Query 048536
Match_columns 267
No_of_seqs 162 out of 400
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 10:24:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2998 Uncharacterized conser 100.0 7.5E-63 1.6E-67 446.3 15.5 227 34-267 65-299 (302)
2 PF04727 ELMO_CED12: ELMO/CED- 100.0 1.6E-49 3.5E-54 338.7 14.3 169 72-241 2-170 (170)
3 KOG2999 Regulator of Rac1, req 100.0 2.9E-34 6.3E-39 276.9 14.2 199 62-263 275-487 (713)
4 PF08262 Lem_TRP: Leucophaea m 36.7 14 0.00031 17.2 0.3 6 118-123 3-8 (10)
5 PF03735 ENT: ENT domain; Int 33.1 73 0.0016 23.7 3.8 31 64-98 25-55 (73)
6 KOG4404 Tandem pore domain K+ 30.6 73 0.0016 30.5 4.2 86 66-157 35-142 (350)
7 PF11272 DUF3072: Protein of u 28.6 1.9E+02 0.0042 20.5 5.1 27 62-88 13-39 (57)
8 PHA02819 hypothetical protein; 23.3 1.4E+02 0.0031 22.1 3.8 32 212-249 2-33 (71)
9 PF11588 DUF3243: Protein of u 21.4 34 0.00073 26.1 0.2 25 80-105 42-66 (81)
10 KOG2412 Nuclear-export-signal 21.0 5.4E+02 0.012 26.5 8.4 86 74-186 336-425 (591)
No 1
>KOG2998 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.5e-63 Score=446.27 Aligned_cols=227 Identities=52% Similarity=0.869 Sum_probs=209.4
Q ss_pred hHhhhcCCccccc------ccccccccccCCcCCC-CCCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCCCc
Q 048536 34 FTSAMVGPRAWIG------GLFNRSANRRNERFHD-YHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNV 106 (267)
Q Consensus 34 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~Ls~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~ 106 (267)
.++.+.++.+|+| ++-|.|..++..+... ..+.+.+.+.++.+++++++|||++|++|+++|++||+.++|++
T Consensus 65 ss~~~~~~~~~~~~v~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~l~~~~e~~~~~~yDs~n~~H~e~L~~lwk~~~p~~ 144 (302)
T KOG2998|consen 65 SSEAPPGLISFLGRVMVDKGIKNIVDPNRRIDLAACRHLIPGYRELLQRLEELRQEPYDSDNPDHEELLLDLWKLLYPDK 144 (302)
T ss_pred ccccChhhhhhhHHHHHHhccccCCCcccchhhhhccccccCcHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhCCCC
Confidence 3567778888888 7888888888877655 88999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhhhcccCCCCCCCCcccchhhhHhhHHHHHhhChHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHhh
Q 048536 107 VLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLD 186 (267)
Q Consensus 107 ~~~~~~~~~Wk~lGFQg~dP~TDFRg~G~LgL~~LlyFa~~~~~~~~~ll~~q~s~~~~~~yPFAvagINIT~~L~~~L~ 186 (267)
++++++|++|++|||||+||+|||||+|+|||+||+|||++||+.+++++.+| +++.|+|||||||||||+|++++|+
T Consensus 145 ~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~lL~~s--~~~r~eYpfAVvgINIT~m~~qmL~ 222 (302)
T KOG2998|consen 145 ELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQRLLLKS--RHPRWEYPFAVVGINITFMAIQMLD 222 (302)
T ss_pred ccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHHHHHhc--CCCccCCceEEEeecHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999996 4567999999999999999999999
Q ss_pred hcCCCCC-CCCCCcceeccccChhhHHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 048536 187 LFSEKPR-CLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLPAY 265 (267)
Q Consensus 187 ~~~~~~~-~~~~~~f~~ll~~~~~~F~eLy~~~f~~f~~~W~~~~at~mDF~~Vl~~~r~ql~~~L~~~~v~~v~~~~~~ 265 (267)
+++++.. ++....| +++.+|+.|||++|..||++|+++++||||||.|++++|.|++++|.++++..++|+|+|
T Consensus 223 ~eal~~~~~~~~~~~-----~~~~~F~~lYc~af~~~d~~Wl~~~~simefn~Vlk~~~~qler~L~~~d~~~~~~lp~~ 297 (302)
T KOG2998|consen 223 LEALKKHFNNIVKVF-----ETEPAFDLLYCYAFLEFDKQWLEQRATIMEFNTVLKSFRRQLERELSLDDVLLITDLPAF 297 (302)
T ss_pred hhhcccccccccccc-----ccHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhhhhhcccccchhh
Confidence 9998543 3333333 788999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 048536 266 NL 267 (267)
Q Consensus 266 ~~ 267 (267)
|+
T Consensus 298 ~~ 299 (302)
T KOG2998|consen 298 NL 299 (302)
T ss_pred hh
Confidence 85
No 2
>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2. ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton
Probab=100.00 E-value=1.6e-49 Score=338.71 Aligned_cols=169 Identities=40% Similarity=0.769 Sum_probs=152.4
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCCCcccCCCCchhhhhcccCCCCCCCCcccchhhhHhhHHHHHhhChHH
Q 048536 72 RLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAKNYPAS 151 (267)
Q Consensus 72 ~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~G~LgL~~LlyFa~~~~~~ 151 (267)
.|+.|++++++|||++|++|+++|++||++++|+.+.+++.+++|++|||||+||+|||||+|+|||+||+||+++||+.
T Consensus 2 ~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~ 81 (170)
T PF04727_consen 2 TLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPDE 81 (170)
T ss_pred hHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHH
Confidence 57899999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceeccccChhhHHHHHHHHHHHHHHHHHhcCC
Q 048536 152 FQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHA 231 (267)
Q Consensus 152 ~~~ll~~q~s~~~~~~yPFAvagINIT~~L~~~L~~~~~~~~~~~~~~f~~ll~~~~~~F~eLy~~~f~~f~~~W~~~~a 231 (267)
+++|+.++.++.+..+||||+||||||.+|+++|+++...+.......+.. +++.+.+|++|||++|.+|+++|++++|
T Consensus 82 ~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~~f~elf~~~f~~f~~~W~~~~a 160 (170)
T PF04727_consen 82 FRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDSEFYKRINFLS-FFSSLEAFEELFCACFQLFDRTWKEMNA 160 (170)
T ss_pred HHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCHHHhhcccccc-cCccHHHHHHHHHHHHHHHHHHHccCCC
Confidence 999999987766667999999999999999999999765443332211111 4677889999999999999999999999
Q ss_pred ChhcHHHHHH
Q 048536 232 SYMEFNEVLK 241 (267)
Q Consensus 232 t~mDF~~Vl~ 241 (267)
++|||++|++
T Consensus 161 t~~dF~~V~~ 170 (170)
T PF04727_consen 161 TIMDFNKVLK 170 (170)
T ss_pred CHHHHHhhcC
Confidence 9999999975
No 3
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-34 Score=276.87 Aligned_cols=199 Identities=24% Similarity=0.469 Sum_probs=183.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCCCcccC-----------CCCchhhhhcccCC-CCCCCC
Q 048536 62 DYHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLN-----------GMISEQWKDMGWQG-PNPSTD 129 (267)
Q Consensus 62 ~~~Ls~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~-----------~~~~~~Wk~lGFQg-~dP~TD 129 (267)
+++|+..|...+..+..|+.++.|+.+...++.++.+-..+|.++.-+ .+.....|.+||-. .||+.|
T Consensus 275 ~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~d 354 (713)
T KOG2999|consen 275 PIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQD 354 (713)
T ss_pred hHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHHh
Confidence 459999999999999999999999999999999999999999774322 24568999999998 899999
Q ss_pred cc--cchhhhHhhHHHHHhhChHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceeccccC
Q 048536 130 FR--GCGFISLENLLFLAKNYPASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGED 207 (267)
Q Consensus 130 FR--g~G~LgL~~LlyFa~~~~~~~~~ll~~q~s~~~~~~yPFAvagINIT~~L~~~L~~~~~~~~~~~~~~f~~ll~~~ 207 (267)
|- .+|+|+|+||+|||++||+.+.+++.++.++.++++|||+.++|.+|.|||++|+++. +.+.....|.|+||.+
T Consensus 355 f~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrVge--~p~E~~~df~pmfFth 432 (713)
T KOG2999|consen 355 FGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRVGE--PPDELDRDFIPMFFTH 432 (713)
T ss_pred cccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhcCC--CchhhcCccceeeecC
Confidence 98 8999999999999999999999999999999999999999999999999999999976 4445556799999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 048536 208 EAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDIDRIQDLP 263 (267)
Q Consensus 208 ~~~F~eLy~~~f~~f~~~W~~~~at~mDF~~Vl~~~r~ql~~~L~~~~v~~v~~~~ 263 (267)
+..|+++||+|.++|+++|++|+||-.||++|+++||+||.|+|+.+ +++++++.
T Consensus 433 d~~Fee~FciciqLlnkTWKEMrAt~edf~KVmqVVrEQl~r~L~~k-p~sld~fk 487 (713)
T KOG2999|consen 433 DTPFEELFCICVQLLNRTWKEMRATAEDFEKVMQVVREQLRRALKRK-PQSLDQFK 487 (713)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHHhccC-CccHHHHH
Confidence 99999999999999999999999999999999999999999999986 88887764
No 4
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=36.73 E-value=14 Score=17.22 Aligned_cols=6 Identities=50% Similarity=1.265 Sum_probs=4.7
Q ss_pred hcccCC
Q 048536 118 DMGWQG 123 (267)
Q Consensus 118 ~lGFQg 123 (267)
.|||||
T Consensus 3 smgf~g 8 (10)
T PF08262_consen 3 SMGFHG 8 (10)
T ss_pred cccccc
Confidence 479987
No 5
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=33.13 E-value=73 Score=23.66 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 048536 64 HLTPPQEERLQRLQERLQTPFDESRPDHQAALRDL 98 (267)
Q Consensus 64 ~Ls~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~L 98 (267)
+||..|+..|..|++..+++ |.+|...|..+
T Consensus 25 ~lsweke~lLt~Lr~~L~IS----~e~H~~~l~~~ 55 (73)
T PF03735_consen 25 PLSWEKEKLLTELRKELNIS----DEEHREELRRA 55 (73)
T ss_dssp S--HHHHHHHHHHHHHTT------HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHH
Confidence 48999999999999887764 77898888776
No 6
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=30.63 E-value=73 Score=30.47 Aligned_cols=86 Identities=22% Similarity=0.345 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCCCcccCCCCchhhh-------------hcccCCCCCCCCcc-
Q 048536 66 TPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPNVVLNGMISEQWK-------------DMGWQGPNPSTDFR- 131 (267)
Q Consensus 66 s~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk-------------~lGFQg~dP~TDFR- 131 (267)
...++++++.-+.+.+..|+-++++-+.+..-+-+.. | ...+.+|| .|||=.+.|+||--
T Consensus 35 E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~-p-----h~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~GK 108 (350)
T KOG4404|consen 35 EARERERLERRLANLKRKYNLSEEDYRELERVILKSE-P-----HKAGPQWKFAGAFYFATTVITTIGYGHSTPSTDGGK 108 (350)
T ss_pred hHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-c-----cccccccccCcceEEEEEEEeeeccCCCCCCCcCce
Confidence 3456778888888889999988887766655543332 2 24567886 58898999999933
Q ss_pred ----cchhhhHhh-HHH---HHhhChHHHHHHHH
Q 048536 132 ----GCGFISLEN-LLF---LAKNYPASFQRLLF 157 (267)
Q Consensus 132 ----g~G~LgL~~-Lly---Fa~~~~~~~~~ll~ 157 (267)
.-|++|..+ |+. |-+.-......+++
T Consensus 109 ~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~ 142 (350)
T KOG4404|consen 109 AFCMFYALVGIPLTLVMFQSIGERLNTFVAYILR 142 (350)
T ss_pred ehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433 333 33444444444443
No 7
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=28.56 E-value=1.9e+02 Score=20.55 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCCc
Q 048536 62 DYHLTPPQEERLQRLQERLQTPFDESR 88 (267)
Q Consensus 62 ~~~Ls~~Q~~~L~~L~~~~~~~~d~~~ 88 (267)
+-+.|..|..+|+.|.++.+.+|+..-
T Consensus 13 DePmT~aQ~syL~tL~e~Age~~~~~L 39 (57)
T PF11272_consen 13 DEPMTGAQASYLKTLSEEAGEPFPDDL 39 (57)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCCCcc
Confidence 368899999999999999999999854
No 8
>PHA02819 hypothetical protein; Provisional
Probab=23.34 E-value=1.4e+02 Score=22.12 Aligned_cols=32 Identities=31% Similarity=0.552 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHH
Q 048536 212 DVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLER 249 (267)
Q Consensus 212 ~eLy~~~f~~f~~~W~~~~at~mDF~~Vl~~~r~ql~~ 249 (267)
++||+++|=.| |..+-.||+..++.+|+-+..
T Consensus 2 DKLYaaiFGvF------msS~DdDFnnFI~VVksVLtd 33 (71)
T PHA02819 2 DKLYSAIFGVF------MSSSDDDFNNFINVVKSVLNN 33 (71)
T ss_pred hhHHHHHHHhh------hCCchhHHHHHHHHHHHHHcC
Confidence 57899988887 567778999999998877654
No 9
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=21.40 E-value=34 Score=26.09 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=13.8
Q ss_pred hCCCCCCCcHHHHHHHHHHHHHhCCC
Q 048536 80 LQTPFDESRPDHQAALRDLWRFAFPN 105 (267)
Q Consensus 80 ~~~~~d~~~~~H~~~L~~Lw~~~~~~ 105 (267)
+.-.+||.|+ .+++|++||+.+..+
T Consensus 42 LA~~vdP~N~-EerlLkELW~va~e~ 66 (81)
T PF11588_consen 42 LAKNVDPKNP-EERLLKELWDVADEE 66 (81)
T ss_dssp HHT-----SH-HHHHHHHHHHC--HH
T ss_pred HHhcCCCCCH-HHHHHHHHHHhCCHH
Confidence 4457889887 578999999988544
No 10
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=20.98 E-value=5.4e+02 Score=26.48 Aligned_cols=86 Identities=17% Similarity=0.204 Sum_probs=46.2
Q ss_pred HHHHHHhCCCCCC---CcHHHHHHHHHHHHHhCCCcccCCCCchhhhhcccCCCCCCCCcccchhhhH-hhHHHHHhhCh
Q 048536 74 QRLQERLQTPFDE---SRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISL-ENLLFLAKNYP 149 (267)
Q Consensus 74 ~~L~~~~~~~~d~---~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~G~LgL-~~LlyFa~~~~ 149 (267)
..++.+++.||.. +|+.|-..+...-..++.+.+- ..|| |++ .||.++|+..-
T Consensus 336 ~~~kr~in~~~~qis~~~~q~L~qI~dkl~s~~~~~~~--------------~~~p---------l~~~~~~~~iaka~V 392 (591)
T KOG2412|consen 336 QSLKRAINPPFSQISKSNGQVLRQIFDKLDSLFGGIPD--------------IVDP---------LAYDWCLNFIAKAFV 392 (591)
T ss_pred HHHHhhcCCChhhhhhccHHHHHHHHHHHHHHhcCCCC--------------CCCc---------hhHHHHHHHHHHHHH
Confidence 3345666667665 5555544444443444433221 3344 444 46777777654
Q ss_pred HHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHhh
Q 048536 150 ASFQRLLFKQGGNRATWEYPFAVAGINVSFMLIKMLD 186 (267)
Q Consensus 150 ~~~~~ll~~q~s~~~~~~yPFAvagINIT~~L~~~L~ 186 (267)
.....-+. + ++..-||+|.+.+-|-...-++-+
T Consensus 393 ~Q~Etev~---~-~PeaAfPla~V~l~i~~q~Pdv~d 425 (591)
T KOG2412|consen 393 KQAETEVA---S-KPEAAFPLAKVILYIWSQFPDVGD 425 (591)
T ss_pred HHHHHHHH---h-CCcccchHHHHHHHHHHhCchHHH
Confidence 43332222 2 345679999998877665444433
Done!