BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048534
         (91 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AYA|A Chain A, Crystal Structure Of Id2 Hlh Homodimer At 2.1a
          Resolution
 pdb|4AYA|B Chain B, Crystal Structure Of Id2 Hlh Homodimer At 2.1a
          Resolution
          Length = 97

 Score = 32.0 bits (71), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVD 64
          +ND  SKL++L+P +  N+  KVS  ++LQ   +YI  L   +D
Sbjct: 40 MNDCYSKLKELVPSIPQNK--KVSKMEILQHVIDYILDLQIALD 81


>pdb|3QAT|A Chain A, Crystal Structure Of
          Acyl-Carrier-Protein-S-Malonyltransferase From
          Bartonella Henselae
 pdb|3QAT|B Chain B, Crystal Structure Of
          Acyl-Carrier-Protein-S-Malonyltransferase From
          Bartonella Henselae
          Length = 318

 Score = 26.9 bits (58), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 9/55 (16%)

Query: 40 SDKVSAGKVLQETCNYIRSLHREVDD-LSERLSEL--------LATTDTAQAAII 85
          S  +  GKVL E     R +  EVDD LSE+LS++        L  T  AQ A++
Sbjct: 16 SQLIGMGKVLTEQFVAARMVFEEVDDALSEKLSDIIFEGPADVLTLTANAQPALM 70


>pdb|2QEN|A Chain A, The Walker-type Atpase Paby2304 Of Pyrococcus Abyssi
          Length = 350

 Score = 26.6 bits (57), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 56  IRSLHREVDDLSERLSELLATTDTAQ 81
           +R + RE++DL E L E +   D AQ
Sbjct: 113 LREVFRELNDLGEELGEFIVAFDEAQ 138


>pdb|2NRJ|A Chain A, Crystal Structure Of Hemolysin Binding Component From
           Bacillus Cereus
          Length = 346

 Score = 26.2 bits (56), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 23  DLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDD 65
           D + KL+ LL ELR     KV+  +V+    + I   H+ +DD
Sbjct: 226 DNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEXHKALDD 268


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.335 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,717,987
Number of Sequences: 62578
Number of extensions: 48421
Number of successful extensions: 237
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 5
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)