Query 048536
Match_columns 267
No_of_seqs 162 out of 400
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 18:07:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048536.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048536hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uz3_A EMSY protein; chromatin 38.5 80 0.0027 24.0 6.1 31 64-98 42-72 (102)
2 2fmm_E Protein EMSY; ENT domai 33.0 98 0.0033 24.6 6.0 53 64-120 34-90 (133)
3 3o39_A Periplasmic protein rel 22.0 1.5E+02 0.0051 22.4 5.2 36 63-98 16-51 (108)
4 2k19_A Putative piscicolin 126 20.2 80 0.0027 23.8 3.2 23 62-84 74-96 (98)
5 3d0w_A YFLH protein; GRAM-posi 20.1 37 0.0013 25.9 1.3 25 80-105 64-88 (104)
6 1nro_R Receptor based peptide 17.0 25 0.00086 19.8 -0.2 14 2-15 13-26 (27)
7 3oeo_A Spheroplast protein Y; 15.1 1.8E+02 0.006 22.8 4.3 37 62-98 31-67 (138)
8 2zrr_A Mundticin KS immunity p 15.0 78 0.0027 24.7 2.0 23 62-84 94-116 (118)
9 2gx1_A Neurotoxin MAGI-5; spid 14.1 19 0.00065 20.8 -1.3 14 6-19 5-18 (29)
10 3itf_A Periplasmic adaptor pro 13.4 1.5E+02 0.0052 23.6 3.5 38 62-99 43-80 (145)
No 1
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=38.48 E-value=80 Score=24.00 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 048536 64 HLTPPQEERLQRLQERLQTPFDESRPDHQAALRDL 98 (267)
Q Consensus 64 ~Ls~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~L 98 (267)
+||..|+..|..||+..++ +|.+|...|..+
T Consensus 42 ~Lsweke~LLt~LR~~L~I----S~eeH~~elrr~ 72 (102)
T 1uz3_A 42 DLTKEKKDLLGELSKVLSI----STERHRAEVRRA 72 (102)
T ss_dssp SCCHHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHh
Confidence 5999999999999988765 588898887665
No 2
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=32.98 E-value=98 Score=24.60 Aligned_cols=53 Identities=23% Similarity=0.199 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCCC---cc-cCCCCchhhhhcc
Q 048536 64 HLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLWRFAFPN---VV-LNGMISEQWKDMG 120 (267)
Q Consensus 64 ~Ls~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw~~~~~~---~~-~~~~~~~~Wk~lG 120 (267)
+||..|+..|..||+.+++ ++.+|...|..+-+.-.-. +. ..+..+.+|..-|
T Consensus 34 ~LSweke~LLt~LR~~L~I----S~eeH~~elrr~~sDe~l~~I~~~~~g~~s~~~W~~eg 90 (133)
T 2fmm_E 34 DLTKEKKDLLGELSKVLSI----STERHRAEVRRAVNDERLTTIAHNMSGPNSSSEWSIEG 90 (133)
T ss_dssp SCCHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHCHHHHHHHHHHHCSCCSHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHhhhHHHHHHHHHhhcCCcchHHHHHcc
Confidence 5999999999999988765 5788988876653221000 00 1224678888877
No 3
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=22.05 E-value=1.5e+02 Score=22.44 Aligned_cols=36 Identities=14% Similarity=0.351 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 048536 63 YHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDL 98 (267)
Q Consensus 63 ~~Ls~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~L 98 (267)
++||..|...++.|++...........+-.+.|..|
T Consensus 16 L~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~L 51 (108)
T 3o39_A 16 LNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDI 51 (108)
T ss_dssp SCCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 799999999999999887776665554444444433
No 4
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=20.24 E-value=80 Score=23.81 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCC
Q 048536 62 DYHLTPPQEERLQRLQERLQTPF 84 (267)
Q Consensus 62 ~~~Ls~~Q~~~L~~L~~~~~~~~ 84 (267)
...||+.|.+.|..|++..++-|
T Consensus 74 ~i~Ls~~qs~~lK~Lr~Ls~IRY 96 (98)
T 2k19_A 74 GVTLSDYQSKKLKELTSISNIRY 96 (98)
T ss_dssp TCCCCHHHHHHHHHHHHHCSCCT
T ss_pred CcccCHHHHHHHHHHHHHHhhhc
Confidence 47999999999999999988765
No 5
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=20.13 E-value=37 Score=25.94 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=19.7
Q ss_pred hCCCCCCCcHHHHHHHHHHHHHhCCC
Q 048536 80 LQTPFDESRPDHQAALRDLWRFAFPN 105 (267)
Q Consensus 80 ~~~~~d~~~~~H~~~L~~Lw~~~~~~ 105 (267)
+--.+||.|+ .+++|++||..+..+
T Consensus 64 LA~~vdP~N~-EerlLkELW~Va~ee 88 (104)
T 3d0w_A 64 LAKHEEPQNG-EEMLLQELWSVADED 88 (104)
T ss_dssp HHTCCCCCSH-HHHHHHHHHHHCCHH
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCHH
Confidence 4467889887 579999999998544
No 6
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=16.96 E-value=25 Score=19.84 Aligned_cols=14 Identities=29% Similarity=0.795 Sum_probs=10.9
Q ss_pred chhhHhhhhccchh
Q 048536 2 DEDEIYWRQKKDDE 15 (267)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (267)
|.|+-+|.++.+-|
T Consensus 13 dkyepfwedeekne 26 (27)
T 1nro_R 13 DKYEPFWEDEEKNE 26 (27)
T ss_pred cccCccccchhhcc
Confidence 67889999876654
No 7
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=15.14 E-value=1.8e+02 Score=22.76 Aligned_cols=37 Identities=16% Similarity=0.384 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 048536 62 DYHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDL 98 (267)
Q Consensus 62 ~~~Ls~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~L 98 (267)
.++||+.|+..|+.|++...........+-.+.|..|
T Consensus 31 ~L~LT~eQ~~qir~i~~~~r~~~~~~~~~~r~~l~~L 67 (138)
T 3oeo_A 31 DLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDI 67 (138)
T ss_dssp CSCCCTTHHHHHHHHHHHHSSSSCCCCTTHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999887666554333444555555
No 8
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=15.03 E-value=78 Score=24.67 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=17.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCC
Q 048536 62 DYHLTPPQEERLQRLQERLQTPF 84 (267)
Q Consensus 62 ~~~Ls~~Q~~~L~~L~~~~~~~~ 84 (267)
...||+.|.+.|..|++..++-|
T Consensus 94 ~I~LS~~qs~~LK~Lr~LSnIRY 116 (118)
T 2zrr_A 94 GVSLNENQSKKLKELMSISNIRY 116 (118)
T ss_dssp TCCCCHHHHHHHHHHHTTC----
T ss_pred CcccCHHHHHHHHHHHHHHhhhc
Confidence 37999999999999998887755
No 9
>2gx1_A Neurotoxin MAGI-5; spider toxin; NMR {Synthetic}
Probab=14.13 E-value=19 Score=20.82 Aligned_cols=14 Identities=29% Similarity=0.869 Sum_probs=11.7
Q ss_pred HhhhhccchhhHHH
Q 048536 6 IYWRQKKDDEELEW 19 (267)
Q Consensus 6 ~~~~~~~~~~~~~~ 19 (267)
.+|+-++++|+-.|
T Consensus 5 tfw~ck~~keccgw 18 (29)
T 2gx1_A 5 TFWKCKNKKECCGW 18 (29)
T ss_dssp SSSCCSSTTSBSSC
T ss_pred EEEEecCCcccccc
Confidence 47999999998877
No 10
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=13.44 E-value=1.5e+02 Score=23.56 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 048536 62 DYHLTPPQEERLQRLQERLQTPFDESRPDHQAALRDLW 99 (267)
Q Consensus 62 ~~~Ls~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~Lw 99 (267)
.++||+.|...|+.|++........-+.+..+.|..|.
T Consensus 43 ~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li 80 (145)
T 3itf_A 43 GISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLV 80 (145)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Confidence 38999999999999986554433343444455555443
Done!