADVPDLIRSLLM 101
>gi|356507147|ref|XP_003522332.1| PREDICTED: transcription factor bHLH135-like [Glycine max]
Length = 92
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
Query: 9 RQSGSSRITDDQINDLVSKLQQLLPELR---NNRSDKVSAGKVLQETCNYIRSLHREVDD 65
R S +S+ T+ +INDL+ +LQ LLP+L N+R+ VS K+++ETC++I L +EV D
Sbjct: 5 RNSRTSKFTESEINDLMLRLQALLPQLNQTSNSRASSVSVMKIMKETCSHITRLQKEVKD 64
Query: 66 LSERLSELLATTD 78
L ERL +L+ + D
Sbjct: 65 LGERLVQLMDSVD 77
>gi|297599922|ref|NP_001048118.2| Os02g0747900 [Oryza sativa Japonica Group]
gi|255671251|dbj|BAF10032.2| Os02g0747900 [Oryza sativa Japonica Group]
Length = 53
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 41/50 (82%), Gaps = 2/50 (4%)
Query: 42 KVSAGKVLQETCNYIRSLHREVDDLSERLSELLATTD--TAQAAIIRSLL 89
+ S K+L+ETCNYI+SLHREVDDLS+RLS+L+AT D + A IIRS+L
Sbjct: 2 QASTTKLLKETCNYIKSLHREVDDLSDRLSDLMATMDHNSPGAEIIRSIL 51
>gi|218186013|gb|EEC68440.1| hypothetical protein OsI_36646 [Oryza sativa Indica Group]
Length = 77
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL------- 73
+ +L+SKLQ +LP + K S+ +VLQE C YIR LHRE D LSERL+EL
Sbjct: 1 MAELISKLQAVLPTRGGEANAKASSAEVLQEACRYIRRLHREADALSERLAELLLLQPSD 60
Query: 74 LATTDTAQAAIIRSLLM 90
LA +IRSLLM
Sbjct: 61 LAINGADVPDLIRSLLM 77
>gi|124359232|gb|ABD32217.2| hypothetical protein MtrDRAFT_AC148762g31v2 [Medicago truncatula]
gi|124360945|gb|ABN08917.1| hypothetical protein MtrDRAFT_AC166313g28v2 [Medicago truncatula]
Length = 49
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 36/42 (85%)
Query: 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDK 42
MSSRRSR + GS+RI+DDQI DLV KL+QL+PE+RN RSDK
Sbjct: 1 MSSRRSRQQSGGSTRISDDQIIDLVCKLRQLVPEIRNRRSDK 42
>gi|356519054|ref|XP_003528189.1| PREDICTED: transcription factor bHLH135-like [Glycine max]
Length = 91
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 6 SRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAG--KVLQETCNYIRSLHREV 63
S R +S+ T+ +INDL+ +LQ LLP+L R+ + S K+++ETC++I L EV
Sbjct: 2 SGQRNFRTSKFTESEINDLMLRLQALLPQLNQTRNSRASESLMKIMKETCSHINRLQNEV 61
Query: 64 DDLSERLSELLATTD 78
DL ERL+EL+ + D
Sbjct: 62 KDLGERLAELIDSVD 76
>gi|357505411|ref|XP_003622994.1| DNA-binding protein-like protein [Medicago truncatula]
gi|355498009|gb|AES79212.1| DNA-binding protein-like protein [Medicago truncatula]
Length = 89
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 53/73 (72%)
Query: 6 SRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDD 65
S R S S++ + QINDLVS+LQ LLP+L + + SA K+LQET N+IR L +EV+D
Sbjct: 2 SSQRNSRDSKLKEKQINDLVSRLQLLLPQLNQRNNSRQSASKILQETLNHIRRLQKEVED 61
Query: 66 LSERLSELLATTD 78
LSERL++L+ + D
Sbjct: 62 LSERLTQLMDSVD 74
>gi|383100979|emb|CCD74522.1| unknown [Arabidopsis halleri subsp. halleri]
Length = 164
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 31/35 (88%)
Query: 45 AGKVLQETCNYIRSLHREVDDLSERLSELLATTDT 79
A KVLQETCNYIR+L++EVDDLS+RL++LL + D
Sbjct: 124 ASKVLQETCNYIRNLNKEVDDLSDRLTQLLESIDP 158
>gi|56407689|gb|AAV88077.1| hypothetical bHLH family protein [Ipomoea batatas]
Length = 198
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 28/33 (84%)
Query: 10 QSGSSRITDDQINDLVSKLQQLLPELRNNRSDK 42
Q +SRI+DDQI DLVSKLQ+L+PE+R RSDK
Sbjct: 10 QPETSRISDDQIADLVSKLQRLIPEIRGRRSDK 42
>gi|123449445|ref|XP_001313441.1| viral A-type inclusion protein [Trichomonas vaginalis G3]
gi|121895325|gb|EAY00512.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3]
Length = 1798
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVD 64
R+RS + G + I Q DL+SKLQQ + L NN D SA YI SLH+E+D
Sbjct: 709 RNRSNE-GDAEIVKTQA-DLISKLQQQIQSLSNNPLD-FSAK------DQYINSLHQEID 759
Query: 65 DLSERLSELLATTDTAQ 81
+L +RL+E A T Q
Sbjct: 760 ELKQRLNENAAKVVTPQ 776
>gi|212721174|ref|NP_001132848.1| putative HLH DNA-binding domain superfamily protein isoform 1 [Zea
mays]
gi|194695568|gb|ACF81868.1| unknown [Zea mays]
gi|414586588|tpg|DAA37159.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 1
[Zea mays]
gi|414586589|tpg|DAA37160.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 2
[Zea mays]
Length = 167
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Query: 1 MSSRRSRSRQSGSSRITD-------DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETC 53
MSS++ R R S S R D+I + V+ LQQL+ K VLQE
Sbjct: 43 MSSKKPRPRNSNSPRTAPVSPKEKKDRIGERVAALQQLVSPF-----GKTDTASVLQEAS 97
Query: 54 NYIRSLHREVDDLS 67
YIR LH+++ LS
Sbjct: 98 GYIRFLHQQLQVLS 111
>gi|219888191|gb|ACL54470.1| unknown [Zea mays]
gi|414586590|tpg|DAA37161.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 1
[Zea mays]
gi|414586591|tpg|DAA37162.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 2
[Zea mays]
gi|414586592|tpg|DAA37163.1| TPA: putative HLH DNA-binding domain superfamily protein isoform 3
[Zea mays]
Length = 163
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 18/92 (19%)
Query: 1 MSSRRSRSRQSGSSRITD-------DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETC 53
MSS++ R R S S R D+I + V+ LQQL+ ++D S VLQE
Sbjct: 43 MSSKKPRPRNSNSPRTAPVSPKEKKDRIGERVAALQQLVSPF--GKTDTAS---VLQEAS 97
Query: 54 NYIRSLHRE----VDDLSERLSELLATTDTAQ 81
YIR LH++ V ++ R+ + TT +A
Sbjct: 98 GYIRFLHQQLQVGVPPVTARM--VAGTTSSAP 127
>gi|414586593|tpg|DAA37164.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 206
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 1 MSSRRSRSRQSGSSRITD-------DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETC 53
MSS++ R R S S R D+I + V+ LQQL+ K VLQE
Sbjct: 43 MSSKKPRPRNSNSPRTAPVSPKEKKDRIGERVAALQQLVSPF-----GKTDTASVLQEAS 97
Query: 54 NYIRSLHREV 63
YIR LH+++
Sbjct: 98 GYIRFLHQQL 107
>gi|297276772|ref|XP_001111345.2| PREDICTED: hypothetical protein LOC718527 [Macaca mulatta]
Length = 723
Score = 38.9 bits (89), Expect = 0.39, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 612 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 671
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 672 QRMQETFKE 680
>gi|242012493|ref|XP_002426967.1| Upstream stimulatory factor, putative [Pediculus humanus corporis]
gi|212511196|gb|EEB14229.1| Upstream stimulatory factor, putative [Pediculus humanus corporis]
Length = 339
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 19 DQINDLVSKLQQLLPE---LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ ++KL +++P+ + NN+S + S G +L + C YI L R + LS+ + E+
Sbjct: 233 DKINNWIAKLSKIIPDCSSMDNNKSVQ-SKGGILAKACEYIMELRRAEEQLSDCVKEI 289
>gi|326505558|dbj|BAJ95450.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 387
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 2 SSRRSRSRQ--SGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSL 59
S RRSR+ + + S R D+IN+ + LQ+L+P N++DK S +L E Y++SL
Sbjct: 192 SKRRSRAAEVHNQSERRRRDRINEKMRSLQELIPHC--NKADKAS---ILDEAIEYLKSL 246
Query: 60 HREV 63
+V
Sbjct: 247 QMQV 250
>gi|326487850|dbj|BAJ89764.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508951|dbj|BAJ86868.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 396
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 2 SSRRSRSRQ--SGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSL 59
S RRSR+ + + S R D+IN+ + LQ+L+P N++DK S +L E Y++SL
Sbjct: 201 SKRRSRAAEVHNQSERRRRDRINEKMRSLQELIPHC--NKADKAS---ILDEAIEYLKSL 255
Query: 60 HREV 63
+V
Sbjct: 256 QMQV 259
>gi|354506619|ref|XP_003515357.1| PREDICTED: upstream stimulatory factor 2-like [Cricetulus griseus]
Length = 212
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + L E E
Sbjct: 109 DKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTNQRLQETFKE 163
>gi|414871802|tpg|DAA50359.1| TPA: putative HLH DNA-binding domain superfamily protein [Zea mays]
Length = 562
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 2 SSRRSRSRQ--SGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSL 59
++RRSR+ + + S R D+IN+ + LQ+L+P N++DK S +L E Y++SL
Sbjct: 328 TARRSRAAEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKAS---MLDEAIEYLKSL 382
Query: 60 HREV 63
+V
Sbjct: 383 QLQV 386
>gi|226493691|ref|NP_001147809.1| PIL5 [Zea mays]
gi|195613866|gb|ACG28763.1| PIL5 [Zea mays]
Length = 539
Score = 37.0 bits (84), Expect = 1.7, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 2 SSRRSRSRQ--SGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSL 59
++RRSR+ + + S R D+IN+ + LQ+L+P N++DK S +L E Y++SL
Sbjct: 328 TARRSRAAEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKAS---MLDEAIEYLKSL 382
Query: 60 HREV 63
+V
Sbjct: 383 QLQV 386
>gi|328772819|gb|EGF82857.1| hypothetical protein BATDEDRAFT_23083 [Batrachochytrium dendrobatidis
JAM81]
Length = 3415
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 4 RRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREV 63
RR R + R D IN+ + +L LLPE ++ +K + G +L+ + +YIR +
Sbjct: 3302 RRRRESHNAVERRRRDHINEKIHELSNLLPEFASDIQNKPNKGVILRRSVDYIRHMQLFA 3361
Query: 64 DDLSERLSEL 73
ER EL
Sbjct: 3362 AKQMERTMEL 3371
>gi|471124|dbj|BAA02988.1| Id-1H [Homo sapiens]
Length = 154
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 6 SRSRQSGS--SRITDDQ--------INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNY 55
SR R +G+ + D+Q +N S+L++L+P L NR KVS ++LQ +Y
Sbjct: 43 SRCRGAGARLPALLDEQQVNVLLYDMNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDY 100
Query: 56 IRSLHREVDDLSE 68
IR L E++ SE
Sbjct: 101 IRDLQLELNSESE 113
>gi|457785|emb|CAA54920.1| Id1 [Homo sapiens]
gi|1090511|prf||2019241A Id-1 protein
Length = 154
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 6 SRSRQSGS--SRITDDQ--------INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNY 55
SR R +G+ + D+Q +N S+L++L+P L NR KVS ++LQ +Y
Sbjct: 43 SRCRGAGARLPALLDEQQVNVLLYDMNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDY 100
Query: 56 IRSLHREVDDLSE 68
IR L E++ SE
Sbjct: 101 IRDLQLELNSESE 113
>gi|395535320|ref|XP_003769676.1| PREDICTED: upstream stimulatory factor 1 [Sarcophilus harrisii]
Length = 310
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + N +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMENTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|334323839|ref|XP_001381670.2| PREDICTED: upstream stimulatory factor 1-like [Monodelphis
domestica]
Length = 310
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + N +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMENTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|55926121|ref|NP_001007486.1| upstream stimulatory factor 1 [Gallus gallus]
gi|55540924|gb|AAV52917.1| upstream stimulatory factor 1 [Gallus gallus]
Length = 310
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + N +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMENTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|402905160|ref|XP_003915391.1| PREDICTED: upstream stimulatory factor 2, partial [Papio anubis]
Length = 343
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 232 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 291
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 292 QRMQETFKE 300
>gi|194384786|dbj|BAG59553.1| unnamed protein product [Homo sapiens]
Length = 349
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 233 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 292
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 293 QRMQETFKE 301
>gi|471125|dbj|BAA02989.1| Id-1H' [Homo sapiens]
Length = 148
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 6 SRSRQSGS--SRITDDQ--------INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNY 55
SR R +G+ + D+Q +N S+L++L+P L NR KVS ++LQ +Y
Sbjct: 43 SRCRGAGARLPALLDEQQVNVLLYDMNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDY 100
Query: 56 IRSLHREVDDLSE 68
IR L E++ SE
Sbjct: 101 IRDLQLELNSESE 113
>gi|224069945|ref|XP_002303090.1| predicted protein [Populus trichocarpa]
gi|222844816|gb|EEE82363.1| predicted protein [Populus trichocarpa]
Length = 615
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 7/69 (10%)
Query: 1 MSSRRSRSRQSG--SSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRS 58
MSS+RSR+ + S R D+IN+ + LQ+L+P R N+SDK S +L E Y++S
Sbjct: 361 MSSKRSRAAEVHNLSERRRRDRINEKMRALQELIP--RCNKSDKAS---MLDEAIEYLKS 415
Query: 59 LHREVDDLS 67
L +V +S
Sbjct: 416 LQLQVQMMS 424
>gi|354480309|ref|XP_003502350.1| PREDICTED: hypothetical protein LOC100774183 [Cricetulus griseus]
Length = 287
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 201 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 246
>gi|301771025|ref|XP_002920933.1| PREDICTED: upstream stimulatory factor 2-like [Ailuropoda
melanoleuca]
Length = 333
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 222 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 281
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 282 QRMQETFKE 290
>gi|356545930|ref|XP_003541386.1| PREDICTED: transcription factor PIF1-like [Glycine max]
Length = 476
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Query: 2 SSRRSRSRQ--SGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSL 59
S++RSR+ + + S R D+IN+ + LQ+L+P R N+SDK S +L E Y++SL
Sbjct: 258 STKRSRAAEVHNLSERRRRDRINEKMKALQELIP--RCNKSDKAS---MLDEAIEYLKSL 312
Query: 60 HREVDDLS 67
+V +S
Sbjct: 313 QLQVQMMS 320
>gi|291222431|ref|XP_002731221.1| PREDICTED: beta-1,4-N-acetyl-galactosaminyl transferase 1-like
[Saccoglossus kowalevskii]
Length = 698
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 15 RITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQET----CNYIRSLHREVDDLSE-- 68
+TDD +KL+ LL E+ N+ D V AG V + C S+H+ V+ LS
Sbjct: 293 HVTDDMYFTHATKLEVLLVEMENSTYDIVGAG-VWENNNNTDCTNHISVHKSVEQLSGSC 351
Query: 69 RLSELLATTDTAQAAIIRSLLM 90
R++E + A+ A++R +++
Sbjct: 352 RMTESIPIFFLAKTAVLREIMI 373
>gi|49168494|emb|CAG38742.1| USF2 [Homo sapiens]
Length = 346
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 235 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 294
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 295 QRMQETFKE 303
>gi|334328594|ref|XP_003341097.1| PREDICTED: upstream stimulatory factor 2-like [Monodelphis
domestica]
Length = 357
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 246 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNTDNSKTGASKGGILSKACDYIRELRQTN 305
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 306 QRMQETFKE 314
>gi|4507847|ref|NP_003358.1| upstream stimulatory factor 2 isoform 1 [Homo sapiens]
gi|2833271|sp|Q15853.1|USF2_HUMAN RecName: Full=Upstream stimulatory factor 2; AltName: Full=Class B
basic helix-loop-helix protein 12; Short=bHLHb12;
AltName: Full=FOS-interacting protein; Short=FIP;
AltName: Full=Major late transcription factor 2;
AltName: Full=Upstream transcription factor 2
gi|1279511|emb|CAA62341.1| USF2a, USF2b protein [Homo sapiens]
gi|1806094|emb|CAA68942.1| USF2 [Homo sapiens]
gi|1905919|gb|AAB51179.1| upstream stimulatory factor 2 [Homo sapiens]
gi|29612623|gb|AAH49821.1| Upstream transcription factor 2, c-fos interacting [Homo sapiens]
gi|261859850|dbj|BAI46447.1| upstream transcription factor 2, c-fos interacting [synthetic
construct]
gi|410218104|gb|JAA06271.1| upstream transcription factor 2, c-fos interacting [Pan
troglodytes]
gi|410249530|gb|JAA12732.1| upstream transcription factor 2, c-fos interacting [Pan
troglodytes]
gi|410249534|gb|JAA12734.1| upstream transcription factor 2, c-fos interacting [Pan
troglodytes]
gi|410296832|gb|JAA27016.1| upstream transcription factor 2, c-fos interacting [Pan
troglodytes]
Length = 346
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 235 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 294
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 295 QRMQETFKE 303
>gi|417399333|gb|JAA46689.1| Putative helix loop helix transcription factor eb [Desmodus
rotundus]
Length = 346
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 235 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 294
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 295 QRMQETFKE 303
>gi|311257380|ref|XP_003127089.1| PREDICTED: upstream stimulatory factor 2 isoform 1 [Sus scrofa]
Length = 346
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 235 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 294
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 295 QRMQETFKE 303
>gi|151556999|gb|AAI49553.1| Upstream transcription factor 2, c-fos interacting [Bos taurus]
Length = 346
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 235 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 294
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 295 QRMQETFKE 303
>gi|395846934|ref|XP_003796143.1| PREDICTED: upstream stimulatory factor 2 [Otolemur garnettii]
Length = 346
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 235 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 294
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 295 QRMQETFKE 303
>gi|344244191|gb|EGW00295.1| DNA-binding protein inhibitor ID-1 [Cricetulus griseus]
Length = 157
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 65 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 110
>gi|74147177|dbj|BAE27494.1| unnamed protein product [Mus musculus]
Length = 343
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 232 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTN 291
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 292 QRMQETFKE 300
>gi|374335084|ref|YP_005091771.1| Fe3+-citrate ABC transporter periplasmic protein [Oceanimonas sp.
GK1]
gi|372984771|gb|AEY01021.1| Fe3+-citrate ABC transporter periplasmic protein [Oceanimonas sp.
GK1]
Length = 293
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 16 ITDDQINDLVSKLQQLLPEL--RNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
IT DQ DLV++LQQ+ P L N D +A R+LHRE + + +RL+EL
Sbjct: 94 ITGDQQGDLVARLQQIAPVLHFENFSRDHNNAEAARAGFLQLARALHREAEAV-QRLAEL 152
Query: 74 LAT 76
AT
Sbjct: 153 DAT 155
>gi|124504632|gb|AAI28736.1| Upstream transcription factor 2 [Rattus norvegicus]
Length = 346
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 235 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTN 294
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 295 QRMQETFKE 303
>gi|6755945|ref|NP_035810.1| upstream stimulatory factor 2 [Mus musculus]
gi|13592125|ref|NP_112401.1| upstream stimulatory factor 2 [Rattus norvegicus]
gi|2842675|sp|Q64705.1|USF2_MOUSE RecName: Full=Upstream stimulatory factor 2; AltName: Full=Major
late transcription factor 2; AltName: Full=Upstream
transcription factor 2
gi|83305812|sp|Q63665.2|USF2_RAT RecName: Full=Upstream stimulatory factor 2; AltName: Full=Major
late transcription factor 2; AltName: Full=Upstream
transcription factor 2
gi|25358132|pir||JC7638 upstream stimulatory factor 2, USF2FL isoform - rat
gi|402874|gb|AAA20492.1| USF2 [Mus musculus]
gi|595479|gb|AAB60674.1| USF2 [Mus musculus]
gi|11994802|dbj|BAB19964.1| USF2 [Rattus norvegicus]
gi|12246832|dbj|BAB20993.1| transcription factor USF2 [Rattus norvegicus]
gi|53236924|gb|AAH82995.1| Upstream transcription factor 2 [Mus musculus]
Length = 346
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 235 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTN 294
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 295 QRMQETFKE 303
>gi|71994962|ref|NP_001023412.1| Protein HLH-30, isoform d [Caenorhabditis elegans]
gi|351062577|emb|CCD70590.1| Protein HLH-30, isoform d [Caenorhabditis elegans]
Length = 464
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 21 INDLVSKLQQLLPELRNNRSD-KVSAGKVLQETCNYIRSLHRE 62
IND + +L Q+LP +N D K++ G +L+ +C+YIR L ++
Sbjct: 219 INDRIKELGQMLP--KNTSEDMKLNKGTILKASCDYIRVLQKD 259
>gi|71994958|ref|NP_001023411.1| Protein HLH-30, isoform c [Caenorhabditis elegans]
gi|351062576|emb|CCD70589.1| Protein HLH-30, isoform c [Caenorhabditis elegans]
Length = 524
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 21 INDLVSKLQQLLPELRNNRSD-KVSAGKVLQETCNYIRSLHRE 62
IND + +L Q+LP +N D K++ G +L+ +C+YIR L ++
Sbjct: 279 INDRIKELGQMLP--KNTSEDMKLNKGTILKASCDYIRVLQKD 319
>gi|384949246|gb|AFI38228.1| upstream stimulatory factor 2 isoform 1 [Macaca mulatta]
gi|387542140|gb|AFJ71697.1| upstream stimulatory factor 2 isoform 1 [Macaca mulatta]
Length = 346
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 235 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 294
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 295 QRMQETFKE 303
>gi|341894681|gb|EGT50616.1| CBN-HLH-30 protein [Caenorhabditis brenneri]
Length = 449
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 21 INDLVSKLQQLLPELRNNRSD-KVSAGKVLQETCNYIRSLHRE 62
IND + +L Q+LP +N D K++ G +L+ +C+YIR L ++
Sbjct: 267 INDRIKELGQMLP--KNTSEDMKLNKGTILKASCDYIRVLQKD 307
>gi|17542746|ref|NP_500462.1| Protein HLH-30, isoform a [Caenorhabditis elegans]
gi|351062574|emb|CCD70587.1| Protein HLH-30, isoform a [Caenorhabditis elegans]
Length = 498
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 21 INDLVSKLQQLLPELRNNRSD-KVSAGKVLQETCNYIRSLHRE 62
IND + +L Q+LP +N D K++ G +L+ +C+YIR L ++
Sbjct: 253 INDRIKELGQMLP--KNTSEDMKLNKGTILKASCDYIRVLQKD 293
>gi|410300594|gb|JAA28897.1| inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein [Pan troglodytes]
Length = 149
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 69 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 114
>gi|242038745|ref|XP_002466767.1| hypothetical protein SORBIDRAFT_01g013843 [Sorghum bicolor]
gi|241920621|gb|EER93765.1| hypothetical protein SORBIDRAFT_01g013843 [Sorghum bicolor]
Length = 535
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 7/64 (10%)
Query: 2 SSRRSRSRQ--SGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSL 59
++RRSR+ + + S R D+IN+ + LQ+L+P N++DK S +L E Y++SL
Sbjct: 323 TARRSRAAEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKAS---MLDEAIEYLKSL 377
Query: 60 HREV 63
+V
Sbjct: 378 QLQV 381
>gi|410911614|ref|XP_003969285.1| PREDICTED: upstream stimulatory factor 2-like [Takifugu rubripes]
Length = 324
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 19 DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + L +++P+ + S G +L + C+YIR L + L E E+
Sbjct: 228 DKINNWIVTLSKIIPDCSVDSRTGASKGGILSKACDYIRELRQNNQQLQESYKEV 282
>gi|403292772|ref|XP_003937405.1| PREDICTED: upstream stimulatory factor 2, partial [Saimiri
boliviensis boliviensis]
Length = 332
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 221 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 280
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 281 QRMQETFKE 289
>gi|291411986|ref|XP_002722281.1| PREDICTED: upstream stimulatory factor 2 [Oryctolagus cuniculus]
Length = 319
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 208 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 267
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 268 QRMQETFKE 276
>gi|71994975|ref|NP_001023415.1| Protein HLH-30, isoform g [Caenorhabditis elegans]
gi|351062580|emb|CCD70593.1| Protein HLH-30, isoform g [Caenorhabditis elegans]
Length = 437
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 21 INDLVSKLQQLLPELRNNRSD-KVSAGKVLQETCNYIRSLHRE 62
IND + +L Q+LP +N D K++ G +L+ +C+YIR L ++
Sbjct: 253 INDRIKELGQMLP--KNTSEDMKLNKGTILKASCDYIRVLQKD 293
>gi|281354270|gb|EFB29854.1| hypothetical protein PANDA_009747 [Ailuropoda melanoleuca]
Length = 326
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 215 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 274
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 275 QRMQETFKE 283
>gi|421769115|ref|ZP_16205824.1| hypothetical protein LRHMDP2_1162 [Lactobacillus rhamnosus LRHMDP2]
gi|421771378|ref|ZP_16208038.1| hypothetical protein LRHMDP3_468 [Lactobacillus rhamnosus LRHMDP3]
gi|411185511|gb|EKS52639.1| hypothetical protein LRHMDP2_1162 [Lactobacillus rhamnosus LRHMDP2]
gi|411185964|gb|EKS53090.1| hypothetical protein LRHMDP3_468 [Lactobacillus rhamnosus LRHMDP3]
Length = 339
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 10/69 (14%)
Query: 12 GSSRITDDQINDLVSKLQQLL--PELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSER 69
G+ +++ Q++ L++ ++ ++ PEL+NN++D+ A K + +R +H EV +L ER
Sbjct: 73 GTEKLSPVQVHVLLATVKTIINEPELQNNQADRAIATKKI------VRQVHSEVTELDER 126
Query: 70 LSELLATTD 78
ELL T D
Sbjct: 127 --ELLRTID 133
>gi|323388959|gb|ADX60284.1| bHLH transcription factor [Oryza sativa Japonica Group]
Length = 437
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 3 SRRSRSRQSGS--SRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKV-LQETCNYIRSL 59
+RR ++ S S R+ ++I++ + LQ L+P KV+ V L E NY++SL
Sbjct: 262 ARRGQATNSHSLAERVRREKISERMKYLQDLVPG-----CSKVTGKAVMLDEIINYVQSL 316
Query: 60 HREVDDLSERLSELLATTD 78
R+V+ LS +L+ + T D
Sbjct: 317 QRQVEFLSMKLASVNPTLD 335
>gi|115467562|ref|NP_001057380.1| Os06g0275600 [Oryza sativa Japonica Group]
gi|55295989|dbj|BAD68029.1| putative TA1 protein [Oryza sativa Japonica Group]
gi|113595420|dbj|BAF19294.1| Os06g0275600 [Oryza sativa Japonica Group]
Length = 437
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 3 SRRSRSRQSGS--SRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKV-LQETCNYIRSL 59
+RR ++ S S R+ ++I++ + LQ L+P KV+ V L E NY++SL
Sbjct: 262 ARRGQATNSHSLAERVRREKISERMKYLQDLVPG-----CSKVTGKAVMLDEIINYVQSL 316
Query: 60 HREVDDLSERLSELLATTD 78
R+V+ LS +L+ + T D
Sbjct: 317 QRQVEFLSMKLASVNPTLD 335
>gi|410300592|gb|JAA28896.1| inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein [Pan troglodytes]
Length = 155
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 69 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 114
>gi|71994981|ref|NP_001023416.1| Protein HLH-30, isoform h [Caenorhabditis elegans]
gi|351062581|emb|CCD70594.1| Protein HLH-30, isoform h [Caenorhabditis elegans]
Length = 361
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 21 INDLVSKLQQLLPELRNNRSD-KVSAGKVLQETCNYIRSLHRE 62
IND + +L Q+LP +N D K++ G +L+ +C+YIR L ++
Sbjct: 116 INDRIKELGQMLP--KNTSEDMKLNKGTILKASCDYIRVLQKD 156
>gi|348561644|ref|XP_003466622.1| PREDICTED: upstream stimulatory factor 2-like [Cavia porcellus]
Length = 344
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 233 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 292
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 293 QRMQETFKE 301
>gi|12842342|dbj|BAB25564.1| unnamed protein product [Mus musculus]
Length = 168
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 62 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 107
>gi|2827752|sp|P20067.3|ID1_MOUSE RecName: Full=DNA-binding protein inhibitor ID-1; AltName:
Full=Inhibitor of DNA binding 1
gi|1244793|gb|AAC52760.1| Id1B [Mus musculus]
Length = 168
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 62 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 107
>gi|729805|sp|P41135.1|ID1_RAT RecName: Full=DNA-binding protein inhibitor ID-1; AltName:
Full=Inhibitor of DNA binding 1
gi|516115|gb|AAA20403.1| Id protein [Rattus norvegicus]
gi|149031023|gb|EDL86050.1| inhibitor of DNA binding 1, isoform CRA_b [Rattus norvegicus]
Length = 164
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 62 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 107
>gi|380797705|gb|AFE70728.1| upstream stimulatory factor 2 isoform 1, partial [Macaca mulatta]
Length = 330
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 219 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 278
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 279 QRMQETFKE 287
>gi|218197962|gb|EEC80389.1| hypothetical protein OsI_22515 [Oryza sativa Indica Group]
Length = 494
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 3 SRRSRSRQSGS--SRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKV-LQETCNYIRSL 59
+RR ++ S S R+ ++I++ + LQ L+P KV+ V L E NY++SL
Sbjct: 319 ARRGQATNSHSLAERVRREKISERMKYLQDLVPG-----CSKVTGKAVMLDEIINYVQSL 373
Query: 60 HREVDDLSERLSELLATTD 78
R+V+ LS +L+ + T D
Sbjct: 374 QRQVEFLSMKLASVNPTLD 392
>gi|1279663|emb|CAA62338.1| USF2a, USF2b protein [Rattus norvegicus]
Length = 291
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 194 DKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 248
>gi|71994970|ref|NP_001023414.1| Protein HLH-30, isoform f [Caenorhabditis elegans]
gi|351062579|emb|CCD70592.1| Protein HLH-30, isoform f [Caenorhabditis elegans]
Length = 473
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 21 INDLVSKLQQLLPELRNNRSD-KVSAGKVLQETCNYIRSLHRE 62
IND + +L Q+LP +N D K++ G +L+ +C+YIR L ++
Sbjct: 228 INDRIKELGQMLP--KNTSEDMKLNKGTILKASCDYIRVLQKD 268
>gi|195635249|gb|ACG37093.1| ER33 protein [Zea mays]
Length = 162
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 1 MSSRRSRSRQSG-----SSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNY 55
MSS++ R+ S S + D+I + V+ LQQL+ K VLQE Y
Sbjct: 40 MSSKKPRNSNSPRTAPVSPKEKKDRIGERVAALQQLVSPF-----GKTDTASVLQEASGY 94
Query: 56 IRSLHREVDDLS 67
IR LH+++ LS
Sbjct: 95 IRFLHQQLQVLS 106
>gi|355784595|gb|EHH65446.1| Inhibitor of DNA binding 1 [Macaca fascicularis]
Length = 154
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 68 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 113
>gi|148692028|gb|EDL23975.1| upstream transcription factor 2, isoform CRA_a [Mus musculus]
Length = 326
Score = 35.8 bits (81), Expect = 3.3, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 215 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTN 274
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 275 QRMQETFKE 283
>gi|23308661|ref|NP_694499.1| DNA-binding protein inhibitor ID-3 [Danio rerio]
gi|19908229|gb|AAL40892.1| helix-loop-helix protein [Danio rerio]
gi|44890294|gb|AAH66743.1| Id3 protein [Danio rerio]
gi|156230113|gb|AAI52277.1| Inhibitor of DNA binding 3 [Danio rerio]
Length = 116
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 10 QSGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSL 59
+S S ++D +ND SKL++L+P + N+S VS ++LQ +YI L
Sbjct: 31 KSPSEELSDMNMNDCYSKLKELVPSIPQNKS--VSQVEILQHVIDYIFDL 78
>gi|403281322|ref|XP_003932141.1| PREDICTED: DNA-binding protein inhibitor ID-1 [Saimiri boliviensis
boliviensis]
Length = 154
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 68 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 113
>gi|293334599|ref|NP_001169154.1| uncharacterized protein LOC100383001 [Zea mays]
gi|223975203|gb|ACN31789.1| unknown [Zea mays]
Length = 162
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 1 MSSRRSRSRQSG-----SSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNY 55
MSS++ R+ S S + D+I + V+ LQQL+ K VLQE Y
Sbjct: 40 MSSKKPRNSNSPRTAPVSPKEKKDRIGERVAALQQLVSPF-----GKTDTASVLQEASGY 94
Query: 56 IRSLHREVDDLS 67
IR LH+++ LS
Sbjct: 95 IRFLHQQLQVLS 106
>gi|47211072|emb|CAF89687.1| unnamed protein product [Tetraodon nigroviridis]
Length = 355
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 19 DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + L +++P+ + S G +L + C+YIR L + L E E+
Sbjct: 259 DKINNWIVTLSKIIPDCSLDSRTGASKGGILSKACDYIRELRQNNQQLQESYKEV 313
>gi|148674040|gb|EDL05987.1| inhibitor of DNA binding 1, isoform CRA_b [Mus musculus]
Length = 197
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 91 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 136
>gi|434789|dbj|BAA01633.1| ID1 protein [Rattus norvegicus]
Length = 148
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 62 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 107
>gi|432883788|ref|XP_004074353.1| PREDICTED: upstream stimulatory factor 2-like [Oryzias latipes]
Length = 305
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 19 DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + L +L+P+ + S G +L + C+YIR L + L E E+
Sbjct: 209 DKINNWIVTLSKLIPDCSVDSRSAASKGGILSKACDYIRELRQNNQRLQESCKEV 263
>gi|308468157|ref|XP_003096322.1| CRE-HLH-30 protein [Caenorhabditis remanei]
gi|308243237|gb|EFO87189.1| CRE-HLH-30 protein [Caenorhabditis remanei]
Length = 631
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 21 INDLVSKLQQLLPELRNNRSD-KVSAGKVLQETCNYIRSLHRE 62
IND + +L Q+LP +N D K++ G +L+ +C+YIR L ++
Sbjct: 385 INDRIKELGQMLP--KNTSEDMKLNKGTILKASCDYIRVLQKD 425
>gi|31317297|ref|NP_851998.1| DNA-binding protein inhibitor ID-1 isoform b [Homo sapiens]
gi|1042080|gb|AAB35038.1| transcription regulator helix-loop-helix protein [Homo sapiens]
gi|1816513|gb|AAC13883.1| helix-loop-helix protein Id-1' [Homo sapiens]
gi|208966550|dbj|BAG73289.1| inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein [synthetic construct]
gi|410355555|gb|JAA44381.1| inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein [Pan troglodytes]
Length = 149
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 69 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 114
>gi|291388752|ref|XP_002710904.1| PREDICTED: inhibitor of DNA binding 1-like [Oryctolagus cuniculus]
Length = 154
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 13/74 (17%)
Query: 6 SRSRQSGSSRIT---DDQ--------INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCN 54
SR G +R+ D+Q +N S+L++L+P L NR KVS ++LQ +
Sbjct: 42 SRCAGGGGTRLPALLDEQQVNVLLYDMNGCYSRLKELVPTLPQNR--KVSKVEILQHVID 99
Query: 55 YIRSLHREVDDLSE 68
YIR L E++ +E
Sbjct: 100 YIRDLQLELNSEAE 113
>gi|380812394|gb|AFE78071.1| DNA-binding protein inhibitor ID-1 isoform b [Macaca mulatta]
Length = 148
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 68 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 113
>gi|82617572|ref|NP_036929.2| DNA-binding protein inhibitor ID-1 [Rattus norvegicus]
gi|203962|gb|AAA41090.1| inhibitor of DNA binding [Rattus norvegicus]
gi|117558621|gb|AAI27449.1| Inhibitor of DNA binding 1 [Rattus norvegicus]
gi|149031022|gb|EDL86049.1| inhibitor of DNA binding 1, isoform CRA_a [Rattus norvegicus]
Length = 148
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 62 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 107
>gi|351714246|gb|EHB17165.1| DNA-binding protein inhibitor ID-1 [Heterocephalus glaber]
Length = 151
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 65 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 110
>gi|395860719|ref|XP_003802655.1| PREDICTED: DNA-binding protein inhibitor ID-1 [Otolemur garnettii]
Length = 154
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 68 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 113
>gi|359318841|ref|XP_855488.3| PREDICTED: upstream stimulatory factor 2 [Canis lupus familiaris]
Length = 430
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 333 DKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 387
>gi|296199908|ref|XP_002747402.1| PREDICTED: DNA-binding protein inhibitor ID-1 [Callithrix jacchus]
Length = 155
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 69 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 114
>gi|30585403|gb|AAP36974.1| Homo sapiens inhibitor of DNA binding 1, dominant negative
helix-loop-helix protein [synthetic construct]
gi|61372114|gb|AAX43787.1| inhibitor of DNA binding 1 [synthetic construct]
gi|61372123|gb|AAX43788.1| inhibitor of DNA binding 1 [synthetic construct]
Length = 156
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 69 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 114
>gi|31317299|ref|NP_002156.2| DNA-binding protein inhibitor ID-1 isoform a [Homo sapiens]
gi|114681405|ref|XP_001152873.1| PREDICTED: DNA-binding protein inhibitor ID-1 isoform 1 [Pan
troglodytes]
gi|426391264|ref|XP_004061997.1| PREDICTED: DNA-binding protein inhibitor ID-1 [Gorilla gorilla
gorilla]
gi|21264450|sp|P41134.3|ID1_HUMAN RecName: Full=DNA-binding protein inhibitor ID-1; AltName:
Full=Class B basic helix-loop-helix protein 24;
Short=bHLHb24; AltName: Full=Inhibitor of DNA binding 1
gi|1042078|gb|AAB35037.1| transcription regulator helix-loop-helix protein [Homo sapiens]
gi|1816512|gb|AAC13882.1| helix-loop-helix protein Id-1 [Homo sapiens]
gi|12653661|gb|AAH00613.1| Inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein [Homo sapiens]
gi|15214589|gb|AAH12420.1| Inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein [Homo sapiens]
gi|30583725|gb|AAP36111.1| inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein [Homo sapiens]
gi|60655203|gb|AAX32165.1| inhibitor of DNA binding 1 dominant negative helix-loop-helix
protein [synthetic construct]
gi|61355326|gb|AAX41127.1| inhibitor of DNA binding 1 [synthetic construct]
gi|119596838|gb|EAW76432.1| inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein, isoform CRA_a [Homo sapiens]
gi|119596840|gb|EAW76434.1| inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein, isoform CRA_a [Homo sapiens]
gi|123980780|gb|ABM82219.1| inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein [synthetic construct]
gi|123993333|gb|ABM84268.1| inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein [synthetic construct]
gi|123995603|gb|ABM85403.1| inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein [synthetic construct]
gi|124000295|gb|ABM87656.1| inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein [synthetic construct]
gi|157928626|gb|ABW03609.1| inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein [synthetic construct]
gi|157929248|gb|ABW03909.1| inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein [synthetic construct]
gi|157929268|gb|ABW03919.1| inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein [synthetic construct]
gi|158255740|dbj|BAF83841.1| unnamed protein product [Homo sapiens]
gi|410218786|gb|JAA06612.1| inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein [Pan troglodytes]
gi|410355553|gb|JAA44380.1| inhibitor of DNA binding 1, dominant negative helix-loop-helix
protein [Pan troglodytes]
Length = 155
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 69 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 114
>gi|397527122|ref|XP_003833451.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein inhibitor ID-1
[Pan paniscus]
Length = 162
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 76 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 121
>gi|31077096|ref|NP_034625.1| DNA-binding protein inhibitor ID-1 [Mus musculus]
gi|19263559|gb|AAH25073.1| Inhibitor of DNA binding 1 [Mus musculus]
gi|71059815|emb|CAJ18451.1| Idb1 [Mus musculus]
Length = 148
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 62 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 107
>gi|290767965|gb|ADD60674.1| putative TA1 protein [Oryza granulata]
Length = 430
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 3 SRRSRSRQSGS--SRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKV-LQETCNYIRSL 59
+RR ++ S S R+ ++I++ + LQ L+P KV+ V L E NY++SL
Sbjct: 255 ARRGQATNSHSLAERVRREKISERMKYLQDLVPG-----CSKVTGKAVMLDEIINYVQSL 309
Query: 60 HREVDDLSERLSELLATTDTAQAAIIRSLLMQ 91
R+V+ LS +L+ + T D +I+ + Q
Sbjct: 310 QRQVEFLSMKLASVNPTLDLNIESILSKDIFQ 341
>gi|388453575|ref|NP_001253280.1| DNA-binding protein inhibitor ID-1 [Macaca mulatta]
gi|402882863|ref|XP_003904952.1| PREDICTED: DNA-binding protein inhibitor ID-1 [Papio anubis]
gi|380812396|gb|AFE78072.1| DNA-binding protein inhibitor ID-1 isoform a [Macaca mulatta]
gi|383418023|gb|AFH32225.1| DNA-binding protein inhibitor ID-1 isoform a [Macaca mulatta]
gi|384946824|gb|AFI37017.1| DNA-binding protein inhibitor ID-1 isoform a [Macaca mulatta]
Length = 154
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 68 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 113
>gi|355727878|gb|AES09339.1| upstream transcription factor 2, c-fos interacting [Mustela
putorius furo]
Length = 226
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 151 DKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 205
>gi|297706825|ref|XP_002830228.1| PREDICTED: DNA-binding protein inhibitor ID-1 [Pongo abelii]
Length = 155
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 69 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 114
>gi|60826106|gb|AAX36745.1| inhibitor of DNA binding 1 [synthetic construct]
Length = 156
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 69 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 114
>gi|194091|gb|AAA37879.1| helix-loop-helix protein (Id), partial [Mus musculus]
gi|148674039|gb|EDL05986.1| inhibitor of DNA binding 1, isoform CRA_a [Mus musculus]
Length = 176
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 90 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 135
>gi|355563245|gb|EHH19807.1| Inhibitor of DNA binding 1, partial [Macaca mulatta]
Length = 154
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 68 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 113
>gi|223702428|gb|ACN21645.1| putative basic helix-loop-helix protein BHLH8 [Lotus japonicus]
Length = 309
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 10/75 (13%)
Query: 3 SRRSRSRQSGS--SRITDDQINDLVSKLQQLLPELRNNRSDKVSAGK--VLQETCNYIRS 58
+RR ++ S S R+ ++I++ ++ LQQL+P DKV+ GK VL+E NY++S
Sbjct: 121 ARRGQATDSHSLAERVRREKISERMNMLQQLVP-----GCDKVT-GKALVLEEIINYVQS 174
Query: 59 LHREVDDLSERLSEL 73
L +V+ LS +L+ +
Sbjct: 175 LQHQVEFLSMKLASV 189
>gi|397490592|ref|XP_003816284.1| PREDICTED: upstream stimulatory factor 2, partial [Pan paniscus]
Length = 268
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 171 DKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 225
>gi|410983411|ref|XP_003998033.1| PREDICTED: upstream stimulatory factor 2, partial [Felis catus]
Length = 307
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 196 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 255
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 256 QRMQETFKE 264
>gi|355703426|gb|EHH29917.1| Upstream transcription factor 2, partial [Macaca mulatta]
Length = 271
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 174 DKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 228
>gi|332248783|ref|XP_003273543.1| PREDICTED: DNA-binding protein inhibitor ID-1 [Nomascus leucogenys]
Length = 155
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 69 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 114
>gi|296477787|tpg|DAA19902.1| TPA: upstream stimulatory factor 2 [Bos taurus]
Length = 338
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDK-VSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ + S S G +L + C+YIR L +
Sbjct: 235 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADSSKTGASKGGILSKACDYIRELRQTN 294
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 295 QRMQETFKE 303
>gi|348581910|ref|XP_003476720.1| PREDICTED: DNA-binding protein inhibitor ID-1-like [Cavia
porcellus]
Length = 151
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSE 68
+N S+L++L+P L NR KVS ++LQ +YIR L E++ SE
Sbjct: 65 MNGCYSRLKELVPTLPQNR--KVSKVEILQHVIDYIRDLQLELNSESE 110
>gi|157115636|ref|XP_001658274.1| basic helix-loop-helix zip transcription factor [Aedes aegypti]
gi|108876830|gb|EAT41055.1| AAEL007271-PA [Aedes aegypti]
Length = 909
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 28 LQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
L L+P+L+ N + K+S +LQ+ YI+ L E ++E++ EL
Sbjct: 702 LHSLIPQLQQNPNAKLSKAAMLQKGAEYIKQLRSERSTINEKMEEL 747
>gi|222635385|gb|EEE65517.1| hypothetical protein OsJ_20959 [Oryza sativa Japonica Group]
Length = 545
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 3 SRRSRSRQSGS--SRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKV-LQETCNYIRSL 59
+RR ++ S S R+ ++I++ + LQ L+P KV+ V L E NY++SL
Sbjct: 370 ARRGQATNSHSLAERVRREKISERMKYLQDLVPG-----CSKVTGKAVMLDEIINYVQSL 424
Query: 60 HREVDDLSERLSELLATTD 78
R+V+ LS +L+ + T D
Sbjct: 425 QRQVEFLSMKLASVNPTLD 443
>gi|326521466|dbj|BAK00309.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 440
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 5 RSRSRQSGSS-----RITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSL 59
R+RS Q+ +S R+ ++I++ + LQ L+P S + +L E NY++SL
Sbjct: 266 RARSGQATNSHSLAERVRREKISERMKFLQDLVPGC----SKVIGKAVMLDEIINYVQSL 321
Query: 60 HREVDDLSERLSELLATTDTAQAAIIRSLLMQ 91
R+V+ LS +LS + D I+ L Q
Sbjct: 322 QRQVEFLSMKLSAVNPALDFNIERILSKDLFQ 353
>gi|631793|pir||S42396 USF2 protein - mouse (fragment)
gi|402876|gb|AAA20493.1| USF2, partial [Mus musculus]
Length = 212
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 101 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTN 160
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 161 QRMQETFKE 169
>gi|444509601|gb|ELV09357.1| Upstream stimulatory factor 2, partial [Tupaia chinensis]
Length = 593
Score = 35.4 bits (80), Expect = 4.5, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 482 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 541
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 542 QRMQETFKE 550
>gi|11994804|dbj|BAB19965.1| USF2 splicing variant-1 [Rattus norvegicus]
Length = 319
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 222 DKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 276
>gi|426243701|ref|XP_004015689.1| PREDICTED: upstream stimulatory factor 2 [Ovis aries]
Length = 328
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 231 DKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 285
>gi|124360931|gb|ABN08903.1| Helix-loop-helix DNA-binding [Medicago truncatula]
Length = 484
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 7/68 (10%)
Query: 2 SSRRSRSRQSG--SSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSL 59
S++RSR+ + S R D+IN+ + LQ+L+P R+N+SDK S +L E +Y++SL
Sbjct: 253 STKRSRAAEVHNLSERRRRDRINEKMKALQELIP--RSNKSDKAS---MLDEAIDYLKSL 307
Query: 60 HREVDDLS 67
+V +S
Sbjct: 308 QLQVQMMS 315
>gi|47564070|ref|NP_001001162.1| upstream stimulatory factor 2 [Bos taurus]
gi|34420907|gb|AAQ18903.1| upstream stimulatory factor 2 [Bos taurus]
Length = 346
Score = 35.4 bits (80), Expect = 4.7, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNRSDK-VSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ + S S G +L + C+YIR L +
Sbjct: 235 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADSSKTGASKGGILSKACDYIRELRQTN 294
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 295 QRMQETFKE 303
>gi|118344372|ref|NP_001072009.1| transcription factor protein [Ciona intestinalis]
gi|70571432|dbj|BAE06746.1| transcription factor protein [Ciona intestinalis]
Length = 325
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 19 DQINDLVSKLQQLLPELRNNRSDKV-SAGKVLQETCNYIRSLHREVDDLSERL 70
D+IN+ + KL +L+P+ + + + + S G +L +TC YI L LS+R+
Sbjct: 221 DRINNWIMKLSKLVPDCQGDHTKQGQSKGGILSKTCEYILDLQSSNQRLSDRM 273
>gi|327280808|ref|XP_003225143.1| PREDICTED: upstream stimulatory factor 2-like, partial [Anolis
carolinensis]
Length = 307
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 210 DKINNWIVQLSKIIPDCNTDNTKTGASKGGILSKACDYIRELRQTNQRMQETFKE 264
>gi|351711087|gb|EHB14006.1| Upstream stimulatory factor 2, partial [Heterocephalus glaber]
Length = 232
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 135 DKINNWIVQLSKIIPDCNTDNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 189
>gi|193848525|gb|ACF22714.1| putative TA1 protein [Brachypodium distachyon]
Length = 428
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 5 RSRSRQSGSS-----RITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSL 59
R+RS Q+ +S R+ ++I++ + LQ L+P S + +L E NY++SL
Sbjct: 264 RARSGQATNSHSLAERVRREKISERMKFLQDLVPGC----SKVIGKAVMLDEIINYVQSL 319
Query: 60 HREVDDLSERLSELLATTD 78
R+V+ LS +LS + D
Sbjct: 320 QRQVEFLSMKLSTVNPALD 338
>gi|440905784|gb|ELR56118.1| Upstream stimulatory factor 2, partial [Bos grunniens mutus]
Length = 329
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 232 DKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 286
>gi|395750978|ref|XP_002829106.2| PREDICTED: upstream stimulatory factor 2 [Pongo abelii]
Length = 282
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 185 DKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 239
>gi|357124540|ref|XP_003563957.1| PREDICTED: transcription factor bHLH49-like [Brachypodium
distachyon]
Length = 441
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 5 RSRSRQSGSS-----RITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSL 59
R+RS Q+ +S R+ ++I++ + LQ L+P S + +L E NY++SL
Sbjct: 264 RARSGQATNSHSLAERVRREKISERMKFLQDLVPGC----SKVIGKAVMLDEIINYVQSL 319
Query: 60 HREVDDLSERLSELLATTD 78
R+V+ LS +LS + D
Sbjct: 320 QRQVEFLSMKLSTVNPALD 338
>gi|47420475|gb|AAT27442.1| upstream stimulatory factor 2 [Gallus gallus]
Length = 305
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+Y+R L + L E E
Sbjct: 207 DKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYVRELRQSNQRLQETFKE 261
>gi|410053699|ref|XP_003954533.1| PREDICTED: LOW QUALITY PROTEIN: upstream stimulatory factor 2,
partial [Pan troglodytes]
Length = 237
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 126 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 185
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 186 QRMQETFKE 194
>gi|387019783|gb|AFJ52009.1| Upstream stimulatory factor 1 [Crotalus adamanteus]
Length = 310
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + N +S + S G +L + C+YI+ L + LSE L L
Sbjct: 214 DKINNWIVQLSKIIPDCSMENTKSAQ-SKGGILSKACDYIQELRQNNIRLSEELQGL 269
>gi|332262024|ref|XP_003280064.1| PREDICTED: upstream stimulatory factor 2 isoform 1 [Nomascus
leucogenys]
Length = 224
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 127 DKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 181
>gi|148692029|gb|EDL23976.1| upstream transcription factor 2, isoform CRA_b [Mus musculus]
Length = 259
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 162 DKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 216
>gi|90082717|dbj|BAE90540.1| unnamed protein product [Macaca fascicularis]
Length = 224
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 127 DKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 181
>gi|1022700|gb|AAA79690.1| USF [Lytechinus variegatus]
Length = 323
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELRNNRSDKV-SAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + KL +++P+ + S + S G +L +TC+YI+ L + ++E L +
Sbjct: 228 DKINNWIVKLSKIIPDCNIDHSKQGQSKGGILSKTCDYIQELRQSNTRMAESLKD 282
>gi|18043957|gb|AAH19729.1| Usf2 protein [Mus musculus]
gi|149056264|gb|EDM07695.1| upstream transcription factor 2, isoform CRA_a [Rattus norvegicus]
gi|149056265|gb|EDM07696.1| upstream transcription factor 2, isoform CRA_a [Rattus norvegicus]
gi|149056266|gb|EDM07697.1| upstream transcription factor 2, isoform CRA_a [Rattus norvegicus]
Length = 148
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 37 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTN 96
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 97 QRMQETFKE 105
>gi|261071|gb|AAB24368.1| upstream stimulatory factor [Homo sapiens]
Length = 234
Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 123 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 182
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 183 QRMQETFKE 191
>gi|431896356|gb|ELK05771.1| Upstream stimulatory factor 2 [Pteropus alecto]
Length = 283
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 186 DKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 240
>gi|357510373|ref|XP_003625475.1| Transcription factor PIF1 [Medicago truncatula]
gi|355500490|gb|AES81693.1| Transcription factor PIF1 [Medicago truncatula]
Length = 467
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 7/64 (10%)
Query: 2 SSRRSRSRQSG--SSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSL 59
S++RSR+ + S R D+IN+ + LQ+L+P R+N+SDK S +L E +Y++SL
Sbjct: 253 STKRSRAAEVHNLSERRRRDRINEKMKALQELIP--RSNKSDKAS---MLDEAIDYLKSL 307
Query: 60 HREV 63
+V
Sbjct: 308 QLQV 311
>gi|218189745|gb|EEC72172.1| hypothetical protein OsI_05220 [Oryza sativa Indica Group]
Length = 181
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 20 QINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATTDT 79
Q+N+L S L+ LLP+ + + K+S + YI L ++V++L + EL AT+ T
Sbjct: 84 QLNELYSSLRALLPDA--DHTKKLSIPTTVSRVLKYIPELQKQVENLERKKKELTATSTT 141
>gi|11994806|dbj|BAB19966.1| USF2 splicing variant-2 [Rattus norvegicus]
Length = 279
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 182 DKINNWIVQLSKIIPDCHADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 236
>gi|380798363|gb|AFE71057.1| upstream stimulatory factor 2 isoform 2, partial [Macaca mulatta]
Length = 263
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 166 DKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 220
>gi|387915386|gb|AFK11302.1| DNA-binding protein inhibitor [Callorhinchus milii]
gi|392884360|gb|AFM91012.1| DNA-binding protein inhibitor [Callorhinchus milii]
Length = 141
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATTDT 79
+N SKL++L+P L N+ KVS ++LQ +YI L E+D + + A T T
Sbjct: 51 MNSCYSKLKELVPTLPQNK--KVSKVEILQHVIDYIWDLQVELDTHPGMMRQQAAQTGT 107
>gi|226491584|ref|NP_001147257.1| protein SPATULA [Zea mays]
gi|195609152|gb|ACG26406.1| protein SPATULA [Zea mays]
Length = 185
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 7/60 (11%)
Query: 2 SSRRSRSRQ--SGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSL 59
+RRSRS + + S R D+IN+ + LQ+LLP N++DKVS +L E +Y++SL
Sbjct: 13 PARRSRSAEFHNFSERRRRDKINEKLKALQELLPNC--NKTDKVS---MLDEAIDYLKSL 67
>gi|225446765|ref|XP_002278399.1| PREDICTED: transcription factor PIF5-like [Vitis vinifera]
Length = 531
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 7/59 (11%)
Query: 2 SSRRSRSRQ--SGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRS 58
S+RRSR+ + + S R D+IN+ + LQ+L+P +N+SDK S +L E Y++S
Sbjct: 333 STRRSRAAEVHNLSERRRRDRINEKMKALQELIPH--SNKSDKAS---MLDEAIEYLKS 386
>gi|226499484|ref|NP_001146943.1| protein SPATULA [Zea mays]
gi|195605542|gb|ACG24601.1| protein SPATULA [Zea mays]
gi|414585417|tpg|DAA35988.1| TPA: putative HLH DNA-binding domain superfamily protein isoform
1 [Zea mays]
gi|414585418|tpg|DAA35989.1| TPA: putative HLH DNA-binding domain superfamily protein isoform
2 [Zea mays]
gi|414585419|tpg|DAA35990.1| TPA: putative HLH DNA-binding domain superfamily protein isoform
3 [Zea mays]
Length = 185
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 7/60 (11%)
Query: 2 SSRRSRSRQ--SGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSL 59
+RRSRS + + S R D+IN+ + LQ+LLP N++DKVS +L E +Y++SL
Sbjct: 13 PTRRSRSAEFHNFSERRRRDKINEKLKALQELLPNC--NKTDKVS---MLDEAIDYLKSL 67
>gi|290767992|gb|ADD60699.1| putative TA1 protein [Oryza officinalis]
Length = 435
Score = 34.7 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 3 SRRSRSRQSGS--SRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKV-LQETCNYIRSL 59
+RR ++ S S R+ ++I++ + LQ L+P KV+ V L E NY++SL
Sbjct: 260 ARRGQATNSHSLAERVRREKISERMKYLQDLVPG-----CSKVTGKAVMLDEIINYVQSL 314
Query: 60 HREVDDLSERLSELLATTD 78
R+V+ LS +L+ + T D
Sbjct: 315 QRQVEFLSMKLASVNPTLD 333
>gi|357113061|ref|XP_003558323.1| PREDICTED: transcription factor PIF5-like [Brachypodium distachyon]
Length = 418
Score = 34.7 bits (78), Expect = 6.9, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 2 SSRRSRSRQ--SGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSL 59
S RRSR+ + + S R D+IN+ + LQ+L+P N++DK S +L E Y++SL
Sbjct: 230 SKRRSRAAEVHNQSERRRRDRINEKMRSLQELIPHC--NKADKAS---ILDEAIEYLKSL 284
Query: 60 HREV 63
++
Sbjct: 285 QMQL 288
>gi|402217002|gb|EJT97084.1| hypothetical protein DACRYDRAFT_112046 [Dacryopinax sp. DJM-731
SS1]
Length = 743
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 32 LPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATTD 78
+P + N D VS + +E CN I + REVD L RL+ LL T +
Sbjct: 336 VPPMPMNEEDSVS---LFREVCNRIGTARREVDGLDGRLNALLGTVN 379
>gi|148227068|ref|NP_001088134.1| upstream transcription factor 2, c-fos interacting [Xenopus laevis]
gi|52789331|gb|AAH83010.1| LOC494839 protein [Xenopus laevis]
Length = 310
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPELRNNRSDKVSA--GKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ N S K A G +L + C+YIR L + + E E+
Sbjct: 213 DKINNWIVQLSKIIPDC-NTESAKTGASKGGILSKACDYIRELRQTNQRMQETYKEV 268
>gi|46877105|ref|NP_997174.1| upstream stimulatory factor 2 isoform 2 [Homo sapiens]
gi|1279509|emb|CAA62340.1| USF2a, USF2b protein [Homo sapiens]
gi|410218102|gb|JAA06270.1| upstream transcription factor 2, c-fos interacting [Pan
troglodytes]
gi|410249532|gb|JAA12733.1| upstream transcription factor 2, c-fos interacting [Pan
troglodytes]
gi|410296830|gb|JAA27015.1| upstream transcription factor 2, c-fos interacting [Pan
troglodytes]
Length = 279
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 182 DKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 236
>gi|302143504|emb|CBI22065.3| unnamed protein product [Vitis vinifera]
Length = 544
Score = 34.7 bits (78), Expect = 7.3, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 7/59 (11%)
Query: 2 SSRRSRSRQ--SGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRS 58
S+RRSR+ + + S R D+IN+ + LQ+L+P +N+SDK S +L E Y++S
Sbjct: 333 STRRSRAAEVHNLSERRRRDRINEKMKALQELIPH--SNKSDKAS---MLDEAIEYLKS 386
>gi|805172|gb|AAA66098.1| USF1 [Lytechinus variegatus]
Length = 299
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELRNNRSDKV-SAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + KL +++P+ + S + S G +L +TC+YI+ L + ++E L +
Sbjct: 204 DKINNWIVKLSKIIPDCNIDHSKQGQSKGGILSKTCDYIQELRQSNTRMAESLKD 258
>gi|311257382|ref|XP_003127090.1| PREDICTED: upstream stimulatory factor 2 isoform 2 [Sus scrofa]
Length = 279
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 19 DQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72
D+IN+ + +L +++P+ +N S G +L + C+YIR L + + E E
Sbjct: 182 DKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKE 236
>gi|340711307|ref|XP_003394219.1| PREDICTED: Williams-Beuren syndrome chromosomal region 14
protein-like [Bombus terrestris]
Length = 1011
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
I + L L+P+L N + K+S +LQ+ +YIR L E + L E + L
Sbjct: 823 IKNGFDMLHNLIPQLNQNPNTKMSKAAMLQKGADYIRQLRAERNQLKEEMDTL 875
>gi|29436750|gb|AAH49784.1| Usf1 protein [Mus musculus]
Length = 296
Score = 34.7 bits (78), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|15528806|dbj|BAB64701.1| bHLH transcription factor-like [Oryza sativa Japonica Group]
gi|125529142|gb|EAY77256.1| hypothetical protein OsI_05230 [Oryza sativa Indica Group]
gi|125573344|gb|EAZ14859.1| hypothetical protein OsJ_04787 [Oryza sativa Japonica Group]
Length = 248
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 20 QINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATTDT 79
Q+N+L S L+ LLP+ + + K+S + YI L ++V++L + EL T+ T
Sbjct: 83 QLNELYSSLRALLPDA--DHTKKLSIPTTVSRVLKYIPELQKQVENLERKKKELTTTSTT 140
Query: 80 -AQAAIIRSLLM 90
+ ++ S LM
Sbjct: 141 NCKPGVLGSQLM 152
>gi|148707136|gb|EDL39083.1| upstream transcription factor 1, isoform CRA_b [Mus musculus]
Length = 317
Score = 34.3 bits (77), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 234 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 289
>gi|47564068|ref|NP_001001161.1| upstream stimulatory factor 1 [Bos taurus]
gi|75063319|sp|Q6XBT4.1|USF1_BOVIN RecName: Full=Upstream stimulatory factor 1
gi|37933780|gb|AAP43041.1| upstream stimulatory factor 1 [Bos taurus]
gi|92098342|gb|AAI14685.1| Upstream transcription factor 1 [Bos taurus]
gi|296489843|tpg|DAA31956.1| TPA: upstream stimulatory factor 1 [Bos taurus]
Length = 310
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|350411942|ref|XP_003489496.1| PREDICTED: Williams-Beuren syndrome chromosomal region 14
protein-like [Bombus impatiens]
Length = 1001
Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
I + L L+P+L N + K+S +LQ+ +YIR L E + L E + L
Sbjct: 826 IKNGFDMLHSLIPQLNQNPNTKMSKAAMLQKGADYIRQLRAERNQLKEEMDTL 878
>gi|356536868|ref|XP_003536955.1| PREDICTED: transcription factor PIF1-like [Glycine max]
Length = 491
Score = 34.3 bits (77), Expect = 8.9, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 2 SSRRSRSRQ--SGSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSL 59
S++RS + + + S R D+IN+ + LQ+L+P R N+SDK S +L E Y++SL
Sbjct: 271 STKRSHAAEVHNLSERRRRDRINEKMKALQELIP--RCNKSDKAS---MLDEAIEYLKSL 325
Query: 60 HREVDDLS 67
+V +S
Sbjct: 326 QLQVQMMS 333
>gi|440893871|gb|ELR46487.1| Upstream stimulatory factor 1, partial [Bos grunniens mutus]
Length = 307
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 210 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 265
>gi|60810083|gb|AAX36097.1| upstream transcription factor 1 [synthetic construct]
Length = 311
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|130503107|ref|NP_001076104.1| upstream stimulatory factor 1 [Oryctolagus cuniculus]
gi|3915202|sp|O02818.1|USF1_RABIT RecName: Full=Upstream stimulatory factor 1; AltName: Full=Major
late transcription factor 1
gi|2197097|gb|AAC48764.1| upstream stimulatory factor 1a [Oryctolagus cuniculus]
Length = 310
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|38147785|gb|AAN63092.1| upstream stimulatory factor 2c [Homo sapiens]
Length = 215
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R++ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 104 RRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 163
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 164 QRMQETFKE 172
>gi|426216971|ref|XP_004023428.1| PREDICTED: LOW QUALITY PROTEIN: upstream stimulatory factor 1-like
[Ovis aries]
Length = 317
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 220 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 275
>gi|410986669|ref|XP_003999632.1| PREDICTED: upstream stimulatory factor 1 isoform 1 [Felis catus]
Length = 310
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|281352160|gb|EFB27744.1| hypothetical protein PANDA_018845 [Ailuropoda melanoleuca]
Length = 307
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 210 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 265
>gi|74006163|ref|XP_545763.2| PREDICTED: upstream stimulatory factor 1 isoform 1 [Canis lupus
familiaris]
Length = 310
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|344286988|ref|XP_003415238.1| PREDICTED: upstream stimulatory factor 1 [Loxodonta africana]
Length = 310
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|301786767|ref|XP_002928795.1| PREDICTED: upstream stimulatory factor 1-like [Ailuropoda
melanoleuca]
Length = 310
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|410033989|ref|XP_003949666.1| PREDICTED: LOW QUALITY PROTEIN: upstream stimulatory factor 1 [Pan
troglodytes]
Length = 310
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|332219266|ref|XP_003258777.1| PREDICTED: upstream stimulatory factor 1 isoform 1 [Nomascus
leucogenys]
gi|441635087|ref|XP_004089891.1| PREDICTED: upstream stimulatory factor 1 isoform 2 [Nomascus
leucogenys]
Length = 310
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|298228980|ref|NP_001177174.1| upstream stimulatory factor 1 [Sus scrofa]
Length = 310
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|6005934|ref|NP_009053.1| upstream stimulatory factor 1 isoform 1 [Homo sapiens]
gi|444909174|ref|NP_001263302.1| upstream stimulatory factor 1 isoform 1 [Homo sapiens]
gi|395825209|ref|XP_003785833.1| PREDICTED: upstream stimulatory factor 1 [Otolemur garnettii]
gi|397481341|ref|XP_003811906.1| PREDICTED: upstream stimulatory factor 1 isoform 1 [Pan paniscus]
gi|397481343|ref|XP_003811907.1| PREDICTED: upstream stimulatory factor 1 isoform 2 [Pan paniscus]
gi|402856849|ref|XP_003892992.1| PREDICTED: upstream stimulatory factor 1 isoform 2 [Papio anubis]
gi|426332381|ref|XP_004027784.1| PREDICTED: upstream stimulatory factor 1 isoform 1 [Gorilla gorilla
gorilla]
gi|426332383|ref|XP_004027785.1| PREDICTED: upstream stimulatory factor 1 isoform 2 [Gorilla gorilla
gorilla]
gi|137170|sp|P22415.1|USF1_HUMAN RecName: Full=Upstream stimulatory factor 1; AltName: Full=Class B
basic helix-loop-helix protein 11; Short=bHLHb11;
AltName: Full=Major late transcription factor 1
gi|37615|emb|CAA39201.1| upstream stimulatory factor [Homo sapiens]
gi|4586912|dbj|BAA76541.1| USF1 [Homo sapiens]
gi|23273795|gb|AAH35505.1| Upstream transcription factor 1 [Homo sapiens]
gi|46361512|gb|AAS89301.1| upstream transcription factor 1 [Homo sapiens]
gi|61364350|gb|AAX42529.1| upstream transcription factor 1 [synthetic construct]
gi|117644278|emb|CAL37633.1| hypothetical protein [synthetic construct]
gi|117646488|emb|CAL38711.1| hypothetical protein [synthetic construct]
gi|119573060|gb|EAW52675.1| upstream transcription factor 1, isoform CRA_a [Homo sapiens]
gi|189054732|dbj|BAG37391.1| unnamed protein product [Homo sapiens]
gi|208968027|dbj|BAG73852.1| upstream transcription factor 1 [synthetic construct]
gi|380816214|gb|AFE79981.1| upstream stimulatory factor 1 isoform 1 [Macaca mulatta]
gi|383421309|gb|AFH33868.1| upstream stimulatory factor 1 isoform 1 [Macaca mulatta]
gi|384949244|gb|AFI38227.1| upstream stimulatory factor 1 isoform 1 [Macaca mulatta]
gi|410209684|gb|JAA02061.1| upstream transcription factor 1 [Pan troglodytes]
gi|410248092|gb|JAA12013.1| upstream transcription factor 1 [Pan troglodytes]
gi|410304040|gb|JAA30620.1| upstream transcription factor 1 [Pan troglodytes]
gi|410333849|gb|JAA35871.1| upstream transcription factor 1 [Pan troglodytes]
Length = 310
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|403294046|ref|XP_003938016.1| PREDICTED: upstream stimulatory factor 1 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403294048|ref|XP_003938017.1| PREDICTED: upstream stimulatory factor 1 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 310
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|351710733|gb|EHB13652.1| Upstream stimulatory factor 1, partial [Heterocephalus glaber]
Length = 307
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 210 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 265
>gi|27368090|gb|AAN87166.1| USF2 [Oryctolagus cuniculus]
Length = 277
Score = 34.3 bits (77), Expect = 9.6, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 5 RSRSRQSGSSRITDDQINDLVSKLQQLLPELR-NNRSDKVSAGKVLQETCNYIRSLHREV 63
R R+ + R D+IN+ + +L +++P+ +N S G +L + C+YIR L +
Sbjct: 166 RRRAPDNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTN 225
Query: 64 DDLSERLSE 72
+ E E
Sbjct: 226 QRMQETFKE 234
>gi|348561650|ref|XP_003466625.1| PREDICTED: upstream stimulatory factor 1-like [Cavia porcellus]
Length = 310
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
>gi|328948435|ref|YP_004365772.1| methyl-accepting chemotaxis sensory transducer with Cache sensor
[Treponema succinifaciens DSM 2489]
gi|328448759|gb|AEB14475.1| methyl-accepting chemotaxis sensory transducer with Cache sensor
[Treponema succinifaciens DSM 2489]
Length = 702
Score = 34.3 bits (77), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATTDTA 80
N V KLQ+++ +++N++++ SAG+VL+E+ + S ++++LA D+
Sbjct: 357 FNKFVGKLQEIISDVKNSKNELSSAGEVLEEST----------QNTSSAITQILANIDSV 406
Query: 81 QAAII 85
+ I+
Sbjct: 407 RNQIV 411
>gi|290767978|gb|ADD60686.1| putative TA1 protein [Oryza australiensis]
Length = 436
Score = 34.3 bits (77), Expect = 9.8, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 3 SRRSRSRQSGS--SRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKV-LQETCNYIRSL 59
+RR ++ S S R+ ++I++ + LQ L+P KV+ V L E NY++SL
Sbjct: 261 ARRGQATNSHSLAERVRREKISERMKYLQNLVPG-----CTKVTGKAVMLDEIINYVQSL 315
Query: 60 HREVDDLSERLSELLATTD 78
R+V+ LS +L+ + T D
Sbjct: 316 QRQVEFLSMKLASVNPTLD 334
>gi|354489503|ref|XP_003506901.1| PREDICTED: upstream stimulatory factor 1-like [Cricetulus griseus]
Length = 310
Score = 34.3 bits (77), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 19 DQINDLVSKLQQLLPE--LRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73
D+IN+ + +L +++P+ + + +S + S G +L + C+YI+ L + LSE L L
Sbjct: 213 DKINNWIVQLSKIIPDCSMESTKSGQ-SKGGILSKACDYIQELRQSNHRLSEELQGL 268
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.125 0.318
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,057,676,099
Number of Sequences: 23463169
Number of extensions: 32266686
Number of successful extensions: 154898
Number of sequences better than 100.0: 526
Number of HSP's better than 100.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 383
Number of HSP's that attempted gapping in prelim test: 154578
Number of HSP's gapped (non-prelim): 583
length of query: 91
length of database: 8,064,228,071
effective HSP length: 61
effective length of query: 30
effective length of database: 6,632,974,762
effective search space: 198989242860
effective search space used: 198989242860
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 69 (31.2 bits)