Query 048536
Match_columns 267
No_of_seqs 162 out of 400
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 18:07:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048536.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048536hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uz3a1 a.283.1.1 (A:13-102) E 36.8 44 0.0032 23.1 6.1 31 64-98 30-60 (90)
2 d2c1wa1 d.294.1.1 (A:6-289) En 16.3 54 0.0039 27.2 3.8 57 85-146 124-180 (284)
3 d1ya0a1 a.118.8.1 (A:1-497) SM 14.7 1.5E+02 0.011 25.0 6.8 72 168-255 217-288 (497)
4 d1olma1 a.5.3.1 (A:1-75) Super 13.4 67 0.0049 20.5 3.0 19 64-82 7-25 (75)
5 d1buca2 e.6.1.1 (A:1-232) Buty 13.3 1.8E+02 0.013 21.5 6.2 30 62-91 2-31 (232)
6 d1w36b1 c.37.1.19 (B:1-485) Ex 12.4 29 0.0021 29.0 0.9 40 86-127 388-428 (485)
7 d1knza_ e.34.1.1 (A:) NSP3 hom 9.3 3.3E+02 0.024 19.9 6.4 47 209-256 7-53 (157)
8 d2d29a2 e.6.1.1 (A:2-234) Acyl 7.9 1.1E+02 0.008 23.0 2.9 24 63-86 4-27 (233)
9 d2ifta1 c.66.1.46 (A:11-193) P 7.5 60 0.0044 24.2 1.0 28 130-158 51-84 (183)
10 d2a61a1 a.4.5.28 (A:5-143) Tra 7.3 2.2E+02 0.016 19.4 4.2 77 174-250 58-138 (139)
No 1
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.82 E-value=44 Score=23.09 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 048536 64 HLTPPQEERLQRLQERLQTPFDESRPDHQAALRDL 98 (267)
Q Consensus 64 ~Ls~~Q~~~L~~L~~~~~~~~d~~~~~H~~~L~~L 98 (267)
+||..|+..|..|++...+ ++.+|...|..+
T Consensus 30 ~lsweke~lLt~LR~~L~I----S~eeHr~elrr~ 60 (90)
T d1uz3a1 30 DLTKEKKDLLGELSKVLSI----STERHRAEVRRA 60 (90)
T ss_dssp SCCHHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHh
Confidence 6999999999999987655 588898877655
No 2
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=16.26 E-value=54 Score=27.19 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=36.4
Q ss_pred CCCcHHHHHHHHHHHHHhCCCcccCCCCchhhhhcccCCCCCCCCcccchhhhHhhHHHHHh
Q 048536 85 DESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDMGWQGPNPSTDFRGCGFISLENLLFLAK 146 (267)
Q Consensus 85 d~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~G~LgL~~LlyFa~ 146 (267)
..+..+..+.|+.||-..++...-....+.-++.+ |=|+. -||.++.|++|-++|..
T Consensus 124 ~~s~~~Fk~~L~~lWF~~Y~R~~g~~~dSSgFEHV-FvGE~----k~g~~V~G~HNWi~fy~ 180 (284)
T d2c1wa1 124 KPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHV-FVGES----KRGQEMMGLHNWVQFYL 180 (284)
T ss_dssp CSSHHHHHHHHHHHHHSCBCC--CCCCCBCHHHHH-TTSCS----SSSCSCCCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHhcccCcccCCCCCCCCCCcceE-eeccc----cCCCcccceehHHHHHH
Confidence 34567889999999999986532222223333333 34441 35678999999988874
No 3
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.68 E-value=1.5e+02 Score=25.01 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=42.9
Q ss_pred cchHHHHHHHHHHHHHHhhhcCCCCCCCCCCcceeccccChhhHHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHH
Q 048536 168 YPFAVAGINVSFMLIKMLDLFSEKPRCLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQL 247 (267)
Q Consensus 168 yPFAvagINIT~~L~~~L~~~~~~~~~~~~~~f~~ll~~~~~~F~eLy~~~f~~f~~~W~~~~at~mDF~~Vl~~~r~ql 247 (267)
=||+.|--|+..++-...+.....+.......| ...|-.+++..| .+.+..+|..+.+.+.+++
T Consensus 217 ~~~~~a~~nL~~~~~~~~~~~~~~~~~~~~~~~-------~~~f~~~~~~l~---------~~~~~~~~~~~~~~~~~~l 280 (497)
T d1ya0a1 217 FPFPAASTNLQKALSKALESRDEVKTKWGVSDF-------IKAFIKFHGHVY---------LSKSLEKLSPLREKLEEQF 280 (497)
T ss_dssp BCCHHHHHHHHHHHHHHTTSCCCCCSSCCHHHH-------HHHHHHHHHHHH---------HTCCGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhhhhhhccccccchH-------HHHHHHHHHHHH---------hCCchhhHHHHHHHHHHHH
Confidence 388888889888776665433211111000011 123444444433 2677889999999999999
Q ss_pred HHhhccCC
Q 048536 248 ERELSLED 255 (267)
Q Consensus 248 ~~~L~~~~ 255 (267)
...+....
T Consensus 281 ~~~l~~~~ 288 (497)
T d1ya0a1 281 KELLFQKA 288 (497)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 88886543
No 4
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.39 E-value=67 Score=20.50 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=16.8
Q ss_pred CCCHHHHHHHHHHHHHhCC
Q 048536 64 HLTPPQEERLQRLQERLQT 82 (267)
Q Consensus 64 ~Ls~~Q~~~L~~L~~~~~~ 82 (267)
+||+.|+..|..|++.+..
T Consensus 7 elt~~q~~~l~elr~~l~~ 25 (75)
T d1olma1 7 DLSPRQKEALAKFRENVQD 25 (75)
T ss_dssp BCCHHHHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHHHHHHh
Confidence 8999999999999988754
No 5
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]}
Probab=13.30 E-value=1.8e+02 Score=21.55 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCCcHHH
Q 048536 62 DYHLTPPQEERLQRLQERLQTPFDESRPDH 91 (267)
Q Consensus 62 ~~~Ls~~Q~~~L~~L~~~~~~~~d~~~~~H 91 (267)
++.||+.|+..+..+++-+...+.+.-.++
T Consensus 2 df~lt~~~~~l~~~~r~f~~~~l~p~~~e~ 31 (232)
T d1buca2 2 DFNLTDIQQDFLKLAHDFGEKKLAPTVTER 31 (232)
T ss_dssp BCCCCHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 578999999988888887766665544433
No 6
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=12.41 E-value=29 Score=29.01 Aligned_cols=40 Identities=18% Similarity=0.526 Sum_probs=28.0
Q ss_pred CCcHHHHHHHHHHHHHhCCCcccCCCCchhhhhc-ccCCCCCC
Q 048536 86 ESRPDHQAALRDLWRFAFPNVVLNGMISEQWKDM-GWQGPNPS 127 (267)
Q Consensus 86 ~~~~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~l-GFQg~dP~ 127 (267)
.+|+.+.++|+.|+... ++..+. .+|+.|..| ||+|+||.
T Consensus 388 Dts~~Q~~ll~~L~~~~-~~~~l~-~VGD~kQSIY~FRgad~~ 428 (485)
T d1w36b1 388 DTDPQQYRIFRRIWHHQ-PETALL-LIGDPKQAIYAFRGADIF 428 (485)
T ss_dssp GCCHHHHHHHHHHHTTC-TTCEEE-EEECGGGCCCGGGTCCHH
T ss_pred cCCHHHHHHHHHHHhCC-CCCeEE-EEecCcchhccccCCCHH
Confidence 37888889999887542 111111 478999977 99999983
No 7
>d1knza_ e.34.1.1 (A:) NSP3 homodimer {Simian 11 rotavirus [TaxId: 10923]}
Probab=9.32 E-value=3.3e+02 Score=19.87 Aligned_cols=47 Identities=6% Similarity=0.202 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCChhcHHHHHHHHHHHHHHhhccCCC
Q 048536 209 AAFDVLYCVAFEMMDAQWLAMHASYMEFNEVLKVTRRQLERELSLEDI 256 (267)
Q Consensus 209 ~~F~eLy~~~f~~f~~~W~~~~at~mDF~~Vl~~~r~ql~~~L~~~~v 256 (267)
..|+.-|.+++....+.-..++.+| ||++|...++....-.+-..+|
T Consensus 7 sI~n~af~aA~~~~~s~l~~~gi~y-D~~ev~~r~k~k~d~~mdDSGV 53 (157)
T d1knza_ 7 SIINSSFEAAVVAATSALENMGIEY-DYQDIYSRVKNKFDFVMDDSGV 53 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHhhcceecchhH
Confidence 3577778888888888888888776 8999999998887766655444
No 8
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=7.91 E-value=1.1e+02 Score=23.03 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCCC
Q 048536 63 YHLTPPQEERLQRLQERLQTPFDE 86 (267)
Q Consensus 63 ~~Ls~~Q~~~L~~L~~~~~~~~d~ 86 (267)
+.||+.|+..+..+|+-+...+.|
T Consensus 4 F~l~~e~~~l~~~~r~f~~~~i~p 27 (233)
T d2d29a2 4 FEEGAEERQVLGPFREFLKAEVAP 27 (233)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHTGG
T ss_pred CCCCHHHHHHHHHHHHHHHHhCcc
Confidence 689999999998888766544433
No 9
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}
Probab=7.54 E-value=60 Score=24.21 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=21.3
Q ss_pred cccchhhhHhhHH------HHHhhChHHHHHHHHh
Q 048536 130 FRGCGFISLENLL------FLAKNYPASFQRLLFK 158 (267)
Q Consensus 130 FRg~G~LgL~~Ll------yFa~~~~~~~~~ll~~ 158 (267)
|-|+|.+||++|- +|+++.+..+. ++.+
T Consensus 51 FaGsG~~glEalSRGA~~v~fVE~~~~a~~-~ik~ 84 (183)
T d2ifta1 51 FAGSGSLGFEALSRQAKKVTFLELDKTVAN-QLKK 84 (183)
T ss_dssp TCTTCHHHHHHHHTTCSEEEEECSCHHHHH-HHHH
T ss_pred ccCccceeeeeeeecceeeEEeecccchhh-hHhh
Confidence 7899999999994 47788887653 4444
No 10
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=7.25 E-value=2.2e+02 Score=19.39 Aligned_cols=77 Identities=10% Similarity=0.009 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhhhcCCCCC---CCCCCcceeccccChhhHHHHHHHHHHHHHHHHHhcC-CChhcHHHHHHHHHHHHHH
Q 048536 174 GINVSFMLIKMLDLFSEKPR---CLPGMNFVRILGEDEAAFDVLYCVAFEMMDAQWLAMH-ASYMEFNEVLKVTRRQLER 249 (267)
Q Consensus 174 gINIT~~L~~~L~~~~~~~~---~~~~~~f~~ll~~~~~~F~eLy~~~f~~f~~~W~~~~-at~mDF~~Vl~~~r~ql~~ 249 (267)
.-+||.++-.+.+.+-.... ...+...+.+-......+.++....-......+.... .....|..++..+...+++
T Consensus 58 ~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~le~ 137 (139)
T d2a61a1 58 KSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERRENFIEKITSDLGKEKSSKILDYLKELKGVMER 137 (139)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhc
Confidence 34788888888776642211 1122334444333345677777666677777777754 5677888999988888876
Q ss_pred h
Q 048536 250 E 250 (267)
Q Consensus 250 ~ 250 (267)
-
T Consensus 138 ~ 138 (139)
T d2a61a1 138 N 138 (139)
T ss_dssp H
T ss_pred c
Confidence 4
Done!