BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048538
(181 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 150 bits (379), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 114/196 (58%), Gaps = 29/196 (14%)
Query: 15 DPSPLQDICVA-----------------------------IDEPKNAANRLGFSVKIANV 45
DP PLQD CVA + + N + G +V +V
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDV 61
Query: 46 EQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAK 105
+ PG NTLG+S R+D+AP G NPPH HPRAT+I V++G L VG + S + N L ++
Sbjct: 62 AEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121
Query: 106 VLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALSSQNPGVITIANSVFGANPPINPDFLAK 165
V++ G+ FV P GL+HFQFN+GKT A + + +SQNPG++ + ++FG++PPI L K
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTK 181
Query: 166 AFQLDVDVVKDLEAKF 181
A +++ VV+ L++KF
Sbjct: 182 ALRVEAGVVELLKSKF 197
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 114/196 (58%), Gaps = 29/196 (14%)
Query: 15 DPSPLQDICVA-----------------------------IDEPKNAANRLGFSVKIANV 45
DP PLQD CVA + + N + G +V +V
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDV 61
Query: 46 EQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAK 105
+ PG NTLG+S R+D+AP G NPPH HPRAT+I V++G L VG + S + N L ++
Sbjct: 62 AEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121
Query: 106 VLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALSSQNPGVITIANSVFGANPPINPDFLAK 165
V++ G+ FV P GL+HFQFN+GKT A + + +SQNPG++ + ++FG++PPI L K
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTK 181
Query: 166 AFQLDVDVVKDLEAKF 181
A +++ VV+ L++KF
Sbjct: 182 ALRVEAGVVELLKSKF 197
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/196 (39%), Positives = 114/196 (58%), Gaps = 29/196 (14%)
Query: 15 DPSPLQDICVA-----------------------------IDEPKNAANRLGFSVKIANV 45
DP PLQD CVA + + N + G +V +V
Sbjct: 2 DPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDV 61
Query: 46 EQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAK 105
+ PG NTLG+S R+D+AP G NPPH HPRAT+I V++G L VG + S + N L ++
Sbjct: 62 AEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSR 121
Query: 106 VLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALSSQNPGVITIANSVFGANPPINPDFLAK 165
V++ G+ FV P GL+HFQFN+GKT A + + +SQNPG++ + ++FG++PPI L K
Sbjct: 122 VVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPTPVLTK 181
Query: 166 AFQLDVDVVKDLEAKF 181
A +++ VV+ L++KF
Sbjct: 182 ALRVEAGVVELLKSKF 197
>pdb|2EVX|A Chain A, Crystal Structure Of Pumpkin Seed Globulin
pdb|2E9Q|A Chain A, Recombinant Pro-11s Globulin Of Pumpkin
Length = 459
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 107 LKKGDVFVFPIGLIHFQFNIGKTNAVAIAALSSQNPGVITIANSVFGANPPINPDFLA 164
++GD+ V P G+ H+ +N G+++ V I ++N +AN + +P + +LA
Sbjct: 131 FREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRN-----VANQI---DPYLRKFYLA 180
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 105 KVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALSSQN 141
+ L++GD+F P G+ H+ +N G VA+ + + N
Sbjct: 132 RHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTAN 168
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 105 KVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALSS--------QNPGVITIA 148
+ +GDV V P G+ ++ +N G VAI+ L + QNP V +A
Sbjct: 114 RHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLA 165
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 7/133 (5%)
Query: 48 IPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVL 107
+P L G+SA + G PH + A ++ V G V V N N + L
Sbjct: 358 LPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVV--NCQGNAVFDGEL 415
Query: 108 KKGDVFVFPIGLIHFQFNIGKTNAVAIAALSSQNPGVITIANSVFGANPPINPDFLAKAF 167
++G + V P + + G + + + V + VF A P + L+ ++
Sbjct: 416 RRGQLLVVPQNFVVAE--QGGEQGLEYVVFKTHHNAVSSYIKDVFRAIP---SEVLSNSY 470
Query: 168 QLDVDVVKDLEAK 180
L V+ L+ +
Sbjct: 471 NLGQSQVRQLKYQ 483
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 105 KVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALSS--------QNPGVITIA 148
+ +GDV V P G+ ++ +N G VAI+ L + QNP V +A
Sbjct: 115 RHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQLDQNPRVFYLA 166
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 7/133 (5%)
Query: 48 IPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVL 107
+P L G+SA + G PH + A ++ V G V V N N + L
Sbjct: 359 LPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVV--NXQGNAVFDGEL 416
Query: 108 KKGDVFVFPIGLIHFQFNIGKTNAVAIAALSSQNPGVITIANSVFGANPPINPDFLAKAF 167
++G + V P + + G + + + V + VF A P + L+ ++
Sbjct: 417 RRGQLLVVPQNFVVAE--QGGEQGLEYVVFKTHHNAVSSYIKDVFRAIP---SEVLSNSY 471
Query: 168 QLDVDVVKDLEAK 180
L V+ L+ +
Sbjct: 472 NLGQSQVRQLKYQ 484
>pdb|3D82|A Chain A, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|B Chain B, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|C Chain C, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|D Chain D, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
pdb|3D82|E Chain E, Crystal Structure Of A Cupin-2 Domain Containing Protein
(Sfri_3543) From Shewanella Frigidimarina Ncimb 400 At
2.05 A Resolution
Length = 102
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 67 GQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIH 121
G+ H H ++ V EGTL + F N L+ G+ +V P G+ H
Sbjct: 40 GEFVWHEHADTDEVFIVXEGTLQIAFRDQN--------ITLQAGEXYVIPKGVEH 86
>pdb|1MI2|A Chain A, Solution Structure Of Murine Macrophage Inflammatory
Protein-2, Nmr, 20 Structures
pdb|1MI2|B Chain B, Solution Structure Of Murine Macrophage Inflammatory
Protein-2, Nmr, 20 Structures
pdb|3N52|A Chain A, Crystal Structure Analysis Of Mip2
pdb|3N52|B Chain B, Crystal Structure Analysis Of Mip2
pdb|3N52|C Chain C, Crystal Structure Analysis Of Mip2
pdb|3N52|D Chain D, Crystal Structure Analysis Of Mip2
Length = 73
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 69 NPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGD 111
PP H T+++A L+G V L +I K+L KG
Sbjct: 29 TPPGPHCAQTEVIATLKGGQKVCLDPEAPLVQKIIQKILNKGK 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,838,908
Number of Sequences: 62578
Number of extensions: 176516
Number of successful extensions: 467
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 22
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)