Query 048534
Match_columns 91
No_of_seqs 44 out of 46
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 18:04:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 98.7 7.6E-08 2.6E-12 61.9 6.9 54 19-76 19-72 (82)
2 1hlo_A Protein (transcription 98.6 1.1E-07 3.7E-12 60.4 7.0 52 19-73 25-76 (80)
3 1nkp_B MAX protein, MYC proto- 98.6 2.9E-07 9.9E-12 58.4 7.3 53 19-74 15-67 (83)
4 1a0a_A BHLH, protein (phosphat 98.4 2E-07 7E-12 57.9 4.0 46 19-64 15-62 (63)
5 1an4_A Protein (upstream stimu 98.2 2.1E-07 7.1E-12 56.8 0.6 46 19-64 18-64 (65)
6 1nlw_A MAD protein, MAX dimeri 98.1 1E-05 3.5E-10 52.2 6.6 53 19-73 14-66 (80)
7 1nkp_A C-MYC, MYC proto-oncoge 98.1 1.9E-05 6.5E-10 51.5 7.3 53 19-73 19-71 (88)
8 4h10_B Circadian locomoter out 98.0 1.3E-05 4.5E-10 51.5 5.4 44 19-66 21-64 (71)
9 3u5v_A Protein MAX, transcript 98.0 1.2E-05 4E-10 51.8 5.2 46 19-66 18-64 (76)
10 4ati_A MITF, microphthalmia-as 98.0 1.4E-05 4.9E-10 54.5 5.8 50 19-69 40-89 (118)
11 4ath_A MITF, microphthalmia-as 97.4 0.00042 1.4E-08 46.2 6.3 53 19-72 5-57 (83)
12 4h10_A ARYL hydrocarbon recept 97.2 0.00056 1.9E-08 43.7 4.9 42 19-61 22-63 (73)
13 2ql2_B Neurod1, neurogenic dif 97.1 0.00079 2.7E-08 41.4 4.6 44 19-64 15-58 (60)
14 1mdy_A Protein (MYOD BHLH doma 96.7 0.0016 5.6E-08 41.0 4.0 43 19-64 25-67 (68)
15 4f3l_A Mclock, circadian locom 96.5 0.0035 1.2E-07 46.6 5.0 40 18-61 24-63 (361)
16 2lfh_A DNA-binding protein inh 96.2 0.0066 2.3E-07 39.2 4.6 41 19-61 27-67 (68)
17 4f3l_B BMAL1B; BHLH, PAS, circ 95.8 0.013 4.6E-07 44.2 5.2 42 19-61 26-67 (387)
18 4aya_A DNA-binding protein inh 95.1 0.046 1.6E-06 37.1 5.4 42 21-64 40-81 (97)
19 2di0_A Activating signal coint 81.7 1.1 3.9E-05 28.7 2.9 26 11-36 3-28 (71)
20 3coq_A Regulatory protein GAL4 80.9 2.4 8.2E-05 25.3 4.0 37 54-90 45-87 (89)
21 1t2k_D Cyclic-AMP-dependent tr 79.2 6.9 0.00024 23.1 5.6 50 41-90 9-60 (61)
22 3ayh_A DNA-directed RNA polyme 78.9 0.51 1.8E-05 32.2 0.5 20 14-33 117-136 (136)
23 2wt7_A Proto-oncogene protein 75.9 9 0.00031 22.9 5.5 51 40-90 9-61 (63)
24 3viq_B Mating-type switching p 72.1 15 0.00051 24.2 6.3 31 45-78 36-68 (85)
25 1xaw_A Occludin; coiled-coil, 68.4 3.5 0.00012 29.4 2.7 32 47-78 52-83 (140)
26 2r17_C Vacuolar protein sortin 68.3 2.9 9.9E-05 32.4 2.5 46 12-58 252-297 (298)
27 1jnm_A Proto-oncogene C-JUN; B 66.8 3.8 0.00013 24.4 2.3 49 41-89 9-59 (62)
28 2er8_A Regulatory protein Leu3 66.7 3.2 0.00011 24.1 2.0 21 54-74 49-69 (72)
29 1ci6_A Transcription factor AT 66.3 18 0.00063 21.7 5.4 52 39-90 8-61 (63)
30 1zme_C Proline utilization tra 65.5 7.4 0.00025 22.2 3.3 23 54-76 44-66 (70)
31 3dp5_A OMCF, cytochrome C fami 65.4 5 0.00017 24.4 2.7 19 15-33 81-99 (99)
32 3cu4_A Cytochrome C family pro 62.3 6.2 0.00021 22.5 2.6 19 15-33 67-85 (85)
33 2zxy_A Cytochrome C552, cytoch 61.0 4.9 0.00017 22.6 1.9 18 14-31 69-86 (87)
34 3twe_A Alpha4H; unknown functi 61.0 6.8 0.00023 21.3 2.4 17 58-74 5-21 (27)
35 3mtu_E Head morphogenesis prot 60.0 27 0.00091 22.8 5.6 54 12-72 2-55 (77)
36 1gks_A Cytochrome C551; haloph 59.5 6.4 0.00022 22.6 2.3 18 14-31 60-77 (78)
37 3eab_G CHMP1B; spastin, MIT, E 59.3 3.4 0.00012 24.4 1.1 14 60-73 35-48 (50)
38 3ph2_B Cytochrome C6; photosyn 57.4 9.9 0.00034 21.3 2.8 18 14-31 64-81 (86)
39 1gdv_A Cytochrome C6; RED ALGA 57.2 10 0.00034 21.2 2.8 18 14-31 63-80 (85)
40 3dr0_A Cytochrome C6; photosyn 56.2 9.3 0.00032 21.5 2.6 18 14-31 70-87 (93)
41 3dmi_A Cytochrome C6; electron 55.3 9.7 0.00033 21.5 2.6 18 14-31 65-82 (88)
42 3azd_A Short alpha-tropomyosin 53.8 7.8 0.00027 21.7 1.9 23 54-76 11-33 (37)
43 1cno_A Cytochrome C552; electr 53.7 11 0.00038 21.7 2.7 20 14-33 65-84 (87)
44 1c6r_A Cytochrome C6; electron 53.7 12 0.00041 21.2 2.8 20 14-33 66-85 (89)
45 1ayg_A Cytochrome C-552; elect 53.3 9.9 0.00034 21.6 2.4 17 15-31 63-79 (80)
46 1a56_A C-551, ferricytochrome 53.2 9.8 0.00034 21.5 2.4 18 14-31 63-80 (81)
47 1c53_A Cytochrome C553; electr 53.1 8.9 0.00031 21.8 2.2 18 14-31 62-79 (79)
48 1cyi_A Cytochrome C6, cytochro 53.1 12 0.00041 21.4 2.8 20 14-33 65-84 (90)
49 1f1f_A Cytochrome C6; heme, pr 53.0 12 0.00041 21.2 2.7 18 14-31 67-84 (89)
50 2d0s_A Cytochrome C, cytochrom 52.1 7.8 0.00027 21.9 1.8 18 14-31 61-78 (79)
51 2exv_A Cytochrome C-551; alpha 51.5 9.9 0.00034 21.3 2.2 17 15-31 65-81 (82)
52 2xze_Q Charged multivesicular 51.4 10 0.00035 22.1 2.2 13 19-31 26-38 (40)
53 1cch_A Cytochrome C551; electr 51.0 12 0.0004 20.9 2.4 17 15-31 65-81 (82)
54 1kmi_Z CHEZ, chemotaxis protei 50.6 69 0.0024 23.2 7.3 38 42-79 104-141 (214)
55 1c75_A Cytochrome C-553; heme, 50.2 12 0.0004 20.8 2.3 18 14-31 53-70 (71)
56 2hdd_A Protein (engrailed home 49.5 8.3 0.00028 21.9 1.6 23 1-29 1-23 (61)
57 2zon_G Cytochrome C551; nitrit 49.4 13 0.00046 21.2 2.6 17 15-31 69-85 (87)
58 1ls9_A Cytochrome C6; omega lo 48.9 15 0.00051 21.1 2.7 20 14-33 68-87 (91)
59 2zzs_A Cytochrome C554; C-type 47.7 14 0.00048 21.7 2.5 18 14-31 85-102 (103)
60 2l4d_A SCO1/SENC family protei 47.5 14 0.00047 21.7 2.4 21 15-35 80-100 (110)
61 1w2l_A Cytochrome oxidase subu 46.4 12 0.00042 21.5 2.1 18 14-31 81-98 (99)
62 3rrk_A V-type ATPase 116 kDa s 46.3 46 0.0016 24.3 5.6 61 19-79 63-124 (357)
63 1wve_C 4-cresol dehydrogenase 46.2 17 0.00059 20.8 2.7 19 14-32 56-74 (80)
64 2z5i_A TM, general control pro 45.9 25 0.00086 20.7 3.4 22 50-71 8-29 (52)
65 4fhz_A Phospholipase/carboxyle 45.1 13 0.00045 26.6 2.5 38 14-53 248-285 (285)
66 2ce0_A Cytochrome C6; chloropl 44.7 18 0.00063 21.0 2.7 20 14-33 77-96 (105)
67 2c1d_B SOXX; sulfur oxidation, 43.6 16 0.00056 23.0 2.5 17 15-31 119-135 (137)
68 2oqq_A Transcription factor HY 42.8 42 0.0015 19.8 4.0 37 54-90 3-41 (42)
69 2wvq_A Small S protein; prion- 40.8 24 0.00082 25.5 3.3 18 19-36 165-182 (225)
70 3ay5_A Cyclin-D1-binding prote 39.6 67 0.0023 24.8 5.8 68 1-68 1-72 (360)
71 1kx2_A Mono-heme C-type cytoch 39.1 16 0.00056 21.0 1.8 17 14-30 63-79 (81)
72 3fwb_A Cell division control p 39.1 34 0.0012 20.3 3.4 31 1-31 1-32 (161)
73 1c52_A Cytochrome-C552; electr 38.5 42 0.0014 21.0 3.8 20 15-34 74-93 (131)
74 2ejs_A Autocrine motility fact 38.5 21 0.00072 21.9 2.3 24 13-36 5-28 (58)
75 1m70_A Cytochrome C4; electron 38.5 20 0.00067 23.2 2.3 18 14-31 172-189 (190)
76 1f1c_A Cytochrome C549; dimeri 38.0 26 0.00089 21.2 2.7 19 15-33 104-122 (129)
77 4h62_V Mediator of RNA polymer 38.0 15 0.00051 20.5 1.4 17 11-27 4-20 (31)
78 2lhi_A Calmodulin, serine/thre 37.8 8.2 0.00028 25.2 0.4 32 12-47 1-32 (176)
79 3cp5_A Cytochrome C; electron 37.6 25 0.00084 21.3 2.6 19 14-32 103-121 (124)
80 1ccr_A Cytochrome C; electron 37.1 24 0.00083 21.2 2.4 17 15-31 94-110 (112)
81 1wdc_A Scallop myosin; calcium 37.1 37 0.0013 19.6 3.2 38 18-55 2-44 (64)
82 1h32_B Cytochrome C, SOXX; ele 37.0 19 0.00064 22.6 2.0 17 15-31 120-136 (138)
83 1h1o_A Cytochrome C-552; elect 36.6 24 0.00083 22.6 2.5 18 14-31 166-183 (183)
84 2ekf_A Ancient ubiquitous prot 36.6 17 0.00058 22.6 1.7 24 13-36 5-28 (61)
85 3hho_A CO-chaperone protein HS 36.0 1E+02 0.0036 21.1 6.5 21 50-70 152-172 (174)
86 2jr2_A UPF0352 protein CPS_261 35.8 27 0.00091 22.9 2.6 22 13-34 4-25 (76)
87 3zzp_A TS9, ribosomal protein 35.1 31 0.0011 21.5 2.8 22 14-35 54-75 (77)
88 2juw_A UPF0352 protein SO_2176 34.1 30 0.001 22.8 2.7 22 13-34 4-25 (80)
89 2jrx_A UPF0352 protein YEJL; h 33.7 30 0.001 23.0 2.6 22 13-34 4-25 (83)
90 2jpq_A UPF0352 protein VP2129; 33.2 31 0.001 23.0 2.6 22 13-34 4-25 (83)
91 2juz_A UPF0352 protein HI0840; 32.9 32 0.0011 22.7 2.6 22 13-34 4-25 (80)
92 1v66_A Protein inhibitor of ac 32.2 20 0.00068 22.9 1.5 30 25-54 16-50 (65)
93 1cc5_A Cytochrome C5; electron 31.9 29 0.001 20.3 2.2 15 15-29 67-81 (83)
94 4g3o_A E3 ubiquitin-protein li 31.9 31 0.0011 21.3 2.3 19 18-36 14-32 (58)
95 1eij_A Hypothetical protein MT 30.5 34 0.0012 22.0 2.5 17 13-29 53-69 (80)
96 2dnx_A Syntaxin-12; snare, HAB 30.4 1.2E+02 0.004 20.0 6.3 54 20-74 25-78 (130)
97 1qn2_A Cytochrome CH; electron 30.0 35 0.0012 20.1 2.3 16 16-31 84-99 (100)
98 2w9k_A Cytochrome C, cytochrom 29.5 32 0.0011 20.8 2.1 17 15-31 96-112 (114)
99 3m91_A Proteasome-associated A 29.3 54 0.0018 19.5 3.0 43 18-67 8-50 (51)
100 3o0r_C Nitric oxide reductase 28.9 38 0.0013 21.2 2.4 17 16-32 117-133 (146)
101 1pyi_A Protein (pyrimidine pat 28.3 58 0.002 19.4 3.1 24 54-77 48-71 (96)
102 1i54_A Cytochrome C; zinc-porp 27.5 42 0.0014 19.5 2.3 17 15-31 84-101 (103)
103 2kjw_A TS9, 30S ribosomal prot 27.4 46 0.0016 21.6 2.7 23 14-36 54-76 (96)
104 2fh0_A Hypothetical 16.0 kDa p 27.4 42 0.0015 21.7 2.5 17 13-29 51-67 (81)
105 1mz4_A Cytochrome C550; PSII a 27.4 47 0.0016 20.7 2.7 19 15-33 106-124 (137)
106 3b09_A Peptidyl-prolyl CIS-tra 26.9 49 0.0017 21.0 2.7 18 13-30 69-86 (88)
107 1ycc_A Cytochrome C; electron 26.8 46 0.0016 19.6 2.4 15 17-31 92-106 (108)
108 2gc4_D Cytochrome C-L; electro 26.4 49 0.0017 21.1 2.7 18 14-31 106-123 (147)
109 1pd7_B MAD1; PAH2, SIN3, eukar 26.3 67 0.0023 17.3 2.7 18 47-64 6-23 (26)
110 3n0l_A Serine hydroxymethyltra 25.3 60 0.0021 22.6 3.1 19 16-34 370-388 (417)
111 3hd7_A Vesicle-associated memb 25.2 87 0.003 19.7 3.7 13 67-79 32-44 (91)
112 3s4r_A Vimentin; alpha-helix, 25.2 94 0.0032 19.8 3.8 26 54-79 56-81 (93)
113 1ru0_A DCOH-like protein dcohm 24.7 52 0.0018 21.3 2.5 19 11-29 5-23 (105)
114 1dip_A Delta-sleep-inducing pe 24.7 34 0.0011 22.6 1.6 29 60-88 14-44 (78)
115 1co6_A Protein (cytochrome C2) 24.6 49 0.0017 19.6 2.3 17 17-33 86-102 (107)
116 2dwf_A Pulmonary surfactant-as 24.5 33 0.0011 19.5 1.4 13 23-35 6-18 (34)
117 1bw5_A ISL-1HD, insulin gene e 24.5 86 0.003 17.7 3.3 17 14-30 8-24 (66)
118 1dh3_A Transcription factor CR 24.2 85 0.0029 18.3 3.2 24 54-77 22-45 (55)
119 1ez3_A Syntaxin-1A; three heli 24.1 42 0.0015 21.0 2.0 16 20-35 16-31 (127)
120 1eg5_A Aminotransferase; PLP-d 24.0 46 0.0016 22.7 2.3 22 15-36 356-377 (384)
121 1hwt_C Protein (heme activator 23.9 27 0.00091 20.3 0.9 16 55-70 59-74 (81)
122 3rmi_A Chorismate mutase prote 23.8 1E+02 0.0035 20.1 3.9 25 51-75 9-33 (114)
123 3he4_B Synzip5; heterodimeric 23.4 1.1E+02 0.0037 18.2 3.6 23 49-71 5-30 (46)
124 1gd2_E Transcription factor PA 23.2 1E+02 0.0036 19.1 3.7 26 50-75 25-50 (70)
125 1xkm_B Distinctin chain B; por 23.0 83 0.0028 16.8 2.7 17 49-65 6-22 (26)
126 3dby_A Uncharacterized protein 23.0 40 0.0014 25.8 2.0 18 44-61 232-249 (269)
127 2cru_A Programmed cell death p 22.9 53 0.0018 22.5 2.4 17 13-29 83-99 (118)
128 2dgc_A Protein (GCN4); basic d 22.7 1.3E+02 0.0044 18.0 3.9 37 41-77 17-53 (63)
129 3hxa_A Pterin-4-alpha-carbinol 22.3 42 0.0014 21.7 1.8 17 12-28 4-20 (104)
130 1w5c_T Cytochrome C-550; photo 22.0 67 0.0023 20.8 2.7 19 15-33 132-150 (163)
131 3zcc_A HAMP, osmolarity sensor 21.8 92 0.0032 17.3 3.0 18 18-35 36-53 (114)
132 3pxg_A Negative regulator of g 21.4 2.7E+02 0.0094 21.2 7.5 39 15-57 348-386 (468)
133 3hd7_B Syntaxin-1A; membrane p 21.4 87 0.003 20.2 3.1 27 47-73 7-33 (109)
134 2h1k_A IPF-1, pancreatic and d 21.4 85 0.0029 17.6 2.8 16 14-29 8-23 (63)
135 1g6u_A Domain swapped dimer; d 21.2 72 0.0024 19.1 2.5 21 15-35 16-36 (48)
136 2v4h_A NF-kappa-B essential mo 21.1 2.1E+02 0.0071 19.6 6.8 20 11-30 16-35 (110)
137 2l5g_B Putative uncharacterize 20.9 51 0.0018 19.4 1.7 16 17-32 21-36 (42)
138 1hro_A Cytochrome C2; electron 20.9 42 0.0014 19.8 1.4 15 17-31 91-105 (106)
139 2hvu_A PDCD5-like protein; YMR 20.8 69 0.0024 21.9 2.7 17 13-29 86-102 (116)
140 2d0w_A Cytochrome CL; electron 20.5 73 0.0025 21.1 2.7 20 14-33 108-127 (170)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=98.66 E-value=7.6e-08 Score=61.86 Aligned_cols=54 Identities=26% Similarity=0.386 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048534 19 DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLAT 76 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~LhrEVddLSeRLs~Ll~s 76 (91)
+.||+.+..|+.++|.. +.+.+-+-||++|+.||+.|+.+|..|.+...+|=..
T Consensus 19 ~~in~~f~~L~~lvP~~----~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 72 (82)
T 1am9_A 19 SSINDKIIELKDLVVGT----EAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA 72 (82)
T ss_dssp HHHHHHHHHHHHHHTCS----SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999973 4688889999999999999999999999988877543
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.64 E-value=1.1e-07 Score=60.37 Aligned_cols=52 Identities=25% Similarity=0.523 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048534 19 DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~LhrEVddLSeRLs~L 73 (91)
+.||+.+..|+.++|... +.+.|=+.||+.|+.||+.|+.++..|.+.+.+|
T Consensus 25 ~~in~~f~~Lr~lvP~~~---~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 25 DHIKDSFHSLRDSVPSLQ---GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHSGGGT---TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHCcCCC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999875 3578889999999999999999999999988766
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=98.56 E-value=2.9e-07 Score=58.42 Aligned_cols=53 Identities=25% Similarity=0.500 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048534 19 DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELL 74 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~LhrEVddLSeRLs~Ll 74 (91)
+.||+.+..|+.++|... +.+.|-+.||+.|++||+.|+.++..|.+.+.+|-
T Consensus 15 ~~in~~f~~Lr~lvP~~~---~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 15 DHIKDSFHSLRDSVPSLQ---GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHTTSGGGT---TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999875 46788899999999999999987777776665553
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=98.42 E-value=2e-07 Score=57.94 Aligned_cols=46 Identities=22% Similarity=0.443 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhchhhhhcc--CCcchHHHHHHHHHHHHHHHHHHHH
Q 048534 19 DQINDLVSKLQQLLPELRNNR--SDKVSAGKVLQETCNYIRSLHREVD 64 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~--~~~~SaskvLqETC~YIr~LhrEVd 64 (91)
+-||+.+..|+.|||...... +.+.|=+-+|+.||.||+.|++||.
T Consensus 15 ~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 15 NRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp HHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 579999999999999986443 5677889999999999999999874
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=98.22 E-value=2.1e-07 Score=56.77 Aligned_cols=46 Identities=24% Similarity=0.520 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhchhhhhcc-CCcchHHHHHHHHHHHHHHHHHHHH
Q 048534 19 DQINDLVSKLQQLLPELRNNR-SDKVSAGKVLQETCNYIRSLHREVD 64 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~-~~~~SaskvLqETC~YIr~LhrEVd 64 (91)
+.||+.+..|+.|+|...... ..+.+-+-||++||.||+.|+.|+.
T Consensus 18 ~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 18 DKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp HHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999986432 3467888899999999999998863
No 6
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=98.10 E-value=1e-05 Score=52.19 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048534 19 DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~LhrEVddLSeRLs~L 73 (91)
+.|++.+.+|..++|.+. .+.+.|-..||+.||.||+.|+.+...|.+...+|
T Consensus 14 ~~lk~~f~~Lr~~vP~~~--~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 14 AHLRLSLEKLKGLVPLGP--DSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHSSCCCS--SSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999873 24567777999999999999999998887766554
No 7
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.05 E-value=1.9e-05 Score=51.48 Aligned_cols=53 Identities=25% Similarity=0.376 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048534 19 DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSEL 73 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~LhrEVddLSeRLs~L 73 (91)
+.||+-+..|+.++|.+.. +.+.|=+.||+.|+.||+.|+.+...+.+-..+|
T Consensus 19 ~~ln~~f~~Lr~~vP~~~~--~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 19 NELKRSFFALRDQIPELEN--NEKAPKVVILKKATAYILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHTTCGGGTT--CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999998853 4578888999999999999999988776554443
No 8
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=97.98 E-value=1.3e-05 Score=51.54 Aligned_cols=44 Identities=30% Similarity=0.474 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 048534 19 DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDL 66 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~LhrEVddL 66 (91)
+.||+-+..|+.|+|. .+.+..=+-||+.||.||+.|+.++.=|
T Consensus 21 d~IN~~i~eL~~LvP~----~~~K~dK~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 21 DQFNVLIKELGSMLPG----NARKMDKSTVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp HHHHHHHHHHHTTSSS----CCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCC----CCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 7899999999999994 3457777889999999999999998643
No 9
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=97.98 E-value=1.2e-05 Score=51.81 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhchhhhhccCCcc-hHHHHHHHHHHHHHHHHHHHHHH
Q 048534 19 DQINDLVSKLQQLLPELRNNRSDKV-SAGKVLQETCNYIRSLHREVDDL 66 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~~~~~-SaskvLqETC~YIr~LhrEVddL 66 (91)
+.||+-+..|+.++|... .+++. |-..||+.||.||+.|+++|.++
T Consensus 18 ~~IN~~f~~Lr~~vP~~~--~~~K~~sK~~IL~~AieYI~~Lq~~l~e~ 64 (76)
T 3u5v_A 18 RDINEAFRELGRMCQMHL--KSDKAQTKLLILQQAVQVILGLEQQVRER 64 (76)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCC--CccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999753 23444 67789999999999999999864
No 10
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=97.97 E-value=1.4e-05 Score=54.45 Aligned_cols=50 Identities=28% Similarity=0.499 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048534 19 DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSER 69 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~LhrEVddLSeR 69 (91)
+.||+-+..|+.|+|..... ..+.+=+-||+.|+.||+.|+.++..|.+-
T Consensus 40 ~~In~~~~~L~~lvP~~~~~-~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 40 FNINDRIKELGTLIPKSNDP-DMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHSCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999988532 236677889999999999999999999864
No 11
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.41 E-value=0.00042 Score=46.21 Aligned_cols=53 Identities=26% Similarity=0.461 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048534 19 DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~LhrEVddLSeRLs~ 72 (91)
+-||+=|..|-.|+|..+.. ..+.+=+-||+-||.||+.|+.|+..+.|...+
T Consensus 5 ~nIN~~I~EL~~LiP~~~~~-~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r 57 (83)
T 4ath_A 5 FNINDRIKELGTLIPKSNDP-DMRWNKGTILKASVDYIRKLQREQQRAKDLENR 57 (83)
T ss_dssp HHHHHHHHHHHHHSCCCCCT-TCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhHHHhhhhhhccCCCCCCc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999999999987432 346677889999999999999999988876653
No 12
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=97.21 E-value=0.00056 Score=43.66 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHH
Q 048534 19 DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHR 61 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~Lhr 61 (91)
+.||+-+..|+.|+|.... ..++..=+-||+.|..||+.|+-
T Consensus 22 ~rIN~~l~eL~~LvP~~~~-~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 22 DKMNSFIDELASLVPTCNA-MSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHSHHHHT-CSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcccccc-ccccccHHHHHHHHHHHHHHHhc
Confidence 7899999999999998753 34677888999999999999863
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=97.10 E-value=0.00079 Score=41.41 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHHHHH
Q 048534 19 DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVD 64 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~LhrEVd 64 (91)
.+||+-...|+.++|... .+.|.|=..+|+.+.+||..|+.-++
T Consensus 15 ~~iN~af~~LR~~lP~~~--~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 15 HGLNAALDNLRKVVPCYS--KTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHTSSSCC--SSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCCC--CcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 579999999999999874 35678888999999999999987654
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=96.74 E-value=0.0016 Score=41.01 Aligned_cols=43 Identities=14% Similarity=0.315 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHHHHH
Q 048534 19 DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVD 64 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~LhrEVd 64 (91)
..||+-...|+.++|... +.+.|=..+|+.+.+||..|+.-++
T Consensus 25 ~~iN~af~~LR~~iP~~~---~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 25 SKVNEAFETLKRSTSSNP---NQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHTTSCSCT---TSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCCC---CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 579999999999999753 4688889999999999999997654
No 15
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=96.51 E-value=0.0035 Score=46.65 Aligned_cols=40 Identities=30% Similarity=0.554 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHH
Q 048534 18 DDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHR 61 (91)
Q Consensus 18 ddqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~Lhr 61 (91)
-|+||+.+..|..|||. ..+|..=+-||+.||+|||.++.
T Consensus 24 r~~~n~~~~~l~~~~p~----~~~~~dk~~il~~~~~~~~~~~~ 63 (361)
T 4f3l_A 24 RDQFNVLIKELGSMLPG----NARKMDKSTVLQKSIDFLRKHKE 63 (361)
T ss_dssp HHHHHHHHHHHHHTCCS----SSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC----CCCCcCHHHHHHHHHHHHHHHHh
Confidence 38999999999999993 23466666799999999999873
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=96.25 E-value=0.0066 Score=39.16 Aligned_cols=41 Identities=32% Similarity=0.555 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHH
Q 048534 19 DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHR 61 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~Lhr 61 (91)
..+|+-..+|+.++|... .+.|.|=-++||-+.+||.-|+.
T Consensus 27 ~~lN~aF~~LR~~VP~~p--~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 27 DDMNHCYSRLRELVPGVP--RGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp SHHHHHHHHHHHHCCCCC--TTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCC--CCCCccHHHHHHHHHHHHHHHHc
Confidence 579999999999999984 34678888999999999999873
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=95.81 E-value=0.013 Score=44.22 Aligned_cols=42 Identities=24% Similarity=0.421 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHH
Q 048534 19 DQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHR 61 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~Lhr 61 (91)
|+||+.+..|..|||..+. ...|..=+-||+.||+|||.|+.
T Consensus 26 ~~~n~~~~~L~~l~p~~~~-~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 26 DKMNSFIDELASLVPTCNA-MSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp HHHHHHHHHHHHHCHHHHH-CSSCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCc-cccccCHHHHHHHHHHHHHHhhc
Confidence 7899999999999998742 34566677899999999999874
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=95.09 E-value=0.046 Score=37.08 Aligned_cols=42 Identities=38% Similarity=0.605 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHHHHH
Q 048534 21 INDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVD 64 (91)
Q Consensus 21 i~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~LhrEVd 64 (91)
+|+-..+|+..+|... .+.|.|=-++|+-+.+||..|+.-++
T Consensus 40 lN~AF~~LR~~vP~~p--~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 40 MNDCYSKLKELVPSIP--QNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp HHHHHHHHHHHCTTSC--SSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCC--CCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999874 34577778999999999998876554
No 19
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=81.73 E-value=1.1 Score=28.73 Aligned_cols=26 Identities=38% Similarity=0.704 Sum_probs=23.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhchhhh
Q 048534 11 SGSSRITDDQINDLVSKLQQLLPELR 36 (91)
Q Consensus 11 ~~~s~isddqi~dLvsKLQaLLPe~~ 36 (91)
+|++.+++-++..+|+.++.|+|++.
T Consensus 3 ~~~~~~~~~~l~s~I~qV~DLfPdLG 28 (71)
T 2di0_A 3 SGSSGMCGVELDSLISQVKDLLPDLG 28 (71)
T ss_dssp CCCSCCSSHHHHHHHHHHHHHCCSSC
T ss_pred CCCCCCcHHHHHHHHHHHHHHcccCC
Confidence 46778999999999999999999994
No 20
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=80.93 E-value=2.4 Score=25.28 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCh------hHHHHHHHHhc
Q 048534 54 NYIRSLHREVDDLSERLSELLATTDT------AQAAIIRSLLM 90 (91)
Q Consensus 54 ~YIr~LhrEVddLSeRLs~Ll~s~D~------~~a~iiRsLL~ 90 (91)
.||..|+..|+.|-..|.+|....|. +..+-|+..|.
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~~~~l~~~~~~~s~~~i~~~l~ 87 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFPREDLDMILKMDSLQDIKALLT 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSSCHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchhhHHhhcCCCHHHHHHHHh
Confidence 48999999999999999999888776 33455555543
No 21
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=79.23 E-value=6.9 Score=23.09 Aligned_cols=50 Identities=22% Similarity=0.386 Sum_probs=39.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh--hHHHHHHHHhc
Q 048534 41 DKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATTDT--AQAAIIRSLLM 90 (91)
Q Consensus 41 ~~~SaskvLqETC~YIr~LhrEVddLSeRLs~Ll~s~D~--~~a~iiRsLL~ 90 (91)
.+++|++.=+--=-||..|+.+|+.|...-.+|-..+.. .+-+-++.+|+
T Consensus 9 Nr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 9 NRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367777766666679999999999999999999888876 66666776664
No 22
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=78.88 E-value=0.51 Score=32.24 Aligned_cols=20 Identities=30% Similarity=0.606 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHHhch
Q 048534 14 SRITDDQINDLVSKLQQLLP 33 (91)
Q Consensus 14 s~isddqi~dLvsKLQaLLP 33 (91)
.|||||||.+++..++..||
T Consensus 117 ~Rfsee~ie~IL~~i~~~lp 136 (136)
T 3ayh_A 117 ERFKEEDIFKLVEKINTTFP 136 (136)
T ss_dssp HHHTTTTHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHHhCc
Confidence 57999999999999999998
No 23
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=75.92 E-value=9 Score=22.90 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=39.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh--hHHHHHHHHhc
Q 048534 40 SDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATTDT--AQAAIIRSLLM 90 (91)
Q Consensus 40 ~~~~SaskvLqETC~YIr~LhrEVddLSeRLs~Ll~s~D~--~~a~iiRsLL~ 90 (91)
..+++|+|-=+--=.||..|+.+|+.|...=.+|-..++. .+-.-++.+|.
T Consensus 9 rNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 9 RNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888876777779999999999999998888887775 55555665553
No 24
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=72.09 E-value=15 Score=24.22 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhccC
Q 048534 45 AGKVLQETCNYIRSLH--REVDDLSERLSELLATTD 78 (91)
Q Consensus 45 askvLqETC~YIr~Lh--rEVddLSeRLs~Ll~s~D 78 (91)
+.++++ .||+.|| .|+.|..-.|-.++|..-
T Consensus 36 ~~~~~~---~hI~~Lh~YNeiKD~gq~L~g~iA~~r 68 (85)
T 3viq_B 36 AKQTVQ---KHIDLLHTYNEIRDIALGMIGKVAEHE 68 (85)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 455554 5999999 599999999999887653
No 25
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=68.38 E-value=3.5 Score=29.37 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 048534 47 KVLQETCNYIRSLHREVDDLSERLSELLATTD 78 (91)
Q Consensus 47 kvLqETC~YIr~LhrEVddLSeRLs~Ll~s~D 78 (91)
.+.+.--.=-+.||.||++.+.++++|=+-++
T Consensus 52 ~~F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~ 83 (140)
T 1xaw_A 52 RNFDTGLQEYKSLQSVLDEINKELSRLDKELD 83 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444458899999999999999765544
No 26
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens}
Probab=68.29 E-value=2.9 Score=32.36 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=34.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHH
Q 048534 12 GSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRS 58 (91)
Q Consensus 12 ~~s~isddqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~ 58 (91)
|...||.+-||.||.+.+.-++.+.. +..-....+-++.|+.||+.
T Consensus 252 g~~~Vt~~~in~LI~lI~~~l~~~~~-~~~~~~~~~~f~~tl~yI~~ 297 (298)
T 2r17_C 252 ENDAVTIQVLNQLIQKIREDLPNLES-SEETEQINKHFHNTLEHLRL 297 (298)
T ss_dssp TCTTSCHHHHHHHHHHHHTTTTSSCC-CHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcccHHHHHHHHHHHHHHhhcccC-ccchHHHHHHHHHHHHHHhc
Confidence 44569999999999999998864322 11123466889999999974
No 27
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=66.76 E-value=3.8 Score=24.41 Aligned_cols=49 Identities=24% Similarity=0.344 Sum_probs=35.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh--hHHHHHHHHh
Q 048534 41 DKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATTDT--AQAAIIRSLL 89 (91)
Q Consensus 41 ~~~SaskvLqETC~YIr~LhrEVddLSeRLs~Ll~s~D~--~~a~iiRsLL 89 (91)
.+++|.+-=+--=-||..|+.+|+.|...=.+|-..+.. .+.+.++.+|
T Consensus 9 Nr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 9 NRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777766767789999999999999988888877765 4444444444
No 28
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=66.71 E-value=3.2 Score=24.09 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 048534 54 NYIRSLHREVDDLSERLSELL 74 (91)
Q Consensus 54 ~YIr~LhrEVddLSeRLs~Ll 74 (91)
.||..|+.+|+.|-..|.+|-
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999998887653
No 29
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=66.29 E-value=18 Score=21.67 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=42.0
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh--hHHHHHHHHhc
Q 048534 39 RSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATTDT--AQAAIIRSLLM 90 (91)
Q Consensus 39 ~~~~~SaskvLqETC~YIr~LhrEVddLSeRLs~Ll~s~D~--~~a~iiRsLL~ 90 (91)
...+++|++-=|--=.++..|+.+|++|...=.+|-..++. .+-..++.||.
T Consensus 8 ~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 8 EQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577888877777788999999999999999998888876 66677777764
No 30
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=65.49 E-value=7.4 Score=22.23 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 048534 54 NYIRSLHREVDDLSERLSELLAT 76 (91)
Q Consensus 54 ~YIr~LhrEVddLSeRLs~Ll~s 76 (91)
.||..|+.+|+.|-+.|.+|-+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999998888877554
No 31
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=65.39 E-value=5 Score=24.37 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHhch
Q 048534 15 RITDDQINDLVSKLQQLLP 33 (91)
Q Consensus 15 ~isddqi~dLvsKLQaLLP 33 (91)
.+||+||.+|+.-|..-.|
T Consensus 81 ~Lsd~ei~~l~~Yi~~~~p 99 (99)
T 3dp5_A 81 MIPPADALKIGEYVVASFP 99 (99)
T ss_dssp TSCHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 6999999999999988766
No 32
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=62.31 E-value=6.2 Score=22.54 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHHhch
Q 048534 15 RITDDQINDLVSKLQQLLP 33 (91)
Q Consensus 15 ~isddqi~dLvsKLQaLLP 33 (91)
.+||+||.+|+.-|..+-|
T Consensus 67 ~ls~~ei~~l~~yi~~~~p 85 (85)
T 3cu4_A 67 MIPPADALKIGEYVVASFP 85 (85)
T ss_dssp TSCHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHhCc
Confidence 7999999999998887654
No 33
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=61.00 E-value=4.9 Score=22.56 Aligned_cols=18 Identities=11% Similarity=0.254 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048534 14 SRITDDQINDLVSKLQQL 31 (91)
Q Consensus 14 s~isddqi~dLvsKLQaL 31 (91)
..+||+||.+|+.-|..|
T Consensus 69 ~~ls~~ei~~l~~yl~sl 86 (87)
T 2zxy_A 69 KGLSDAELKALADFILSH 86 (87)
T ss_dssp GGCCHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 479999999999888754
No 34
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=60.97 E-value=6.8 Score=21.34 Aligned_cols=17 Identities=47% Similarity=0.722 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 048534 58 SLHREVDDLSERLSELL 74 (91)
Q Consensus 58 ~LhrEVddLSeRLs~Ll 74 (91)
.|-+|++||-|||-.|-
T Consensus 5 elykeledlqerlrklr 21 (27)
T 3twe_A 5 ELYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46789999999998763
No 35
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=59.96 E-value=27 Score=22.83 Aligned_cols=54 Identities=30% Similarity=0.433 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048534 12 GSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSE 72 (91)
Q Consensus 12 ~~s~isddqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~LhrEVddLSeRLs~ 72 (91)
|+.++..|.-.|++.|| +=|++.+ .-....||.--.---+..++||||-+.|..
T Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~EKTIDDLEDkL~~ 55 (77)
T 3mtu_E 2 GSGPLKPEEHEDILNKL--LDPELAQ-----SERTEALQQLRVNYGSFVSEYNDLEEKVAH 55 (77)
T ss_dssp ------CHHHHHHHHHT--TCC---C-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchhHHHHHHHh--cCHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888887 4577742 223566766544445899999999998754
No 36
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=59.52 E-value=6.4 Score=22.62 Aligned_cols=18 Identities=6% Similarity=0.165 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048534 14 SRITDDQINDLVSKLQQL 31 (91)
Q Consensus 14 s~isddqi~dLvsKLQaL 31 (91)
..+||+||.+|+.-+...
T Consensus 60 ~~Lsd~ei~~l~~yi~~~ 77 (78)
T 1gks_A 60 GRADREDLVKAIEYMLST 77 (78)
T ss_dssp TTBCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 469999999999887654
No 37
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=59.31 E-value=3.4 Score=24.43 Aligned_cols=14 Identities=50% Similarity=0.733 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHH
Q 048534 60 HREVDDLSERLSEL 73 (91)
Q Consensus 60 hrEVddLSeRLs~L 73 (91)
..|-|+|++||+.|
T Consensus 35 ~~~eD~L~~RLaaL 48 (50)
T 3eab_G 35 SAEQDELSQRLARL 48 (50)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHH
Confidence 44789999999876
No 38
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=57.36 E-value=9.9 Score=21.28 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048534 14 SRITDDQINDLVSKLQQL 31 (91)
Q Consensus 14 s~isddqi~dLvsKLQaL 31 (91)
..+||+||.+|+.-|..+
T Consensus 64 ~~ls~~ei~~l~~yl~~~ 81 (86)
T 3ph2_B 64 GRLTDDQIAAVAAYVLDQ 81 (86)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHh
Confidence 569999999999888765
No 39
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=57.19 E-value=10 Score=21.20 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048534 14 SRITDDQINDLVSKLQQL 31 (91)
Q Consensus 14 s~isddqi~dLvsKLQaL 31 (91)
..+||+||.+|+.-|..+
T Consensus 63 ~~ls~~ei~~l~~yl~~~ 80 (85)
T 1gdv_A 63 GRLVDEDIEDAANYVLSQ 80 (85)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 369999999999988775
No 40
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=56.17 E-value=9.3 Score=21.52 Aligned_cols=18 Identities=17% Similarity=0.435 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048534 14 SRITDDQINDLVSKLQQL 31 (91)
Q Consensus 14 s~isddqi~dLvsKLQaL 31 (91)
..+||+||.+|+.-|..+
T Consensus 70 ~~ls~~ei~~l~~yl~~l 87 (93)
T 3dr0_A 70 GRLSDADIANVAAYIADQ 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 468999999999988765
No 41
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=55.34 E-value=9.7 Score=21.49 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048534 14 SRITDDQINDLVSKLQQL 31 (91)
Q Consensus 14 s~isddqi~dLvsKLQaL 31 (91)
..+||+||.+|+.-|..+
T Consensus 65 ~~ls~~ei~~l~~yl~~~ 82 (88)
T 3dmi_A 65 GRLSDEEIANVAAYVLAS 82 (88)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 469999999999988765
No 42
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=53.77 E-value=7.8 Score=21.67 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 048534 54 NYIRSLHREVDDLSERLSELLAT 76 (91)
Q Consensus 54 ~YIr~LhrEVddLSeRLs~Ll~s 76 (91)
.=|+.|+.|.|++.|++.++...
T Consensus 11 kKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 11 RKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999988654
No 43
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=53.70 E-value=11 Score=21.67 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHHHHhch
Q 048534 14 SRITDDQINDLVSKLQQLLP 33 (91)
Q Consensus 14 s~isddqi~dLvsKLQaLLP 33 (91)
..+||+||.+|+.-|..+=|
T Consensus 65 ~~ls~~ei~~l~~yl~~l~~ 84 (87)
T 1cno_A 65 TALSDADIANLAAYYASNPA 84 (87)
T ss_dssp TTCCHHHHHHHHHHHHHSCT
T ss_pred hhCCHHHHHHHHHHHHhCCc
Confidence 36999999999999987644
No 44
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=53.69 E-value=12 Score=21.20 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=16.6
Q ss_pred CCCCHHHHHHHHHHHHHhch
Q 048534 14 SRITDDQINDLVSKLQQLLP 33 (91)
Q Consensus 14 s~isddqi~dLvsKLQaLLP 33 (91)
..+||+||.+|+.-|..+-+
T Consensus 66 ~~ls~~ei~~l~~yl~~~~~ 85 (89)
T 1c6r_A 66 GTLDDDEIAAVAAYVYDQAS 85 (89)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHcc
Confidence 46999999999998887643
No 45
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=53.30 E-value=9.9 Score=21.57 Aligned_cols=17 Identities=18% Similarity=0.352 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHHHh
Q 048534 15 RITDDQINDLVSKLQQL 31 (91)
Q Consensus 15 ~isddqi~dLvsKLQaL 31 (91)
.+||+||.+|+.-|..+
T Consensus 63 ~Lsd~ei~~l~~yl~~l 79 (80)
T 1ayg_A 63 NVTDAEAKQLAQWILSI 79 (80)
T ss_dssp CCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 69999999999887654
No 46
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=53.15 E-value=9.8 Score=21.55 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048534 14 SRITDDQINDLVSKLQQL 31 (91)
Q Consensus 14 s~isddqi~dLvsKLQaL 31 (91)
..+||+||.+|+.-|..|
T Consensus 63 ~~Ls~~ei~~l~~yl~~l 80 (81)
T 1a56_A 63 VNVSDADAKALADWILTL 80 (81)
T ss_dssp CSSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 468999999999888754
No 47
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=53.14 E-value=8.9 Score=21.80 Aligned_cols=18 Identities=17% Similarity=0.510 Sum_probs=14.9
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048534 14 SRITDDQINDLVSKLQQL 31 (91)
Q Consensus 14 s~isddqi~dLvsKLQaL 31 (91)
..+||+||.+|+.-|..|
T Consensus 62 ~~Ls~~ei~~l~~Yl~sl 79 (79)
T 1c53_A 62 KRYSDEEMKAMADYMSKL 79 (79)
T ss_pred hhCCHHHHHHHHHHHHhC
Confidence 468999999999887654
No 48
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=53.08 E-value=12 Score=21.35 Aligned_cols=20 Identities=10% Similarity=0.318 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHHHHHHHhch
Q 048534 14 SRITDDQINDLVSKLQQLLP 33 (91)
Q Consensus 14 s~isddqi~dLvsKLQaLLP 33 (91)
..+||+||.+|+.-|..+-+
T Consensus 65 ~~ls~~ei~~l~~yl~~~~~ 84 (90)
T 1cyi_A 65 DRLSEEEIQAVAEYVFKQAT 84 (90)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccc
Confidence 46999999999999887754
No 49
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=53.00 E-value=12 Score=21.15 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=15.6
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048534 14 SRITDDQINDLVSKLQQL 31 (91)
Q Consensus 14 s~isddqi~dLvsKLQaL 31 (91)
..+||+||.+|+.-|..+
T Consensus 67 ~~ls~~ei~~l~~yl~~~ 84 (89)
T 1f1f_A 67 GRLSPLQIEDVAAYVVDQ 84 (89)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 459999999999988875
No 50
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=52.07 E-value=7.8 Score=21.88 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048534 14 SRITDDQINDLVSKLQQL 31 (91)
Q Consensus 14 s~isddqi~dLvsKLQaL 31 (91)
..+||+||.+|+.-|..+
T Consensus 61 ~~Ls~~ei~~l~~yl~~l 78 (79)
T 2d0s_A 61 PQVAEADIEKIVRWVLTL 78 (79)
T ss_dssp TTSCHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 378999999999877643
No 51
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=51.54 E-value=9.9 Score=21.34 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHHHh
Q 048534 15 RITDDQINDLVSKLQQL 31 (91)
Q Consensus 15 ~isddqi~dLvsKLQaL 31 (91)
.+||+||.+|+.-|..|
T Consensus 65 ~ls~~ei~~l~~yl~~l 81 (82)
T 2exv_A 65 AVSDDEAQTLAKWVLSQ 81 (82)
T ss_dssp CCCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 68999999999887654
No 52
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=51.38 E-value=10 Score=22.11 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHh
Q 048534 19 DQINDLVSKLQQL 31 (91)
Q Consensus 19 dqi~dLvsKLQaL 31 (91)
|.|+++-+||++|
T Consensus 26 edi~~MqsRLaAL 38 (40)
T 2xze_Q 26 EALEAMQSRLATL 38 (40)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4688999999987
No 53
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=50.96 E-value=12 Score=20.94 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHHHh
Q 048534 15 RITDDQINDLVSKLQQL 31 (91)
Q Consensus 15 ~isddqi~dLvsKLQaL 31 (91)
.+||+||.+|+.-|..|
T Consensus 65 ~ls~~ei~~l~~yl~~l 81 (82)
T 1cch_A 65 PVTEEEAKILAEWVLSL 81 (82)
T ss_dssp SCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 68999999999888764
No 54
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=50.60 E-value=69 Score=23.24 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Q 048534 42 KVSAGKVLQETCNYIRSLHREVDDLSERLSELLATTDT 79 (91)
Q Consensus 42 ~~SaskvLqETC~YIr~LhrEVddLSeRLs~Ll~s~D~ 79 (91)
......++.+|..|+.....-.+.+.+.|.+.|...|.
T Consensus 104 ~~~~~~l~~~~~~~l~~v~~~~~~~~~~l~eIm~AqdF 141 (214)
T 1kmi_Z 104 LADARELVTDTRQFLADVPAHTSFTNAQLLKIMMAQDF 141 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34555677889999999999999999999999988876
No 55
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=50.18 E-value=12 Score=20.84 Aligned_cols=18 Identities=6% Similarity=0.030 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048534 14 SRITDDQINDLVSKLQQL 31 (91)
Q Consensus 14 s~isddqi~dLvsKLQaL 31 (91)
..+||+||.+|+.-|..+
T Consensus 53 ~~ls~~ei~~l~~yl~~~ 70 (71)
T 1c75_A 53 GIAKGAEAEAVAAWLAEK 70 (71)
T ss_dssp CSSCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 569999999999877653
No 56
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=49.50 E-value=8.3 Score=21.89 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=12.6
Q ss_pred CCCccccccCCCCCCCCHHHHHHHHHHHH
Q 048534 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQ 29 (91)
Q Consensus 1 MSsrrsrs~~~~~s~isddqi~dLvsKLQ 29 (91)
|+.||.|.. ||++|+..|-...+
T Consensus 1 ~~~rr~Rt~------ft~~Q~~~Le~~F~ 23 (61)
T 2hdd_A 1 MAEKRPRTA------FSSEQLARLKREFN 23 (61)
T ss_dssp ------CCC------CCHHHHHHHHHHHH
T ss_pred CCCCCCCCC------CCHHHHHHHHHHHH
Confidence 566665544 99999998866554
No 57
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=49.42 E-value=13 Score=21.17 Aligned_cols=17 Identities=6% Similarity=0.130 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHh
Q 048534 15 RITDDQINDLVSKLQQL 31 (91)
Q Consensus 15 ~isddqi~dLvsKLQaL 31 (91)
.+||+||.+|+.-|..+
T Consensus 69 ~ls~~ei~~l~~yl~~~ 85 (87)
T 2zon_G 69 AADEATLRAAVAYMMDA 85 (87)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 79999999999888764
No 58
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=48.89 E-value=15 Score=21.07 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHHHHhch
Q 048534 14 SRITDDQINDLVSKLQQLLP 33 (91)
Q Consensus 14 s~isddqi~dLvsKLQaLLP 33 (91)
..+||+||.+|+.-|..+-+
T Consensus 68 ~~ls~~ei~~l~~yl~~~~~ 87 (91)
T 1ls9_A 68 DRLDEDDIEAVSNYVYDQAV 87 (91)
T ss_dssp TTSCHHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHhcc
Confidence 46999999999998887644
No 59
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=47.70 E-value=14 Score=21.75 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048534 14 SRITDDQINDLVSKLQQL 31 (91)
Q Consensus 14 s~isddqi~dLvsKLQaL 31 (91)
..+||+||.+|+.-|..+
T Consensus 85 ~~ls~~ei~~l~~yl~~l 102 (103)
T 2zzs_A 85 SLLSDDDIANLAAYYSSL 102 (103)
T ss_dssp TTCCHHHHHHHHHHHHHC
T ss_pred hhCCHHHHHHHHHHHHhC
Confidence 469999999999888754
No 60
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=47.49 E-value=14 Score=21.72 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHhchhh
Q 048534 15 RITDDQINDLVSKLQQLLPEL 35 (91)
Q Consensus 15 ~isddqi~dLvsKLQaLLPe~ 35 (91)
.+||+||.+|+.-|..+-+..
T Consensus 80 ~Ls~~ei~~l~~yl~~~~~~~ 100 (110)
T 2l4d_A 80 RLGDAEVSALISYLEEETARL 100 (110)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccccc
Confidence 489999999999999876543
No 61
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=46.36 E-value=12 Score=21.52 Aligned_cols=18 Identities=11% Similarity=0.394 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048534 14 SRITDDQINDLVSKLQQL 31 (91)
Q Consensus 14 s~isddqi~dLvsKLQaL 31 (91)
..+||+||.+|+.-|..|
T Consensus 81 ~~ls~~ei~~l~~yl~sl 98 (99)
T 1w2l_A 81 ASLSEREVAALIEFIKQQ 98 (99)
T ss_dssp GGCCHHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHHHc
Confidence 358999999999888754
No 62
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=46.30 E-value=46 Score=24.33 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhchhhhhccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Q 048534 19 DQINDLVSKLQQLLPELRNNRSDK-VSAGKVLQETCNYIRSLHREVDDLSERLSELLATTDT 79 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~~r~~~~-~SaskvLqETC~YIr~LhrEVddLSeRLs~Ll~s~D~ 79 (91)
..+.++..|++.++-.+..-...+ .+-..=+.+.-.++..+..|+.+|.+++.+|-+..+.
T Consensus 63 ~~~~~~~~k~~~~~~~L~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~ 124 (357)
T 3rrk_A 63 KRWEAVVSQAEQSLTVVGLATVPSSKPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQT 124 (357)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCSSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccccccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888877775322111 1000005556667888888888888888888777665
No 63
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=46.23 E-value=17 Score=20.83 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=16.4
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 048534 14 SRITDDQINDLVSKLQQLL 32 (91)
Q Consensus 14 s~isddqi~dLvsKLQaLL 32 (91)
..+||+||.+|+.-|..+=
T Consensus 56 ~~ls~~ei~~l~~yl~~~~ 74 (80)
T 1wve_C 56 SYVDDESLTQVAEYLSSLP 74 (80)
T ss_dssp TTSCHHHHHHHHHHHHHSC
T ss_pred cCCCHHHHHHHHHHHHHCc
Confidence 4699999999999988764
No 64
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=45.92 E-value=25 Score=20.75 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 048534 50 QETCNYIRSLHREVDDLSERLS 71 (91)
Q Consensus 50 qETC~YIr~LhrEVddLSeRLs 71 (91)
..+..-+..|+++||||-+.|.
T Consensus 8 efAERsV~KLek~ID~LEdeL~ 29 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELY 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778899999999988775
No 65
>4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A*
Probab=45.10 E-value=13 Score=26.64 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHH
Q 048534 14 SRITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETC 53 (91)
Q Consensus 14 s~isddqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC 53 (91)
-.|++++|.++..-|+.-||+...| +++.--++|.-||
T Consensus 248 H~i~~~~l~~~~~fL~~~Lpd~~gr--~~a~~~~~~~~~~ 285 (285)
T 4fhz_A 248 HGIAPDGLSVALAFLKERLPDACGR--TRAPPPPPLRSGC 285 (285)
T ss_dssp SSCCHHHHHHHHHHHHHHCC--------------------
T ss_pred CCCCHHHHHHHHHHHHHHCcCCccc--ccchhhhcccCCC
Confidence 4589999999999999999987533 2333345666666
No 66
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=44.74 E-value=18 Score=21.05 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHHhch
Q 048534 14 SRITDDQINDLVSKLQQLLP 33 (91)
Q Consensus 14 s~isddqi~dLvsKLQaLLP 33 (91)
..+||+||.+|+.-|..+-+
T Consensus 77 ~~ls~~ei~~l~~yl~~~~~ 96 (105)
T 2ce0_A 77 PRLQDEEIKLLAEFVKFQAD 96 (105)
T ss_dssp CCBCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhh
Confidence 46999999999999988743
No 67
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=43.58 E-value=16 Score=22.96 Aligned_cols=17 Identities=35% Similarity=0.458 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHHh
Q 048534 15 RITDDQINDLVSKLQQL 31 (91)
Q Consensus 15 ~isddqi~dLvsKLQaL 31 (91)
.+||+||.+|+.-|+.|
T Consensus 119 ~Ls~~ei~~l~aYl~sl 135 (137)
T 2c1d_B 119 ILNAQQIEDVVAFLVTL 135 (137)
T ss_dssp SSCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 79999999999988764
No 68
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=42.83 E-value=42 Score=19.81 Aligned_cols=37 Identities=30% Similarity=0.482 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCh--hHHHHHHHHhc
Q 048534 54 NYIRSLHREVDDLSERLSELLATTDT--AQAAIIRSLLM 90 (91)
Q Consensus 54 ~YIr~LhrEVddLSeRLs~Ll~s~D~--~~a~iiRsLL~ 90 (91)
.|.-.|...|+||-.+.++|=..+.. .+-..+|-.|+
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 48899999999999999998777765 55556665554
No 69
>2wvq_A Small S protein; prion-binding protein, prion, prion regulatory domain, heter incompatibility, prion- binding protein; 2.00A {Podospora anserina} PDB: 2wvn_A 2wvo_A
Probab=40.83 E-value=24 Score=25.54 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhchhhh
Q 048534 19 DQINDLVSKLQQLLPELR 36 (91)
Q Consensus 19 dqi~dLvsKLQaLLPe~~ 36 (91)
++|.++|.+|-.|+|...
T Consensus 165 ~~i~~lvd~L~~L~p~~~ 182 (225)
T 2wvq_A 165 DQVARFVDELEKAFPIEA 182 (225)
T ss_dssp HHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHCCcHH
Confidence 578899999999999865
No 70
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix transcriptional regulator cycle; 2.50A {Homo sapiens}
Probab=39.56 E-value=67 Score=24.83 Aligned_cols=68 Identities=18% Similarity=0.243 Sum_probs=37.9
Q ss_pred CCCccccccCCCCCCCCHHHHHHHHHHHHHhchhhhhcc----CCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048534 1 MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPELRNNR----SDKVSAGKVLQETCNYIRSLHREVDDLSE 68 (91)
Q Consensus 1 MSsrrsrs~~~~~s~isddqi~dLvsKLQaLLPe~~~r~----~~~~SaskvLqETC~YIr~LhrEVddLSe 68 (91)
|++-.++.....+.-..-+++-.|+-.||++||.++.-. ....++.--+.+-....+-|+.|+--|+-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~l~~~a~~l~~~aTKlsL 72 (360)
T 3ay5_A 1 MASATAPAAAVPTLASPLEQLRHLAEELRLLLPRVRVGEAQETTEEFNREMFWRRLNEAAVTVSREATTLTI 72 (360)
T ss_dssp -------------CCCHHHHHHHHHHHHHTHHHHHHSCCC---CCSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccccccCCcccchHHHHHHHHHHHHHHHHHhccCCCCCCcccCCccchHHHHHHHHHHHHhhhHHhhh
Confidence 554444333222233445889999999999999986222 22445655556666677777777766653
No 71
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=39.15 E-value=16 Score=20.99 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=13.8
Q ss_pred CCCCHHHHHHHHHHHHH
Q 048534 14 SRITDDQINDLVSKLQQ 30 (91)
Q Consensus 14 s~isddqi~dLvsKLQa 30 (91)
..+||+||.+|+.-+..
T Consensus 63 ~~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 63 TDCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SSCCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 47999999999877653
No 72
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=39.06 E-value=34 Score=20.31 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=15.1
Q ss_pred CCCcccccc-CCCCCCCCHHHHHHHHHHHHHh
Q 048534 1 MSSRRSRSR-QSGSSRITDDQINDLVSKLQQL 31 (91)
Q Consensus 1 MSsrrsrs~-~~~~s~isddqi~dLvsKLQaL 31 (91)
||++++... ......+|++|+.+|....+.+
T Consensus 1 M~~~~~~~~~~~~~~~l~~~~~~~l~~~F~~~ 32 (161)
T 3fwb_A 1 MSKNRSSLQSGPLNSELLEEQKQEIYEAFSLF 32 (161)
T ss_dssp --------CTTTTTTTSCHHHHHHHHHHHHHH
T ss_pred CCCCccccccCCCCCCCCHHHHHHHHHHHHHH
Confidence 776664333 2345779999988776655544
No 73
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=38.53 E-value=42 Score=21.00 Aligned_cols=20 Identities=10% Similarity=0.398 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHhchh
Q 048534 15 RITDDQINDLVSKLQQLLPE 34 (91)
Q Consensus 15 ~isddqi~dLvsKLQaLLPe 34 (91)
.+||+||.+|+.-|..+-+.
T Consensus 74 ~Lsd~ei~~l~~Yl~~~~~~ 93 (131)
T 1c52_A 74 QLKDEEIAAVLNHIATAWGD 93 (131)
T ss_dssp TSCHHHHHHHHHHHHHTTST
T ss_pred cCCHHHHHHHHHHHHHHcCC
Confidence 69999999999999988543
No 74
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.51 E-value=21 Score=21.90 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHHHHHHHhchhhh
Q 048534 13 SSRITDDQINDLVSKLQQLLPELR 36 (91)
Q Consensus 13 ~s~isddqi~dLvsKLQaLLPe~~ 36 (91)
.+.-++.|+...+.++|+++|++.
T Consensus 5 ~~~~~~~q~~~mv~~V~~mfP~vp 28 (58)
T 2ejs_A 5 SSGASNSQLNAMAHQIQEMFPQVP 28 (58)
T ss_dssp CSSCCCCHHHHHHHHHHHHCCSSC
T ss_pred cCCcchHHHHHHHHHHHHHcCCCC
Confidence 445578999999999999999983
No 75
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=38.50 E-value=20 Score=23.20 Aligned_cols=18 Identities=28% Similarity=0.518 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048534 14 SRITDDQINDLVSKLQQL 31 (91)
Q Consensus 14 s~isddqi~dLvsKLQaL 31 (91)
..+||+||.+|+.-|+.|
T Consensus 172 ~~Ls~~ei~~l~~Yl~sl 189 (190)
T 1m70_A 172 AKLSNKDIEALSSYIQGL 189 (190)
T ss_dssp TTCCHHHHHHHHHHHHTC
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 469999999999988764
No 76
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=38.03 E-value=26 Score=21.21 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHHhch
Q 048534 15 RITDDQINDLVSKLQQLLP 33 (91)
Q Consensus 15 ~isddqi~dLvsKLQaLLP 33 (91)
.+||+||.+|+.-|..+-+
T Consensus 104 ~Ls~~ei~~l~~Yl~~l~~ 122 (129)
T 1f1c_A 104 NISEDDLYNVAGYILLQPK 122 (129)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCc
Confidence 6999999999998887643
No 77
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=38.03 E-value=15 Score=20.51 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=9.6
Q ss_pred CCCCCCCHHHHHHHHHH
Q 048534 11 SGSSRITDDQINDLVSK 27 (91)
Q Consensus 11 ~~~s~isddqi~dLvsK 27 (91)
+|..+|.+.||.||+..
T Consensus 4 sgvtrfdekqieelldn 20 (31)
T 4h62_V 4 SGVTRFDEKQIEELLDN 20 (31)
T ss_dssp ------CHHHHHHHHHH
T ss_pred CccccccHHHHHHHHHH
Confidence 36789999999999754
No 78
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=37.83 E-value=8.2 Score=25.25 Aligned_cols=32 Identities=22% Similarity=0.462 Sum_probs=18.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhchhhhhccCCcchHHH
Q 048534 12 GSSRITDDQINDLVSKLQQLLPELRNNRSDKVSAGK 47 (91)
Q Consensus 12 ~~s~isddqi~dLvsKLQaLLPe~~~r~~~~~Sask 47 (91)
|++.+|++||.+|-.-.+ .+-..++..++...
T Consensus 1 ga~~Lt~eqi~elk~~F~----~~D~d~dG~I~~~E 32 (176)
T 2lhi_A 1 GSSNLTEEQIAEFKEAFA----LFDKDNNGSISSSE 32 (176)
T ss_dssp CCCCCCTTGGGHHHHHHH----TTCSSCSSCBCHHH
T ss_pred CCCcCCHHHHHHHHHHHH----HHCCCCCCCCCHHH
Confidence 567889999887644333 22333344555544
No 79
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=37.63 E-value=25 Score=21.25 Aligned_cols=19 Identities=16% Similarity=0.372 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHHHHhc
Q 048534 14 SRITDDQINDLVSKLQQLL 32 (91)
Q Consensus 14 s~isddqi~dLvsKLQaLL 32 (91)
..+||+||.+|+.-|..+=
T Consensus 103 ~~Ls~~ei~~l~~Yl~~l~ 121 (124)
T 3cp5_A 103 MALSEEQARAILEYLRQVA 121 (124)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 4699999999999988763
No 80
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1
Probab=37.12 E-value=24 Score=21.15 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHHh
Q 048534 15 RITDDQINDLVSKLQQL 31 (91)
Q Consensus 15 ~isddqi~dLvsKLQaL 31 (91)
.+||+||.+|+.-|..|
T Consensus 94 ~ls~~ei~~l~aYl~~l 110 (112)
T 1ccr_A 94 LXKPQERADLISYLKEA 110 (112)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 34999999999888765
No 81
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=37.06 E-value=37 Score=19.61 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhchhhhhcc-----CCcchHHHHHHHHHHH
Q 048534 18 DDQINDLVSKLQQLLPELRNNR-----SDKVSAGKVLQETCNY 55 (91)
Q Consensus 18 ddqi~dLvsKLQaLLPe~~~r~-----~~~~SaskvLqETC~Y 55 (91)
|+.+.+++.++|+..--.-.|. -.+..|..|+|..+..
T Consensus 2 d~~l~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~ 44 (64)
T 1wdc_A 2 DERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRK 44 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999665543332 2335788899987764
No 82
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=36.98 E-value=19 Score=22.64 Aligned_cols=17 Identities=41% Similarity=0.513 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHHHHh
Q 048534 15 RITDDQINDLVSKLQQL 31 (91)
Q Consensus 15 ~isddqi~dLvsKLQaL 31 (91)
.+||+||.+|+.-|+.|
T Consensus 120 ~Ls~~ei~~l~aYl~sl 136 (138)
T 1h32_B 120 LMTAGQIEDVVAYLMTL 136 (138)
T ss_dssp SSCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 78999999999988754
No 83
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=36.60 E-value=24 Score=22.60 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048534 14 SRITDDQINDLVSKLQQL 31 (91)
Q Consensus 14 s~isddqi~dLvsKLQaL 31 (91)
..+||+||.+|+.-|..|
T Consensus 166 ~~Ls~~ei~~l~~yl~sl 183 (183)
T 1h1o_A 166 KNITVAQMKDVAAYLSSL 183 (183)
T ss_dssp TTCCHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHHHHHHhC
Confidence 469999999999888754
No 84
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.55 E-value=17 Score=22.59 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=20.0
Q ss_pred CCCCCHHHHHHHHHHHHHhchhhh
Q 048534 13 SSRITDDQINDLVSKLQQLLPELR 36 (91)
Q Consensus 13 ~s~isddqi~dLvsKLQaLLPe~~ 36 (91)
.+.-++.|+...+.++|+++|++.
T Consensus 5 ~~~~~~~ql~~mv~~V~~mfP~vp 28 (61)
T 2ekf_A 5 SSGSPDVQLATLAQRVKEVLPHVP 28 (61)
T ss_dssp SSCCCCCCHHHHHHHHHHHCSSSC
T ss_pred CCCCccHHHHHHHHHHHHHcCCCC
Confidence 344567899999999999999973
No 85
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=36.03 E-value=1e+02 Score=21.08 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048534 50 QETCNYIRSLHREVDDLSERL 70 (91)
Q Consensus 50 qETC~YIr~LhrEVddLSeRL 70 (91)
---..|+.+|+.||+++-|+|
T Consensus 152 ~~kL~f~~kl~~~i~~~~~~l 172 (174)
T 3hho_A 152 IRKLKFIAKLKNEVERVEDQL 172 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334689999999999998876
No 86
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=35.77 E-value=27 Score=22.92 Aligned_cols=22 Identities=14% Similarity=0.466 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHHHHHHhchh
Q 048534 13 SSRITDDQINDLVSKLQQLLPE 34 (91)
Q Consensus 13 ~s~isddqi~dLvsKLQaLLPe 34 (91)
.|+.||+|+..|+..|-+.|-.
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEK 25 (76)
T 2jr2_A 4 VSKYSNERVEKIIQDLLDVLVK 25 (76)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHh
Confidence 5789999999999999988854
No 87
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=35.12 E-value=31 Score=21.47 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHHHHHHHhchhh
Q 048534 14 SRITDDQINDLVSKLQQLLPEL 35 (91)
Q Consensus 14 s~isddqi~dLvsKLQaLLPe~ 35 (91)
+.++|+|+..+|.|.+.++-+-
T Consensus 54 P~l~ee~~~~~vek~~~~i~~~ 75 (77)
T 3zzp_A 54 PNLDQSQLQNEKEIIQRALENY 75 (77)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhc
Confidence 5689999999999999998653
No 88
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=34.10 E-value=30 Score=22.82 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHHHHHhchh
Q 048534 13 SSRITDDQINDLVSKLQQLLPE 34 (91)
Q Consensus 13 ~s~isddqi~dLvsKLQaLLPe 34 (91)
.|+.||+|+..|+..|-+.|-.
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEK 25 (80)
T 2juw_A 4 QSKYSNTQVESLIAEILVVLEK 25 (80)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHh
Confidence 5789999999999999988853
No 89
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=33.69 E-value=30 Score=23.01 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHHHHHhchh
Q 048534 13 SSRITDDQINDLVSKLQQLLPE 34 (91)
Q Consensus 13 ~s~isddqi~dLvsKLQaLLPe 34 (91)
.|+.||+|+..|+..|-+.|-.
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEK 25 (83)
T 2jrx_A 4 ISRYSDEQVEQLLAELLNVLEK 25 (83)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHh
Confidence 5789999999999999988854
No 90
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=33.25 E-value=31 Score=22.96 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.2
Q ss_pred CCCCCHHHHHHHHHHHHHhchh
Q 048534 13 SSRITDDQINDLVSKLQQLLPE 34 (91)
Q Consensus 13 ~s~isddqi~dLvsKLQaLLPe 34 (91)
.|+.||+|+..|+..|-+.|-.
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEK 25 (83)
T 2jpq_A 4 TSKYTDEQVEKILAEVALVLEK 25 (83)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHh
Confidence 5789999999999999988854
No 91
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=32.88 E-value=32 Score=22.72 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.0
Q ss_pred CCCCCHHHHHHHHHHHHHhchh
Q 048534 13 SSRITDDQINDLVSKLQQLLPE 34 (91)
Q Consensus 13 ~s~isddqi~dLvsKLQaLLPe 34 (91)
.|+.||+|+..|+..|-+.|-.
T Consensus 4 ~SKYsd~qvE~ll~eli~VLEK 25 (80)
T 2juz_A 4 HSKYSDAQLSAIVNDMIAVLEK 25 (80)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHh
Confidence 5789999999999999888753
No 92
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=32.22 E-value=20 Score=22.87 Aligned_cols=30 Identities=33% Similarity=0.429 Sum_probs=20.4
Q ss_pred HHHHHHhchhhhhccCCcc-----hHHHHHHHHHH
Q 048534 25 VSKLQQLLPELRNNRSDKV-----SAGKVLQETCN 54 (91)
Q Consensus 25 vsKLQaLLPe~~~r~~~~~-----SaskvLqETC~ 54 (91)
||-||.||-..+...+.+- -|-.+|+-.|+
T Consensus 16 VsELq~LLg~~gr~KsGrK~eL~~RaL~LL~~~~s 50 (65)
T 1v66_A 16 VSELQVLLGYAGRNKHGRKHELLTKALHLLKAGCS 50 (65)
T ss_dssp HHHHHHHHHTTCCCCCSCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHcCCCCcCcHHHHHHHHHHHHHcCCC
Confidence 6889999998865554432 45566666665
No 93
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=31.92 E-value=29 Score=20.31 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=13.0
Q ss_pred CCCHHHHHHHHHHHH
Q 048534 15 RITDDQINDLVSKLQ 29 (91)
Q Consensus 15 ~isddqi~dLvsKLQ 29 (91)
.+||+||.+|+.-+.
T Consensus 67 ~Lsd~ei~~v~~yi~ 81 (83)
T 1cc5_A 67 DCSDDELKAAIGKMS 81 (83)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 699999999987664
No 94
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=31.88 E-value=31 Score=21.31 Aligned_cols=19 Identities=21% Similarity=0.639 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhchhhh
Q 048534 18 DDQINDLVSKLQQLLPELR 36 (91)
Q Consensus 18 ddqi~dLvsKLQaLLPe~~ 36 (91)
..|+.+.+..+|+++|++.
T Consensus 14 ~sql~~Mve~V~~mFPqv~ 32 (58)
T 4g3o_A 14 QGQLNAMAHQIQEMFPQVP 32 (58)
T ss_dssp HHHHHHHHHHHHHHCTTSC
T ss_pred hHHHHHHHHHHHHHcCCCC
Confidence 3699999999999999984
No 95
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=30.46 E-value=34 Score=22.04 Aligned_cols=17 Identities=35% Similarity=0.741 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHHH
Q 048534 13 SSRITDDQINDLVSKLQ 29 (91)
Q Consensus 13 ~s~isddqi~dLvsKLQ 29 (91)
..+|||+++.+|+.++.
T Consensus 53 ~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 53 RSKITDEQLKELLKRVA 69 (80)
T ss_dssp CCCCCHHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHHHc
Confidence 57899999999998874
No 96
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.38 E-value=1.2e+02 Score=20.00 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048534 20 QINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLSERLSELL 74 (91)
Q Consensus 20 qi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~LhrEVddLSeRLs~Ll 74 (91)
+||-.|+.|+.++-.++..+ +-.---+=|.++..|++.|-+|+...-.+|+.+.
T Consensus 25 ~In~~vs~l~r~v~~LGT~k-Dt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~ 78 (130)
T 2dnx_A 25 RISQATAQIKNLMSQLGTKQ-DSSKLQENLQQLQHSTNQLAKETNELLKELGSLP 78 (130)
T ss_dssp HHHHHHHHHHHHHHHHCSSS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56667888888887776433 3333445567777777777777777666666654
No 97
>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=29.98 E-value=35 Score=20.07 Aligned_cols=16 Identities=13% Similarity=0.372 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHHHHh
Q 048534 16 ITDDQINDLVSKLQQL 31 (91)
Q Consensus 16 isddqi~dLvsKLQaL 31 (91)
+||+||.+|+.-|..|
T Consensus 84 ~s~~di~~l~aYl~sl 99 (100)
T 1qn2_A 84 SDPKKVDDIIAYLKTK 99 (100)
T ss_dssp CCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhc
Confidence 4799999999888764
No 98
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=29.50 E-value=32 Score=20.76 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHHHHh
Q 048534 15 RITDDQINDLVSKLQQL 31 (91)
Q Consensus 15 ~isddqi~dLvsKLQaL 31 (91)
.+||+||.+|+.-|..|
T Consensus 96 ~ls~~ei~~l~aYl~sl 112 (114)
T 2w9k_A 96 MKKPQERADVIAYLETL 112 (114)
T ss_dssp CCCHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 47899999999888764
No 99
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=29.27 E-value=54 Score=19.50 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 048534 18 DDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIRSLHREVDDLS 67 (91)
Q Consensus 18 ddqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr~LhrEVddLS 67 (91)
++...+|=..+.+| ..+| . --+..|+++=.-|..|..|||+|+
T Consensus 8 ~~r~~~l~~~l~~L----~~rN-~--rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSL----AARN-S--KLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHH----HHHH-H--HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH----HHHH-H--HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666665555443 2222 1 235678999999999999999985
No 100
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=28.88 E-value=38 Score=21.21 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHHhc
Q 048534 16 ITDDQINDLVSKLQQLL 32 (91)
Q Consensus 16 isddqi~dLvsKLQaLL 32 (91)
+||+||.+|+.-|+.+=
T Consensus 117 Ls~~ei~~l~ayl~~l~ 133 (146)
T 3o0r_C 117 LSEGQVDDLAEFLKWSS 133 (146)
T ss_dssp CCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 89999999999998753
No 101
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=28.26 E-value=58 Score=19.43 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 048534 54 NYIRSLHREVDDLSERLSELLATT 77 (91)
Q Consensus 54 ~YIr~LhrEVddLSeRLs~Ll~s~ 77 (91)
.||..|+..|+.|-..|.++-...
T Consensus 48 ~~~~~Le~rl~~le~~l~~~~~~~ 71 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEYGVDP 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCc
Confidence 489999999999999888875443
No 102
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Probab=27.51 E-value=42 Score=19.50 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=13.7
Q ss_pred CCC-HHHHHHHHHHHHHh
Q 048534 15 RIT-DDQINDLVSKLQQL 31 (91)
Q Consensus 15 ~is-ddqi~dLvsKLQaL 31 (91)
.++ |+||.+|+.-|..|
T Consensus 84 ~l~~~~ei~~l~aYl~sl 101 (103)
T 1i54_A 84 GIKKKGERQDLVAYLKSA 101 (103)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 464 99999999988765
No 103
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=27.43 E-value=46 Score=21.63 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHHHHHhchhhh
Q 048534 14 SRITDDQINDLVSKLQQLLPELR 36 (91)
Q Consensus 14 s~isddqi~dLvsKLQaLLPe~~ 36 (91)
+.++|+|+..++.|++.++-+.+
T Consensus 54 P~l~ee~~~~~ve~~~~iI~~~g 76 (96)
T 2kjw_A 54 PNLDQSQLALEKEIIQRALENYG 76 (96)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHhCC
Confidence 56899999999999999987653
No 104
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=27.43 E-value=42 Score=21.72 Aligned_cols=17 Identities=18% Similarity=0.470 Sum_probs=14.9
Q ss_pred CCCCCHHHHHHHHHHHH
Q 048534 13 SSRITDDQINDLVSKLQ 29 (91)
Q Consensus 13 ~s~isddqi~dLvsKLQ 29 (91)
..+|||+++.+|+.++.
T Consensus 51 ~~ki~e~~L~~lL~~i~ 67 (81)
T 2fh0_A 51 THKITEAEIVSILNGIA 67 (81)
T ss_dssp SCCBCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHh
Confidence 47899999999998884
No 105
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=27.42 E-value=47 Score=20.68 Aligned_cols=19 Identities=5% Similarity=0.141 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHHhch
Q 048534 15 RITDDQINDLVSKLQQLLP 33 (91)
Q Consensus 15 ~isddqi~dLvsKLQaLLP 33 (91)
.+||+||.+|+.-|..+=+
T Consensus 106 ~Lsd~ei~alaaYl~~~~~ 124 (137)
T 1mz4_A 106 NLTEKDLVAIAGHILVEPK 124 (137)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccc
Confidence 4999999999999887643
No 106
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=26.88 E-value=49 Score=20.97 Aligned_cols=18 Identities=6% Similarity=0.270 Sum_probs=15.1
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 048534 13 SSRITDDQINDLVSKLQQ 30 (91)
Q Consensus 13 ~s~isddqi~dLvsKLQa 30 (91)
.+++|++||.+.+..+|+
T Consensus 69 ~~~ls~eei~~~l~~~~~ 86 (88)
T 3b09_A 69 ESAVSMEELQVAFTEISR 86 (88)
T ss_dssp CCSSCHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 457999999999988874
No 107
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Probab=26.81 E-value=46 Score=19.65 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHh
Q 048534 17 TDDQINDLVSKLQQL 31 (91)
Q Consensus 17 sddqi~dLvsKLQaL 31 (91)
||+||.+|+.-|..|
T Consensus 92 s~~ei~~l~aYl~sl 106 (108)
T 1ycc_A 92 KEKDRNDLITYLKKA 106 (108)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 799999999988765
No 108
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Probab=26.41 E-value=49 Score=21.07 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 048534 14 SRITDDQINDLVSKLQQL 31 (91)
Q Consensus 14 s~isddqi~dLvsKLQaL 31 (91)
..+||+||.+|+.-|..+
T Consensus 106 ~~ls~~ei~~l~~Yl~~l 123 (147)
T 2gc4_D 106 GSLTLDEMLRTMAWVRHL 123 (147)
T ss_dssp TTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 469999999999999987
No 109
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=26.33 E-value=67 Score=17.30 Aligned_cols=18 Identities=28% Similarity=0.602 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048534 47 KVLQETCNYIRSLHREVD 64 (91)
Q Consensus 47 kvLqETC~YIr~LhrEVd 64 (91)
.+|=|+-+|+.+..||..
T Consensus 6 q~LLeAAeyLErrEre~E 23 (26)
T 1pd7_B 6 QMLLEAADYLERREREAE 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 478899999999988753
No 110
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=25.28 E-value=60 Score=22.63 Aligned_cols=19 Identities=5% Similarity=0.309 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHHhchh
Q 048534 16 ITDDQINDLVSKLQQLLPE 34 (91)
Q Consensus 16 isddqi~dLvsKLQaLLPe 34 (91)
+|++||..++..|...|-+
T Consensus 370 ~~~~~i~~~~~~l~~~l~~ 388 (417)
T 3n0l_A 370 FKEKEMEIVSNYIADILDD 388 (417)
T ss_dssp CCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 7899999999999988743
No 111
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=25.23 E-value=87 Score=19.70 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=7.5
Q ss_pred HHHHHHHhhccCh
Q 048534 67 SERLSELLATTDT 79 (91)
Q Consensus 67 SeRLs~Ll~s~D~ 79 (91)
.|+|..|-+-.|.
T Consensus 32 gekL~~L~~kt~~ 44 (91)
T 3hd7_A 32 DQKLSELDDRADA 44 (91)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH
Confidence 5666666655554
No 112
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=25.18 E-value=94 Score=19.85 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCh
Q 048534 54 NYIRSLHREVDDLSERLSELLATTDT 79 (91)
Q Consensus 54 ~YIr~LhrEVddLSeRLs~Ll~s~D~ 79 (91)
.||..|.+.||++.--=+.|..-+|.
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999888888777776
No 113
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=24.72 E-value=52 Score=21.26 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=15.1
Q ss_pred CCCCCCCHHHHHHHHHHHH
Q 048534 11 SGSSRITDDQINDLVSKLQ 29 (91)
Q Consensus 11 ~~~s~isddqi~dLvsKLQ 29 (91)
++..++|++||.+++..|.
T Consensus 5 ~~~~~Ls~~ei~~~L~~l~ 23 (105)
T 1ru0_A 5 SDAQWLTAEERDQLIPGLK 23 (105)
T ss_dssp -CCSBCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHhCC
Confidence 3567899999999987764
No 114
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=24.67 E-value=34 Score=22.59 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhhccCh--hHHHHHHHH
Q 048534 60 HREVDDLSERLSELLATTDT--AQAAIIRSL 88 (91)
Q Consensus 60 hrEVddLSeRLs~Ll~s~D~--~~a~iiRsL 88 (91)
+.|||-|-|++.+|++.+.. .+-.++|.+
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999987765 555666655
No 115
>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*
Probab=24.56 E-value=49 Score=19.64 Aligned_cols=17 Identities=18% Similarity=0.514 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHHhch
Q 048534 17 TDDQINDLVSKLQQLLP 33 (91)
Q Consensus 17 sddqi~dLvsKLQaLLP 33 (91)
||+||.+|+.-|..+=+
T Consensus 86 s~~ei~~l~aYl~sl~~ 102 (107)
T 1co6_A 86 DEQKVSDLIAYIKQFNA 102 (107)
T ss_dssp CHHHHHHHHHHHHTBCT
T ss_pred CHHHHHHHHHHHHHccc
Confidence 79999999999987644
No 116
>2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A
Probab=24.51 E-value=33 Score=19.54 Aligned_cols=13 Identities=23% Similarity=0.639 Sum_probs=11.2
Q ss_pred HHHHHHHHhchhh
Q 048534 23 DLVSKLQQLLPEL 35 (91)
Q Consensus 23 dLvsKLQaLLPe~ 35 (91)
-||+++|+.+|.-
T Consensus 6 tlikriq~vIPk~ 18 (34)
T 2dwf_A 6 ALIKRIQAMIPKG 18 (34)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhhcCCc
Confidence 4899999999965
No 117
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=24.46 E-value=86 Score=17.70 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=12.8
Q ss_pred CCCCHHHHHHHHHHHHH
Q 048534 14 SRITDDQINDLVSKLQQ 30 (91)
Q Consensus 14 s~isddqi~dLvsKLQa 30 (91)
..||.+|+..|-...+.
T Consensus 8 t~ft~~q~~~Le~~F~~ 24 (66)
T 1bw5_A 8 TVLNEKQLHTLRTCYAA 24 (66)
T ss_dssp CCCSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 44999999988766553
No 118
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.19 E-value=85 Score=18.32 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 048534 54 NYIRSLHREVDDLSERLSELLATT 77 (91)
Q Consensus 54 ~YIr~LhrEVddLSeRLs~Ll~s~ 77 (91)
-|+..|..+|..|..--..|...+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688889999988888777766544
No 119
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=24.11 E-value=42 Score=20.99 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHhchhh
Q 048534 20 QINDLVSKLQQLLPEL 35 (91)
Q Consensus 20 qi~dLvsKLQaLLPe~ 35 (91)
+|..-|.+|...+-++
T Consensus 16 ~I~~~i~~i~~~v~~l 31 (127)
T 1ez3_A 16 EIRGFIDKIAENVEEV 31 (127)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555555554
No 120
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=23.96 E-value=46 Score=22.68 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHHhchhhh
Q 048534 15 RITDDQINDLVSKLQQLLPELR 36 (91)
Q Consensus 15 ~isddqi~dLvsKLQaLLPe~~ 36 (91)
..|+++|.+++..|..++-+++
T Consensus 356 ~~~~~~i~~~~~~l~~~~~~~~ 377 (384)
T 1eg5_A 356 YNTEEEVDYFLKKIEEILSFLD 377 (384)
T ss_dssp TCCHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999987774
No 121
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=23.89 E-value=27 Score=20.33 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 048534 55 YIRSLHREVDDLSERL 70 (91)
Q Consensus 55 YIr~LhrEVddLSeRL 70 (91)
||..|+..|+.|-+.|
T Consensus 59 ~~~~L~~ri~~LE~~l 74 (81)
T 1hwt_C 59 ELKKLRERVKSLEKTL 74 (81)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555444444333
No 122
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=23.80 E-value=1e+02 Score=20.08 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 048534 51 ETCNYIRSLHREVDDLSERLSELLA 75 (91)
Q Consensus 51 ETC~YIr~LhrEVddLSeRLs~Ll~ 75 (91)
++|+=+..|..++|.+=..|-+||+
T Consensus 9 ~~~~~L~~lR~~ID~ID~~il~LL~ 33 (114)
T 3rmi_A 9 KILSELAYLRQSIDNFDITLIHILA 33 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888888887777777765
No 123
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=23.45 E-value=1.1e+02 Score=18.20 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHH
Q 048534 49 LQETCNYIRSLH---REVDDLSERLS 71 (91)
Q Consensus 49 LqETC~YIr~Lh---rEVddLSeRLs 71 (91)
.+|--|||..|. .|+.+|-|.|-
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 567789998875 47777777764
No 124
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.23 E-value=1e+02 Score=19.08 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048534 50 QETCNYIRSLHREVDDLSERLSELLA 75 (91)
Q Consensus 50 qETC~YIr~LhrEVddLSeRLs~Ll~ 75 (91)
+-.=.||+.|..+|.+|......|..
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~ 50 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTL 50 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557999999999998876666543
No 125
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=23.03 E-value=83 Score=16.83 Aligned_cols=17 Identities=35% Similarity=0.716 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048534 49 LQETCNYIRSLHREVDD 65 (91)
Q Consensus 49 LqETC~YIr~LhrEVdd 65 (91)
|-|+-.|+..|||.+.+
T Consensus 6 liearkyleqlhrklkn 22 (26)
T 1xkm_B 6 LIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 56888999999998754
No 126
>3dby_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.10A {Bacillus cereus} SCOP: a.29.13.1 a.29.13.1
Probab=23.02 E-value=40 Score=25.79 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 048534 44 SAGKVLQETCNYIRSLHR 61 (91)
Q Consensus 44 SaskvLqETC~YIr~Lhr 61 (91)
=|--|+-|+|-|++.|..
T Consensus 232 laDH~~REa~yyL~~L~~ 249 (269)
T 3dby_A 232 MADHMAREECYYLLKLAQ 249 (269)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 567899999999998864
No 127
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=22.89 E-value=53 Score=22.46 Aligned_cols=17 Identities=12% Similarity=0.489 Sum_probs=15.1
Q ss_pred CCCCCHHHHHHHHHHHH
Q 048534 13 SSRITDDQINDLVSKLQ 29 (91)
Q Consensus 13 ~s~isddqi~dLvsKLQ 29 (91)
..+|||+++.+|+.++.
T Consensus 83 ~~kItee~Lk~lL~~i~ 99 (118)
T 2cru_A 83 SEKVSEQGLIEILKKVS 99 (118)
T ss_dssp CSCBCHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 47899999999999885
No 128
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.67 E-value=1.3e+02 Score=17.97 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=30.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048534 41 DKVSAGKVLQETCNYIRSLHREVDDLSERLSELLATT 77 (91)
Q Consensus 41 ~~~SaskvLqETC~YIr~LhrEVddLSeRLs~Ll~s~ 77 (91)
.+.||.+.=+--=.||..|+.+|..|...-++|...+
T Consensus 17 NreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 17 NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677877777777899999999999998888876643
No 129
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Probab=22.27 E-value=42 Score=21.70 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=13.8
Q ss_pred CCCCCCHHHHHHHHHHH
Q 048534 12 GSSRITDDQINDLVSKL 28 (91)
Q Consensus 12 ~~s~isddqi~dLvsKL 28 (91)
+..++|++||.+++..|
T Consensus 4 ~~~~Ls~~ei~~~L~~L 20 (104)
T 3hxa_A 4 KAHRLSAEERDQLLPNL 20 (104)
T ss_dssp -CCCCCHHHHHHHSHHH
T ss_pred CCccCCHHHHHHHHhhC
Confidence 56789999999988765
No 130
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=21.96 E-value=67 Score=20.80 Aligned_cols=19 Identities=5% Similarity=0.141 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHHhch
Q 048534 15 RITDDQINDLVSKLQQLLP 33 (91)
Q Consensus 15 ~isddqi~dLvsKLQaLLP 33 (91)
.+||+||.+|+.-|..+=+
T Consensus 132 ~Lsd~ei~~laaYl~sl~~ 150 (163)
T 1w5c_T 132 NLTEKDLVAIAGHILVEPK 150 (163)
T ss_dssp TCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccc
Confidence 6899999999998877643
No 131
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=21.75 E-value=92 Score=17.26 Aligned_cols=18 Identities=28% Similarity=0.411 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhchhh
Q 048534 18 DDQINDLVSKLQQLLPEL 35 (91)
Q Consensus 18 ddqi~dLvsKLQaLLPe~ 35 (91)
.+||.+|...+..+.-.+
T Consensus 36 ~dEi~~l~~~~n~m~~~l 53 (114)
T 3zcc_A 36 ADEIGILAKSIERLRRSL 53 (114)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 567766666655555444
No 132
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=21.41 E-value=2.7e+02 Score=21.16 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHHhchhhhhccCCcchHHHHHHHHHHHHH
Q 048534 15 RITDDQINDLVSKLQQLLPELRNNRSDKVSAGKVLQETCNYIR 57 (91)
Q Consensus 15 ~isddqi~dLvsKLQaLLPe~~~r~~~~~SaskvLqETC~YIr 57 (91)
.|+|+-+..++..-...++. +.-.-.|-.+|.++|.+.+
T Consensus 348 ~i~~~al~~l~~~s~~~~~~----~~lp~~ai~ll~~a~~~~~ 386 (468)
T 3pxg_A 348 SITDDAIEAAVKLSDRYISD----RFLPDKAIDLIDEAGSKVR 386 (468)
T ss_dssp SCCHHHHHHHHHHHHHSSCC----SCTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcc----CcCCcHHHHHHHHHHHHHH
Confidence 35565555555444433332 1112357788999998543
No 133
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=21.38 E-value=87 Score=20.16 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048534 47 KVLQETCNYIRSLHREVDDLSERLSEL 73 (91)
Q Consensus 47 kvLqETC~YIr~LhrEVddLSeRLs~L 73 (91)
+.-+.+-+||+.=|+|+..+-..+.+|
T Consensus 7 ~~a~~~l~~i~eR~~eI~~Ie~~I~eL 33 (109)
T 3hd7_B 7 SISKQALSEIETRHSEIIKLENSIREL 33 (109)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777888888877777766654
No 134
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=21.36 E-value=85 Score=17.64 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHHHHH
Q 048534 14 SRITDDQINDLVSKLQ 29 (91)
Q Consensus 14 s~isddqi~dLvsKLQ 29 (91)
..||.+|+..|-...+
T Consensus 8 t~ft~~Q~~~Le~~F~ 23 (63)
T 2h1k_A 8 TAYTRAQLLELEKEFL 23 (63)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHh
Confidence 4599999998876654
No 135
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=21.19 E-value=72 Score=19.14 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHhchhh
Q 048534 15 RITDDQINDLVSKLQQLLPEL 35 (91)
Q Consensus 15 ~isddqi~dLvsKLQaLLPe~ 35 (91)
-||.+++..|-|.||+|=..+
T Consensus 16 gfspeelaaleselqalekkl 36 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKL 36 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 378888888888888875433
No 136
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=21.11 E-value=2.1e+02 Score=19.63 Aligned_cols=20 Identities=35% Similarity=0.458 Sum_probs=16.8
Q ss_pred CCCCCCCHHHHHHHHHHHHH
Q 048534 11 SGSSRITDDQINDLVSKLQQ 30 (91)
Q Consensus 11 ~~~s~isddqi~dLvsKLQa 30 (91)
.++.+.++.||++|--+|.+
T Consensus 16 ~~~~~~~~~ei~~L~~~L~~ 35 (110)
T 2v4h_A 16 PRGSHMASMQLEDLRQQLQQ 35 (110)
T ss_dssp CTTCCSSCCHHHHHHHHHHH
T ss_pred cchhHhhHHHHHHHHHHHHH
Confidence 35678899999999999875
No 137
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=20.92 E-value=51 Score=19.42 Aligned_cols=16 Identities=44% Similarity=0.466 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHhc
Q 048534 17 TDDQINDLVSKLQQLL 32 (91)
Q Consensus 17 sddqi~dLvsKLQaLL 32 (91)
++++|++|=.||..|-
T Consensus 21 te~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 21 VEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5789999999988774
No 138
>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1
Probab=20.90 E-value=42 Score=19.83 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHh
Q 048534 17 TDDQINDLVSKLQQL 31 (91)
Q Consensus 17 sddqi~dLvsKLQaL 31 (91)
||+||.+|+.-|..|
T Consensus 91 ~~~ei~~l~aYl~sl 105 (106)
T 1hro_A 91 DPQKRADIIAYLETL 105 (106)
T ss_dssp CHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhc
Confidence 699999999887654
No 139
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=20.80 E-value=69 Score=21.88 Aligned_cols=17 Identities=18% Similarity=0.470 Sum_probs=14.6
Q ss_pred CCCCCHHHHHHHHHHHH
Q 048534 13 SSRITDDQINDLVSKLQ 29 (91)
Q Consensus 13 ~s~isddqi~dLvsKLQ 29 (91)
..+|||+++.+|+.++.
T Consensus 86 ~~ki~e~~L~~lL~~i~ 102 (116)
T 2hvu_A 86 THKITEAEIVSILNGIA 102 (116)
T ss_dssp SSCBCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHh
Confidence 47899999999988775
No 140
>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans}
Probab=20.48 E-value=73 Score=21.10 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHHHHhch
Q 048534 14 SRITDDQINDLVSKLQQLLP 33 (91)
Q Consensus 14 s~isddqi~dLvsKLQaLLP 33 (91)
..+||+||.+|+.-|..+-+
T Consensus 108 ~~Ls~~ei~~l~aYl~sl~~ 127 (170)
T 2d0w_A 108 QDLELDNMLKLIAWIRHIQK 127 (170)
T ss_dssp TTSCHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHccc
Confidence 46999999999999998753
Done!