BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048536
(267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54YW1|ELMOA_DICDI ELMO domain-containing protein A OS=Dictyostelium discoideum
GN=elmoA PE=1 SV=1
Length = 977
Score = 112 bits (280), Expect = 3e-24, Method: Composition-based stats.
Identities = 60/195 (30%), Positives = 94/195 (48%), Gaps = 21/195 (10%)
Query: 69 QEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPST 128
Q R Q + R F++ +H A L LW +P V L +SEQWK MG+QG +P T
Sbjct: 362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCT 421
Query: 129 DFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLF 188
DFR G L+NL++ A+NY F++++ Q +R EYP A AGI ++F L +
Sbjct: 422 DFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQ-IDRKEREYPTATAGIVLTFELYNSIFKM 480
Query: 189 SEKPRCLP-------------------GMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAM 229
P P + F + AF+ +YC F+++D+ W M
Sbjct: 481 G-TPNLNPYNSTTSNTTSNTTSTTNIDDLPFFPLFFSHPHAFEEVYCTTFQILDSTWDDM 539
Query: 230 HASYMEFNEVLKVTR 244
+ +YM F +++ +
Sbjct: 540 NGTYMHFQKIMSSVK 554
>sp|Q54UP9|ELMOD_DICDI Ankyrin repeat and ELMO domain-containing protein D
OS=Dictyostelium discoideum GN=elmoD PE=4 SV=1
Length = 1267
Score = 94.4 bits (233), Expect = 7e-19, Method: Composition-based stats.
Identities = 57/176 (32%), Positives = 92/176 (52%), Gaps = 8/176 (4%)
Query: 69 QEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPST 128
Q ++Q L +TP+++ P HQ L LW FPN V E W+ +G+Q +PS+
Sbjct: 286 QCHKIQGLIMDSKTPYNKDEPSHQRLLETLWSTLFPNQVFQ-RSHENWQIIGFQNKDPSS 344
Query: 129 DFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFML---IKML 185
DFRG G L++L++LA+N+ F L + A + YP+A +GI V+ L +K +
Sbjct: 345 DFRGMGLAGLKHLIYLAQNHKDMFMNPLINR-QPEANY-YPYATSGIQVTSFLVECVKPI 402
Query: 186 DLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLK 241
++ + + IL E E A + +YCV E+ W +A+YM F +V +
Sbjct: 403 NISANHSDVIG--QIYPILFESENALNEIYCVLMEIFGIVWKDWNATYMIFQKVFQ 456
>sp|Q54RS7|ELMOC_DICDI ELMO domain-containing protein C OS=Dictyostelium discoideum
GN=elmoC PE=4 SV=1
Length = 618
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 18/193 (9%)
Query: 65 LTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGP 124
+T Q + ++ L ++ T ++ + PDH+ L+ LW +P S WK G+Q
Sbjct: 357 VTAKQSQTIKILFQKKSTIYESTNPDHEEYLKHLWSLLYPEQEFQKK-SPLWKKFGFQSD 415
Query: 125 NPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKM 184
+P+ DFRG G + L NL+ L +++ Q +L + +YPFAVAGIN+S ++ ++
Sbjct: 416 DPTRDFRGMGIMGLLNLIHLVQHHNDWVQEILAQDR------DYPFAVAGINISNLIFEV 469
Query: 185 LDLFSEKPRCLPGMN----------FVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYM 234
+ SE P + + ++ AF+ LY + F ++D W+ M+A+YM
Sbjct: 470 FQI-SEDSLQQPWYSSFWSSSYMAMLCSMSRHNDHAFEELYFLIFNLLDHLWIQMNATYM 528
Query: 235 EFNEVLKVTRRQL 247
F V+K + QL
Sbjct: 529 MFPLVIKKLKSQL 541
>sp|Q54VR8|ELMOB_DICDI ELMO domain-containing protein B OS=Dictyostelium discoideum
GN=elmoB PE=4 SV=1
Length = 284
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 106/190 (55%), Gaps = 16/190 (8%)
Query: 74 QRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGC 133
+ ++++ + P+D + +H+A+L LW P+V + +S++W +G+QG +P+TDFRG
Sbjct: 108 KSIEKKQKIPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGM 167
Query: 134 GFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPR 193
G + L+NL++ + + + +L K ++ YPFA+ GIN++ +++ ++D KP
Sbjct: 168 GILGLDNLIYFSTQHSEDAREIL-KNSNSKCC--YPFAITGINITALVLNLID----KPH 220
Query: 194 CLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMH-ASYMEFNEVLKVTRRQLERELS 252
+ F + G F+ LY + F D + + S MEFN + +++ E ++S
Sbjct: 221 F--KIYFFKN-GSTLTQFNELYSLVFISFDRFYQSKKPKSIMEFNTI----KKEFETKIS 273
Query: 253 LEDIDRIQDL 262
++ D +Q L
Sbjct: 274 -QNSDLVQLL 282
>sp|Q8BGF6|ELMD2_MOUSE ELMO domain-containing protein 2 OS=Mus musculus GN=Elmod2 PE=2
SV=1
Length = 293
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Query: 81 QTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLEN 140
+ P+D + H+ L LW P L IS+QW D+G+QG +P TDFRG G + L N
Sbjct: 117 KKPYDSANAQHEKMLLKLWSLLMPTKKLTARISKQWADIGFQGDDPKTDFRGMGILGLIN 176
Query: 141 LLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNF 200
L++ ++NY + ++L + N Y +A+ GIN++ M +L SE + L NF
Sbjct: 177 LVYFSENYTSEAHQILSR--SNHPKLGYSYAIVGINLTEMAYSLLK--SEALK-LHLYNF 231
Query: 201 VRILGEDEAAFDVLYCVAFEMMDAQWL 227
V + E F YC D WL
Sbjct: 232 VPGVPTME-HFHQFYCYLVYEFDKFWL 257
>sp|Q8IZ81|ELMD2_HUMAN ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1
SV=1
Length = 293
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 83 PFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLL 142
P+D H+ L LW P LN IS+QW ++G+QG +P TDFRG G + L NL+
Sbjct: 119 PYDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLV 178
Query: 143 FLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKML 185
+ ++NY + ++L + N Y +A+ GIN++ M +L
Sbjct: 179 YFSENYTSEAHQILSR--SNHPKLGYSYAIVGINLTEMAYSLL 219
>sp|Q08DZ3|ELMD2_BOVIN ELMO domain-containing protein 2 OS=Bos taurus GN=ELMOD2 PE=1 SV=1
Length = 293
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 81 QTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLEN 140
+ P+D H+ L LW P L IS+QW D+G+QG +P TDFRG G + L N
Sbjct: 117 KKPYDSDNLQHEKLLIKLWNLLMPTKKLKARISKQWADIGFQGDDPKTDFRGMGILGLIN 176
Query: 141 LLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKML 185
L++ ++NY + ++L + N Y +A+ GIN++ M +L
Sbjct: 177 LVYFSENYTSEAHQILSR--SNHPKLGYSYAIVGINLTEMAYSLL 219
>sp|Q96BJ8|ELMO3_HUMAN Engulfment and cell motility protein 3 OS=Homo sapiens GN=ELMO3
PE=2 SV=3
Length = 720
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 106/208 (50%), Gaps = 21/208 (10%)
Query: 63 YHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAF------PNVVLNG-----M 111
+HL Q L L+ R++TP D + + L+ L + AF L+ +
Sbjct: 280 HHLYVLQALMLGLLEPRMRTPLDPYSQEQREQLQVLRQAAFEVEGESSGAGLSADRRRSL 339
Query: 112 ISEQWKDMGWQGPNPSTDFRGC--GFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYP 169
+ +++ +G+ NP+ D G ++L+N+L+ ++N P+++ R + + E P
Sbjct: 340 CAREFRKLGFSNSNPAQDLERVPPGLLALDNMLYFSRNAPSAYSRFVLENSSREDKHECP 399
Query: 170 FAVAGINVSFMLIKMLDL---FSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQW 226
FA I ++ +L ++L + SE + M F G+D+ +F L+CV ++++ W
Sbjct: 400 FARGSIQLTVLLCELLRVGEPCSETAQDFSPMFF----GQDQ-SFHELFCVGIQLLNKTW 454
Query: 227 LAMHASYMEFNEVLKVTRRQLERELSLE 254
M A+ +F++V++V R QL R L+L+
Sbjct: 455 KEMRATQEDFDKVMQVVREQLARTLALK 482
>sp|Q8BYZ7|ELMO3_MOUSE Engulfment and cell motility protein 3 OS=Mus musculus GN=Elmo3
PE=1 SV=2
Length = 720
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 106/205 (51%), Gaps = 15/205 (7%)
Query: 63 YHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFP---NVVLNGMISE----- 114
+HL Q L L+ R++TP D + + L+ L + AF + G+ ++
Sbjct: 280 HHLYVLQALTLGLLEPRMRTPLDPYSQEQRDQLQALRQAAFEPEGESLGTGLSADRRRSL 339
Query: 115 ---QWKDMGWQGPNPSTDFRGC--GFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYP 169
+++ +G+ NP+ D G ++L+N+L+ +++ P+++ R + + E P
Sbjct: 340 CVREFRKLGFSNSNPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECP 399
Query: 170 FAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAM 229
FA + I ++ +L ++L + +P +F + + +F L+CVA ++++ W M
Sbjct: 400 FARSSIQLTALLCELLRV--GEPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEM 457
Query: 230 HASYMEFNEVLKVTRRQLERELSLE 254
A+ +F++V++V R QL R L+L+
Sbjct: 458 RATQEDFDKVMQVVREQLARTLALK 482
>sp|Q499U2|ELMO3_RAT Engulfment and cell motility protein 3 OS=Rattus norvegicus
GN=Elmo3 PE=2 SV=1
Length = 720
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 105/205 (51%), Gaps = 15/205 (7%)
Query: 63 YHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAF-PNVVLNG----------M 111
+HL Q L L+ R++TP D + + L+ L + AF P+ G +
Sbjct: 280 HHLYVLQALTLGLLEPRMRTPLDPYSQEQREQLQALRQAAFEPDGESLGTGLSADRRRSL 339
Query: 112 ISEQWKDMGWQGPNPSTDFRGC--GFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYP 169
+++ +G+ +P+ D G ++L+N+L+ +++ P+++ R + + E P
Sbjct: 340 CVREFRKLGFSNSSPAQDLERVPPGLLALDNMLYFSRHAPSAYSRFVLENSSREDKHECP 399
Query: 170 FAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAM 229
FA + I ++ +L ++L + +P +F + + +F L+CVA ++++ W M
Sbjct: 400 FARSSIQLTVLLCELLHV--GEPCSETAQDFSPMFFSQDHSFHELFCVAIQLLNKTWKEM 457
Query: 230 HASYMEFNEVLKVTRRQLERELSLE 254
A+ +F++V++V R QL R L+L+
Sbjct: 458 RATQEDFDKVMQVVREQLARTLALK 482
>sp|A6QR40|ELMO3_BOVIN Engulfment and cell motility protein 3 OS=Bos taurus GN=ELMO3 PE=2
SV=1
Length = 652
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 106/208 (50%), Gaps = 21/208 (10%)
Query: 63 YHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAF-PNVVLNG----------M 111
+HL Q L L+ R++TP D + + L+ L + AF P G +
Sbjct: 280 HHLYVLQALMLGLLEPRMRTPLDPYSQEQREQLQALRQAAFEPEGESVGAGLSADRRRSL 339
Query: 112 ISEQWKDMGWQGPNPSTDFRGC--GFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYP 169
+ +++ +G+ NP+ D G ++L+N+L+ ++ P+++ R + + E P
Sbjct: 340 CAREFRKLGFSNSNPAQDLERVPPGLLALDNMLYFSRQAPSAYSRFVLENSSREDKHECP 399
Query: 170 FAVAGINVSFMLIKMLDL---FSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQW 226
FA + I ++ +L +L + SE + M F G+D+ +F L+CV+ ++++ W
Sbjct: 400 FARSSIQLTVLLCDLLHVGEPCSETAQDFSPMFF----GQDQ-SFHELFCVSIQLLNKTW 454
Query: 227 LAMHASYMEFNEVLKVTRRQLERELSLE 254
M A+ +F++V++V R QL R L+L+
Sbjct: 455 KEMRATQEDFDKVMQVVREQLARTLALK 482
>sp|Q5NVD7|ELMD1_PONAB ELMO domain-containing protein 1 OS=Pongo abelii GN=ELMOD1 PE=2
SV=1
Length = 326
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 89/192 (46%), Gaps = 24/192 (12%)
Query: 83 PFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLL 142
P+D P H+ L LW+F PN L IS+QW ++G+QG +P TDFRG G + L NL
Sbjct: 126 PYDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQ 185
Query: 143 FLAKNYPASFQRLLFK------QGGNRATWE---------YPFAVAGINVSFMLIKMLDL 187
+ A+ + Q++L ++A WE Y FA+ GIN++ + +L
Sbjct: 186 YFAERDATAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVS 245
Query: 188 FSEKPRCLPGMNFVRILGEDE--AAFDVLYCVAFEMMDAQWLAMH-ASYMEFNEVLKVTR 244
+ K +F I E + F +C W+ MEFN V + R
Sbjct: 246 GALK------THFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFR 299
Query: 245 RQLERELSLEDI 256
+++ ++L D+
Sbjct: 300 KRIIKQLQNPDM 311
>sp|Q0IIE6|ELMD1_BOVIN ELMO domain-containing protein 1 OS=Bos taurus GN=ELMOD1 PE=2 SV=1
Length = 326
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 24/191 (12%)
Query: 84 FDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLF 143
+D P H+ L LW+F PN L IS+QW ++G+QG +P TDFRG G + L NL +
Sbjct: 127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQY 186
Query: 144 LAKNYPASFQRLLFK------QGGNRATWE---------YPFAVAGINVSFMLIKMLDLF 188
A+ A+ Q++L ++A WE Y FA+ GIN++ + +L
Sbjct: 187 FAERDAAAAQQVLSDSLHPKCSKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSG 246
Query: 189 SEKPRCLPGMNFVRILGEDE--AAFDVLYCVAFEMMDAQWLAMH-ASYMEFNEVLKVTRR 245
+ K +F I E + F +C W+ MEFN V + R+
Sbjct: 247 ALK------THFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRK 300
Query: 246 QLERELSLEDI 256
++ ++L D+
Sbjct: 301 RIIKQLQNPDM 311
>sp|Q8N336|ELMD1_HUMAN ELMO domain-containing protein 1 OS=Homo sapiens GN=ELMOD1 PE=2
SV=3
Length = 334
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 88/199 (44%), Gaps = 32/199 (16%)
Query: 84 FDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLF 143
+D P H+ L LW+F PN L IS+QW ++G+QG +P TDFRG G + L NL +
Sbjct: 127 YDSDNPQHEEMLLKLWKFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQY 186
Query: 144 LAKNYPASFQRLLFK--------------QGGNRATWE---------YPFAVAGINVSFM 180
A+ + Q++L ++A WE Y FA+ GIN++ +
Sbjct: 187 FAERDATAAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITDL 246
Query: 181 LIKMLDLFSEKPRCLPGMNFVRILGEDE--AAFDVLYCVAFEMMDAQWLAMH-ASYMEFN 237
+L + K +F I E + F +C W+ MEFN
Sbjct: 247 AYNLLVSGALK------THFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFN 300
Query: 238 EVLKVTRRQLERELSLEDI 256
V + R+++ ++L D+
Sbjct: 301 RVREKFRKRIIKQLQNPDM 319
>sp|Q3V1U8|ELMD1_MOUSE ELMO domain-containing protein 1 OS=Mus musculus GN=Elmod1 PE=2
SV=2
Length = 326
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 24/192 (12%)
Query: 83 PFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLL 142
P+D P H+ L LW PN L +S+QW ++G+QG +P TDFRG G + L NL
Sbjct: 126 PYDSDNPQHEEMLLKLWELLKPNTPLESRVSKQWCEIGFQGDDPKTDFRGMGLLGLYNLQ 185
Query: 143 FLAKNYPASFQRLLFKQGGNRAT------WE---------YPFAVAGINVSFMLIKMLDL 187
+ A+ Q++L + + WE Y FA+ GIN++ + +L
Sbjct: 186 YFAERDATVAQQVLSDSVHPKCSKFSKIEWEKKKMDKAIGYSFAIVGINITDLAYNLLVS 245
Query: 188 FSEKPRCLPGMNFVRILGEDE--AAFDVLYCVAFEMMDAQWLAMH-ASYMEFNEVLKVTR 244
+ K +F I E + F +C W+ MEFN V + R
Sbjct: 246 GALK------THFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFR 299
Query: 245 RQLERELSLEDI 256
+++ ++L D+
Sbjct: 300 KRIIKQLQNPDM 311
>sp|Q8BHL5|ELMO2_MOUSE Engulfment and cell motility protein 2 OS=Mus musculus GN=Elmo2
PE=1 SV=1
Length = 732
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 98/192 (51%), Gaps = 19/192 (9%)
Query: 76 LQERLQTPFDESRPDHQAALRDLWRFAF------PNVVLNG------MISEQWKDMGWQG 123
L+ER+ T D + + + +L R AF NV +G M ++ +K +G+
Sbjct: 309 LEERMMTKMDPNDQAQRDIIFELRRIAFDAESDPSNVPGSGTEKRKAMYTKDYKMLGFTN 368
Query: 124 P-NPSTDFRGC--GFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFM 180
NP+ DF G ++L+N+L+LAK + ++ R++ + E PF + I ++ M
Sbjct: 369 HINPALDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKHECPFGRSAIELTKM 428
Query: 181 LIKMLDLFSEKPRCLPGMN-FVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEV 239
L ++L + E P G N + + + AF+ L+ + ++++ W M A+ +FN+V
Sbjct: 429 LCEILQV-GELPN--EGRNDYHPMFFTHDRAFEELFGICIQLLNKTWKEMRATAEDFNKV 485
Query: 240 LKVTRRQLEREL 251
++V R Q+ R L
Sbjct: 486 MQVVREQITRAL 497
>sp|Q8BPU7|ELMO1_MOUSE Engulfment and cell motility protein 1 OS=Mus musculus GN=Elmo1
PE=1 SV=2
Length = 727
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 94/194 (48%), Gaps = 22/194 (11%)
Query: 76 LQERLQTPFDESRPDHQAALRDLWRFAF-----PNVVL------NGMISEQWKDMGW-QG 123
L++R+ T D + + +L R AF PN M + +K +G+
Sbjct: 305 LEDRMMTKMDPQDQAQRDIIFELRRIAFDAESEPNNSSGSMEKRKSMYTRDYKKLGFINH 364
Query: 124 PNPSTDFRGC--GFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFML 181
NP+ DF G ++L+N+L+ AK++ ++ R++ + E PF + I ++ ML
Sbjct: 365 VNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKHECPFGRSSIELTKML 424
Query: 182 IKML---DLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNE 238
++L +L SE M F + +F+ +C+ ++++ W M A+ +FN+
Sbjct: 425 CEILKVGELPSETCNDFHPMFFTH-----DRSFEEFFCICIQLLNKTWKEMRATSEDFNK 479
Query: 239 VLKVTRRQLERELS 252
V++V + Q+ R L+
Sbjct: 480 VMQVVKEQVMRALT 493
>sp|Q92556|ELMO1_HUMAN Engulfment and cell motility protein 1 OS=Homo sapiens GN=ELMO1
PE=1 SV=2
Length = 727
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 94/194 (48%), Gaps = 22/194 (11%)
Query: 76 LQERLQTPFDESRPDHQAALRDLWRFAF-----PNVVL------NGMISEQWKDMGW-QG 123
L++R+ T D + + +L R AF PN M + +K +G+
Sbjct: 305 LEDRMMTKMDPQDQAQRDIIFELRRIAFDAESEPNNSSGSMEKRKSMYTRDYKKLGFINH 364
Query: 124 PNPSTDFRGC--GFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFML 181
NP+ DF G ++L+N+L+ AK++ ++ R++ + E PF + I ++ ML
Sbjct: 365 VNPAMDFTQTPPGMLALDNMLYFAKHHQDAYIRIVLENSSREDKHECPFGRSSIELTKML 424
Query: 182 IKML---DLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNE 238
++L +L SE M F + +F+ +C+ ++++ W M A+ +FN+
Sbjct: 425 CEILKVGELPSETCNDFHPMFFTH-----DRSFEEFFCICIQLLNKTWKEMRATSEDFNK 479
Query: 239 VLKVTRRQLERELS 252
V++V + Q+ R L+
Sbjct: 480 VMQVVKEQVMRALT 493
>sp|Q5RCC1|ELMO2_PONAB Engulfment and cell motility protein 2 OS=Pongo abelii GN=ELMO2
PE=2 SV=1
Length = 720
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 19/192 (9%)
Query: 76 LQERLQTPFDESRPDHQAALRDLWRFAF------PNVVLNG------MISEQWKDMGWQG 123
L+ER+ T D + + + +L R AF N +G M ++ +K +G+
Sbjct: 297 LEERMMTKMDPNDQAQRDIIFELRRIAFDAESDPSNAPGSGTEKRKAMYTKDYKMLGFTN 356
Query: 124 P-NPSTDFRGC--GFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFM 180
NP+ DF G ++L+N+L+LAK + ++ R++ + E PF + I ++ M
Sbjct: 357 HINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKHECPFGRSAIELTKM 416
Query: 181 LIKMLDLFSEKPRCLPGMN-FVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEV 239
L ++L + E P G N + + + AF+ L+ + ++++ W M A+ +FN+V
Sbjct: 417 LCEILQV-GELPN--EGRNDYHPMFFTHDRAFEELFGICIQLLNKTWKEMRATAEDFNKV 473
Query: 240 LKVTRRQLEREL 251
++V R Q+ R L
Sbjct: 474 MQVVREQITRAL 485
>sp|Q96JJ3|ELMO2_HUMAN Engulfment and cell motility protein 2 OS=Homo sapiens GN=ELMO2
PE=1 SV=2
Length = 720
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 19/192 (9%)
Query: 76 LQERLQTPFDESRPDHQAALRDLWRFAF------PNVVLNG------MISEQWKDMGWQG 123
L+ER+ T D + + + +L R AF N +G M ++ +K +G+
Sbjct: 297 LEERMMTKMDPNDQAQRDIIFELRRIAFDAESDPSNAPGSGTEKRKAMYTKDYKMLGFTN 356
Query: 124 P-NPSTDFRGC--GFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFM 180
NP+ DF G ++L+N+L+LAK + ++ R++ + E PF + I ++ M
Sbjct: 357 HINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKHECPFGRSAIELTKM 416
Query: 181 LIKMLDLFSEKPRCLPGMN-FVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEV 239
L ++L + E P G N + + + AF+ L+ + ++++ W M A+ +FN+V
Sbjct: 417 LCEILQV-GELPN--EGRNDYHPMFFTHDRAFEELFGICIQLLNKTWKEMRATAEDFNKV 473
Query: 240 LKVTRRQLEREL 251
++V R Q+ R L
Sbjct: 474 MQVVREQITRAL 485
>sp|A4FUD6|ELMO2_BOVIN Engulfment and cell motility protein 2 OS=Bos taurus GN=ELMO2 PE=2
SV=1
Length = 720
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 19/192 (9%)
Query: 76 LQERLQTPFDESRPDHQAALRDLWRFAF------PNVVLNG------MISEQWKDMGWQG 123
L+ER+ T D + + + +L R AF N +G M ++ +K +G+
Sbjct: 297 LEERMMTKMDPNDQAQRDIIFELRRIAFDADSDPSNAPGSGTEKRKAMYTKDYKMLGFTN 356
Query: 124 P-NPSTDFRGC--GFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFM 180
NP+ DF G ++L+N+L+LAK + ++ R++ + E PF + I ++ M
Sbjct: 357 HINPAMDFTQTPPGMLALDNMLYLAKVHQDTYIRIVLENSSREDKHECPFGRSAIELTKM 416
Query: 181 LIKMLDLFSEKPRCLPGMN-FVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEV 239
L ++L + E P G N + + + AF+ L+ + ++++ W M A+ +FN+V
Sbjct: 417 LCEILQV-GELPN--EGRNDYHPMFFTHDRAFEELFGICIQLLNKTWKEMRATAEDFNKV 473
Query: 240 LKVTRRQLEREL 251
++V R Q+ R L
Sbjct: 474 MQVVREQITRAL 485
>sp|Q54WH5|ELMOE_DICDI ELMO domain-containing protein E OS=Dictyostelium discoideum
GN=elmoE PE=4 SV=1
Length = 1677
Score = 56.2 bits (134), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 37/69 (53%)
Query: 91 HQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPA 150
HQ L DLW A + G+ SE W +G++ NP DF+ G ++L NL + +K +
Sbjct: 493 HQILLSDLWGSALSSYPFGGINSEHWLLLGFRSSNPMEDFKNTGVLALRNLSYFSKQHLQ 552
Query: 151 SFQRLLFKQ 159
FQ LL Q
Sbjct: 553 PFQSLLLTQ 561
>sp|Q09292|ELMD3_CAEEL ELMO domain-containing protein C56G7.3 OS=Caenorhabditis elegans
GN=C56G7.3 PE=4 SV=2
Length = 322
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 10/114 (8%)
Query: 81 QTPFDESRPDHQAALRD---------LWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFR 131
Q P+D H L D + + +V + W +G+Q P TDFR
Sbjct: 132 QIPYDHENGTHWLLLSDYFNNVSRSLMTSSEYSHVTNPSRVGAHWVTVGFQSATPHTDFR 191
Query: 132 GCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKML 185
GCG + L + + PA+ R + ++P AV IN++ +L+ L
Sbjct: 192 GCGVLGLLQMHTFTQRVPANLLRAIVLLATTEPN-DFPLAVVSINITSILLTQL 244
>sp|Q5XIQ2|ELMD3_RAT ELMO domain-containing protein 3 OS=Rattus norvegicus GN=Elmod3
PE=2 SV=1
Length = 356
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 81 QTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLEN 140
Q D P H L+ +++ + + + W+D+G+QG NP+TD RG GF++L +
Sbjct: 161 QCGLDSQNPTHGRVLQTIYKKLTGSKFDCALHGDHWEDLGFQGANPATDLRGTGFLALLH 220
Query: 141 LLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNF 200
LL+L + + + ++PF + +N++ + I+ L C
Sbjct: 221 LLYLVMDSKTLLMAQEILRLSHHHIQQFPFCLMSVNITRIAIQALREECLSRECNRRRKV 280
Query: 201 VRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLK 241
+ ++ + Y F + W H + ++ VLK
Sbjct: 281 IPVV-------NSFYAATFLHLARMWRTQHNTILDSGFVLK 314
>sp|Q91YP6|ELMD3_MOUSE ELMO domain-containing protein 3 OS=Mus musculus GN=Elmod3 PE=2
SV=1
Length = 381
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%)
Query: 81 QTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLEN 140
Q D P H L+ +++ + + + W+D+G+QG NP+TD RG GF++L +
Sbjct: 161 QCGLDSQNPTHGRVLQTIYKKLTGSKFDCALHGDHWEDLGFQGANPATDLRGAGFLALLH 220
Query: 141 LLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKML 185
LL+L + + + ++PF + +N++ + I+ L
Sbjct: 221 LLYLVMDSKTFLMAQEIFRLSHHHIQQFPFCLMSVNITRIAIQAL 265
>sp|Q96FG2|ELMD3_HUMAN ELMO domain-containing protein 3 OS=Homo sapiens GN=ELMOD3 PE=2
SV=2
Length = 381
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 15/133 (11%)
Query: 63 YHLTPPQEERLQRLQER-------LQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQ 115
Y PP+ QRL+E Q D P H L+ +++ + +
Sbjct: 138 YLFGPPKLH--QRLREERDLVLTIAQCGLDSQDPVHGRVLQTIYKKLTGSKFDCALHGNH 195
Query: 116 WKDMGWQGPNPSTDFRGCGF---ISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAV 172
W+D+G+QG NP+TD RG GF + L L+ +K P + + +F+ + ++PF +
Sbjct: 196 WEDLGFQGANPATDLRGAGFLALLHLLYLVMDSKTLPMAQE--IFRLSRHH-IQQFPFCL 252
Query: 173 AGINVSFMLIKML 185
+N++ + I+ L
Sbjct: 253 MSVNITHIAIQAL 265
>sp|Q58DT5|ELMD3_BOVIN ELMO domain-containing protein 3 OS=Bos taurus GN=ELMOD3 PE=2 SV=1
Length = 381
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 7/161 (4%)
Query: 81 QTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLEN 140
Q D P H L+ +++ + + + W+D+G+QG NP+TD RG GF++L +
Sbjct: 161 QCGLDSQDPMHGRVLQTIYKKLTGSKFDCALHGDHWEDLGFQGTNPATDLRGAGFLALLH 220
Query: 141 LLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNF 200
LL+L + + ++PF + +N++ + I+ L C
Sbjct: 221 LLYLVMDSKTLLMAREILRLSRHHIQQFPFCLMSVNITRIAIQALREECLSRECNRQQKV 280
Query: 201 VRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLK 241
+ ++ + Y F + W H + + VLK
Sbjct: 281 IPVV-------NSFYAATFLRLAHIWRTQHKTISDSGFVLK 314
>sp|Q92T47|DEOB_RHIME Phosphopentomutase OS=Rhizobium meliloti (strain 1021) GN=deoB PE=3
SV=1
Length = 406
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 17 LEWSQNSSHVISQLAQCFTSAMVGPRAWIG---GLFNRSANRRNERFHDYHLTPPQEERL 73
LE N V+ +L + V R ++G G F R+ NRR DY + PP+ L
Sbjct: 189 LERLLNLCEVVRRLVDDYNIGRVIARPFVGSDPGSFTRTGNRR-----DYSVLPPEPTVL 243
Query: 74 QRLQERLQT 82
RLQE +T
Sbjct: 244 DRLQEAGRT 252
>sp|Q94K01|DBR1_ARATH Lariat debranching enzyme OS=Arabidopsis thaliana GN=DBR1 PE=2 SV=1
Length = 418
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 12/55 (21%)
Query: 193 RCLPGMNFVRI--LGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRR 245
+CLPG F++I + + F+VLY D +WLA+ +FN + +TRR
Sbjct: 251 KCLPGKKFLQIIEIESEPGPFEVLY-------DEEWLAIT---RKFNSIFPLTRR 295
>sp|Q8U297|ILVD_PYRFU Dihydroxy-acid dehydratase OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=ilvD PE=3 SV=1
Length = 551
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 197 GMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDI 256
GM V+++ +D A D+L AFE A +A+ S ++ + + + +LSLED
Sbjct: 232 GMQIVKLVEKDVKARDILTREAFEDAIAVDMALGGSTNTVLHLMAIA-NEAKVDLSLEDF 290
Query: 257 DRIQD 261
DRI +
Sbjct: 291 DRISE 295
>sp|P24789|VIM1_XENLA Vimentin-1/2 OS=Xenopus laevis GN=vim1 PE=2 SV=1
Length = 458
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 50/135 (37%), Gaps = 41/135 (30%)
Query: 58 ERFHDYHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMI-SEQW 116
++ HD + Q LQ + +Q D S+PD AALRD+ R + NV + +E+W
Sbjct: 228 KKLHDEEIRELQ---LQIQESHIQVDMDVSKPDLTAALRDV-RQQYENVAAKNLSDAEEW 283
Query: 117 ---------------KDMGWQGPNPSTDFR------GCGFISL---------------EN 140
D Q ++DFR C ++ EN
Sbjct: 284 YKSKFADLSEAANRNNDALRQAKQETSDFRRQIQTLTCEIDAMKGSNESYERQMREMEEN 343
Query: 141 LLFLAKNYPASFQRL 155
A NY + QRL
Sbjct: 344 FAIEAANYQDTIQRL 358
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,037,829
Number of Sequences: 539616
Number of extensions: 4293762
Number of successful extensions: 8905
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8850
Number of HSP's gapped (non-prelim): 35
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)