Query 048538
Match_columns 181
No_of_seqs 150 out of 1597
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 10:25:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 99.9 1.3E-23 2.8E-28 181.6 17.2 139 33-180 224-362 (367)
2 PLN00212 glutelin; Provisional 99.9 2.3E-23 5E-28 184.7 17.9 155 20-180 41-249 (493)
3 smart00835 Cupin_1 Cupin. This 99.9 3.7E-20 8E-25 140.9 18.4 138 32-174 6-145 (146)
4 PLN00212 glutelin; Provisional 99.9 2.3E-20 5E-25 165.7 18.2 143 32-180 324-468 (493)
5 TIGR03404 bicupin_oxalic bicup 99.8 2.8E-20 6.1E-25 160.9 15.8 134 36-180 49-185 (367)
6 PF00190 Cupin_1: Cupin; Inte 99.8 4.6E-20 1E-24 140.0 12.2 129 30-174 7-143 (144)
7 COG2140 Thermophilic glucose-6 99.7 1.4E-15 3E-20 121.0 11.5 135 34-180 63-199 (209)
8 PF07883 Cupin_2: Cupin domain 99.6 4.6E-15 1E-19 98.5 7.3 70 60-137 2-71 (71)
9 PRK13290 ectC L-ectoine syntha 99.5 1.8E-13 3.9E-18 101.9 13.1 80 55-144 34-114 (125)
10 COG0662 {ManC} Mannose-6-phosp 99.5 1.3E-13 2.8E-18 102.8 11.6 79 55-141 35-113 (127)
11 COG1917 Uncharacterized conser 99.5 1.9E-13 4.2E-18 101.8 11.2 80 52-139 39-118 (131)
12 COG3837 Uncharacterized conser 99.5 5.4E-13 1.2E-17 101.4 9.9 93 45-147 33-128 (161)
13 PRK04190 glucose-6-phosphate i 99.4 5.2E-12 1.1E-16 100.3 14.4 88 50-140 62-157 (191)
14 TIGR01479 GMP_PMI mannose-1-ph 99.4 2E-12 4.4E-17 115.3 13.0 78 55-140 375-452 (468)
15 PRK09943 DNA-binding transcrip 99.4 2.3E-12 5E-17 101.5 11.5 75 55-138 106-181 (185)
16 COG4101 Predicted mannose-6-ph 99.4 2.9E-12 6.2E-17 93.3 9.5 84 55-143 45-128 (142)
17 PRK15460 cpsB mannose-1-phosph 99.4 5.2E-12 1.1E-16 112.8 11.8 78 55-140 384-461 (478)
18 PF01050 MannoseP_isomer: Mann 99.3 2.6E-11 5.6E-16 93.0 12.3 92 33-140 48-139 (151)
19 PRK11171 hypothetical protein; 99.3 4.7E-11 1E-15 99.4 13.9 76 55-138 60-136 (266)
20 TIGR03214 ura-cupin putative a 99.3 6.7E-11 1.5E-15 98.2 12.1 73 55-136 178-251 (260)
21 PRK11171 hypothetical protein; 99.2 2.7E-10 5.8E-15 94.9 12.9 75 55-138 183-258 (266)
22 TIGR03214 ura-cupin putative a 99.2 2.6E-10 5.7E-15 94.7 12.7 76 55-138 57-133 (260)
23 PF02041 Auxin_BP: Auxin bindi 99.1 7E-10 1.5E-14 83.9 11.2 95 55-150 43-139 (167)
24 TIGR02451 anti_sig_ChrR anti-s 98.9 4.7E-09 1E-13 84.9 8.4 72 56-140 127-198 (215)
25 TIGR03037 anthran_nbaC 3-hydro 98.9 2E-08 4.2E-13 77.4 9.6 66 64-136 36-101 (159)
26 PRK13264 3-hydroxyanthranilate 98.8 2.3E-08 5E-13 78.2 9.2 69 61-136 39-107 (177)
27 PF06560 GPI: Glucose-6-phosph 98.8 6.3E-08 1.4E-12 76.3 11.7 86 51-139 45-146 (182)
28 PF12973 Cupin_7: ChrR Cupin-l 98.8 2E-08 4.3E-13 70.4 7.9 82 35-135 7-88 (91)
29 PF02311 AraC_binding: AraC-li 98.8 2.4E-08 5.2E-13 72.5 6.9 65 65-138 12-76 (136)
30 PF11699 CENP-C_C: Mif2/CENP-C 98.7 1E-07 2.2E-12 66.4 8.4 73 55-136 11-84 (85)
31 PRK15457 ethanolamine utilizat 98.7 3.2E-07 6.9E-12 74.5 11.2 71 55-138 156-226 (233)
32 PRK10371 DNA-binding transcrip 98.6 1.5E-07 3.3E-12 79.5 8.7 61 59-128 29-89 (302)
33 TIGR02272 gentisate_1_2 gentis 98.6 4.4E-07 9.5E-12 77.9 9.7 91 40-138 63-155 (335)
34 PF03079 ARD: ARD/ARD' family; 98.5 8.8E-07 1.9E-11 68.4 9.8 67 69-139 85-151 (157)
35 PF06339 Ectoine_synth: Ectoin 98.5 1.9E-06 4.1E-11 63.6 10.0 80 55-143 34-113 (126)
36 PRK13501 transcriptional activ 98.4 1E-06 2.3E-11 73.5 8.0 56 64-128 26-81 (290)
37 PF05523 FdtA: WxcM-like, C-te 98.4 4.3E-06 9.4E-11 62.6 10.5 95 35-138 14-111 (131)
38 PRK13500 transcriptional activ 98.3 2.3E-06 5E-11 72.5 8.8 57 63-128 55-111 (312)
39 PRK10296 DNA-binding transcrip 98.3 4.1E-06 8.9E-11 69.3 9.7 52 66-126 33-84 (278)
40 COG1791 Uncharacterized conser 98.3 5.3E-06 1.1E-10 64.3 9.5 77 58-138 68-153 (181)
41 COG3435 Gentisate 1,2-dioxygen 98.2 2.7E-06 5.8E-11 71.4 6.4 75 56-138 92-166 (351)
42 PRK13502 transcriptional activ 98.2 6.1E-06 1.3E-10 68.4 8.3 57 63-128 25-81 (282)
43 TIGR02297 HpaA 4-hydroxyphenyl 98.2 4.8E-06 1E-10 69.0 7.5 62 65-134 32-93 (287)
44 COG4297 Uncharacterized protei 98.2 6.5E-06 1.4E-10 61.7 6.5 70 63-138 49-119 (163)
45 PF14499 DUF4437: Domain of un 98.2 1.3E-05 2.9E-10 66.1 9.0 87 36-134 20-106 (251)
46 COG3257 GlxB Uncharacterized p 98.1 3.1E-05 6.8E-10 62.4 10.0 75 56-138 61-136 (264)
47 PRK13503 transcriptional activ 98.1 6.4E-06 1.4E-10 67.9 6.3 55 64-127 23-77 (278)
48 PF06052 3-HAO: 3-hydroxyanthr 98.1 4.5E-05 9.7E-10 58.0 10.0 65 59-128 36-100 (151)
49 PF05899 Cupin_3: Protein of u 98.0 2.2E-05 4.9E-10 53.0 6.6 61 55-125 6-66 (74)
50 TIGR02272 gentisate_1_2 gentis 98.0 3.2E-05 7E-10 66.4 8.2 66 60-136 254-319 (335)
51 PF06249 EutQ: Ethanolamine ut 97.8 7.2E-05 1.6E-09 57.4 7.2 71 55-138 76-146 (152)
52 COG4766 EutQ Ethanolamine util 97.8 0.00031 6.6E-09 53.7 9.4 71 55-138 99-169 (176)
53 KOG2107 Uncharacterized conser 97.7 8E-05 1.7E-09 57.4 6.1 73 58-134 65-147 (179)
54 COG3806 ChrR Transcriptional a 97.6 0.00031 6.6E-09 55.8 7.6 91 32-140 109-199 (216)
55 COG3450 Predicted enzyme of th 97.5 0.0011 2.5E-08 48.6 9.2 63 55-127 44-106 (116)
56 COG3257 GlxB Uncharacterized p 97.4 0.001 2.3E-08 53.7 8.4 72 55-135 181-253 (264)
57 PF05995 CDO_I: Cysteine dioxy 97.4 0.0047 1E-07 48.4 11.9 86 55-140 74-165 (175)
58 COG3435 Gentisate 1,2-dioxygen 97.3 0.00097 2.1E-08 56.3 7.0 65 62-136 267-331 (351)
59 PF14499 DUF4437: Domain of un 97.2 0.0006 1.3E-08 56.4 4.6 100 27-138 142-245 (251)
60 PF02678 Pirin: Pirin; InterP 96.9 0.0046 9.9E-08 44.8 6.5 65 66-137 39-106 (107)
61 TIGR01221 rmlC dTDP-4-dehydror 96.6 0.081 1.8E-06 41.6 12.4 76 62-138 50-132 (176)
62 PRK10572 DNA-binding transcrip 96.6 0.0087 1.9E-07 49.7 7.3 49 71-128 44-92 (290)
63 COG1741 Pirin-related protein 96.6 0.024 5.3E-07 47.6 9.8 72 61-139 49-124 (276)
64 PF13621 Cupin_8: Cupin-like d 96.5 0.018 4E-07 46.2 8.6 69 61-130 135-236 (251)
65 COG1898 RfbC dTDP-4-dehydrorha 96.5 0.024 5.2E-07 44.5 8.5 67 64-130 53-125 (173)
66 PF08007 Cupin_4: Cupin superf 96.3 0.051 1.1E-06 46.4 10.4 66 61-127 118-200 (319)
67 PF00908 dTDP_sugar_isom: dTDP 96.2 0.075 1.6E-06 41.8 10.2 79 59-138 46-132 (176)
68 KOG3995 3-hydroxyanthranilate 96.2 0.0094 2E-07 48.0 4.9 66 55-126 33-98 (279)
69 PF04209 HgmA: homogentisate 1 96.1 0.04 8.7E-07 48.9 8.9 54 73-136 142-195 (424)
70 PF12852 Cupin_6: Cupin 96.1 0.014 3.1E-07 45.5 5.4 43 78-126 36-78 (186)
71 PF07385 DUF1498: Protein of u 96.0 0.15 3.2E-06 41.5 11.1 74 60-135 91-184 (225)
72 PF05726 Pirin_C: Pirin C-term 95.8 0.11 2.4E-06 37.0 8.7 93 59-167 2-95 (104)
73 PRK05341 homogentisate 1,2-dio 95.5 0.16 3.6E-06 45.1 10.3 55 72-135 149-203 (438)
74 TIGR01015 hmgA homogentisate 1 95.1 0.24 5.3E-06 43.9 10.1 53 73-135 144-196 (429)
75 PLN02658 homogentisate 1,2-dio 95.0 0.28 6.2E-06 43.6 10.2 55 72-135 142-196 (435)
76 PF05118 Asp_Arg_Hydrox: Aspar 95.0 0.089 1.9E-06 40.6 6.3 70 57-134 81-155 (163)
77 PRK09685 DNA-binding transcrip 95.0 0.19 4.1E-06 41.8 8.8 66 55-128 44-114 (302)
78 KOG2757 Mannose-6-phosphate is 94.9 0.29 6.3E-06 42.6 9.6 65 55-127 332-396 (411)
79 PF06865 DUF1255: Protein of u 94.8 0.36 7.7E-06 34.2 8.3 65 61-136 28-92 (94)
80 PRK10579 hypothetical protein; 94.5 0.37 8E-06 34.1 7.7 63 63-136 30-92 (94)
81 COG3822 ABC-type sugar transpo 94.3 0.19 4.1E-06 40.0 6.7 68 59-127 89-177 (225)
82 PRK12335 tellurite resistance 94.2 0.24 5.2E-06 41.4 7.7 63 64-128 19-83 (287)
83 PF02373 JmjC: JmjC domain, hy 94.1 0.14 3.1E-06 36.2 5.3 28 102-129 80-107 (114)
84 PF07847 DUF1637: Protein of u 93.9 0.42 9.2E-06 38.3 8.1 84 55-139 43-143 (200)
85 PF09313 DUF1971: Domain of un 93.6 0.77 1.7E-05 31.6 8.0 61 67-128 14-75 (82)
86 PF06172 Cupin_5: Cupin superf 93.4 2.6 5.5E-05 31.9 11.3 103 34-140 13-128 (139)
87 PF11142 DUF2917: Protein of u 93.4 0.53 1.2E-05 30.7 6.6 57 61-125 2-58 (63)
88 PF14525 AraC_binding_2: AraC- 93.2 1.1 2.4E-05 33.4 9.2 46 77-130 55-100 (172)
89 KOG3706 Uncharacterized conser 93.0 0.097 2.1E-06 47.1 3.4 64 63-127 324-405 (629)
90 PRK00924 5-keto-4-deoxyuronate 93.0 0.76 1.7E-05 38.7 8.5 82 55-141 174-261 (276)
91 PF04962 KduI: KduI/IolB famil 92.9 2.4 5.3E-05 35.3 11.4 96 39-141 136-247 (261)
92 PF13759 2OG-FeII_Oxy_5: Putat 92.8 0.32 7E-06 34.2 5.3 67 62-130 6-94 (101)
93 COG2850 Uncharacterized conser 92.7 0.27 5.8E-06 42.8 5.5 65 62-127 125-203 (383)
94 PRK15131 mannose-6-phosphate i 92.5 1 2.3E-05 39.7 9.1 59 55-124 320-378 (389)
95 PLN02288 mannose-6-phosphate i 92.5 0.46 1E-05 41.9 6.9 59 55-120 333-391 (394)
96 TIGR02466 conserved hypothetic 92.4 0.59 1.3E-05 37.5 6.9 68 61-130 101-190 (201)
97 TIGR00218 manA mannose-6-phosp 91.8 1.5 3.3E-05 37.0 9.1 59 55-124 234-292 (302)
98 COG3508 HmgA Homogentisate 1,2 91.8 2.4 5.1E-05 37.0 10.1 55 71-134 140-194 (427)
99 COG5553 Predicted metal-depend 91.0 1.4 3.1E-05 34.2 7.3 72 56-129 73-147 (191)
100 PRK09391 fixK transcriptional 90.6 2.7 6E-05 33.7 9.1 123 56-181 36-203 (230)
101 PRK11753 DNA-binding transcrip 90.4 2.9 6.2E-05 32.6 8.9 120 59-181 21-192 (211)
102 PHA02984 hypothetical protein; 90.0 3.7 8E-05 34.4 9.3 54 80-138 96-149 (286)
103 PHA02890 hypothetical protein; 88.2 5.4 0.00012 33.2 9.0 52 80-138 95-146 (278)
104 PRK00924 5-keto-4-deoxyuronate 88.0 5 0.00011 33.8 8.9 70 61-138 57-129 (276)
105 PF04962 KduI: KduI/IolB famil 86.5 6.1 0.00013 32.9 8.7 73 55-138 26-107 (261)
106 PF00027 cNMP_binding: Cyclic 85.8 2 4.2E-05 28.2 4.6 49 62-113 3-51 (91)
107 PRK13918 CRP/FNR family transc 85.4 5 0.00011 31.0 7.4 118 60-181 8-173 (202)
108 COG1741 Pirin-related protein 85.2 22 0.00047 30.0 11.5 99 49-167 167-267 (276)
109 COG1482 ManA Phosphomannose is 85.1 3.3 7.2E-05 35.5 6.5 57 55-122 241-297 (312)
110 COG1482 ManA Phosphomannose is 84.6 0.85 1.8E-05 39.0 2.8 21 104-124 159-179 (312)
111 PHA00672 hypothetical protein 84.5 6.3 0.00014 29.5 6.9 71 54-134 45-115 (152)
112 TIGR00218 manA mannose-6-phosp 84.0 0.84 1.8E-05 38.6 2.5 19 104-122 152-170 (302)
113 PF04622 ERG2_Sigma1R: ERG2 an 83.7 3 6.5E-05 33.9 5.5 92 68-173 113-206 (216)
114 cd00038 CAP_ED effector domain 82.0 7.1 0.00015 26.1 6.3 54 59-115 18-71 (115)
115 PRK15131 mannose-6-phosphate i 81.0 1.6 3.4E-05 38.5 3.2 21 104-124 238-258 (389)
116 smart00100 cNMP Cyclic nucleot 80.8 8.7 0.00019 25.7 6.4 54 60-116 19-72 (120)
117 COG3123 Uncharacterized protei 80.6 6.9 0.00015 27.2 5.5 43 77-125 41-83 (94)
118 PRK15186 AraC family transcrip 80.5 6.3 0.00014 33.3 6.5 47 77-130 38-84 (291)
119 COG3542 Uncharacterized conser 78.6 28 0.00061 26.8 14.6 101 34-140 18-130 (162)
120 PRK10402 DNA-binding transcrip 78.1 11 0.00025 29.9 7.2 54 60-116 33-86 (226)
121 COG3718 IolB Uncharacterized e 77.7 27 0.00059 28.9 9.0 73 55-128 28-102 (270)
122 PF13640 2OG-FeII_Oxy_3: 2OG-F 77.6 6.2 0.00013 27.0 4.8 28 107-134 66-94 (100)
123 KOG2130 Phosphatidylserine-spe 76.6 4.8 0.0001 34.7 4.6 44 102-145 262-305 (407)
124 COG3717 KduI 5-keto 4-deoxyuro 74.6 24 0.00052 29.3 7.9 85 52-141 173-263 (278)
125 PRK09392 ftrB transcriptional 72.0 14 0.00031 29.3 6.2 73 60-136 32-107 (236)
126 PLN02868 acyl-CoA thioesterase 71.5 15 0.00033 32.3 6.8 53 59-115 32-84 (413)
127 PF04115 Ureidogly_hydro: Urei 70.1 23 0.0005 27.3 6.8 68 70-137 73-144 (165)
128 PF06719 AraC_N: AraC-type tra 69.9 32 0.0007 26.0 7.5 53 77-137 23-78 (155)
129 KOG2131 Uncharacterized conser 67.2 3.2 7E-05 36.4 1.5 63 65-129 207-294 (427)
130 PF00325 Crp: Bacterial regula 67.1 4.5 9.7E-05 22.8 1.6 24 158-181 3-26 (32)
131 PRK03606 ureidoglycolate hydro 67.0 50 0.0011 25.6 8.0 66 70-136 72-140 (162)
132 PLN02288 mannose-6-phosphate i 66.4 4.8 0.0001 35.6 2.5 21 104-124 252-272 (394)
133 PRK11161 fumarate/nitrate redu 66.4 35 0.00077 26.9 7.4 53 61-116 40-92 (235)
134 smart00153 VHP Villin headpiec 61.7 10 0.00022 21.9 2.5 22 158-179 2-23 (36)
135 COG0664 Crp cAMP-binding prote 59.5 37 0.00081 25.6 6.2 57 58-117 23-79 (214)
136 PF02209 VHP: Villin headpiece 58.8 11 0.00023 21.8 2.2 22 158-179 2-23 (36)
137 PRK14585 pgaD putative PGA bio 56.9 15 0.00032 27.8 3.3 26 155-180 87-112 (137)
138 KOG1356 Putative transcription 56.0 4.2 9E-05 39.1 0.3 56 64-127 763-823 (889)
139 PF13384 HTH_23: Homeodomain-l 54.9 16 0.00035 21.7 2.8 24 158-181 18-41 (50)
140 PF13999 MarB: MarB protein 52.3 5.8 0.00013 26.1 0.4 22 1-24 5-26 (66)
141 PF13994 PgaD: PgaD-like prote 47.9 26 0.00057 26.1 3.5 24 157-180 100-123 (138)
142 PRK10202 ebgC cryptic beta-D-g 47.8 1.2E+02 0.0026 22.9 8.9 55 70-124 58-127 (149)
143 PRK14584 hmsS hemin storage sy 47.6 25 0.00054 27.1 3.3 26 155-180 96-121 (153)
144 TIGR03697 NtcA_cyano global ni 47.6 49 0.0011 25.0 5.1 25 157-181 143-167 (193)
145 PRK05467 Fe(II)-dependent oxyg 46.9 62 0.0013 26.4 5.7 25 103-127 141-165 (226)
146 PLN03192 Voltage-dependent pot 46.6 44 0.00095 32.2 5.6 51 59-113 398-448 (823)
147 PF04074 DUF386: Domain of unk 45.4 1.3E+02 0.0028 22.6 8.2 57 68-124 60-134 (153)
148 TIGR00022 uncharacterized prot 45.4 1.3E+02 0.0027 22.4 7.3 55 69-123 61-133 (142)
149 PF01238 PMI_typeI: Phosphoman 45.2 16 0.00034 32.0 2.2 22 104-125 251-272 (373)
150 PF02787 CPSase_L_D3: Carbamoy 44.5 23 0.00051 26.0 2.7 23 158-180 73-95 (123)
151 KOG4281 Uncharacterized conser 43.4 11 0.00024 30.7 0.8 39 54-92 73-111 (236)
152 PF05962 HutD: HutD; InterPro 42.9 35 0.00077 26.7 3.7 47 80-136 138-184 (184)
153 PF05721 PhyH: Phytanoyl-CoA d 42.8 49 0.0011 24.8 4.4 28 103-130 180-208 (211)
154 cd06919 Asp_decarbox Aspartate 40.0 22 0.00048 25.8 1.9 36 77-119 51-90 (111)
155 KOG0498 K+-channel ERG and rel 39.6 48 0.001 31.8 4.5 48 62-113 446-493 (727)
156 PRK13395 ureidoglycolate hydro 39.6 1.7E+02 0.0036 22.9 6.9 67 70-136 72-141 (171)
157 PF13545 HTH_Crp_2: Crp-like h 38.9 25 0.00055 22.6 2.0 24 158-181 29-52 (76)
158 COG2731 EbgC Beta-galactosidas 38.3 1.8E+02 0.004 22.3 8.1 65 64-128 56-137 (154)
159 TIGR00223 panD L-aspartate-alp 36.1 27 0.00057 26.0 1.8 36 77-119 52-91 (126)
160 PF02796 HTH_7: Helix-turn-hel 33.9 57 0.0012 19.2 2.8 23 158-180 22-44 (45)
161 KOG0501 K+-channel KCNQ [Inorg 32.6 25 0.00053 33.1 1.4 80 19-113 538-618 (971)
162 PRK05449 aspartate alpha-decar 32.3 34 0.00073 25.5 1.9 36 77-119 52-91 (126)
163 PRK11396 hypothetical protein; 32.0 2.6E+02 0.0057 22.2 13.1 86 32-127 13-99 (191)
164 smart00550 Zalpha Z-DNA-bindin 31.9 53 0.0011 21.2 2.6 24 157-180 22-45 (68)
165 PF13348 Y_phosphatase3C: Tyro 31.2 35 0.00076 21.8 1.6 23 159-181 45-67 (68)
166 PF01987 AIM24: Mitochondrial 30.7 1.1E+02 0.0024 24.0 4.8 44 79-126 131-174 (215)
167 KOG1417 Homogentisate 1,2-diox 30.6 3.6E+02 0.0078 23.4 9.5 61 70-138 148-208 (446)
168 TIGR02408 ectoine_ThpD ectoine 27.5 57 0.0012 27.0 2.7 34 105-138 213-248 (277)
169 PRK02290 3-dehydroquinate synt 27.1 3.6E+02 0.0079 23.5 7.5 82 35-122 250-333 (344)
170 cd04762 HTH_MerR-trunc Helix-T 26.5 1E+02 0.0022 17.3 3.0 21 159-179 2-22 (49)
171 PF04831 Popeye: Popeye protei 26.5 2.6E+02 0.0057 21.5 5.9 47 59-113 29-76 (153)
172 TIGR03027 pepcterm_export puta 25.6 49 0.0011 25.2 1.8 16 104-119 149-164 (165)
173 PF08279 HTH_11: HTH domain; 25.2 74 0.0016 19.1 2.3 23 156-178 14-36 (55)
174 PF12988 DUF3872: Domain of un 24.8 3.1E+02 0.0067 20.7 8.6 53 82-144 72-125 (137)
175 PRK10106 hypothetical protein; 24.8 32 0.0007 22.5 0.6 22 2-25 3-24 (65)
176 cd04761 HTH_MerR-SF Helix-Turn 24.1 1.2E+02 0.0025 17.4 3.0 23 158-180 1-23 (49)
177 COG3128 PiuC Uncharacterized i 24.1 1.6E+02 0.0035 23.7 4.4 33 104-136 145-179 (229)
178 COG1476 Predicted transcriptio 24.0 1.1E+02 0.0024 20.2 3.0 22 158-179 15-36 (68)
179 COG3615 TehB Uncharacterized p 23.9 2.7E+02 0.0059 19.8 6.9 47 81-128 40-86 (99)
180 KOG3416 Predicted nucleic acid 23.0 1.7E+02 0.0037 21.9 4.1 65 49-125 12-80 (134)
181 PF13412 HTH_24: Winged helix- 22.9 1.3E+02 0.0029 17.5 3.1 26 155-180 15-40 (48)
182 TIGR01762 chlorin-enz chlorina 22.8 1.4E+02 0.003 25.0 4.2 28 103-130 209-237 (288)
183 PF13518 HTH_28: Helix-turn-he 22.7 1.1E+02 0.0023 17.8 2.7 24 158-181 13-36 (52)
184 PF04545 Sigma70_r4: Sigma-70, 22.3 1.4E+02 0.003 17.6 3.1 23 158-180 21-43 (50)
185 TIGR01764 excise DNA binding d 21.7 1.4E+02 0.0031 16.7 3.1 22 158-179 2-23 (49)
186 PF08671 SinI: Anti-repressor 21.5 99 0.0021 17.1 2.0 16 164-179 12-27 (30)
187 cd00092 HTH_CRP helix_turn_hel 21.3 1.2E+02 0.0026 18.5 2.8 24 157-180 25-48 (67)
188 PF02080 TrkA_C: TrkA-C domain 21.3 1.6E+02 0.0034 18.4 3.4 31 77-116 27-57 (71)
189 PF04539 Sigma70_r3: Sigma-70 20.8 1.1E+02 0.0023 19.8 2.6 23 157-179 20-42 (78)
190 PHA02095 hypothetical protein 20.7 1.7E+02 0.0037 19.7 3.4 22 72-93 19-40 (84)
191 PF13613 HTH_Tnp_4: Helix-turn 20.6 99 0.0021 18.8 2.2 23 158-180 20-42 (53)
192 PF01959 DHQS: 3-dehydroquinat 20.4 5.7E+02 0.012 22.4 7.5 82 36-123 261-344 (354)
193 PF12728 HTH_17: Helix-turn-he 20.2 1.5E+02 0.0033 17.4 3.0 22 158-179 2-23 (51)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.91 E-value=1.3e-23 Score=181.60 Aligned_cols=139 Identities=19% Similarity=0.280 Sum_probs=124.4
Q ss_pred ccCCCeEEEEeecCCCCCCccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcE
Q 048538 33 ANRLGFSVKIANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDV 112 (181)
Q Consensus 33 ~~~~g~~~~~~~~~~~p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~ 112 (181)
....||+++.++...+|..+ ++++.+++++||++.++|||++++|++||++|++++++.+.+ ++.+.+.+++||+
T Consensus 224 ~~~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~---g~~~~~~l~~GD~ 298 (367)
T TIGR03404 224 KQVPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAG---GNARTFDYQAGDV 298 (367)
T ss_pred eecCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecC---CcEEEEEECCCCE
Confidence 35678889999999999877 578999999999999999999999999999999999987543 3345789999999
Q ss_pred EEEcCCCeEEEEeCCCCcEEEEEEEcCCCCceeeeecchhcCCCCCCHHHHHHHcCCCHHHHHHHHhc
Q 048538 113 FVFPIGLIHFQFNIGKTNAVAIAALSSQNPGVITIANSVFGANPPINPDFLAKAFQLDVDVVKDLEAK 180 (181)
Q Consensus 113 i~ip~g~~H~~~N~g~~~~~~l~v~~~~~~g~~~~~~s~~~~~~~~~~e~l~~~~~v~~~~~~~~~~~ 180 (181)
++||+|..|+++|.|+++++++++++++.++.+.++++ ++. .|+++|++.|+++.+.+++|+++
T Consensus 299 ~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~-l~~---~p~~vl~~~~~~~~~~~~~l~~~ 362 (367)
T TIGR03404 299 GYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQW-LAL---TPPQLVAAHLNLDDEVIDSLKKE 362 (367)
T ss_pred EEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHH-Hhh---CCHHHHHHHhCcCHHHHHhcccc
Confidence 99999999999999999999999999999999988765 554 99999999999999999999864
No 2
>PLN00212 glutelin; Provisional
Probab=99.91 E-value=2.3e-23 Score=184.73 Aligned_cols=155 Identities=19% Similarity=0.323 Sum_probs=126.5
Q ss_pred CCeeeecCCCCC--CccCC---CeEEEEeecCCCCCCccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEe
Q 048538 20 QDICVAIDEPKN--AANRL---GFSVKIANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVT 94 (181)
Q Consensus 20 ~~~~~~~~~~~~--~~~~~---g~~~~~~~~~~~p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~ 94 (181)
++.|+- |+|++ |.++. || +++.|....+.+...++++.+++|+|++...||+|. +.+++||++|++.+++..
T Consensus 41 ~~~C~~-~~l~a~ep~~ri~se~G-~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP~y~n-a~~liyV~qG~G~~G~v~ 117 (493)
T PLN00212 41 FRECRF-DRLQAFEPLRKVRSEAG-VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLPRYSN-TPGLVYIIQGRGSMGLTF 117 (493)
T ss_pred CCcccc-cccccCCCchhhcccCc-eeeecCCCChhhcccceEEEEEEecCCcccCccccC-CCeEEEEEeCeEEEEEEe
Confidence 688985 88987 55444 55 889999999999999999999999999999999997 999999999999999985
Q ss_pred ccC-C---------------------CCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcCCC--------Cce
Q 048538 95 SNE-L---------------------NNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALSSQN--------PGV 144 (181)
Q Consensus 95 ~~~-~---------------------~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v~~~~~--------~g~ 144 (181)
++- + ......+.|++||++.||+|++||++|.|+++++.+++++..+ +..
T Consensus 118 pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~ 197 (493)
T PLN00212 118 PGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQRE 197 (493)
T ss_pred CCCcchhhhhcccccccccccccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcce
Confidence 320 0 0000126899999999999999999999999998888887332 223
Q ss_pred eeee-------------------cchhcCCCCCCHHHHHHHcCCCHHHHHHHHhc
Q 048538 145 ITIA-------------------NSVFGANPPINPDFLAKAFQLDVDVVKDLEAK 180 (181)
Q Consensus 145 ~~~~-------------------~s~~~~~~~~~~e~l~~~~~v~~~~~~~~~~~ 180 (181)
|.++ .++|++ |++++|+.+|+|++++++||.++
T Consensus 198 F~LaG~~~~~~~~~~~~~~~~~~~nifsG---F~~e~La~Afnv~~e~~~klq~~ 249 (493)
T PLN00212 198 FLLAGNNNRQQQVYGRSIEQHSGQNIFSG---FSTELLSEALGINAQVAKRLQSQ 249 (493)
T ss_pred eeccCCCccccccccccccccccCchhhc---CCHHHHHHHHCCCHHHHHHHhcc
Confidence 3332 349998 99999999999999999999753
No 3
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.86 E-value=3.7e-20 Score=140.86 Aligned_cols=138 Identities=38% Similarity=0.568 Sum_probs=113.5
Q ss_pred CccCCCeEEEEeecCCCCCCccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCc
Q 048538 32 AANRLGFSVKIANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGD 111 (181)
Q Consensus 32 ~~~~~g~~~~~~~~~~~p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD 111 (181)
..+..||++..++...+|.++...+.+.+++++||+..++|+|++..|++||++|++++.+.+.. +++...+.+++||
T Consensus 6 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~--~~~~~~~~l~~GD 83 (146)
T smart00835 6 DFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPN--GNKVYDARLREGD 83 (146)
T ss_pred cccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCC--CCeEEEEEecCCC
Confidence 34667787888888888999888899999999999999999998788999999999999986531 1233468899999
Q ss_pred EEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCce--eeeecchhcCCCCCCHHHHHHHcCCCHHHH
Q 048538 112 VFVFPIGLIHFQFNIGKTNAVAIAALSSQNPGV--ITIANSVFGANPPINPDFLAKAFQLDVDVV 174 (181)
Q Consensus 112 ~i~ip~g~~H~~~N~g~~~~~~l~v~~~~~~g~--~~~~~s~~~~~~~~~~e~l~~~~~v~~~~~ 174 (181)
++++|+|+.|++.|.++++++++++.+...... +....++|++ |++++++++|+++.+++
T Consensus 84 ~~~ip~g~~H~~~n~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 84 VFVVPQGHPHFQVNSGDENLEFVAFNTNDPNRRFFLAGRNSVLRG---LPPEVLAAAFGVSAEEV 145 (146)
T ss_pred EEEECCCCEEEEEcCCCCCEEEEEEecCCCCceeEeecccchhhc---CCHHHHHHHhCcChHHc
Confidence 999999999999999999999996544332222 2233578888 99999999999999765
No 4
>PLN00212 glutelin; Provisional
Probab=99.86 E-value=2.3e-20 Score=165.66 Aligned_cols=143 Identities=22% Similarity=0.298 Sum_probs=124.3
Q ss_pred CccCCCeEEEEeecCCCCCCccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCc
Q 048538 32 AANRLGFSVKIANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGD 111 (181)
Q Consensus 32 ~~~~~g~~~~~~~~~~~p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD 111 (181)
+++..+|+++.++..++|+|+..++++.++.|.||++.+||||+++.+++||++|++.+++++.+ |++.....|++||
T Consensus 324 ~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~--g~~vf~~~L~~Gd 401 (493)
T PLN00212 324 TYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNN--GKTVFNGVLRPGQ 401 (493)
T ss_pred ccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCC--CCEEEEEEEcCCC
Confidence 56888999999999999999999999999999999999999999999999999999999998753 3555566899999
Q ss_pred EEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCceee--eecchhcCCCCCCHHHHHHHcCCCHHHHHHHHhc
Q 048538 112 VFVFPIGLIHFQFNIGKTNAVAIAALSSQNPGVIT--IANSVFGANPPINPDFLAKAFQLDVDVVKDLEAK 180 (181)
Q Consensus 112 ~i~ip~g~~H~~~N~g~~~~~~l~v~~~~~~g~~~--~~~s~~~~~~~~~~e~l~~~~~v~~~~~~~~~~~ 180 (181)
+++||+|.+|...+. ++...++++.+.+++-... ...++|++ +|+++|+++|+++++++++|+.+
T Consensus 402 vfVVPqg~~v~~~A~-~egfe~v~F~tna~~~~s~laG~~Sv~~a---lp~eVla~Af~is~eea~~lk~n 468 (493)
T PLN00212 402 LLIIPQHYAVLKKAE-REGCQYIAFKTNANAMVSHIAGKNSIFRA---LPVDVIANAYRISREEARRLKNN 468 (493)
T ss_pred EEEECCCCeEEEeec-CCceEEEEeecCCCccccccccHHHHHHh---CCHHHHHHHcCCCHHHHHHHHhc
Confidence 999999999997774 5668888877765532222 23689997 99999999999999999999976
No 5
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.85 E-value=2.8e-20 Score=160.85 Aligned_cols=134 Identities=21% Similarity=0.277 Sum_probs=113.8
Q ss_pred CCeEEEEeecCCCCCCccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEE
Q 048538 36 LGFSVKIANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVF 115 (181)
Q Consensus 36 ~g~~~~~~~~~~~p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~i 115 (181)
.||++++++..++|+++. +++.+++++||+..++|||. ..|++||++|++++++.+.+ ++.....|++||+++|
T Consensus 49 ~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~~---g~~~~~~L~~GD~~~f 122 (367)
T TIGR03404 49 NGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDEN---GRNYIDDVGAGDLWYF 122 (367)
T ss_pred cCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcCC---CcEEEeEECCCCEEEE
Confidence 588899999999999984 68899999999999999998 88999999999999997542 3333346999999999
Q ss_pred cCCCeEEEEeCCCCcEEEEEEEcCCC---CceeeeecchhcCCCCCCHHHHHHHcCCCHHHHHHHHhc
Q 048538 116 PIGLIHFQFNIGKTNAVAIAALSSQN---PGVITIANSVFGANPPINPDFLAKAFQLDVDVVKDLEAK 180 (181)
Q Consensus 116 p~g~~H~~~N~g~~~~~~l~v~~~~~---~g~~~~~~s~~~~~~~~~~e~l~~~~~v~~~~~~~~~~~ 180 (181)
|+|.+|+++|. +++++++++++... +..+.+.+ +++. +|.++|+++|+++++++++|+++
T Consensus 123 P~g~~H~~~n~-~~~~~~l~vf~~~~f~~~~~~~~~~-~l~~---~p~~Vla~~f~l~~~~~~~l~~~ 185 (367)
T TIGR03404 123 PPGIPHSLQGL-DEGCEFLLVFDDGNFSEDGTFLVTD-WLAH---TPKDVLAKNFGVPESAFDNLPLK 185 (367)
T ss_pred CCCCeEEEEEC-CCCeEEEEEeCCcccCCcceeeHHH-HHHh---CCHHHHHHHhCCCHHHHHhcccc
Confidence 99999999998 46788888887653 44555655 4675 99999999999999999999875
No 6
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.84 E-value=4.6e-20 Score=140.01 Aligned_cols=129 Identities=33% Similarity=0.491 Sum_probs=101.6
Q ss_pred CCCccCCCeEEEEeecCCCCCCc-cCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCC-----eeE
Q 048538 30 KNAANRLGFSVKIANVEQIPGLN-TLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNN-----TLI 103 (181)
Q Consensus 30 ~~~~~~~g~~~~~~~~~~~p~l~-~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~-----~~~ 103 (181)
+...+..+|+++.++..++|.+. ..++.+..+.++||++..|||| ++.|+.||++|++++++..++ + +..
T Consensus 7 ~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~---~~~~~~~~~ 82 (144)
T PF00190_consen 7 RPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPG---GPQEEFRDF 82 (144)
T ss_dssp SEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETT---CSSSEEEEE
T ss_pred CCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecC---Cccccceee
Confidence 33445667889999999999443 3355666677899999999999 599999999999999998763 2 123
Q ss_pred eEE--ecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCceeeeecchhcCCCCCCHHHHHHHcCCCHHHH
Q 048538 104 AKV--LKKGDVFVFPIGLIHFQFNIGKTNAVAIAALSSQNPGVITIANSVFGANPPINPDFLAKAFQLDVDVV 174 (181)
Q Consensus 104 ~~~--l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v~~~~~~g~~~~~~s~~~~~~~~~~e~l~~~~~v~~~~~ 174 (181)
... +++||++++|+|.+||+.|.++.+...+.++...++... +++++++++|+++.++.
T Consensus 83 ~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~------------l~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 83 SQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ------------LPPEVLAKAFFLSGEEV 143 (144)
T ss_dssp EEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE------------SSHHHHHHHEESSHHHH
T ss_pred eceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc------------CCcHHHHHhcCCCcCcC
Confidence 454 999999999999999999999777777777765554432 88999999999999875
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.65 E-value=1.4e-15 Score=121.00 Aligned_cols=135 Identities=19% Similarity=0.271 Sum_probs=106.8
Q ss_pred cCCCeEEEEeecCCCCCCccCceEEEEEEEcCCCcCCCccCCCCcE--EEEEEeCeEEEEEEeccCCCCeeEeEEecCCc
Q 048538 34 NRLGFSVKIANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATD--ILAVLEGTLYVGFVTSNELNNTLIAKVLKKGD 111 (181)
Q Consensus 34 ~~~g~~~~~~~~~~~p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E--~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD 111 (181)
...||.++-.....+|+. .-..+.+.||++...|||++.+| +.|||+|++.+.+...+ .+..+..+++||
T Consensus 63 ~~~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~---G~~~v~~~~~Gd 134 (209)
T COG2140 63 GERGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPE---GEARVIAVRAGD 134 (209)
T ss_pred cccCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCC---CcEEEEEecCCc
Confidence 344777777777778863 34567899999999999998888 99999999999997654 345678899999
Q ss_pred EEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCceeeeecchhcCCCCCCHHHHHHHcCCCHHHHHHHHhc
Q 048538 112 VFVFPIGLIHFQFNIGKTNAVAIAALSSQNPGVITIANSVFGANPPINPDFLAKAFQLDVDVVKDLEAK 180 (181)
Q Consensus 112 ~i~ip~g~~H~~~N~g~~~~~~l~v~~~~~~g~~~~~~s~~~~~~~~~~e~l~~~~~v~~~~~~~~~~~ 180 (181)
+++||++.-|+..|+|+++++++.++..+......+-.. ..+ .+..+++..|+.+.+..+..+.|
T Consensus 135 ~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~-~~~---~~~~~~~~~~~~~~~~~D~p~~~ 199 (209)
T COG2140 135 VIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAW-LGG---MPPVLVENGLNKNPKYVDVPRIK 199 (209)
T ss_pred EEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeeh-hcc---CCceeeccccccCcccccCcccc
Confidence 999999999999999999999999998776666544443 333 77788888888776665555444
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.59 E-value=4.6e-15 Score=98.52 Aligned_cols=70 Identities=29% Similarity=0.404 Sum_probs=62.7
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 048538 60 RIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAAL 137 (181)
Q Consensus 60 ~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v~ 137 (181)
+++++||+..++|+|+...|++||++|++++.++ ++ .+.+++||.+++|+|+.|.+.|.+++++++++|+
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~------~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVD------GE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEET------TE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEEc------cE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 5789999999999999444999999999999864 22 7999999999999999999999999999999875
No 9
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.54 E-value=1.8e-13 Score=101.92 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=68.9
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEE-EEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEE
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVG-FVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVA 133 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~-v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~ 133 (181)
.+.+.+++++||+..+.|+|. ..|++|||+|++++. ++++ +.+.|++||++++|++.+|++.|. +++++
T Consensus 34 ~~~~~~~~l~pG~~~~~h~h~-~~E~~yVL~G~~~~~~i~~g-------~~~~L~aGD~i~~~~~~~H~~~N~--e~~~~ 103 (125)
T PRK13290 34 GFSFHETTIYAGTETHLHYKN-HLEAVYCIEGEGEVEDLATG-------EVHPIRPGTMYALDKHDRHYLRAG--EDMRL 103 (125)
T ss_pred CEEEEEEEECCCCcccceeCC-CEEEEEEEeCEEEEEEcCCC-------EEEEeCCCeEEEECCCCcEEEEcC--CCEEE
Confidence 667888999999999999997 479999999999998 5312 269999999999999999999997 89999
Q ss_pred EEEEcCCCCce
Q 048538 134 IAALSSQNPGV 144 (181)
Q Consensus 134 l~v~~~~~~g~ 144 (181)
+++++.+.+|.
T Consensus 104 l~v~tP~~~~~ 114 (125)
T PRK13290 104 VCVFNPPLTGR 114 (125)
T ss_pred EEEECCCCCCc
Confidence 99988655543
No 10
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=1.3e-13 Score=102.78 Aligned_cols=79 Identities=30% Similarity=0.237 Sum_probs=71.3
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAI 134 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l 134 (181)
..++.++.++||....+|.|.+..|++||++|++.+.+++ ....|++||+++||+|++|+++|.|..++.++
T Consensus 35 ~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~--------~~~~v~~gd~~~iP~g~~H~~~N~G~~~L~li 106 (127)
T COG0662 35 RYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGG--------EEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLI 106 (127)
T ss_pred cEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECC--------EEEEecCCCEEEECCCCcEEEEcCCCcceEEE
Confidence 5678889999999988888887899999999999999862 26999999999999999999999999999999
Q ss_pred EEEcCCC
Q 048538 135 AALSSQN 141 (181)
Q Consensus 135 ~v~~~~~ 141 (181)
.+.....
T Consensus 107 ei~~p~~ 113 (127)
T COG0662 107 EVQSPPY 113 (127)
T ss_pred EEecCCc
Confidence 9987554
No 11
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.51 E-value=1.9e-13 Score=101.84 Aligned_cols=80 Identities=29% Similarity=0.399 Sum_probs=69.0
Q ss_pred ccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcE
Q 048538 52 NTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNA 131 (181)
Q Consensus 52 ~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~ 131 (181)
.+..+.+..++++||+..++|.|+...+.+|||+|+++++++ + + .+.+++||++++|+|+.|++.|.++.+.
T Consensus 39 ~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~-g----~---~~~l~~Gd~i~ip~g~~H~~~a~~~~~~ 110 (131)
T COG1917 39 EGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE-G----E---KKELKAGDVIIIPPGVVHGLKAVEDEPM 110 (131)
T ss_pred CCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec-C----C---ceEecCCCEEEECCCCeeeeccCCCCce
Confidence 344677889999999999999998677999999999999986 2 2 6999999999999999999999988776
Q ss_pred EEEEEEcC
Q 048538 132 VAIAALSS 139 (181)
Q Consensus 132 ~~l~v~~~ 139 (181)
.+|+++..
T Consensus 111 ~~l~v~~~ 118 (131)
T COG1917 111 VLLLVFPL 118 (131)
T ss_pred eEEEEeee
Confidence 66666654
No 12
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.46 E-value=5.4e-13 Score=101.44 Aligned_cols=93 Identities=20% Similarity=0.212 Sum_probs=75.0
Q ss_pred cCCCCCCccCceEEEEEEEcCCCc-CCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCC--CeE
Q 048538 45 VEQIPGLNTLGISAVRIDYAPYGQ-NPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIG--LIH 121 (181)
Q Consensus 45 ~~~~p~l~~~~~~~~~v~l~pg~~-~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g--~~H 121 (181)
...+-+++. +.+....++||.. ...|||...+|++|||+|++++.+++. .+.|+|||++-+|+| ..|
T Consensus 33 lG~~~Gl~~--fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d~~--------e~~lrpGD~~gFpAG~~~aH 102 (161)
T COG3837 33 LGDALGLKR--FGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLREDGG--------ETRLRPGDSAGFPAGVGNAH 102 (161)
T ss_pred hhhhcChhh--cccceEEeCCCCccccccccccCceEEEEEcCceEEEECCe--------eEEecCCceeeccCCCccee
Confidence 344556663 4566677999986 588999999999999999999987532 699999999999999 899
Q ss_pred EEEeCCCCcEEEEEEEcCCCCceeee
Q 048538 122 FQFNIGKTNAVAIAALSSQNPGVITI 147 (181)
Q Consensus 122 ~~~N~g~~~~~~l~v~~~~~~g~~~~ 147 (181)
.+.|.++..+++|++-+...-..+..
T Consensus 103 hliN~s~~~~~yL~vG~r~~~d~i~Y 128 (161)
T COG3837 103 HLINRSDVILRYLEVGTREPDDIITY 128 (161)
T ss_pred EEeecCCceEEEEEeccccccceeec
Confidence 99999999999999977444333333
No 13
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.43 E-value=5.2e-12 Score=100.34 Aligned_cols=88 Identities=16% Similarity=0.110 Sum_probs=73.3
Q ss_pred CCccCceEEEEEEEcCCCc------CCCccCCC--CcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeE
Q 048538 50 GLNTLGISAVRIDYAPYGQ------NPPHTHPR--ATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIH 121 (181)
Q Consensus 50 ~l~~~~~~~~~v~l~pg~~------~~~H~H~~--~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H 121 (181)
......+.+...+++||.. .+.|+|.+ ..|++||++|++.+.+.+.+ .+.....++|||+++||+|+.|
T Consensus 62 ~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~---G~~~~~~v~pGd~v~IPpg~~H 138 (191)
T PRK04190 62 EETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPE---GEARWIEMEPGTVVYVPPYWAH 138 (191)
T ss_pred CCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCC---CcEEEEEECCCCEEEECCCCcE
Confidence 3445578999999999995 56799973 35999999999999986442 2234688999999999999999
Q ss_pred EEEeCCCCcEEEEEEEcCC
Q 048538 122 FQFNIGKTNAVAIAALSSQ 140 (181)
Q Consensus 122 ~~~N~g~~~~~~l~v~~~~ 140 (181)
...|+|++++++++++...
T Consensus 139 ~~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 139 RSVNTGDEPLVFLACYPAD 157 (191)
T ss_pred EeEECCCCCEEEEEEEcCC
Confidence 9999999999999988743
No 14
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.43 E-value=2e-12 Score=115.33 Aligned_cols=78 Identities=23% Similarity=0.230 Sum_probs=70.3
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAI 134 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l 134 (181)
.+.+.+++++||+..+.|+|.+..|.+||++|++++.+++ ..+.|++||++++|+|.+|++.|.|+++++++
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg--------~~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i 446 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGD--------ETLLLTENESTYIPLGVIHRLENPGKIPLELI 446 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECC--------EEEEecCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence 5678889999999988888887889999999999999863 26999999999999999999999999999999
Q ss_pred EEEcCC
Q 048538 135 AALSSQ 140 (181)
Q Consensus 135 ~v~~~~ 140 (181)
++.+.+
T Consensus 447 ~v~~~~ 452 (468)
T TIGR01479 447 EVQSGS 452 (468)
T ss_pred EEEcCC
Confidence 998744
No 15
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.42 E-value=2.3e-12 Score=101.52 Aligned_cols=75 Identities=20% Similarity=0.218 Sum_probs=65.0
Q ss_pred ceEEEEEEEcCCCcC-CCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEE
Q 048538 55 GISAVRIDYAPYGQN-PPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVA 133 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~-~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~ 133 (181)
.+.+..++++||+.. ..|+|+ +.|++||++|++++.+++ ..+.|++||++++|++++|.++|.+++++++
T Consensus 106 ~~~~~~~~~~pg~~~~~~~~h~-~~E~~~Vl~G~~~~~~~~--------~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~ 176 (185)
T PRK09943 106 TLAMIFETYQPGTTTGERIKHQ-GEEIGTVLEGEIVLTING--------QDYHLVAGQSYAINTGIPHSFSNTSAGICRI 176 (185)
T ss_pred eeEEEEEEccCCCCcccccccC-CcEEEEEEEeEEEEEECC--------EEEEecCCCEEEEcCCCCeeeeCCCCCCeEE
Confidence 455666788999865 467788 899999999999999853 2699999999999999999999999999999
Q ss_pred EEEEc
Q 048538 134 IAALS 138 (181)
Q Consensus 134 l~v~~ 138 (181)
+++.+
T Consensus 177 l~~~~ 181 (185)
T PRK09943 177 ISAHT 181 (185)
T ss_pred EEEeC
Confidence 99865
No 16
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=2.9e-12 Score=93.35 Aligned_cols=84 Identities=24% Similarity=0.294 Sum_probs=72.4
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAI 134 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l 134 (181)
++.+..++++||+....|.|.+-+-.+||++|+...++++. -.+....++||++|||+|++|.-.|.+++++..+
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r-----LE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~v 119 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR-----LEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAV 119 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccc-----eeeeEEecCCCeEEcCCCCCCcccccCCCCeEEE
Confidence 67888899999999999999966677999999999998742 2346779999999999999999999999999999
Q ss_pred EEEcCCCCc
Q 048538 135 AALSSQNPG 143 (181)
Q Consensus 135 ~v~~~~~~g 143 (181)
.+.+..++.
T Consensus 120 IaRsDp~~~ 128 (142)
T COG4101 120 IARSDPNPQ 128 (142)
T ss_pred EEccCCCCC
Confidence 888765543
No 17
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.37 E-value=5.2e-12 Score=112.83 Aligned_cols=78 Identities=23% Similarity=0.212 Sum_probs=69.7
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAI 134 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l 134 (181)
++.+.+++++||+....|+|.+..|++||++|++++.+++ ..+.|.+||++++|+|.+|+++|.|++++++|
T Consensus 384 ~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg--------~~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI 455 (478)
T PRK15460 384 RYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDG--------DIKLLGENESIYIPLGATHCLENPGKIPLDLI 455 (478)
T ss_pred cEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECC--------EEEEecCCCEEEECCCCcEEEEcCCCCCEEEE
Confidence 5678899999999887787776789999999999999863 26999999999999999999999999999999
Q ss_pred EEEcCC
Q 048538 135 AALSSQ 140 (181)
Q Consensus 135 ~v~~~~ 140 (181)
++.+..
T Consensus 456 ~V~~g~ 461 (478)
T PRK15460 456 EVRSGS 461 (478)
T ss_pred EEEcCC
Confidence 998753
No 18
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.34 E-value=2.6e-11 Score=93.03 Aligned_cols=92 Identities=24% Similarity=0.233 Sum_probs=77.7
Q ss_pred ccCCCeEEEEeecCCCCCCccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcE
Q 048538 33 ANRLGFSVKIANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDV 112 (181)
Q Consensus 33 ~~~~g~~~~~~~~~~~p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~ 112 (181)
.++||. ...+... .++.+.++++.||....+|.|.+..|.++|++|++.+.+++. .+.+.+||+
T Consensus 48 ~rpWG~-~~~l~~~-------~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~~~--------~~~~~~g~s 111 (151)
T PF01050_consen 48 YRPWGS-YEVLDEG-------EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLDDE--------EFTLKEGDS 111 (151)
T ss_pred ecCCcE-EEEEEcc-------CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEECCE--------EEEEcCCCE
Confidence 366776 4444422 256788999999999999999989999999999999998532 699999999
Q ss_pred EEEcCCCeEEEEeCCCCcEEEEEEEcCC
Q 048538 113 FVFPIGLIHFQFNIGKTNAVAIAALSSQ 140 (181)
Q Consensus 113 i~ip~g~~H~~~N~g~~~~~~l~v~~~~ 140 (181)
++||+|..|++.|.|+.++.+|-+-.+.
T Consensus 112 v~Ip~g~~H~i~n~g~~~L~~IEVq~G~ 139 (151)
T PF01050_consen 112 VYIPRGAKHRIENPGKTPLEIIEVQTGE 139 (151)
T ss_pred EEECCCCEEEEECCCCcCcEEEEEecCC
Confidence 9999999999999999999999887643
No 19
>PRK11171 hypothetical protein; Provisional
Probab=99.32 E-value=4.7e-11 Score=99.44 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=66.4
Q ss_pred ceEEEEEEEcCCCcCCCccCC-CCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEE
Q 048538 55 GISAVRIDYAPYGQNPPHTHP-RATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVA 133 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~-~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~ 133 (181)
.+.+.+++++||+....|.|. ..+|++||++|++++.+++ ..+.|++||++++|++.+|.++|.+++++++
T Consensus 60 ~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~~g--------~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~ 131 (266)
T PRK11171 60 TFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTLEG--------KTHALSEGGYAYLPPGSDWTLRNAGAEDARF 131 (266)
T ss_pred cEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEECC--------EEEEECCCCEEEECCCCCEEEEECCCCCEEE
Confidence 678889999999987666654 4689999999999999852 2699999999999999999999999999999
Q ss_pred EEEEc
Q 048538 134 IAALS 138 (181)
Q Consensus 134 l~v~~ 138 (181)
+++..
T Consensus 132 l~v~~ 136 (266)
T PRK11171 132 HWIRK 136 (266)
T ss_pred EEEEc
Confidence 99864
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.27 E-value=6.7e-11 Score=98.22 Aligned_cols=73 Identities=16% Similarity=0.099 Sum_probs=63.8
Q ss_pred ceEEEEEEEcCCCcCCCc-cCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEE
Q 048538 55 GISAVRIDYAPYGQNPPH-THPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVA 133 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H-~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~ 133 (181)
.+.+.+++++||+..+.| .|. .+|.+|||+|++.+.+++ ..+.+++||++++|++++|+++|.|++++++
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~-~eh~~yiL~G~G~~~~~g--------~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~ 248 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHV-MEHGLYVLEGKGVYNLDN--------NWVPVEAGDYIWMGAYCPQACYAGGRGEFRY 248 (260)
T ss_pred CcEEEEEEECCCcccCCccccc-ceeEEEEEeceEEEEECC--------EEEEecCCCEEEECCCCCEEEEecCCCcEEE
Confidence 567888999999999864 555 778899999999998752 2799999999999999999999999999999
Q ss_pred EEE
Q 048538 134 IAA 136 (181)
Q Consensus 134 l~v 136 (181)
|.-
T Consensus 249 l~y 251 (260)
T TIGR03214 249 LLY 251 (260)
T ss_pred EEE
Confidence 854
No 21
>PRK11171 hypothetical protein; Provisional
Probab=99.21 E-value=2.7e-10 Score=94.91 Aligned_cols=75 Identities=16% Similarity=0.041 Sum_probs=65.9
Q ss_pred ceEEEEEEEcCCCcCCCc-cCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEE
Q 048538 55 GISAVRIDYAPYGQNPPH-THPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVA 133 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H-~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~ 133 (181)
.+.+.+++++||+..+.| +|. .+|.+|||+|++++.+++ ..+.|++||+++++++.+|+++|.|++++++
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~-~ee~i~Vl~G~~~~~~~~--------~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~y 253 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHV-MEHGLYVLEGKGVYRLNN--------DWVEVEAGDFIWMRAYCPQACYAGGPGPFRY 253 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCC-ceEEEEEEeCEEEEEECC--------EEEEeCCCCEEEECCCCCEEEECCCCCcEEE
Confidence 357888999999998885 566 889999999999998752 2799999999999999999999999999999
Q ss_pred EEEEc
Q 048538 134 IAALS 138 (181)
Q Consensus 134 l~v~~ 138 (181)
+..-+
T Consensus 254 l~~k~ 258 (266)
T PRK11171 254 LLYKD 258 (266)
T ss_pred EEEcc
Confidence 97654
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.21 E-value=2.6e-10 Score=94.66 Aligned_cols=76 Identities=17% Similarity=0.113 Sum_probs=65.3
Q ss_pred ceEEEEEEEcCCCcC-CCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEE
Q 048538 55 GISAVRIDYAPYGQN-PPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVA 133 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~-~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~ 133 (181)
.+.+.+++++||+.. .+|+|.+.+|++||++|++++.+++ ..+.|++||++++|++.+|.++|.+++++++
T Consensus 57 ~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~g--------~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~ 128 (260)
T TIGR03214 57 TFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAEG--------ETHELREGGYAYLPPGSKWTLANAQAEDARF 128 (260)
T ss_pred cEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEECC--------EEEEECCCCEEEECCCCCEEEEECCCCCEEE
Confidence 677888999998765 4566774589999999999998752 2689999999999999999999999999999
Q ss_pred EEEEc
Q 048538 134 IAALS 138 (181)
Q Consensus 134 l~v~~ 138 (181)
+++..
T Consensus 129 l~v~k 133 (260)
T TIGR03214 129 FLYKK 133 (260)
T ss_pred EEEEe
Confidence 98764
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=99.15 E-value=7e-10 Score=83.89 Aligned_cols=95 Identities=17% Similarity=0.234 Sum_probs=59.8
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCC-CCeeEeEEecCCcEEEEcCCCeEEEEeCC-CCcEE
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNEL-NNTLIAKVLKKGDVFVFPIGLIHFQFNIG-KTNAV 132 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~-~~~~~~~~l~~GD~i~ip~g~~H~~~N~g-~~~~~ 132 (181)
.+.+-+-++.||...+.|.|. .+|+++||+|+++..+...... .++..++.+.+++.++||.+..|+.+|++ .+++.
T Consensus 43 evEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq 121 (167)
T PF02041_consen 43 EVEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ 121 (167)
T ss_dssp SEEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred eeeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence 556777889999999999999 9999999999999998743210 02345688999999999999999999998 59999
Q ss_pred EEEEEcCCCCceeeeecc
Q 048538 133 AIAALSSQNPGVITIANS 150 (181)
Q Consensus 133 ~l~v~~~~~~g~~~~~~s 150 (181)
++++++...-..|...++
T Consensus 122 vlViiSrpPvkvf~y~dw 139 (167)
T PF02041_consen 122 VLVIISRPPVKVFIYDDW 139 (167)
T ss_dssp EEEEEESSS--EEEESST
T ss_pred EEEEecCCCeEEEEeccc
Confidence 999988776666655543
No 24
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.93 E-value=4.7e-09 Score=84.94 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=62.7
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 048538 56 ISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIA 135 (181)
Q Consensus 56 ~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~ 135 (181)
..+..++++||+..+.|.|. +.|+.+||+|.+. ++ ...+.+||++..|+|..|...+.++++|.+++
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~-G~E~tlVLeG~f~----de--------~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~ 193 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHK-GFELTLVLHGAFS----DE--------TGVYGVGDFEEADGSVQHQPRTVSGGDCLCLA 193 (215)
T ss_pred cEEEEEEECCCCccCCCcCC-CcEEEEEEEEEEE----cC--------CCccCCCeEEECCCCCCcCcccCCCCCeEEEE
Confidence 35778999999999999998 8999999999853 22 25689999999999999999999889999999
Q ss_pred EEcCC
Q 048538 136 ALSSQ 140 (181)
Q Consensus 136 v~~~~ 140 (181)
+.+.+
T Consensus 194 v~dap 198 (215)
T TIGR02451 194 VLDAP 198 (215)
T ss_pred EecCC
Confidence 87754
No 25
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.87 E-value=2e-08 Score=77.43 Aligned_cols=66 Identities=17% Similarity=0.389 Sum_probs=53.3
Q ss_pred cCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 048538 64 APYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAA 136 (181)
Q Consensus 64 ~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v 136 (181)
-||....+|.|+ ++|++|+++|++.+.+.++ ++-....|++||++++|+|++|..... .+++.|.+
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~----g~~~~v~L~eGd~flvP~gvpHsP~r~--~~t~~LvI 101 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE----GKREDVPIREGDIFLLPPHVPHSPQRP--AGSIGLVI 101 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC----CcEEEEEECCCCEEEeCCCCCcccccC--CCcEEEEE
Confidence 677778899999 8999999999999988753 222468899999999999999999875 34455543
No 26
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.84 E-value=2.3e-08 Score=78.19 Aligned_cols=69 Identities=16% Similarity=0.335 Sum_probs=55.4
Q ss_pred EEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 048538 61 IDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAA 136 (181)
Q Consensus 61 v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v 136 (181)
+.=-||....+|+|+ ++|++|+++|++.+.+.++ ++-....|++||++++|+|++|..... ++++.|.+
T Consensus 39 vvgGpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~----g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi 107 (177)
T PRK13264 39 VVGGPNARTDFHYDP-GEEFFYQLEGDMYLKVQED----GKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI 107 (177)
T ss_pred EEccCCcccccccCC-CceEEEEECCeEEEEEEcC----CceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence 333788889999999 9999999999999999743 222468899999999999999999773 45555544
No 27
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.84 E-value=6.3e-08 Score=76.34 Aligned_cols=86 Identities=24% Similarity=0.262 Sum_probs=56.1
Q ss_pred CccCceEEEEEEEcCCCc------CCCccCCC------CcEEEEEEeCeEEEEEEeccCCCC----eeEeEEecCCcEEE
Q 048538 51 LNTLGISAVRIDYAPYGQ------NPPHTHPR------ATDILAVLEGTLYVGFVTSNELNN----TLIAKVLKKGDVFV 114 (181)
Q Consensus 51 l~~~~~~~~~v~l~pg~~------~~~H~H~~------~~E~~yVl~G~~~~~v~~~~~~~~----~~~~~~l~~GD~i~ 114 (181)
+...++......++||.. ..=|+|+. ..|+.+|++|++.+.+.... . +.....+++||+++
T Consensus 45 ~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~---~~~~~~~~~v~~~~G~~v~ 121 (182)
T PF06560_consen 45 LQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEE---GDDVGDVIAVEAKPGDVVY 121 (182)
T ss_dssp -----EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TT---S-----EEEEEE-TTEEEE
T ss_pred ceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecC---CCcceeEEEEEeCCCCEEE
Confidence 334468888899999864 46699986 67999999999999987643 2 23457799999999
Q ss_pred EcCCCeEEEEeCCCCcEEEEEEEcC
Q 048538 115 FPIGLIHFQFNIGKTNAVAIAALSS 139 (181)
Q Consensus 115 ip~g~~H~~~N~g~~~~~~l~v~~~ 139 (181)
||++..|...|+|++++++..++..
T Consensus 122 IPp~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 122 IPPGYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp E-TT-EEEEEE-SSS-EEEEEEEET
T ss_pred ECCCceEEEEECCCCcEEEEEEEec
Confidence 9999999999999999999988773
No 28
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.83 E-value=2e-08 Score=70.43 Aligned_cols=82 Identities=26% Similarity=0.338 Sum_probs=60.4
Q ss_pred CCCeEEEEeecCCCCCCccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEE
Q 048538 35 RLGFSVKIANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFV 114 (181)
Q Consensus 35 ~~g~~~~~~~~~~~p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ 114 (181)
..|-++.++....-.. +..+.+++++||+..+.|.|. +.|.+|||+|++.. . + ..+.+||.++
T Consensus 7 ~~Gv~~~~L~~~~~~~----g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d----~----~----~~~~~G~~~~ 69 (91)
T PF12973_consen 7 RPGVSVKPLHRDEGET----GERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSD----G----D----GRYGAGDWLR 69 (91)
T ss_dssp STTEEEEEEEECSSST----TEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEE----T----T----CEEETTEEEE
T ss_pred CCCEEEEEeccCCCcc----cCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEE----C----C----ccCCCCeEEE
Confidence 3455566666543222 557888999999999999999 78889999997774 2 1 4579999999
Q ss_pred EcCCCeEEEEeCCCCcEEEEE
Q 048538 115 FPIGLIHFQFNIGKTNAVAIA 135 (181)
Q Consensus 115 ip~g~~H~~~N~g~~~~~~l~ 135 (181)
.|+|..|.... ++.|.++.
T Consensus 70 ~p~g~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 70 LPPGSSHTPRS--DEGCLILV 88 (91)
T ss_dssp E-TTEEEEEEE--SSCEEEEE
T ss_pred eCCCCccccCc--CCCEEEEE
Confidence 99999999985 56677764
No 29
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.77 E-value=2.4e-08 Score=72.52 Aligned_cols=65 Identities=26% Similarity=0.260 Sum_probs=47.6
Q ss_pred CCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 048538 65 PYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALS 138 (181)
Q Consensus 65 pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v~~ 138 (181)
++...++|+|+ ..+++||++|++++.+++ + .+.++|||++++|+|.+|.+...++++...+++.-
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~~~------~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~ 76 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHIDG------Q--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF 76 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEETT------E--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEECC------E--EEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE
Confidence 44456889999 999999999999998752 2 69999999999999999999888776777776654
No 30
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.72 E-value=1e-07 Score=66.38 Aligned_cols=73 Identities=25% Similarity=0.344 Sum_probs=54.5
Q ss_pred ceEEEEEEEcCCCcCCC-ccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEE
Q 048538 55 GISAVRIDYAPYGQNPP-HTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVA 133 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~-H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~ 133 (181)
.+....+.|+||+.-++ +... ..-++||++|.+++.+.+ .++.+.+|++++||+|-...+.|.+++++++
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~-~~~vF~V~~G~v~Vti~~--------~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~L 81 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRD-NTMVFYVIKGKVEVTIHE--------TSFVVTKGGSFQVPRGNYYSIKNIGNEEAKL 81 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--S-EEEEEEEEESEEEEEETT--------EEEEEETT-EEEE-TT-EEEEEE-SSS-EEE
T ss_pred CceeEEEEeCCCCccCCcccCC-cEEEEEEEeCEEEEEEcC--------cEEEEeCCCEEEECCCCEEEEEECCCCcEEE
Confidence 45678899999998755 4445 677799999999999852 2699999999999999999999999999998
Q ss_pred EEE
Q 048538 134 IAA 136 (181)
Q Consensus 134 l~v 136 (181)
+.+
T Consensus 82 fF~ 84 (85)
T PF11699_consen 82 FFV 84 (85)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
No 31
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.67 E-value=3.2e-07 Score=74.46 Aligned_cols=71 Identities=21% Similarity=0.122 Sum_probs=53.5
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAI 134 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l 134 (181)
.++...+.+.. +..+ ||-..+|+.||++|++++.+++ .++.++|||++++|+|..|.+.+.+ .++++
T Consensus 156 ~m~aGf~~~~~-~sf~--wtl~~dEi~YVLEGe~~l~IdG--------~t~~l~pGDvlfIPkGs~~hf~tp~--~aRfl 222 (233)
T PRK15457 156 SMAAGFMQWEN-AFFP--WTLNYDEIDMVLEGELHVRHEG--------ETMIAKAGDVMFIPKGSSIEFGTPS--SVRFL 222 (233)
T ss_pred ceeeEEEEEec-Cccc--eeccceEEEEEEEeEEEEEECC--------EEEEeCCCcEEEECCCCeEEecCCC--CeeEE
Confidence 56666677665 3344 5544789999999999999852 2799999999999999997665543 67776
Q ss_pred EEEc
Q 048538 135 AALS 138 (181)
Q Consensus 135 ~v~~ 138 (181)
++..
T Consensus 223 yV~~ 226 (233)
T PRK15457 223 YVAW 226 (233)
T ss_pred EEEe
Confidence 6554
No 32
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.63 E-value=1.5e-07 Score=79.50 Aligned_cols=61 Identities=13% Similarity=0.051 Sum_probs=51.3
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCC
Q 048538 59 VRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGK 128 (181)
Q Consensus 59 ~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~ 128 (181)
....-+|..+.++|||. ..|+.|+++|++.+.+++ ..+.+.+||.+++++|.+|.+...++
T Consensus 29 ~~~~~~~~~m~~~HwH~-e~Ei~yv~~G~~~~~i~g--------~~~~l~~Gd~ili~s~~~H~~~~~~~ 89 (302)
T PRK10371 29 EIEFRPPHIMPTSHWHG-QVEVNVPFDGDVEYLINN--------EKVQINQGHITLFWACTPHQLTDPGN 89 (302)
T ss_pred EEEeeCCCCCCCCCccc-cEEEEEecCCcEEEEECC--------EEEEEcCCcEEEEecCCcccccccCC
Confidence 33446777889999999 999999999999998752 26999999999999999998766543
No 33
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.57 E-value=4.4e-07 Score=77.85 Aligned_cols=91 Identities=20% Similarity=0.192 Sum_probs=71.1
Q ss_pred EEEeecCCCCCCc--cCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcC
Q 048538 40 VKIANVEQIPGLN--TLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPI 117 (181)
Q Consensus 40 ~~~~~~~~~p~l~--~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~ 117 (181)
+..+.+..+++-. +..+.+..-.++||...++|.|. +.-+.||++|++.+.++++ ++..+++||++++|+
T Consensus 63 vl~l~NP~~~g~~~~t~tl~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V~g-------~~~~~~~gD~~~tP~ 134 (335)
T TIGR02272 63 VLVLENPGLRGQSSITTSLYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAVDG-------ERTTMHPGDFIITPS 134 (335)
T ss_pred EEEEeCCCCCCccccchhHHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEECC-------EEEeeeCCCEEEeCC
Confidence 4444444443322 12455666779999999999999 8899999999997666532 279999999999999
Q ss_pred CCeEEEEeCCCCcEEEEEEEc
Q 048538 118 GLIHFQFNIGKTNAVAIAALS 138 (181)
Q Consensus 118 g~~H~~~N~g~~~~~~l~v~~ 138 (181)
+..|...|.+++++..+.+.+
T Consensus 135 w~wH~H~n~~d~~~~wld~lD 155 (335)
T TIGR02272 135 WTWHDHGNPGDEPMIWLDGLD 155 (335)
T ss_pred CeeEecccCCCCcEEEEecCC
Confidence 999999999999988876666
No 34
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.54 E-value=8.8e-07 Score=68.41 Aligned_cols=67 Identities=22% Similarity=0.303 Sum_probs=48.9
Q ss_pred CCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcC
Q 048538 69 NPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALSS 139 (181)
Q Consensus 69 ~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v~~~ 139 (181)
...|.|. .+|+-||++|++.+.+...+ +.-.+..+++||.+.+|+|+.||+.-......+.+=.|..
T Consensus 85 ~~EH~H~-deEvR~i~~G~g~Fdvr~~~---~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~ 151 (157)
T PF03079_consen 85 FEEHTHE-DEEVRYIVDGSGYFDVRDGD---DVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKD 151 (157)
T ss_dssp CS-EEES-S-EEEEEEECEEEEEEE-TT---CEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESS
T ss_pred heeEecC-hheEEEEeCcEEEEEEEcCC---CEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecC
Confidence 5789999 89999999999999997543 3223467999999999999999998766667777656553
No 35
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.49 E-value=1.9e-06 Score=63.63 Aligned_cols=80 Identities=13% Similarity=0.086 Sum_probs=68.8
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAI 134 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l 134 (181)
|+++-..++.+|.....|+-. -.|-+||++|++++..... +..+.++||.++..+....|..+... +++++
T Consensus 34 GFS~h~T~i~aGtet~~~Ykn-HlEAvyci~G~Gev~~~~~------G~~~~i~pGt~YaLd~hD~H~lra~~--dm~~v 104 (126)
T PF06339_consen 34 GFSFHETTIYAGTETHIHYKN-HLEAVYCIEGEGEVEDLDT------GEVHPIKPGTMYALDKHDRHYLRAKT--DMRLV 104 (126)
T ss_pred CEEEEEEEEeCCCeeEEEecC-ceEEEEEEeceEEEEEccC------CcEEEcCCCeEEecCCCccEEEEecC--CEEEE
Confidence 778888999999999998876 6899999999999987532 34799999999999999999999864 99999
Q ss_pred EEEcCCCCc
Q 048538 135 AALSSQNPG 143 (181)
Q Consensus 135 ~v~~~~~~g 143 (181)
|||+.+--|
T Consensus 105 CVFnPpltG 113 (126)
T PF06339_consen 105 CVFNPPLTG 113 (126)
T ss_pred EEcCCCCcC
Confidence 999965433
No 36
>PRK13501 transcriptional activator RhaR; Provisional
Probab=98.41 E-value=1e-06 Score=73.49 Aligned_cols=56 Identities=21% Similarity=0.161 Sum_probs=47.5
Q ss_pred cCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCC
Q 048538 64 APYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGK 128 (181)
Q Consensus 64 ~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~ 128 (181)
.+....++|||+ ..|++||++|++++.+++ ..+.+++||.++||+|.+|.+...++
T Consensus 26 ~~~~~~~~H~H~-~~ei~~i~~G~~~~~i~~--------~~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 26 YPQETFVEHTHQ-FCEIVIVWRGNGLHVLND--------HPYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred CCCCCCcccccc-ceeEEEEecCceEEEECC--------eeeeecCCeEEEEcCCCcccccccCC
Confidence 444557799999 999999999999999853 26999999999999999999876544
No 37
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=98.41 E-value=4.3e-06 Score=62.65 Aligned_cols=95 Identities=20% Similarity=0.184 Sum_probs=54.3
Q ss_pred CCCeEEEEeecCC-CCCCccCceEEEEE-EEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCC-c
Q 048538 35 RLGFSVKIANVEQ-IPGLNTLGISAVRI-DYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKG-D 111 (181)
Q Consensus 35 ~~g~~~~~~~~~~-~p~l~~~~~~~~~v-~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~G-D 111 (181)
.+|. +....... .|. .-. .+..+ ..++|....+|.|....|+++|++|++.+.+.+. .+...+.|... .
T Consensus 14 ~RG~-L~~~e~~~~ipf-~i~--rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~----~~~~~~~L~~~~~ 85 (131)
T PF05523_consen 14 ERGS-LSVIERFDDIPF-EIK--RVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDG----REEEEFILDEPNK 85 (131)
T ss_dssp TTEE-EEEEETTTSSSS------EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-S----S-EEEEEE--TTE
T ss_pred CCCc-EEEEeccCCCCC-Ccc--EEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecC----CCcEEEEECCCCe
Confidence 4555 66666653 342 211 23333 3566666899999989999999999999998754 33456777666 5
Q ss_pred EEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 048538 112 VFVFPIGLIHFQFNIGKTNAVAIAALS 138 (181)
Q Consensus 112 ~i~ip~g~~H~~~N~g~~~~~~l~v~~ 138 (181)
.+++|+|++|.+.|.++. ++++++-+
T Consensus 86 ~L~Ippg~w~~~~~~s~~-svlLv~as 111 (131)
T PF05523_consen 86 GLYIPPGVWHGIKNFSED-SVLLVLAS 111 (131)
T ss_dssp EEEE-TT-EEEEE---TT--EEEEEES
T ss_pred EEEECCchhhHhhccCCC-cEEEEEcC
Confidence 999999999999999766 77776544
No 38
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.35 E-value=2.3e-06 Score=72.47 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=48.5
Q ss_pred EcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCC
Q 048538 63 YAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGK 128 (181)
Q Consensus 63 l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~ 128 (181)
-.|....++|||+ ..|++||++|++.+.+++. .+.+++||+++|++|..|.+...++
T Consensus 55 ~~~~~~~~~H~H~-~~el~~v~~G~g~~~v~~~--------~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 55 RYPQDVFAEHTHD-FCELVIVWRGNGLHVLNDR--------PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCCCccccc-eEEEEEEEcCeEEEEECCE--------EEeecCCeEEEECCCCeecccccCC
Confidence 3455567899999 8999999999999988532 6999999999999999999876554
No 39
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.33 E-value=4.1e-06 Score=69.35 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=44.5
Q ss_pred CCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeC
Q 048538 66 YGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNI 126 (181)
Q Consensus 66 g~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~ 126 (181)
+...++|||. ..|++||++|++.+.+++ + .+.+.+||++++|+|+.|.....
T Consensus 33 ~~~~~~H~H~-~~ei~~v~~G~~~~~i~~------~--~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHD-YYEFTLVLTGRYYQEING------K--RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccc-cEEEEEEEeceEEEEECC------E--EEEECCCcEEEeCCCCccceeee
Confidence 3456899999 999999999999998852 2 69999999999999999976543
No 40
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.33 E-value=5.3e-06 Score=64.28 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=58.9
Q ss_pred EEEEEEcCCC---------cCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCC
Q 048538 58 AVRIDYAPYG---------QNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGK 128 (181)
Q Consensus 58 ~~~v~l~pg~---------~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~ 128 (181)
...+.+-|+. +..-|.|. .+|+-|++.|++.+.+...+ ++.....+.+||.+.+|+|+-||+.-..+
T Consensus 68 ~Dvvsv~~~~pk~del~akF~~EH~H~-d~EvRy~vaG~GiF~v~~~d---~~~~~i~c~~gDLI~vP~gi~HwFtlt~~ 143 (181)
T COG1791 68 RDVVSVSPSNPKLDELRAKFLQEHLHT-DDEVRYFVAGEGIFDVHSPD---GKVYQIRCEKGDLISVPPGIYHWFTLTES 143 (181)
T ss_pred eeEEEeCCCCccHHHHHHHHHHHhccC-CceEEEEEecceEEEEECCC---CcEEEEEEccCCEEecCCCceEEEEccCC
Confidence 4456666654 23669999 99999999999999997653 35556779999999999999999987655
Q ss_pred CcEEEEEEEc
Q 048538 129 TNAVAIAALS 138 (181)
Q Consensus 129 ~~~~~l~v~~ 138 (181)
...+.+=.++
T Consensus 144 ~~f~AvRlF~ 153 (181)
T COG1791 144 PNFKAVRLFT 153 (181)
T ss_pred CcEEEEEEee
Confidence 5555554544
No 41
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.23 E-value=2.7e-06 Score=71.37 Aligned_cols=75 Identities=21% Similarity=0.204 Sum_probs=65.7
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 048538 56 ISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIA 135 (181)
Q Consensus 56 ~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~ 135 (181)
+++..=-|.||...+.|.|. ..-+-+|++|++.+++++. + +..+++||++..|++..|..-|.|++|+.++.
T Consensus 92 LyAglQlilPGEvApsHrHs-qsAlRFvveG~Ga~T~VdG----e---r~~M~~GDfilTP~w~wHdHgn~g~eP~iWlD 163 (351)
T COG3435 92 LYAGLQLILPGEVAPSHRHN-QSALRFVVEGKGAYTVVDG----E---RTPMEAGDFILTPAWTWHDHGNEGTEPCIWLD 163 (351)
T ss_pred HHhhhheecCcccCCccccc-ccceEEEEeccceeEeecC----c---eeeccCCCEEEccCceeccCCCCCCCceEEEc
Confidence 34444458999999999999 8899999999999998854 2 68899999999999999999999999999998
Q ss_pred EEc
Q 048538 136 ALS 138 (181)
Q Consensus 136 v~~ 138 (181)
.++
T Consensus 164 gLD 166 (351)
T COG3435 164 GLD 166 (351)
T ss_pred ccc
Confidence 776
No 42
>PRK13502 transcriptional activator RhaR; Provisional
Probab=98.22 E-value=6.1e-06 Score=68.37 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=48.1
Q ss_pred EcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCC
Q 048538 63 YAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGK 128 (181)
Q Consensus 63 l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~ 128 (181)
..|....++|||+ ..|++||++|++.+.+++ ..+.+++||++++|+|.+|.+...++
T Consensus 25 ~~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~~--------~~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 25 RYPQDVFAEHTHE-FCELVMVWRGNGLHVLNE--------RPYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCCccccc-eEEEEEEecCcEEEEECC--------EEEeecCCcEEEECCCCcccccccCC
Confidence 4555667899999 899999999999998852 26999999999999999999865443
No 43
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=98.21 E-value=4.8e-06 Score=69.01 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=49.2
Q ss_pred CCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 048538 65 PYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAI 134 (181)
Q Consensus 65 pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l 134 (181)
-+...++|||.+..|++|+++|++.+.+++ + .+.+++||++++|+|++|.+...++....++
T Consensus 32 ~~~~~~~H~H~~~~~l~~~~~G~~~~~~~~------~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i 93 (287)
T TIGR02297 32 FGRNMPVHFHDRYYQLHYLTEGSIALQLDE------H--EYSEYAPCFFLTPPSVPHGFVTDLDADGHVL 93 (287)
T ss_pred cCCCCCCcccccceeEEEEeeCceEEEECC------E--EEEecCCeEEEeCCCCccccccCCCcceEEE
Confidence 345679999984589999999999988752 2 6999999999999999999876554443333
No 44
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=98.16 E-value=6.5e-06 Score=61.72 Aligned_cols=70 Identities=21% Similarity=0.200 Sum_probs=54.2
Q ss_pred EcCCCcC-CCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 048538 63 YAPYGQN-PPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALS 138 (181)
Q Consensus 63 l~pg~~~-~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v~~ 138 (181)
+-.|+.. -.|+|.++.|++.|++|+..+.+++. ++....+..||++.+|+|+-|. ++.+.-+..++..|.
T Consensus 49 sW~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~-----~G~el~v~~GDvlliPAGvGH~-rl~sS~DF~VvGaYp 119 (163)
T COG4297 49 SWRGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGA-----DGQELEVGEGDVLLIPAGVGHC-RLHSSADFQVVGAYP 119 (163)
T ss_pred cccccccccccccCCcceEEEEecceeEEEecCC-----CCceeeecCCCEEEEecCcccc-cccCCCCeEEEcccC
Confidence 4445554 45799999999999999999999854 3447999999999999999997 444455666665554
No 45
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=98.16 E-value=1.3e-05 Score=66.13 Aligned_cols=87 Identities=25% Similarity=0.277 Sum_probs=51.3
Q ss_pred CCeEEEEeecCCCCCCccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEE
Q 048538 36 LGFSVKIANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVF 115 (181)
Q Consensus 36 ~g~~~~~~~~~~~p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~i 115 (181)
.+.....++...... +.+..++.+++|-..|||+|. ..+-+|||+|.+.. + + .+....-|.+|.+++.
T Consensus 20 ~~~~~~~L~gd~~~~----g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~--~-~----~~a~~~~l~~Gsy~~~ 87 (251)
T PF14499_consen 20 KGPGAAVLWGDPTKD----GPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHN--G-D----PKAAAMWLPAGSYWFQ 87 (251)
T ss_dssp S--EEEEEEEE--TT----S-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEE--T-T----EE-----E-TTEEEEE
T ss_pred CCcceeeeecCcccC----CcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEc--C-C----CcccceecCCCceEec
Confidence 344455555553222 567788999999999999999 89999999997654 2 1 2223456999999999
Q ss_pred cCCCeEEEEeCCCCcEEEE
Q 048538 116 PIGLIHFQFNIGKTNAVAI 134 (181)
Q Consensus 116 p~g~~H~~~N~g~~~~~~l 134 (181)
|+|..|.....+++.+.++
T Consensus 88 PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 88 PAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp -TT-EEEETTS-EE-EEEE
T ss_pred cCCCceeeeccCccEEEEE
Confidence 9999999877766666555
No 46
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=98.12 E-value=3.1e-05 Score=62.37 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=61.9
Q ss_pred eEEEEEEEcCCC-cCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 048538 56 ISAVRIDYAPYG-QNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAI 134 (181)
Q Consensus 56 ~~~~~v~l~pg~-~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l 134 (181)
+.-..+++.|++ .-.+-.-++.+-++||++|++.+.+.+ +++.|++|+..++|+|..|.++|...+++++-
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G--------~th~l~eggyaylPpgs~~~~~N~~~~~~rfh 132 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEG--------KTHALREGGYAYLPPGSGWTLRNAQKEDSRFH 132 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcC--------eEEEeccCCeEEeCCCCcceEeeccCCceEEE
Confidence 344568888877 445666666788899999999998852 27999999999999999999999999999998
Q ss_pred EEEc
Q 048538 135 AALS 138 (181)
Q Consensus 135 ~v~~ 138 (181)
++.-
T Consensus 133 w~rk 136 (264)
T COG3257 133 WIRK 136 (264)
T ss_pred EEee
Confidence 8754
No 47
>PRK13503 transcriptional activator RhaS; Provisional
Probab=98.11 E-value=6.4e-06 Score=67.88 Aligned_cols=55 Identities=24% Similarity=0.183 Sum_probs=47.0
Q ss_pred cCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCC
Q 048538 64 APYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIG 127 (181)
Q Consensus 64 ~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g 127 (181)
.+....++|||+ ..|++||++|.+++.+++. .+.+++||++++|++..|.+.+..
T Consensus 23 ~~~~~~~~H~H~-~~ei~~v~~G~~~~~i~~~--------~~~l~~g~~~~i~~~~~h~~~~~~ 77 (278)
T PRK13503 23 LPQAAFPEHHHD-FHEIVIVEHGTGIHVFNGQ--------PYTLSGGTVCFVRDHDRHLYEHTD 77 (278)
T ss_pred CccccccccccC-ceeEEEEecCceeeEecCC--------cccccCCcEEEECCCccchhhhcc
Confidence 345667899999 8999999999999988632 699999999999999999876653
No 48
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=98.10 E-value=4.5e-05 Score=58.03 Aligned_cols=65 Identities=15% Similarity=0.305 Sum_probs=46.1
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCC
Q 048538 59 VRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGK 128 (181)
Q Consensus 59 ~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~ 128 (181)
.++.=-|+...-.|..+ ++|++|.++|.+.+.+.++ ++.....+++||++..|++++|+..-..+
T Consensus 36 VmvVGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e~----g~~kdi~I~EGe~fLLP~~vpHsP~R~~~ 100 (151)
T PF06052_consen 36 VMVVGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVED----GKFKDIPIREGEMFLLPANVPHSPQRPAD 100 (151)
T ss_dssp EEEEESSB--SSEEE-S-S-EEEEEEES-EEEEEEET----TEEEEEEE-TTEEEEE-TT--EEEEE-TT
T ss_pred EEEEcCCCCCCccccCC-cceEEEEEeCcEEEEEEeC----CceEEEEeCCCcEEecCCCCCCCCcCCCC
Confidence 34556888899999999 9999999999999999865 34557889999999999999999876543
No 49
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=98.03 E-value=2.2e-05 Score=52.99 Aligned_cols=61 Identities=23% Similarity=0.160 Sum_probs=45.3
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEe
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFN 125 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N 125 (181)
.+........||.. ..++. ..|++|||+|++++... + +.++.++|||.+++|+|..-.|.-
T Consensus 6 ~~~~g~w~~~pg~~-~~~~~--~~E~~~vleG~v~it~~-~------G~~~~~~aGD~~~~p~G~~~~w~v 66 (74)
T PF05899_consen 6 VFSAGVWECTPGKF-PWPYP--EDEFFYVLEGEVTITDE-D------GETVTFKAGDAFFLPKGWTGTWEV 66 (74)
T ss_dssp SEEEEEEEEECEEE-EEEES--SEEEEEEEEEEEEEEET-T------TEEEEEETTEEEEE-TTEEEEEEE
T ss_pred CEEEEEEEECCcee-EeeCC--CCEEEEEEEeEEEEEEC-C------CCEEEEcCCcEEEECCCCEEEEEE
Confidence 45667777888753 23333 48999999999999753 1 237999999999999999776654
No 50
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.97 E-value=3.2e-05 Score=66.44 Aligned_cols=66 Identities=17% Similarity=0.011 Sum_probs=54.9
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 048538 60 RIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAA 136 (181)
Q Consensus 60 ~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v 136 (181)
.-.++||....+|.|. ...++||++|++...+++ + ++..++||++++|+...|...|. +++.++.+
T Consensus 254 ~q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~ig~------~--~~~W~~gD~f~vPsW~~~~h~a~--~da~Lf~~ 319 (335)
T TIGR02272 254 IQLLPKGFRTATYRST-DATVFCVVEGRGQVRIGD------A--VFRFSPKDVFVVPSWHPVRFEAS--DDAVLFSF 319 (335)
T ss_pred HhccCCCCCCCCcccc-ccEEEEEEeCeEEEEECC------E--EEEecCCCEEEECCCCcEecccC--CCeEEEEe
Confidence 3458899999999999 889999999999999852 2 69999999999999988887774 45655544
No 51
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.84 E-value=7.2e-05 Score=57.37 Aligned_cols=71 Identities=23% Similarity=0.076 Sum_probs=49.9
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAI 134 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l 134 (181)
.+++..++++.. ..-|.-.-+|+.|||+|++.+.+. +.++..++||+++||+|..-.+... ..++++
T Consensus 76 ~l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~~--------G~~~~A~~GDvi~iPkGs~I~fst~--~~a~~~ 142 (152)
T PF06249_consen 76 RLSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISID--------GQTVTAKPGDVIFIPKGSTITFSTP--DYARFF 142 (152)
T ss_dssp SSEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEET--------TEEEEEETT-EEEE-TT-EEEEEEE--EEEEEE
T ss_pred ceeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEEC--------CEEEEEcCCcEEEECCCCEEEEecC--CCEEEE
Confidence 467777777763 344666579999999999988753 1379999999999999998887654 346666
Q ss_pred EEEc
Q 048538 135 AALS 138 (181)
Q Consensus 135 ~v~~ 138 (181)
.+..
T Consensus 143 Yv~y 146 (152)
T PF06249_consen 143 YVTY 146 (152)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 6544
No 52
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.76 E-value=0.00031 Score=53.68 Aligned_cols=71 Identities=23% Similarity=0.152 Sum_probs=52.3
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAI 134 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l 134 (181)
.+.+..+++++ ...+|- -+-+|+-|||||++.+.+.+. +..-+|||++++|.|.--.+..++. ++++
T Consensus 99 ~l~aG~m~~~~-~tf~wt--l~yDe~d~VlEGrL~V~~~g~--------tv~a~aGDvifiPKgssIefst~ge--a~fl 165 (176)
T COG4766 99 RLGAGLMEMKN-TTFPWT--LNYDEIDYVLEGRLHVRIDGR--------TVIAGAGDVIFIPKGSSIEFSTTGE--AKFL 165 (176)
T ss_pred ccccceeeecc-ccCcce--ecccceeEEEeeeEEEEEcCC--------eEecCCCcEEEecCCCeEEEeccce--EEEE
Confidence 34555666666 445543 336899999999999987521 6899999999999999888776654 7777
Q ss_pred EEEc
Q 048538 135 AALS 138 (181)
Q Consensus 135 ~v~~ 138 (181)
.+.-
T Consensus 166 yvty 169 (176)
T COG4766 166 YVTY 169 (176)
T ss_pred EEEc
Confidence 6543
No 53
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.75 E-value=8e-05 Score=57.44 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=55.2
Q ss_pred EEEEEEcCCCc----------CCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCC
Q 048538 58 AVRIDYAPYGQ----------NPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIG 127 (181)
Q Consensus 58 ~~~v~l~pg~~----------~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g 127 (181)
+..+++-|... ...|.|. .+|+-||++|++.+-+.+.+ +.=...-++.||.|++|+|.-|++.-+.
T Consensus 65 ~d~~~~~~e~~~nfdeKvk~FfEEhlh~-deeiR~il~GtgYfDVrd~d---d~WIRi~vekGDlivlPaGiyHRFTtt~ 140 (179)
T KOG2107|consen 65 MDICTVCPETLPNFDEKVKSFFEEHLHE-DEEIRYILEGTGYFDVRDKD---DQWIRIFVEKGDLIVLPAGIYHRFTTTP 140 (179)
T ss_pred eeEEEEchhhcccHHHHHHHHHHHhcCc-hhheEEEeecceEEeeccCC---CCEEEEEEecCCEEEecCcceeeeecCc
Confidence 44566666543 4789999 99999999999999987543 3324455999999999999999997765
Q ss_pred CCcEEEE
Q 048538 128 KTNAVAI 134 (181)
Q Consensus 128 ~~~~~~l 134 (181)
+.-.+.+
T Consensus 141 ~n~vkam 147 (179)
T KOG2107|consen 141 SNYVKAM 147 (179)
T ss_pred hHHHHHH
Confidence 5544333
No 54
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=97.61 E-value=0.00031 Score=55.84 Aligned_cols=91 Identities=20% Similarity=0.148 Sum_probs=72.2
Q ss_pred CccCCCeEEEEeecCCCCCCccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCc
Q 048538 32 AANRLGFSVKIANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGD 111 (181)
Q Consensus 32 ~~~~~g~~~~~~~~~~~p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD 111 (181)
-|...|++...+..+..+ ...+.++.+.||...+-|.|. +.|.+.|++|... +. .-.+.+||
T Consensus 109 ~W~~~G~rv~~v~l~~dd-----s~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~~s----de--------~G~y~vgD 170 (216)
T COG3806 109 RWLGPGGRVEPVRLPTDD-----SRRVALLKIEPGRSFPDHTHV-GIERTAVLEGAFS----DE--------NGEYLVGD 170 (216)
T ss_pred eeecCCcceeecccCCCC-----CceeEEEEeccCccccccccc-ceEEEEEEeeccc----cC--------CCccccCc
Confidence 456667766666665533 457889999999999999999 9999999999433 22 24789999
Q ss_pred EEEEcCCCeEEEEeCCCCcEEEEEEEcCC
Q 048538 112 VFVFPIGLIHFQFNIGKTNAVAIAALSSQ 140 (181)
Q Consensus 112 ~i~ip~g~~H~~~N~g~~~~~~l~v~~~~ 140 (181)
+..-+..+.|.-+-..+.+|..++..+.+
T Consensus 171 ~~~~d~~v~H~piv~~~~eClcl~al~~~ 199 (216)
T COG3806 171 FTLADGTVQHSPIVLPPGECLCLAALDGP 199 (216)
T ss_pred eeecCCccccccccCCCCCceEEEEcCCC
Confidence 99999999999877778899999887754
No 55
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=97.52 E-value=0.0011 Score=48.57 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=48.9
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCC
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIG 127 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g 127 (181)
.+...+..-.||. ++++-...|++|+|+|++++.-. .++...+++||++++|+|..=.|+-..
T Consensus 44 ~~~~GiWe~TpG~---~r~~y~~~E~chil~G~v~~T~d-------~Ge~v~~~aGD~~~~~~G~~g~W~V~E 106 (116)
T COG3450 44 QVETGIWECTPGK---FRVTYDEDEFCHILEGRVEVTPD-------GGEPVEVRAGDSFVFPAGFKGTWEVLE 106 (116)
T ss_pred CeeEeEEEecCcc---ceEEcccceEEEEEeeEEEEECC-------CCeEEEEcCCCEEEECCCCeEEEEEee
Confidence 4566777777774 56665578999999999999743 234799999999999999987776543
No 56
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.41 E-value=0.001 Score=53.72 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=58.4
Q ss_pred ceEEEEEEEcCCCcCCCc-cCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEE
Q 048538 55 GISAVRIDYAPYGQNPPH-THPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVA 133 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H-~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~ 133 (181)
.+.+..++++||+..|.- .|- -+.=.|||+|++.+.++.+ .+.+++||.+.+-+-.+.+++.-|....+.
T Consensus 181 Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrLn~d--------wv~V~aGD~mwm~A~cpQacyagG~g~frY 251 (264)
T COG3257 181 DMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRLNNN--------WVPVEAGDYIWMGAYCPQACYAGGRGAFRY 251 (264)
T ss_pred ceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEeecCc--------eEEeecccEEEeeccChhhhccCCCCceEE
Confidence 778889999999987653 455 3344899999999998632 689999999999999999999988776666
Q ss_pred EE
Q 048538 134 IA 135 (181)
Q Consensus 134 l~ 135 (181)
|.
T Consensus 252 Ll 253 (264)
T COG3257 252 LL 253 (264)
T ss_pred EE
Confidence 53
No 57
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=97.39 E-value=0.0047 Score=48.41 Aligned_cols=86 Identities=20% Similarity=0.176 Sum_probs=56.2
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCC-----eeEeEEecCCcEEEEcCCCeEEEEeCC-C
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNN-----TLIAKVLKKGDVFVFPIGLIHFQFNIG-K 128 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~-----~~~~~~l~~GD~i~ip~g~~H~~~N~g-~ 128 (181)
.+.+..+.-.||...+.|=|.++.=++.|++|+++-..-.....+. ......+..|..++++.+..|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 4567778899999999999986667888999997766543221000 012345778888888999999999987 7
Q ss_pred CcEEEEEEEcCC
Q 048538 129 TNAVAIAALSSQ 140 (181)
Q Consensus 129 ~~~~~l~v~~~~ 140 (181)
++++-|=+|..+
T Consensus 154 ~~avSLHvYspP 165 (175)
T PF05995_consen 154 EPAVSLHVYSPP 165 (175)
T ss_dssp S-EEEEEEEES-
T ss_pred CCEEEEEEcCCC
Confidence 888877777754
No 58
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.26 E-value=0.00097 Score=56.27 Aligned_cols=65 Identities=26% Similarity=0.244 Sum_probs=55.1
Q ss_pred EEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 048538 62 DYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAA 136 (181)
Q Consensus 62 ~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v 136 (181)
.++||-...+|.|. ..-++-|.+|++...|++ +++...+||++++|+-..|...|- .+++.++++
T Consensus 267 lL~~Gf~~~~~r~t-~s~iy~V~eGsg~~~Ig~--------~rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 267 LLPPGFHGKAHRHT-DSTIYHVVEGSGYTIIGG--------ERFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred hcCCcccCCceecc-CCEEEEEEecceeEEECC--------EEeeccCCCEEEccCcceeecccC-CcceEEEec
Confidence 37888888999999 778888999999998862 279999999999999999999985 677777654
No 59
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.15 E-value=0.0006 Score=56.42 Aligned_cols=100 Identities=16% Similarity=0.115 Sum_probs=54.9
Q ss_pred CCCCC---C-ccCCCeEEEEeecCCCCCCccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCee
Q 048538 27 DEPKN---A-ANRLGFSVKIANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTL 102 (181)
Q Consensus 27 ~~~~~---~-~~~~g~~~~~~~~~~~p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~ 102 (181)
++++| + ....|-++..+|...--+ .+.-.++.++.|.....|+|. +.|-.|||+|++.++.... .
T Consensus 142 ~dl~W~~~~~~~~~g~~~a~Lwgd~~~g----~~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~------~ 210 (251)
T PF14499_consen 142 SDLEWISAPPGPPPGAQIAFLWGDPNTG----QYTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGA------S 210 (251)
T ss_dssp CCS--EE-SSSTT-SEEEEEEEE-TTS-----EE-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEE------E
T ss_pred ccCCccccCCCCCCcceEEEEecCCCCC----ceeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeeccc------C
Confidence 56665 1 234566666777664443 344556777777778999999 8888999999999965422 2
Q ss_pred EeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 048538 103 IAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALS 138 (181)
Q Consensus 103 ~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v~~ 138 (181)
....|.+|..+.-|.+..|... .++++|.++.-.+
T Consensus 211 ~~~~L~~GSYf~s~~~~~H~~~-~~e~~~vlyIRtd 245 (251)
T PF14499_consen 211 NFGTLDPGSYFGSPGHITHGIF-ITEDECVLYIRTD 245 (251)
T ss_dssp TTEEEEE-TT-EE--E-------EESS-EEEEEEES
T ss_pred CCccccCCcccccCCccccccc-ccCCCEEEEEEEC
Confidence 2589999999999999999998 6788888875433
No 60
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=96.86 E-value=0.0046 Score=44.79 Aligned_cols=65 Identities=26% Similarity=0.219 Sum_probs=47.2
Q ss_pred CCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcC--CCeEEEEeCCC-CcEEEEEEE
Q 048538 66 YGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPI--GLIHFQFNIGK-TNAVAIAAL 137 (181)
Q Consensus 66 g~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~--g~~H~~~N~g~-~~~~~l~v~ 137 (181)
+...++|-|.+-+-+.||++|+++.. ++. +....|++||+-.+-+ |+.|.-.|.++ .+++++-++
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~-----G~~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQlW 106 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSL-----GNRGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQLW 106 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETT-----SEEEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCC-----CCeeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEEc
Confidence 55668999995555579999998764 332 2358899999999998 57999999887 788877543
No 61
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.61 E-value=0.081 Score=41.59 Aligned_cols=76 Identities=13% Similarity=0.082 Sum_probs=54.6
Q ss_pred EEcCCCcCCCccCC--CCcEEEEEEeCeEEEEEEeccCCC---CeeEeEEecC--CcEEEEcCCCeEEEEeCCCCcEEEE
Q 048538 62 DYAPYGQNPPHTHP--RATDILAVLEGTLYVGFVTSNELN---NTLIAKVLKK--GDVFVFPIGLIHFQFNIGKTNAVAI 134 (181)
Q Consensus 62 ~l~pg~~~~~H~H~--~~~E~~yVl~G~~~~~v~~~~~~~---~~~~~~~l~~--GD~i~ip~g~~H~~~N~g~~~~~~l 134 (181)
.-.+|....+|.|. ....+++|++|++...+.+--.++ .+-....|.+ +..++||+|+.|.+.+.++. +.++
T Consensus 50 ~S~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~ 128 (176)
T TIGR01221 50 KSYKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFL 128 (176)
T ss_pred EecCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEE
Confidence 34678889999984 268999999999988777632111 1123456766 56999999999999998755 5555
Q ss_pred EEEc
Q 048538 135 AALS 138 (181)
Q Consensus 135 ~v~~ 138 (181)
...+
T Consensus 129 Y~~~ 132 (176)
T TIGR01221 129 YKCT 132 (176)
T ss_pred EeCC
Confidence 5544
No 62
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=96.59 E-value=0.0087 Score=49.70 Aligned_cols=49 Identities=22% Similarity=0.181 Sum_probs=39.3
Q ss_pred CccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCC
Q 048538 71 PHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGK 128 (181)
Q Consensus 71 ~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~ 128 (181)
+|-.. +.++.|+++|++.+.+++ + .+.+++||.+++|+|++|.+....+
T Consensus 44 ~~~~~-~~~i~~~~~G~~~~~~~~------~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 44 PLGMK-GYILNLTIRGQGVIFNGG------R--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred CCCcc-ceEEEEEEeccEEEecCC------e--eEecCCCCEEEECCCCceeeccCCC
Confidence 45555 678899999999987642 2 6999999999999999998765443
No 63
>COG1741 Pirin-related protein [General function prediction only]
Probab=96.58 E-value=0.024 Score=47.62 Aligned_cols=72 Identities=24% Similarity=0.261 Sum_probs=55.3
Q ss_pred EEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcC--CCeEEEEeC--CCCcEEEEEE
Q 048538 61 IDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPI--GLIHFQFNI--GKTNAVAIAA 136 (181)
Q Consensus 61 v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~--g~~H~~~N~--g~~~~~~l~v 136 (181)
..+.||..+++|-|.+-+-+.||++|+++.. ++. +....++|||+-.+-+ |+.|.-.|. .+++++.+-+
T Consensus 49 ~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~-----Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~Ql 121 (276)
T COG1741 49 DVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSL-----GNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQL 121 (276)
T ss_pred ccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecC-----CceeeecccceeEEcCCCceeecccCCccCCCccceeee
Confidence 3489999999999995445579999998875 222 2368999999999998 579998886 4557777766
Q ss_pred EcC
Q 048538 137 LSS 139 (181)
Q Consensus 137 ~~~ 139 (181)
+..
T Consensus 122 Wv~ 124 (276)
T COG1741 122 WVN 124 (276)
T ss_pred ecC
Confidence 653
No 64
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.52 E-value=0.018 Score=46.17 Aligned_cols=69 Identities=23% Similarity=0.337 Sum_probs=47.5
Q ss_pred EEE-cCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccC-------C-------------------------CCeeEeEEe
Q 048538 61 IDY-APYGQNPPHTHPRATDILAVLEGTLYVGFVTSNE-------L-------------------------NNTLIAKVL 107 (181)
Q Consensus 61 v~l-~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~-------~-------------------------~~~~~~~~l 107 (181)
+.+ .+|+..++|+.. ..-+..+|+|+=++.+..+.. . .......+|
T Consensus 135 l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~l 213 (251)
T PF13621_consen 135 LWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVVL 213 (251)
T ss_dssp EEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEEE
T ss_pred EEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEEE
Confidence 444 446778999988 788999999998888776542 0 012456789
Q ss_pred cCCcEEEEcCCCeEEEEeCCCCc
Q 048538 108 KKGDVFVFPIGLIHFQFNIGKTN 130 (181)
Q Consensus 108 ~~GD~i~ip~g~~H~~~N~g~~~ 130 (181)
+|||+++||+|..|+++|.++++
T Consensus 214 ~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 214 EPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp ETT-EEEE-TT-EEEEEESTTSS
T ss_pred CCCeEEEECCCCeEEEEEcCCCC
Confidence 99999999999999999984444
No 65
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=96.46 E-value=0.024 Score=44.47 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=50.5
Q ss_pred cCCCcCCCccCCCC-cEEEEEEeCeEEEEEEeccCCC---CeeEeEEecCC--cEEEEcCCCeEEEEeCCCCc
Q 048538 64 APYGQNPPHTHPRA-TDILAVLEGTLYVGFVTSNELN---NTLIAKVLKKG--DVFVFPIGLIHFQFNIGKTN 130 (181)
Q Consensus 64 ~pg~~~~~H~H~~~-~E~~yVl~G~~~~~v~~~~~~~---~~~~~~~l~~G--D~i~ip~g~~H~~~N~g~~~ 130 (181)
.||....+|+|... .+++.|++|++.....+--..+ .+-....+.+- ..++||+|..|.+.|.+++.
T Consensus 53 ~~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~ 125 (173)
T COG1898 53 YPGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA 125 (173)
T ss_pred cCCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCce
Confidence 38999999999866 7999999999887776532100 01223456655 89999999999999999877
No 66
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=96.31 E-value=0.051 Score=46.42 Aligned_cols=66 Identities=23% Similarity=0.281 Sum_probs=43.3
Q ss_pred EEEcCCC--cCCCccCCCCcEEEEEEeCeEEEEEEeccC----------C-----CCeeEeEEecCCcEEEEcCCCeEEE
Q 048538 61 IDYAPYG--QNPPHTHPRATDILAVLEGTLYVGFVTSNE----------L-----NNTLIAKVLKKGDVFVFPIGLIHFQ 123 (181)
Q Consensus 61 v~l~pg~--~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~----------~-----~~~~~~~~l~~GD~i~ip~g~~H~~ 123 (181)
+.+.|++ ..++|+=. .+-++.-++|+=+..+..... . .......+|+|||++|+|+|.+|..
T Consensus 118 ~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~ 196 (319)
T PF08007_consen 118 AYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQA 196 (319)
T ss_dssp EEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEE
T ss_pred EEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCC
Confidence 4455665 68999877 678888899988877765210 0 0123468899999999999999999
Q ss_pred EeCC
Q 048538 124 FNIG 127 (181)
Q Consensus 124 ~N~g 127 (181)
.+.+
T Consensus 197 ~~~~ 200 (319)
T PF08007_consen 197 VTTD 200 (319)
T ss_dssp EESS
T ss_pred CCCC
Confidence 9987
No 67
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.23 E-value=0.075 Score=41.77 Aligned_cols=79 Identities=11% Similarity=0.071 Sum_probs=53.9
Q ss_pred EEEEEcCCCcCCCccCCCC---cEEEEEEeCeEEEEEEeccCCC---CeeEeEEecCCc--EEEEcCCCeEEEEeCCCCc
Q 048538 59 VRIDYAPYGQNPPHTHPRA---TDILAVLEGTLYVGFVTSNELN---NTLIAKVLKKGD--VFVFPIGLIHFQFNIGKTN 130 (181)
Q Consensus 59 ~~v~l~pg~~~~~H~H~~~---~E~~yVl~G~~~~~v~~~~~~~---~~~~~~~l~~GD--~i~ip~g~~H~~~N~g~~~ 130 (181)
..-.-.+|....+|+|... ..+++|++|++...+.+--.++ .+-....|.+++ .++||+|+.|.+.+.++.
T Consensus 46 n~S~s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~- 124 (176)
T PF00908_consen 46 NISVSKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDD- 124 (176)
T ss_dssp EEEEEETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSE-
T ss_pred EEEEccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCc-
Confidence 3334455888999998843 5899999999888777521100 123456787775 799999999999999765
Q ss_pred EEEEEEEc
Q 048538 131 AVAIAALS 138 (181)
Q Consensus 131 ~~~l~v~~ 138 (181)
+.++...+
T Consensus 125 a~v~Y~~t 132 (176)
T PF00908_consen 125 AEVLYKVT 132 (176)
T ss_dssp EEEEEEES
T ss_pred eEEEEecC
Confidence 44444444
No 68
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=96.18 E-value=0.0094 Score=48.04 Aligned_cols=66 Identities=14% Similarity=0.295 Sum_probs=53.5
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeC
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNI 126 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~ 126 (181)
++.++. .=-|+.....|..+ ++|++|-..|...+.+.+.+ +.+...++.||++..|+.++|...-.
T Consensus 33 qlkVm~-VGGPN~RkdyHiee-geE~FyQ~KGdMvLKVie~g----~~rDivI~qGe~flLParVpHSPqRF 98 (279)
T KOG3995|consen 33 QLKVMF-VGGPNTRKDYHIEE-GEEVFYQLKGDMVLKVLEQG----KHRDVVIRQGEIFLLPARVPHSPQRF 98 (279)
T ss_pred CeEEEE-ecCCCcccccccCC-cchhheeecCceEEeeeccC----cceeeEEecCcEEEeccCCCCChhhh
Confidence 444443 35788888999989 99999999999999998663 34568899999999999999986544
No 69
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.10 E-value=0.04 Score=48.86 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=37.4
Q ss_pred cCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 048538 73 THPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAA 136 (181)
Q Consensus 73 ~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v 136 (181)
.+..++|++++-+|++.++-.- ....+++||.++||+|+.+++.-. .+++.+++
T Consensus 142 ~NaDGD~Li~~q~G~l~l~Te~--------G~L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~ 195 (424)
T PF04209_consen 142 RNADGDELIFPQQGSLRLETEF--------GRLDVRPGDYVVIPRGTRFRVELP--GPARGYII 195 (424)
T ss_dssp EESSEEEEEEEEES-EEEEETT--------EEEEE-TTEEEEE-TT--EEEE-S--SSEEEEEE
T ss_pred EcCCCCEEEEEEECCEEEEecC--------eeEEEcCCeEEEECCeeEEEEEeC--CCceEEEE
Confidence 4555999999999999987532 158899999999999999998776 55665543
No 70
>PF12852 Cupin_6: Cupin
Probab=96.05 E-value=0.014 Score=45.51 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=35.6
Q ss_pred cEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeC
Q 048538 78 TDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNI 126 (181)
Q Consensus 78 ~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~ 126 (181)
.-+.+|++|+..+.+.+. .....|++||++++|.|..|.+...
T Consensus 36 ~~fh~V~~G~~~l~~~~~------~~~~~L~~GDivllp~g~~H~l~~~ 78 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGG------GEPIRLEAGDIVLLPRGTAHVLSSD 78 (186)
T ss_pred eEEEEEECCeEEEEEcCC------CCeEEecCCCEEEEcCCCCeEeCCC
Confidence 567889999999987531 1369999999999999999999543
No 71
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=96.01 E-value=0.15 Score=41.46 Aligned_cols=74 Identities=19% Similarity=0.213 Sum_probs=42.7
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEe-CeEEEEEEeccCC--------------CCe-----eEeEEecCCcEEEEcCCC
Q 048538 60 RIDYAPYGQNPPHTHPRATDILAVLE-GTLYVGFVTSNEL--------------NNT-----LIAKVLKKGDVFVFPIGL 119 (181)
Q Consensus 60 ~v~l~pg~~~~~H~H~~~~E~~yVl~-G~~~~~v~~~~~~--------------~~~-----~~~~~l~~GD~i~ip~g~ 119 (181)
++.+.+|+..|.|.|..-.|=+..-- |++.+++.....+ |.. +.+..|.||++|.+++|.
T Consensus 91 im~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg~ 170 (225)
T PF07385_consen 91 IMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPGI 170 (225)
T ss_dssp EEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TTE
T ss_pred heeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCCC
Confidence 36679999999999987777654443 4666666543210 110 235779999999999999
Q ss_pred eEEEEeCCCCcEEEEE
Q 048538 120 IHFQFNIGKTNAVAIA 135 (181)
Q Consensus 120 ~H~~~N~g~~~~~~l~ 135 (181)
.|+++..+.. +++.
T Consensus 171 yH~Fw~e~g~--vLig 184 (225)
T PF07385_consen 171 YHWFWGEGGD--VLIG 184 (225)
T ss_dssp EEEEEE-TTS--EEEE
T ss_pred eeeEEecCCC--EEEE
Confidence 9999986544 4444
No 72
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=95.79 E-value=0.11 Score=37.00 Aligned_cols=93 Identities=18% Similarity=0.158 Sum_probs=54.1
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 048538 59 VRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALS 138 (181)
Q Consensus 59 ~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v~~ 138 (181)
..+.++||+......-++..-++||++|++.+ + + + ...+.+|+.+++..+..-.+.+.+ +.++++.+-.
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v--~-~----~---~~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~G 70 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEV--G-G----E---EDPLEAGQLVVLEDGDEIELTAGE-EGARFLLLGG 70 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEE--T-T----T---TEEEETTEEEEE-SECEEEEEESS-SSEEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEE--C-C----C---cceECCCcEEEECCCceEEEEECC-CCcEEEEEEc
Confidence 34778888865332223245789999999776 2 2 2 268999999999977777777754 8888886544
Q ss_pred CC-CCceeeeecchhcCCCCCCHHHHHHHc
Q 048538 139 SQ-NPGVITIANSVFGANPPINPDFLAKAF 167 (181)
Q Consensus 139 ~~-~~g~~~~~~s~~~~~~~~~~e~l~~~~ 167 (181)
.+ +.-.+..++-|++ +++.+.+++
T Consensus 71 ePl~Epi~~~GpFVmn-----t~eeI~qA~ 95 (104)
T PF05726_consen 71 EPLNEPIVQYGPFVMN-----TREEIEQAF 95 (104)
T ss_dssp ----S--EEETTEEES-----SHHHHHHHH
T ss_pred cCCCCCEEEECCcccC-----CHHHHHHHH
Confidence 33 2223334443444 455555543
No 73
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=95.51 E-value=0.16 Score=45.11 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=42.8
Q ss_pred ccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 048538 72 HTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIA 135 (181)
Q Consensus 72 H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~ 135 (181)
-.+..+++++++-+|++.+.-.-+ ...+++||.++||+|+.+++.-. +.+++.++
T Consensus 149 f~NaDGD~Livpq~G~l~i~TEfG--------~L~v~pgei~VIPRG~~frv~l~-~gp~rgyi 203 (438)
T PRK05341 149 FYNADGELLIVPQQGRLRLATELG--------VLDVEPGEIAVIPRGVKFRVELP-DGPARGYV 203 (438)
T ss_pred eecCCCCEEEEEEeCCEEEEEecc--------ceEecCCCEEEEcCccEEEEecC-CCCeeEEE
Confidence 345559999999999999876432 58999999999999999998743 34555544
No 74
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=95.12 E-value=0.24 Score=43.95 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=42.1
Q ss_pred cCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 048538 73 THPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIA 135 (181)
Q Consensus 73 ~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~ 135 (181)
....+++++++-+|.+.+.-.-+ ...+++||.++||+|+.+++.-.+ +++.++
T Consensus 144 ~NaDGD~Livpq~G~l~i~TEfG--------~L~v~pgei~VIPRG~~frv~l~g--p~rgyi 196 (429)
T TIGR01015 144 YNADGDFLIVPQQGALLITTEFG--------RLLVEPNEICVIPRGVRFRVTVLE--PARGYI 196 (429)
T ss_pred eccCCCEEEEEEeCcEEEEEecc--------ceEecCCCEEEecCccEEEEeeCC--CceEEE
Confidence 44459999999999999876432 589999999999999999987654 555443
No 75
>PLN02658 homogentisate 1,2-dioxygenase
Probab=95.01 E-value=0.28 Score=43.60 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=42.4
Q ss_pred ccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 048538 72 HTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIA 135 (181)
Q Consensus 72 H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~ 135 (181)
-.+..+++++++-+|.+.+.-.-+ ...+++||.++||+|+.+++.-. +.+++.++
T Consensus 142 f~NaDGD~Livpq~G~l~i~TEfG--------~L~v~pgei~VIPRG~~frv~l~-~gp~rgyv 196 (435)
T PLN02658 142 FCNADGDFLIVPQQGRLWIKTELG--------KLQVSPGEIVVIPRGFRFAVDLP-DGPSRGYV 196 (435)
T ss_pred eecCCCCEEEEEEeCCEEEEEecc--------ceEecCCCEEEecCccEEEEecC-CCCeeEEE
Confidence 345559999999999999876432 58999999999999999987643 34555543
No 76
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=94.96 E-value=0.089 Score=40.62 Aligned_cols=70 Identities=17% Similarity=0.295 Sum_probs=44.0
Q ss_pred EEEEEEEcCCCcCCCccCCCCc----EEEEEE-eCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcE
Q 048538 57 SAVRIDYAPYGQNPPHTHPRAT----DILAVL-EGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNA 131 (181)
Q Consensus 57 ~~~~v~l~pg~~~~~H~H~~~~----E~~yVl-~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~ 131 (181)
.+....+.||+...+|.-.... .+..++ .+...+.++ + .++..++|+.+++....+|...|.|+++-
T Consensus 81 ~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~------~--~~~~w~~G~~~~fD~s~~H~~~N~~~~~R 152 (163)
T PF05118_consen 81 RVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVG------G--ETRHWREGECWVFDDSFEHEVWNNGDEDR 152 (163)
T ss_dssp EEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEET------T--EEEB--CTEEEEE-TTS-EEEEESSSS-E
T ss_pred hEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEEC------C--eEEEeccCcEEEEeCCEEEEEEeCCCCCE
Confidence 3556778999999999766222 223334 245565553 2 26889999999999999999999998764
Q ss_pred EEE
Q 048538 132 VAI 134 (181)
Q Consensus 132 ~~l 134 (181)
++|
T Consensus 153 v~L 155 (163)
T PF05118_consen 153 VVL 155 (163)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 77
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=94.96 E-value=0.19 Score=41.78 Aligned_cols=66 Identities=12% Similarity=0.067 Sum_probs=44.7
Q ss_pred ceEEEEEEEcCCCcC-----CCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCC
Q 048538 55 GISAVRIDYAPYGQN-----PPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGK 128 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~-----~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~ 128 (181)
++.+..+...+.... ..|.+.....++++++|++.+..++ ..+.++|||+++++++.+|.+...++
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~g--------~~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQDD--------RQVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEECC--------eEEEEcCCCEEEEECCCCcEeecCCC
Confidence 345555655554321 2333333455678899999987642 26899999999999999998765444
No 78
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=94.87 E-value=0.29 Score=42.62 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=49.9
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCC
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIG 127 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g 127 (181)
.+.+..+++++|.....-.-+ +.-++.|++|++++....+ ....+.+||+++||++..-.+...+
T Consensus 332 eF~v~~~~v~~g~~~~~~~~~-~~SIllv~~G~g~l~~~t~-------~~~~v~rG~V~fI~a~~~i~~~~~s 396 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGVD-GPSILLVLKGSGILKTDTD-------SKILVNRGDVLFIPANHPIHLSSSS 396 (411)
T ss_pred ceeEEEeecCCCceEEeecCC-CceEEEEEecceEEecCCC-------CceeeccCcEEEEcCCCCceeeccC
Confidence 567888889987764433455 7889999999999976422 2689999999999999877655543
No 79
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=94.75 E-value=0.36 Score=34.15 Aligned_cols=65 Identities=14% Similarity=0.019 Sum_probs=43.5
Q ss_pred EEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 048538 61 IDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAA 136 (181)
Q Consensus 61 v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v 136 (181)
-.+.||. .+......|+.-|++|++++.+.+. .....+++|+.+.||++.--.++.. ++..++|-
T Consensus 28 GVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~------~ew~~~~aGesF~VpanssF~v~v~--~~~~Y~C~ 92 (94)
T PF06865_consen 28 GVMLPGE---YTFGTSAPERMEVVSGELEVKLPGE------DEWQTYSAGESFEVPANSSFDVKVK--EPTAYLCS 92 (94)
T ss_dssp EEE-SEC---EEEEESS-EEEEEEESEEEEEETT-------SS-EEEETT-EEEE-TTEEEEEEES--S-EEEEEE
T ss_pred EEEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCC------cccEEeCCCCeEEECCCCeEEEEEC--cceeeEEE
Confidence 3366765 2334446899999999999998643 2378899999999999999888774 45555554
No 80
>PRK10579 hypothetical protein; Provisional
Probab=94.46 E-value=0.37 Score=34.05 Aligned_cols=63 Identities=16% Similarity=0.069 Sum_probs=46.6
Q ss_pred EcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 048538 63 YAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAA 136 (181)
Q Consensus 63 l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v 136 (181)
+.||. .+.-....|+.-|++|++++.+.+. .....+++|+.+.||++..-.++.. +...++|-
T Consensus 30 m~pGe---y~F~T~~~E~MeivsG~l~V~Lpg~------~ew~~~~aG~sF~VpanssF~l~v~--~~t~Y~C~ 92 (94)
T PRK10579 30 MAEGE---YTFSTAEPEEMTVISGALNVLLPGA------TDWQVYEAGEVFNVPGHSEFHLQVA--EPTSYLCR 92 (94)
T ss_pred EeeeE---EEEcCCCcEEEEEEeeEEEEECCCC------cccEEeCCCCEEEECCCCeEEEEEC--cceeeEEE
Confidence 56665 2333346899999999999998643 2378999999999999998888774 34445543
No 81
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=94.31 E-value=0.19 Score=40.01 Aligned_cols=68 Identities=21% Similarity=0.213 Sum_probs=43.9
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCe--EEEEEEecc-CC-------------CCe-----eEeEEecCCcEEEEcC
Q 048538 59 VRIDYAPYGQNPPHTHPRATDILAVLEGT--LYVGFVTSN-EL-------------NNT-----LIAKVLKKGDVFVFPI 117 (181)
Q Consensus 59 ~~v~l~pg~~~~~H~H~~~~E~~yVl~G~--~~~~v~~~~-~~-------------~~~-----~~~~~l~~GD~i~ip~ 117 (181)
-++.+.+|...|.|.|....|=+ +-+|. +++++.... .+ |.. +....|+||+++.+|+
T Consensus 89 KiM~vr~gQvtPmHrH~~k~eDi-inrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~P 167 (225)
T COG3822 89 KIMHVRPGQVTPMHRHWRKPEDI-INRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPP 167 (225)
T ss_pred eeEEeccCCcCcccccccchhhh-hhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCC
Confidence 34668999999999998544432 33443 333332211 00 111 2246799999999999
Q ss_pred CCeEEEEeCC
Q 048538 118 GLIHFQFNIG 127 (181)
Q Consensus 118 g~~H~~~N~g 127 (181)
|+.|+++.-+
T Consensus 168 g~~HsFwae~ 177 (225)
T COG3822 168 GLYHSFWAEE 177 (225)
T ss_pred CceeeeeecC
Confidence 9999999854
No 82
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=94.22 E-value=0.24 Score=41.43 Aligned_cols=63 Identities=16% Similarity=0.064 Sum_probs=45.5
Q ss_pred cCCCcCCCccC-CCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCC-cEEEEcCCCeEEEEeCCC
Q 048538 64 APYGQNPPHTH-PRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKG-DVFVFPIGLIHFQFNIGK 128 (181)
Q Consensus 64 ~pg~~~~~H~H-~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~G-D~i~ip~g~~H~~~N~g~ 128 (181)
-|++...+|.| ++..+.+.|++|++.+..-++. |....+..+.+. +.-++|++..|.....++
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~--g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~ 83 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTED--GEELSEHIFDAENQPPFIEPQAWHRIEAASD 83 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCC--CCeeeEEEEecCCCCceeCCcceEEEEEcCC
Confidence 46677888998 4677999999999999876442 122233455554 565799999999987643
No 83
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=94.14 E-value=0.14 Score=36.18 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=21.2
Q ss_pred eEeEEecCCcEEEEcCCCeEEEEeCCCC
Q 048538 102 LIAKVLKKGDVFVFPIGLIHFQFNIGKT 129 (181)
Q Consensus 102 ~~~~~l~~GD~i~ip~g~~H~~~N~g~~ 129 (181)
..+...+|||.|++|+|..|+..|.|+.
T Consensus 80 ~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 80 VYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp -EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred cccceECCCCEEEECCCceEEEEeCCce
Confidence 3467899999999999999999999863
No 84
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=93.88 E-value=0.42 Score=38.33 Aligned_cols=84 Identities=21% Similarity=0.187 Sum_probs=56.2
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccC---C---C-CeeEeE-------EecCCc-EEEEcC--
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNE---L---N-NTLIAK-------VLKKGD-VFVFPI-- 117 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~---~---~-~~~~~~-------~l~~GD-~i~ip~-- 117 (181)
.+++..+-++||+..|+|-|++=.-+.-||.|++.+.--+--. + + .+.... .-.+++ .+..|.
T Consensus 43 ~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~~g 122 (200)
T PF07847_consen 43 DFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPTSG 122 (200)
T ss_pred CcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccCCC
Confidence 5678888899999999999994444556999999886543110 0 0 000001 122333 445555
Q ss_pred CCeEEEEeCCCCcEEEEEEEcC
Q 048538 118 GLIHFQFNIGKTNAVAIAALSS 139 (181)
Q Consensus 118 g~~H~~~N~g~~~~~~l~v~~~ 139 (181)
|-.|++.+.+ .+|-++.|+..
T Consensus 123 gNiH~f~a~~-~p~AflDIL~P 143 (200)
T PF07847_consen 123 GNIHEFTALT-GPCAFLDILAP 143 (200)
T ss_pred CeeEEEEeCC-CCeEEEEEccC
Confidence 4899999986 89999999884
No 85
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=93.64 E-value=0.77 Score=31.59 Aligned_cols=61 Identities=16% Similarity=0.033 Sum_probs=41.1
Q ss_pred CcCCCccCC-CCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCC
Q 048538 67 GQNPPHTHP-RATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGK 128 (181)
Q Consensus 67 ~~~~~H~H~-~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~ 128 (181)
+....|.-. +....+.|++|++.+..-++.+ +.-.....+.+|+..++++.+.|.+...++
T Consensus 14 ~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~-~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 14 ALLERHNTKAGTWGKLRVLEGELKFYGLDEEG-EEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp GGGSSBCCSTTEEEEEEEEESEEEEEEESSTT--SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred HHHhhcCCCCCeEEEEEEEeeEEEEEEECCCC-CceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 344456444 2335578999999998765421 011346789999999999999999998764
No 86
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=93.43 E-value=2.6 Score=31.87 Aligned_cols=103 Identities=12% Similarity=0.049 Sum_probs=64.4
Q ss_pred cCCCeEEEEeecCCCCCC------ccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeC-eEEEEEEeccCCCCeeEeEE
Q 048538 34 NRLGFSVKIANVEQIPGL------NTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEG-TLYVGFVTSNELNNTLIAKV 106 (181)
Q Consensus 34 ~~~g~~~~~~~~~~~p~l------~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G-~~~~~v~~~~~~~~~~~~~~ 106 (181)
++-||..++.+....... .....+..+.-+.++....+|.-. ++|+.+-..| .+++.+..++ ++..+..
T Consensus 13 HpEGG~fret~rs~~~~~~~~~~~~R~~~T~Iy~LL~~~~~S~~Hrv~-sdEiw~~~~G~pl~l~~i~~d---g~~~~~~ 88 (139)
T PF06172_consen 13 HPEGGYFRETYRSPETVSPPSLGPSRSASTSIYYLLTPGEFSAWHRVD-SDEIWHFHAGDPLELHLIDPD---GSYETVV 88 (139)
T ss_dssp BTTSSEEEEEEE-SSEEECCTCSSCEES-EEEEEEEETTBEEEEEEES-SEEEEEEEEES-EEEEEECTT---STEEEEE
T ss_pred CCCCccEEEEEECCCcccCCCCCCCcccceEEEEEEcCCCCCccEEcC-CCEEEEEEcCCCEEEEEEcCC---CCeEEEE
Confidence 556777777766542111 122455666778888888888766 8999999999 5777777654 3333445
Q ss_pred ecC----C--cEEEEcCCCeEEEEeCCCCcEEEEEEEcCC
Q 048538 107 LKK----G--DVFVFPIGLIHFQFNIGKTNAVAIAALSSQ 140 (181)
Q Consensus 107 l~~----G--D~i~ip~g~~H~~~N~g~~~~~~l~v~~~~ 140 (181)
|.+ | =.++||+|+....+..+...-.++.....+
T Consensus 89 LG~d~~~g~~~q~vVp~G~W~aa~l~~~~~y~Lvsc~VaP 128 (139)
T PF06172_consen 89 LGPDLAAGERPQVVVPAGTWQAAELEPEGDYSLVSCTVAP 128 (139)
T ss_dssp ESSTTCTTEBSEEEE-TTSEEEEEECESSSEEEEEEEESS
T ss_pred ECCCCCCCceEEEEECCCEEEEccccCCCCEEEEEEEEcC
Confidence 543 3 368899999998865555555555544433
No 87
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=93.39 E-value=0.53 Score=30.66 Aligned_cols=57 Identities=16% Similarity=0.076 Sum_probs=42.6
Q ss_pred EEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEe
Q 048538 61 IDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFN 125 (181)
Q Consensus 61 v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N 125 (181)
+++.||....++-.. +.+ +.|.+|++-++...+ ...+-|++||.+.+++|..-++..
T Consensus 2 ~~L~~g~~~~lr~~~-~~~-l~v~~G~vWlT~~g~------~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 2 FELAPGETLSLRAAA-GQR-LRVESGRVWLTREGD------PDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EEeCCCceEEeEcCC-CcE-EEEccccEEEECCCC------CCCEEECCCCEEEeCCCCEEEEEe
Confidence 457788777766555 444 889999998887533 225999999999999998766654
No 88
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=93.23 E-value=1.1 Score=33.37 Aligned_cols=46 Identities=15% Similarity=-0.015 Sum_probs=35.9
Q ss_pred CcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCc
Q 048538 77 ATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTN 130 (181)
Q Consensus 77 ~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~ 130 (181)
..-+.+.++|.+.+..++ ....+.|||+++++++.++.+...++..
T Consensus 55 ~~~l~~~~~G~~~~~~~g--------~~~~~~pg~~~l~d~~~~~~~~~~~~~~ 100 (172)
T PF14525_consen 55 HYLLVLPLSGSARIEQGG--------REVELAPGDVVLLDPGQPYRLEFSAGCR 100 (172)
T ss_pred EEEEEEEccCCEEEEECC--------EEEEEcCCeEEEEcCCCCEEEEECCCcc
Confidence 456677889999887642 2699999999999999999887654433
No 89
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.05 E-value=0.097 Score=47.07 Aligned_cols=64 Identities=22% Similarity=0.249 Sum_probs=47.2
Q ss_pred EcCCC-cCCCccCCCCcEEEEEEeCeEEEEEEeccC-----------------CCCeeEeEEecCCcEEEEcCCCeEEEE
Q 048538 63 YAPYG-QNPPHTHPRATDILAVLEGTLYVGFVTSNE-----------------LNNTLIAKVLKKGDVFVFPIGLIHFQF 124 (181)
Q Consensus 63 l~pg~-~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~-----------------~~~~~~~~~l~~GD~i~ip~g~~H~~~ 124 (181)
-+||+ ..+|||-. -+-|+.-++|+=...+..+.. .|+-.....|+|||++|||.|..|...
T Consensus 324 TPagSqGfaPHyDd-IeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~ 402 (629)
T KOG3706|consen 324 TPAGSQGFAPHYDD-IEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQAD 402 (629)
T ss_pred cCCCCCCCCCchhh-hhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeecc
Confidence 36666 47999998 778888999987776654321 133334467999999999999999987
Q ss_pred eCC
Q 048538 125 NIG 127 (181)
Q Consensus 125 N~g 127 (181)
...
T Consensus 403 t~~ 405 (629)
T KOG3706|consen 403 TPA 405 (629)
T ss_pred ccc
Confidence 654
No 90
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=93.01 E-value=0.76 Score=38.66 Aligned_cols=82 Identities=18% Similarity=0.200 Sum_probs=54.9
Q ss_pred ceEEEEEEEcCCC---cCCCccCCCCcEEEE---EEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCC
Q 048538 55 GISAVRIDYAPYG---QNPPHTHPRATDILA---VLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGK 128 (181)
Q Consensus 55 ~~~~~~v~l~pg~---~~~~H~H~~~~E~~y---Vl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~ 128 (181)
.+.+....+.||+ ..|||.|++..|.+| +=.+...+++.++- ++.....++-+|.+++|+-..|.-.- .
T Consensus 174 qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~p---dETrh~~v~n~~aVisP~wsih~g~g--t 248 (276)
T PRK00924 174 QLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEP---QETRHIVVHNEQAVISPSWSIHSGVG--T 248 (276)
T ss_pred cEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCc---cceeeEEEECCCEEECCCcceecCcC--c
Confidence 5667777789998 469999996666433 33444444443221 33223789999999999999998543 4
Q ss_pred CcEEEEEEEcCCC
Q 048538 129 TNAVAIAALSSQN 141 (181)
Q Consensus 129 ~~~~~l~v~~~~~ 141 (181)
..-.||+.+..+|
T Consensus 249 ~~y~fiw~m~gen 261 (276)
T PRK00924 249 SNYTFIWGMAGEN 261 (276)
T ss_pred cccEEEEEecccC
Confidence 5567777776554
No 91
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=92.89 E-value=2.4 Score=35.32 Aligned_cols=96 Identities=19% Similarity=0.265 Sum_probs=52.9
Q ss_pred EEEEeecCCCCCCccCceEEEEEEEcCCC---cCCCccCCCC---------cEEEEE-Ee---CeEEEEEEeccCCCCee
Q 048538 39 SVKIANVEQIPGLNTLGISAVRIDYAPYG---QNPPHTHPRA---------TDILAV-LE---GTLYVGFVTSNELNNTL 102 (181)
Q Consensus 39 ~~~~~~~~~~p~l~~~~~~~~~v~l~pg~---~~~~H~H~~~---------~E~~yV-l~---G~~~~~v~~~~~~~~~~ 102 (181)
.+......+.+. .-.+-+..+. .|++ .-|||.|+ . +|++|- +. |-+...+..+.. ...
T Consensus 136 ~V~~~i~~~~~~--~~~Lv~get~-~~~G~WsSyPPH~Hd-~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~--~~d 209 (261)
T PF04962_consen 136 TVRNIIDPNVPP--ASRLVVGETI-TPGGNWSSYPPHKHD-RRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDP--QLD 209 (261)
T ss_dssp EEEEEESTTT-----SS-EEEEEE-ETTT-EES-SEEE-C-CEEEESEECTEEEEEEESSTTS-EEEEEEE-TTS--SSE
T ss_pred EEEEeeCCCCcc--cceEEEEEEE-eCCCccCCcCCccCC-CcCCCccccceeEEEEEccCcccEEEEEEECCCC--CCc
Confidence 366666666552 2256667665 5555 46999999 5 566543 22 323322222211 234
Q ss_pred EeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcCCC
Q 048538 103 IAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALSSQN 141 (181)
Q Consensus 103 ~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v~~~~~ 141 (181)
..+.++-||.+.+|.| .|-..........+|+++...+
T Consensus 210 ~~~~V~~~d~V~iP~g-yHp~~aapGy~~Yylw~maG~~ 247 (261)
T PF04962_consen 210 EHYVVRNGDAVLIPSG-YHPVVAAPGYDMYYLWVMAGEN 247 (261)
T ss_dssp EEEEEETTEEEEESTT-B-SEEEEEESSEEEEEEEESSS
T ss_pred EEEEEECCCEEEeCCC-CCCcCcCCCcCcEEEEEEEcCC
Confidence 4788999999999999 4443332235566888887665
No 92
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=92.81 E-value=0.32 Score=34.19 Aligned_cols=67 Identities=28% Similarity=0.355 Sum_probs=30.5
Q ss_pred EEcCCCcCCCccCCCCc--EEEEEE----eCeEEEEEEeccC---------------CCCeeEeEEecCCcEEEEcCCCe
Q 048538 62 DYAPYGQNPPHTHPRAT--DILAVL----EGTLYVGFVTSNE---------------LNNTLIAKVLKKGDVFVFPIGLI 120 (181)
Q Consensus 62 ~l~pg~~~~~H~H~~~~--E~~yVl----~G~~~~~v~~~~~---------------~~~~~~~~~l~~GD~i~ip~g~~ 120 (181)
..++|+...+|.|+++. -++||- .|.+.+. ++.. ..........++||++++|+.+.
T Consensus 6 i~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~ 83 (101)
T PF13759_consen 6 IYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFH--DPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLW 83 (101)
T ss_dssp EE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE---TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSE
T ss_pred EeCCCCccCceECCCcCEEEEEEEECCCCCCceeee--CCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCE
Confidence 35788888999998432 233443 2333332 2210 00112346789999999999999
Q ss_pred EEEE-eCCCCc
Q 048538 121 HFQF-NIGKTN 130 (181)
Q Consensus 121 H~~~-N~g~~~ 130 (181)
|... |.++++
T Consensus 84 H~v~p~~~~~~ 94 (101)
T PF13759_consen 84 HGVPPNNSDEE 94 (101)
T ss_dssp EEE----SSS-
T ss_pred EeccCcCCCCC
Confidence 9985 455544
No 93
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=92.70 E-value=0.27 Score=42.83 Aligned_cols=65 Identities=23% Similarity=0.241 Sum_probs=45.2
Q ss_pred EEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCC--------------CCeeEeEEecCCcEEEEcCCCeEEEEeCC
Q 048538 62 DYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNEL--------------NNTLIAKVLKKGDVFVFPIGLIHFQFNIG 127 (181)
Q Consensus 62 ~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~--------------~~~~~~~~l~~GD~i~ip~g~~H~~~N~g 127 (181)
-..+|+.+.+|+-. -+-+++-..|+=+.+++..... ..-....++.|||++|+|++.+|+-...+
T Consensus 125 ~a~~GGgvg~H~D~-YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae~ 203 (383)
T COG2850 125 FAAPGGGVGPHFDQ-YDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAED 203 (383)
T ss_pred EecCCCccCccccc-hheeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCcccc
Confidence 46889999999988 5566666666666666432110 11122356999999999999999987753
No 94
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=92.47 E-value=1 Score=39.65 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=40.5
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEE
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQF 124 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~ 124 (181)
.+.+.++.+..+.. .....+..++.|++|++++... + .+..|++|+++++|++......
T Consensus 320 ~F~~~~~~l~~~~~---~~~~~~~~Illv~~G~~~i~~~------~--~~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQPT---TLSQQSAAILFCVEGEAVLWKG------E--QQLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCceE---EecCCCcEEEEEEcceEEEEeC------C--eEEEECCCCEEEEeCCCccEEE
Confidence 34566666655422 2222367999999999998642 1 2588999999999998766543
No 95
>PLN02288 mannose-6-phosphate isomerase
Probab=92.45 E-value=0.46 Score=41.95 Aligned_cols=59 Identities=22% Similarity=0.271 Sum_probs=40.9
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCe
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLI 120 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~ 120 (181)
.+.+.++++.++.....-.+. +..++.|++|++++... +...+..+++|+++++|++..
T Consensus 333 eF~v~~~~l~~~~~~~~~~~~-gp~Illv~~G~~~i~~~------~~~~~~~l~~G~~~fv~a~~~ 391 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAVP-GPSVFLVIEGEGVLSTG------SSEDGTAAKRGDVFFVPAGTE 391 (394)
T ss_pred ceEEEEEEeCCCCeEeecCCC-CCEEEEEEcCEEEEecC------CccceEEEeceeEEEEeCCCc
Confidence 566777888777532222244 78999999999998542 111136699999999998753
No 96
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=92.39 E-value=0.59 Score=37.51 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=40.3
Q ss_pred EEEcCCCcCCCccCCCCc--EEEEEE----eCeEEEEEEeccC---C------------CCeeEeEEecCCcEEEEcCCC
Q 048538 61 IDYAPYGQNPPHTHPRAT--DILAVL----EGTLYVGFVTSNE---L------------NNTLIAKVLKKGDVFVFPIGL 119 (181)
Q Consensus 61 v~l~pg~~~~~H~H~~~~--E~~yVl----~G~~~~~v~~~~~---~------------~~~~~~~~l~~GD~i~ip~g~ 119 (181)
..+++|+....|.|+++. -++||- .|.+.+. ++.. + ........-++|+++++|+-.
T Consensus 101 ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~--~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L 178 (201)
T TIGR02466 101 NILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFE--DPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWL 178 (201)
T ss_pred EEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEe--cCcchhhhccccccCccccccCccEEECCCCCeEEEECCCC
Confidence 446889999999999542 234544 2333332 1110 0 000012345899999999999
Q ss_pred eEEEE-eCCCCc
Q 048538 120 IHFQF-NIGKTN 130 (181)
Q Consensus 120 ~H~~~-N~g~~~ 130 (181)
.|... |.++++
T Consensus 179 ~H~v~p~~~~~~ 190 (201)
T TIGR02466 179 RHEVPPNESEEE 190 (201)
T ss_pred ceecCCCCCCCC
Confidence 99975 555444
No 97
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=91.79 E-value=1.5 Score=37.00 Aligned_cols=59 Identities=27% Similarity=0.267 Sum_probs=41.1
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEE
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQF 124 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~ 124 (181)
.+.+.++++..... ...+. +..+++|++|++++... + ....+++|+.+++|++......
T Consensus 234 ~F~~~~~~~~~~~~--~~~~~-~~~il~v~~G~~~i~~~------~--~~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 234 YFSVYKWDISGKAE--FIQQQ-SALILSVLEGSGRIKSG------G--KTLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CeEEEEEEeCCcee--eccCC-CcEEEEEEcceEEEEEC------C--EEEEEecccEEEEccCCccEEE
Confidence 55667777654321 11234 77899999999998642 2 2588999999999999865443
No 98
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.78 E-value=2.4 Score=37.03 Aligned_cols=55 Identities=13% Similarity=0.064 Sum_probs=42.8
Q ss_pred CccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEE
Q 048538 71 PHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAI 134 (181)
Q Consensus 71 ~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l 134 (181)
..+...+++++|+-+|++++.-+-. ...+++||..+||+|+....+-.+.+ ++..
T Consensus 140 ~f~NADge~Livpq~G~l~l~te~G--------~l~v~pgeiavIPRG~~frve~~~~~-~rgy 194 (427)
T COG3508 140 FFRNADGELLIVPQQGELRLKTELG--------VLEVEPGEIAVIPRGTTFRVELKDGE-ARGY 194 (427)
T ss_pred hhhcCCCCEEEEeecceEEEEEeec--------eEEecCCcEEEeeCCceEEEEecCCc-eEEE
Confidence 3455568999999999999875432 58999999999999999998776433 4444
No 99
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=90.97 E-value=1.4 Score=34.22 Aligned_cols=72 Identities=24% Similarity=0.243 Sum_probs=46.0
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCC---CeeEeEEecCCcEEEEcCCCeEEEEeCCCC
Q 048538 56 ISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELN---NTLIAKVLKKGDVFVFPIGLIHFQFNIGKT 129 (181)
Q Consensus 56 ~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~---~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~ 129 (181)
+++..+++.||...++|.|. -.-++-|+.|.=.-.+..-...+ -++......+|++- +-+|..|.+.|.+..
T Consensus 73 ltV~~~t~~PG~~~p~HnH~-~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sd 147 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHL-MWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSD 147 (191)
T ss_pred EEEEEEEeCCCcccCCcccc-hheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCC
Confidence 46788999999999999999 77888899885332222111000 01123456677766 444777777776643
No 100
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=90.58 E-value=2.7 Score=33.68 Aligned_cols=123 Identities=17% Similarity=0.175 Sum_probs=73.6
Q ss_pred eEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEE
Q 048538 56 ISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIA 135 (181)
Q Consensus 56 ~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~ 135 (181)
.......+++|...-..-.+ ...+++|++|.+.+...+.+ |++.....+.+||.+-...+.++.....-.+++.++.
T Consensus 36 ~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~--G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~ 112 (230)
T PRK09391 36 LVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSD--GRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRL 112 (230)
T ss_pred ceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCC--CcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEE
Confidence 34566778888776544344 67889999999998875443 2433445579999887766655443333345555553
Q ss_pred EEcC-------CCCceee----------------------------eecch------hcC----CCCCCHHHHHHHcCCC
Q 048538 136 ALSS-------QNPGVIT----------------------------IANSV------FGA----NPPINPDFLAKAFQLD 170 (181)
Q Consensus 136 v~~~-------~~~g~~~----------------------------~~~s~------~~~----~~~~~~e~l~~~~~v~ 170 (181)
+-.. .+|.... ++.-+ .+. .-+++.+.+|..+|++
T Consensus 113 i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGis 192 (230)
T PRK09391 113 IKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVAAFLLEMDERLGGAGMMALPMSRRDIADYLGLT 192 (230)
T ss_pred EEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCEEEecCCHHHHHHHHCCC
Confidence 3221 1221110 00000 000 1147889999999999
Q ss_pred HHHHHHHHhcC
Q 048538 171 VDVVKDLEAKF 181 (181)
Q Consensus 171 ~~~~~~~~~~~ 181 (181)
++.+-++.+++
T Consensus 193 retlsR~L~~L 203 (230)
T PRK09391 193 IETVSRALSQL 203 (230)
T ss_pred HHHHHHHHHHH
Confidence 99988877653
No 101
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=90.40 E-value=2.9 Score=32.56 Aligned_cols=120 Identities=14% Similarity=0.136 Sum_probs=69.6
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcC----CCeEEEEeCCCCcEEEE
Q 048538 59 VRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPI----GLIHFQFNIGKTNAVAI 134 (181)
Q Consensus 59 ~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~----g~~H~~~N~g~~~~~~l 134 (181)
....+++|...-..-.+ ...+++|++|.+.+.....+ |++.....+.+||.+-... ..++...-...+++.++
T Consensus 21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~--g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~ 97 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEE--GKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVA 97 (211)
T ss_pred eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCC--CCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEE
Confidence 45678888766444344 67899999999998765432 2433446689999984432 22232222224556666
Q ss_pred EEEc-------CCCCceee----------------------------eecchh------c---C----CCCCCHHHHHHH
Q 048538 135 AALS-------SQNPGVIT----------------------------IANSVF------G---A----NPPINPDFLAKA 166 (181)
Q Consensus 135 ~v~~-------~~~~g~~~----------------------------~~~s~~------~---~----~~~~~~e~l~~~ 166 (181)
.+-. ..+|.... ++..++ . . .-+++.+.+|..
T Consensus 98 ~i~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~ 177 (211)
T PRK11753 98 EISYKKFRQLIQVNPDILMALSAQMARRLQNTSRKVGDLAFLDVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRI 177 (211)
T ss_pred EEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHH
Confidence 5422 11222110 000000 0 0 014888999999
Q ss_pred cCCCHHHHHHHHhcC
Q 048538 167 FQLDVDVVKDLEAKF 181 (181)
Q Consensus 167 ~~v~~~~~~~~~~~~ 181 (181)
+|++++.+-++.+++
T Consensus 178 lG~tr~tvsR~l~~l 192 (211)
T PRK11753 178 VGCSREMVGRVLKML 192 (211)
T ss_pred hCCCHHHHHHHHHHH
Confidence 999999999887763
No 102
>PHA02984 hypothetical protein; Provisional
Probab=89.96 E-value=3.7 Score=34.41 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=41.7
Q ss_pred EEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 048538 80 ILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALS 138 (181)
Q Consensus 80 ~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v~~ 138 (181)
++.+|+|+..+....+ ++.....+++||.+.+.-+.-|.... .++.++++++.-
T Consensus 96 FvlCl~G~~~I~~~~~----~~~is~~I~kGeaf~md~~t~h~i~T-~~knl~L~Vi~y 149 (286)
T PHA02984 96 FVLCLNGKTSIECFNK----GSKITNTIKKGEAFTLNLKTKYVTTT-KDKNLHLAVITY 149 (286)
T ss_pred EEEEcCCeEEEEEecC----CceeeeEEecCceEEEEccceEEEEe-CCCceEEEEEEE
Confidence 4567899999988644 45567889999999999999999765 356677666543
No 103
>PHA02890 hypothetical protein; Provisional
Probab=88.15 E-value=5.4 Score=33.23 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=40.4
Q ss_pred EEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 048538 80 ILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALS 138 (181)
Q Consensus 80 ~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v~~ 138 (181)
++.+|+|+..+.+..+ ++.....+++||.+.+.-+..|.... +.++++++.-
T Consensus 95 FVlCL~Gs~~In~~~~----d~~iS~~I~kGeaF~mdv~t~H~i~T---Knl~L~Viky 146 (278)
T PHA02890 95 FVACIEGSCKINVNIG----DREISDHIHENQGFIMDVGLDHAIDS---DNVGLFITKF 146 (278)
T ss_pred EEEEeCCeEEEEEecC----CceeeeeeecCceEEEEccceEEEEc---cceeEEEEEE
Confidence 3457899999988644 45567889999999999999999876 5566665443
No 104
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=87.96 E-value=5 Score=33.83 Aligned_cols=70 Identities=11% Similarity=-0.021 Sum_probs=46.6
Q ss_pred EEEcCCCcCCCccCCCCcEE-EEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEe--CCCCcEEEEEEE
Q 048538 61 IDYAPYGQNPPHTHPRATDI-LAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFN--IGKTNAVAIAAL 137 (181)
Q Consensus 61 v~l~pg~~~~~H~H~~~~E~-~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N--~g~~~~~~l~v~ 137 (181)
+.++.+....-.+.....|+ +..|.|++++.+++ +++.+.+.|.+|+|.|..-.... ....++++....
T Consensus 57 l~l~~~~~~~~~~fl~rrE~giV~lgG~~~V~vdG--------~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~s 128 (276)
T PRK00924 57 LKLEAGKQLGVSYFLERRELGIINIGGAGTVTVDG--------ETYELGHRDALYVGKGAKEVVFASADAANPAKFYLNS 128 (276)
T ss_pred eecccCccccceeecCCcEEEEEEccceEEEEECC--------EEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEc
Confidence 34444444433344436676 56889999998752 26889999999999998865543 234678877654
Q ss_pred c
Q 048538 138 S 138 (181)
Q Consensus 138 ~ 138 (181)
.
T Consensus 129 A 129 (276)
T PRK00924 129 A 129 (276)
T ss_pred c
Confidence 4
No 105
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=86.53 E-value=6.1 Score=32.94 Aligned_cols=73 Identities=12% Similarity=-0.034 Sum_probs=47.2
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEE-EEEEeCeEEEEEEeccCCCCeeEeEEecCC--------cEEEEcCCCeEEEEe
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDI-LAVLEGTLYVGFVTSNELNNTLIAKVLKKG--------DVFVFPIGLIHFQFN 125 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~-~yVl~G~~~~~v~~~~~~~~~~~~~~l~~G--------D~i~ip~g~~H~~~N 125 (181)
-+.+..++|++|.....-.. ..|+ +.+|+|++++.+++ ...+.+..- |.+|+|.|..-.+.+
T Consensus 26 ~~~~~~l~L~~g~~~~~~~~--~~E~~vv~l~G~~~v~~~g-------~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a 96 (261)
T PF04962_consen 26 YMGFGVLRLEAGESLEFELE--RRELGVVNLGGKATVTVDG-------EEFYELGGRESVFDGPPDALYVPRGTKVVIFA 96 (261)
T ss_dssp CBECCCEEEECCHCCCCCCC--SEEEEEEEESSSEEEEETT-------EEEEEE-TTSSGGGS--EEEEE-TT--EEEEE
T ss_pred ccceEEEEecCCCEEeccCC--CcEEEEEEeCCEEEEEeCC-------ceEEEecccccccCCCCcEEEeCCCCeEEEEE
Confidence 34456688999887654433 3455 67899999999842 125666666 999999999988888
Q ss_pred CCCCcEEEEEEEc
Q 048538 126 IGKTNAVAIAALS 138 (181)
Q Consensus 126 ~g~~~~~~l~v~~ 138 (181)
.++ +++...-+
T Consensus 97 ~~~--ae~~~~sa 107 (261)
T PF04962_consen 97 STD--AEFAVCSA 107 (261)
T ss_dssp SST--EEEEEEEE
T ss_pred cCC--CEEEEEcc
Confidence 544 66665433
No 106
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=85.76 E-value=2 Score=28.17 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=30.6
Q ss_pred EEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEE
Q 048538 62 DYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVF 113 (181)
Q Consensus 62 ~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i 113 (181)
++++|...-..-.+ ...+++|++|.+.+.....+ ++......+.+||.+
T Consensus 3 ~~~~g~~i~~~g~~-~~~~~~i~~G~v~~~~~~~~--~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQGDP-CDHIYIILSGEVKVSSINED--GKEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEETTSB-ESEEEEEEESEEEEEEETTT--SEEEEEEEEETTEEE
T ss_pred EECCCCEEEeCCCc-CCEEEEEEECceEEEeceec--ceeeeecceeeeccc
Confidence 35555543222223 67999999999999876543 121224568888887
No 107
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=85.38 E-value=5 Score=31.00 Aligned_cols=118 Identities=15% Similarity=0.095 Sum_probs=66.8
Q ss_pred EEEEcCCCcCCCccCC-CCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcC--CCeEEEEeCCCCcEEEEEE
Q 048538 60 RIDYAPYGQNPPHTHP-RATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPI--GLIHFQFNIGKTNAVAIAA 136 (181)
Q Consensus 60 ~v~l~pg~~~~~H~H~-~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~--g~~H~~~N~g~~~~~~l~v 136 (181)
...+++|...-.---+ ....+++|++|.+.+...+.+ |++.....+.|||++-.+. +.++.....-.++++++.+
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~--G~e~~l~~~~~Gd~~G~~~~~~~~~~~~~~A~~~~~v~~i 85 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDE--GNALTLRYVRPGEYFGEEALAGAERAYFAEAVTDSRIDVL 85 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCC--CCEEEEEEecCCCeechHHhcCCCCCceEEEcCceEEEEE
Confidence 4567777654332221 146789999999999876543 3444556689999875542 1222221112355666554
Q ss_pred EcCC-CCcee-----------------------------------eeecc---------hhcCCCCCCHHHHHHHcCCCH
Q 048538 137 LSSQ-NPGVI-----------------------------------TIANS---------VFGANPPINPDFLAKAFQLDV 171 (181)
Q Consensus 137 ~~~~-~~g~~-----------------------------------~~~~s---------~~~~~~~~~~e~l~~~~~v~~ 171 (181)
-... ++... .+++. .+ .-+++.+.+|..+|+++
T Consensus 86 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~--~~~~t~~~iA~~lG~tr 163 (202)
T PRK13918 86 NPALMSAEDNLVLTQHLVRTLARAYESIYRLVGQRLKNRIAAALLELSDTPLATQEDSGET--MIYATHDELAAAVGSVR 163 (202)
T ss_pred EHHHcChhhHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCCCCCCeE--EecCCHHHHHHHhCccH
Confidence 2110 11000 00110 01 12589999999999999
Q ss_pred HHHHHHHhcC
Q 048538 172 DVVKDLEAKF 181 (181)
Q Consensus 172 ~~~~~~~~~~ 181 (181)
+.+-++.+++
T Consensus 164 etvsR~l~~l 173 (202)
T PRK13918 164 ETVTKVIGEL 173 (202)
T ss_pred HHHHHHHHHH
Confidence 9998887764
No 108
>COG1741 Pirin-related protein [General function prediction only]
Probab=85.23 E-value=22 Score=30.01 Aligned_cols=99 Identities=16% Similarity=0.081 Sum_probs=55.4
Q ss_pred CCCccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCC
Q 048538 49 PGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGK 128 (181)
Q Consensus 49 p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~ 128 (181)
|..... +.+..+.+.+|+....+ =.+-.-++||++|++++. +. ....+|.+.+..|.--.....++
T Consensus 167 pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~--g~----------~~~~~~~l~i~~g~~i~l~a~~~ 232 (276)
T COG1741 167 PVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN--GQ----------HETDGDGLAILDGDEITLVADSP 232 (276)
T ss_pred ccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc--cc----------ccccccceEEecCCeEEEEecCC
Confidence 433334 66777888999887766 222346799999977763 11 11344444444444333444456
Q ss_pred CcEEEEEEEcCCCCc--eeeeecchhcCCCCCCHHHHHHHc
Q 048538 129 TNAVAIAALSSQNPG--VITIANSVFGANPPINPDFLAKAF 167 (181)
Q Consensus 129 ~~~~~l~v~~~~~~g--~~~~~~s~~~~~~~~~~e~l~~~~ 167 (181)
..+++|.+ ..+..+ .+..++ |-. -++|.+++++
T Consensus 233 ~~a~vLL~-~g~P~~~~~~~~g~--fV~---~s~e~i~~a~ 267 (276)
T COG1741 233 AGARVLLL-DGPPLGEPIVIYGP--FVM---NSKEEIEQAK 267 (276)
T ss_pred CCeEEEEE-cCCCCCCceeEECC--ccc---CCHHHHHHHH
Confidence 66888754 433212 222333 433 4677777765
No 109
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=85.05 E-value=3.3 Score=35.49 Aligned_cols=57 Identities=23% Similarity=0.153 Sum_probs=39.1
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEE
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHF 122 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~ 122 (181)
.+++.++.+..-... . .+. +..+++|++|++++... +.+..|++|+++++|+...-+
T Consensus 241 ~F~l~~~~i~~~~~~-~-~~~-~~~il~v~eG~~~l~~~--------~~~~~l~~G~s~~ipa~~~~~ 297 (312)
T COG1482 241 DFALYKWDISGTAEF-I-KQE-SFSILLVLEGEGTLIGG--------GQTLKLKKGESFFIPANDGPY 297 (312)
T ss_pred ceEEEEEeccChhhh-c-cCC-CcEEEEEEcCeEEEecC--------CEEEEEcCCcEEEEEcCCCcE
Confidence 445555555431111 1 133 78999999999999754 237999999999999985443
No 110
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=84.63 E-value=0.85 Score=39.03 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.1
Q ss_pred eEEecCCcEEEEcCCCeEEEE
Q 048538 104 AKVLKKGDVFVFPIGLIHFQF 124 (181)
Q Consensus 104 ~~~l~~GD~i~ip~g~~H~~~ 124 (181)
...++|||.+++|+|++|.+.
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~ 179 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYL 179 (312)
T ss_pred EEecCCCCEEEecCCCceeec
Confidence 578999999999999999864
No 111
>PHA00672 hypothetical protein
Probab=84.50 E-value=6.3 Score=29.49 Aligned_cols=71 Identities=14% Similarity=0.025 Sum_probs=54.8
Q ss_pred CceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEE
Q 048538 54 LGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVA 133 (181)
Q Consensus 54 ~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~ 133 (181)
.|++...++++.|....--.|. -+. +.+++|.+++..+ . + ...|+.=-++.-|+|.....+.-.|+....
T Consensus 45 ~GvYARei~IPkGt~LtG~~hk-f~~-~ii~sG~itV~td-g----e---~~rl~g~~~i~~~aG~KragyAHeDT~wt~ 114 (152)
T PHA00672 45 AGVYARTIRIPAGVALTGALIK-VST-VLIFSGHATVFIG-G----E---AVELRGYHVIPASAGRKQAFVAHADTDLTM 114 (152)
T ss_pred cceeEEEEeccCceeeeeeeeE-eeE-EEEecccEEEEeC-C----c---EEEEecceeeecCCCcccceeeeccceEEE
Confidence 3889999999999987666677 334 4899999999875 2 1 577888888888999998888876665544
Q ss_pred E
Q 048538 134 I 134 (181)
Q Consensus 134 l 134 (181)
+
T Consensus 115 ~ 115 (152)
T PHA00672 115 L 115 (152)
T ss_pred E
Confidence 4
No 112
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=84.01 E-value=0.84 Score=38.61 Aligned_cols=19 Identities=42% Similarity=0.558 Sum_probs=17.7
Q ss_pred eEEecCCcEEEEcCCCeEE
Q 048538 104 AKVLKKGDVFVFPIGLIHF 122 (181)
Q Consensus 104 ~~~l~~GD~i~ip~g~~H~ 122 (181)
...+++||++++|+|++|.
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred ccccCCCCEEEeCCCCccc
Confidence 4679999999999999998
No 113
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=83.70 E-value=3 Score=33.90 Aligned_cols=92 Identities=18% Similarity=0.193 Sum_probs=58.7
Q ss_pred cCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCc--ee
Q 048538 68 QNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALSSQNPG--VI 145 (181)
Q Consensus 68 ~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v~~~~~~g--~~ 145 (181)
....|| ++..++||+|+..-...+ +......+|||..+.+.|......-. +.+-++.---+--|. .+
T Consensus 113 hsGrh~---ad~y~tIL~G~~~~~~~g------~~~~evy~pGd~~~l~rg~a~~y~m~--~~tw~LEY~RG~IP~~lpf 181 (216)
T PF04622_consen 113 HSGRHW---ADDYFTILSGEQWAWSPG------SLEPEVYKPGDSHHLPRGEAKQYQMP--PGTWALEYGRGWIPSMLPF 181 (216)
T ss_pred CCcceE---eeeEEEEEEEEEEEEcCC------CCCceEeccCCEEEecCceEEEEEeC--CCeEEEEecCCchhhhhHH
Confidence 344444 567899999998865432 23368899999999999999887764 344444321121121 22
Q ss_pred eeecchhcCCCCCCHHHHHHHcCCCHHH
Q 048538 146 TIANSVFGANPPINPDFLAKAFQLDVDV 173 (181)
Q Consensus 146 ~~~~s~~~~~~~~~~e~l~~~~~v~~~~ 173 (181)
.+++.+++. .+-..+-++..+..++
T Consensus 182 ~~~dt~~sT---lDf~t~~~T~~~~~~~ 206 (216)
T PF04622_consen 182 GFADTLFST---LDFPTLYRTVYITARE 206 (216)
T ss_pred HHHHHHHhc---cchHHHHHHHHHHHHH
Confidence 345677775 7777777766665444
No 114
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=81.97 E-value=7.1 Score=26.10 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=34.5
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEE
Q 048538 59 VRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVF 115 (181)
Q Consensus 59 ~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~i 115 (181)
....+++|...-..--+ ...+++|++|.+.+.....+ |+......+.+|+.+-.
T Consensus 18 ~~~~~~~g~~l~~~~~~-~~~~~~i~~G~v~~~~~~~~--g~~~~~~~~~~g~~~g~ 71 (115)
T cd00038 18 EERRFPAGEVIIRQGDP-ADSLYIVLSGSVEVYKLDED--GREQIVGFLGPGDLFGE 71 (115)
T ss_pred eeeeeCCCCEEEcCCCC-CCeEEEEEeCEEEEEEECCC--CcEEEEEecCCccCcCh
Confidence 34557777755322223 56789999999998876432 23344566888888744
No 115
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=81.00 E-value=1.6 Score=38.51 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=18.8
Q ss_pred eEEecCCcEEEEcCCCeEEEE
Q 048538 104 AKVLKKGDVFVFPIGLIHFQF 124 (181)
Q Consensus 104 ~~~l~~GD~i~ip~g~~H~~~ 124 (181)
...|+|||.+++|+|.+|.+-
T Consensus 238 ~v~l~pGeaifipAg~~HAyl 258 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHAYL 258 (389)
T ss_pred EEEeCCCCEEEeCCCCCeEEc
Confidence 577999999999999999853
No 116
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=80.81 E-value=8.7 Score=25.73 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=35.4
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEc
Q 048538 60 RIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFP 116 (181)
Q Consensus 60 ~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip 116 (181)
...+++|...-. .......+++|++|.+.+...+.+ |+......+.+||.+-..
T Consensus 19 ~~~~~~g~~l~~-~g~~~~~~y~v~~G~v~~~~~~~~--g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 19 PVRYPAGEVIIR-QGDVGDSFYIILSGEVRVYKVLED--GREQILGILGPGDFFGEL 72 (120)
T ss_pred EEEeCCCCEEEe-CCCcCCcEEEEEeeEEEEEEECCC--CceEEEEeecCCceechh
Confidence 456788876533 333367889999999998765332 233345668899987443
No 117
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.63 E-value=6.9 Score=27.16 Aligned_cols=43 Identities=26% Similarity=0.152 Sum_probs=35.4
Q ss_pred CcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEe
Q 048538 77 ATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFN 125 (181)
Q Consensus 77 ~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N 125 (181)
..|...|+.|.+++.+.+. .......+|+.+.+|++....++-
T Consensus 41 ~~E~Mtvv~Gal~v~lpgs------~dWq~~~~Ge~F~VpgnS~F~lqV 83 (94)
T COG3123 41 APEEMTVVSGALTVLLPGS------DDWQVYTAGEVFNVPGNSEFDLQV 83 (94)
T ss_pred CceEEEEEeeEEEEEcCCC------cccEEecCCceEEcCCCCeEEEEE
Confidence 6788999999999988643 237889999999999998766554
No 118
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=80.49 E-value=6.3 Score=33.29 Aligned_cols=47 Identities=2% Similarity=-0.082 Sum_probs=37.8
Q ss_pred CcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCc
Q 048538 77 ATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTN 130 (181)
Q Consensus 77 ~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~ 130 (181)
..-++++.+|.+.+...++ ....+.++..+++|.+..|.+.|.....
T Consensus 38 ~~~li~v~~G~~~i~~~~g-------~~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 38 QSVLIKLTTGKISITTSSG-------EYITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred ceEEEEeccceEEEEeCCC-------ceEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 3578999999999875321 2589999999999999999999876433
No 119
>COG3542 Uncharacterized conserved protein [Function unknown]
Probab=78.57 E-value=28 Score=26.78 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=59.0
Q ss_pred cCCCeEEEEeecC---CCCCCc-cCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCe-EEEEEEeccCCCCeeEeEE--
Q 048538 34 NRLGFSVKIANVE---QIPGLN-TLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGT-LYVGFVTSNELNNTLIAKV-- 106 (181)
Q Consensus 34 ~~~g~~~~~~~~~---~~p~l~-~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~-~~~~v~~~~~~~~~~~~~~-- 106 (181)
++-||+..+.+.. +..+-. .......+.-+.++....+|.-. +.|+++...|. +.+.+..++ +...++
T Consensus 18 HpEGG~y~eT~rs~e~~~~G~~~R~~sT~IYyLLe~~~~s~~HRv~-a~eiwHf~ag~pl~~~l~~dG----~~~s~~LG 92 (162)
T COG3542 18 HPEGGFYRETFRSEEKDAAGGDVRNHSTAIYYLLEEDNISAWHRVT-ADEIWHFYAGAPLELHLSEDG----GAESFTLG 92 (162)
T ss_pred CCCCCceeeeeccccccCCCccccceeEEEEEEecCCccchheecc-hhheEEEecCCceEEEEEeCC----CeEEEEec
Confidence 6677876666652 222221 22234455668888877777666 89999998884 777766542 223343
Q ss_pred --ecCCcE--EEEcCCCeEE-EEeCCCCcEEEEEEEcCC
Q 048538 107 --LKKGDV--FVFPIGLIHF-QFNIGKTNAVAIAALSSQ 140 (181)
Q Consensus 107 --l~~GD~--i~ip~g~~H~-~~N~g~~~~~~l~v~~~~ 140 (181)
++.|+. ++||+|+... ....|. +-.++.....+
T Consensus 93 ~d~~~Ge~~Q~vVP~g~w~aS~~~~g~-~~tLVgCtVaP 130 (162)
T COG3542 93 PDLEKGERPQYVVPAGTWWASAVSLGE-DYTLVGCTVAP 130 (162)
T ss_pred ccccCCceeEEEEeCCcEEEEEEecCC-CceEEEEEecC
Confidence 566654 6789996554 344443 33344433333
No 120
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=78.14 E-value=11 Score=29.86 Aligned_cols=54 Identities=4% Similarity=-0.067 Sum_probs=36.2
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEc
Q 048538 60 RIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFP 116 (181)
Q Consensus 60 ~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip 116 (181)
...+++|...-..--+ ...+++|++|.+.+...+.+ |++.....+.+||++-..
T Consensus 33 ~~~~~kge~l~~~G~~-~~~~y~V~~G~v~v~~~~~~--G~e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 33 LFHFLAREYIVQEGQQ-PSYLFYLTRGRAKLYATLAN--GKVSLIDFFAAPCFIGEI 86 (226)
T ss_pred heeeCCCCEEEcCCCC-CceEEEEEeCEEEEEEECCC--CCEeeeeecCCCCeEEee
Confidence 3557777765433233 67899999999998876543 243344568999988654
No 121
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=77.72 E-value=27 Score=28.91 Aligned_cols=73 Identities=14% Similarity=0.032 Sum_probs=49.8
Q ss_pred ceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEecc-C-CCCeeEeEEecCCcEEEEcCCCeEEEEeCCC
Q 048538 55 GISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSN-E-LNNTLIAKVLKKGDVFVFPIGLIHFQFNIGK 128 (181)
Q Consensus 55 ~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~-~-~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~ 128 (181)
.+.+..+++.+|.....-.-. .+-++.+++|++++...+.. . -|++.-.+.=+|=|++|+|.|....+...++
T Consensus 28 YVGF~~~~L~~Ges~~~~~~~-~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~ 102 (270)
T COG3718 28 YVGFRLLRLAAGESATEETGD-RERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTD 102 (270)
T ss_pred eEEEEEEEccCCCcccccCCC-ceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEeecc
Confidence 456777889999887665444 45556789999998764321 0 1222223444567999999999988888654
No 122
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=77.61 E-value=6.2 Score=27.01 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=20.0
Q ss_pred ecCCcEEEEcC-CCeEEEEeCCCCcEEEE
Q 048538 107 LKKGDVFVFPI-GLIHFQFNIGKTNAVAI 134 (181)
Q Consensus 107 l~~GD~i~ip~-g~~H~~~N~g~~~~~~l 134 (181)
.++|+.+++++ ..+|.....+....++.
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v~~~~~R~~ 94 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPVGEGGRRYS 94 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE-EESEEEE
T ss_pred CCCCEEEEEeCCCCeecCcccCCCCCEEE
Confidence 88999999999 99999876633333333
No 123
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=76.56 E-value=4.8 Score=34.72 Aligned_cols=44 Identities=25% Similarity=0.306 Sum_probs=30.4
Q ss_pred eEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEcCCCCcee
Q 048538 102 LIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALSSQNPGVI 145 (181)
Q Consensus 102 ~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v~~~~~~g~~ 145 (181)
...-..+||+.++||.|..|.+.|...+-++---..+.++.+.+
T Consensus 262 PIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~V 305 (407)
T KOG2130|consen 262 PIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFV 305 (407)
T ss_pred CceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCcee
Confidence 34567899999999999999999976544333323334455544
No 124
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=74.57 E-value=24 Score=29.25 Aligned_cols=85 Identities=20% Similarity=0.190 Sum_probs=56.0
Q ss_pred ccCceEEEEEEEcCCCc---CCCccCCCCcEEEE---EEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEe
Q 048538 52 NTLGISAVRIDYAPYGQ---NPPHTHPRATDILA---VLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFN 125 (181)
Q Consensus 52 ~~~~~~~~~v~l~pg~~---~~~H~H~~~~E~~y---Vl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N 125 (181)
++-.+.+.+..++||+. .|.|.|.+..|..+ .-+-.-.+++.++- ++.....++--+.++-|+-..|.-.
T Consensus 173 ~scQL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP---~ETRHiv~~NEqAViSP~WSIHSG~- 248 (278)
T COG3717 173 ESCQLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQP---QETRHIVMHNEQAVISPPWSIHSGV- 248 (278)
T ss_pred hhhhhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCC---CceeEEEEeccceeeCCCceeecCc-
Confidence 33366788888999996 69999998888643 22334555554432 3333455777788888888888743
Q ss_pred CCCCcEEEEEEEcCCC
Q 048538 126 IGKTNAVAIAALSSQN 141 (181)
Q Consensus 126 ~g~~~~~~l~v~~~~~ 141 (181)
|...-.||+.+..+|
T Consensus 249 -GT~~YtFIWaMaGeN 263 (278)
T COG3717 249 -GTANYTFIWAMAGEN 263 (278)
T ss_pred -cccceEEEEEecccc
Confidence 345566777766554
No 125
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=72.02 E-value=14 Score=29.32 Aligned_cols=73 Identities=11% Similarity=0.087 Sum_probs=42.1
Q ss_pred EEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcC---CCeEEEEeCCCCcEEEEEE
Q 048538 60 RIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPI---GLIHFQFNIGKTNAVAIAA 136 (181)
Q Consensus 60 ~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~---g~~H~~~N~g~~~~~~l~v 136 (181)
...+++|...-. -......+++|++|.+.+....++ ++.....+.+||.+-..+ +.++...-.-.+++.++.+
T Consensus 32 ~~~~~~ge~l~~-~g~~~~~~~~v~~G~v~~~~~~~~---~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i 107 (236)
T PRK09392 32 LQRFPPGTMLIT-EGEPADFLFVVLDGLVELSASSQD---RETTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMI 107 (236)
T ss_pred eeecCCCCEEEe-CCCccceEEEEEeCEEEEEEcCCC---ceEEEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEEEE
Confidence 455777765532 233367899999999998764332 444456689999764321 2333222222355666544
No 126
>PLN02868 acyl-CoA thioesterase family protein
Probab=71.54 E-value=15 Score=32.31 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=36.0
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEE
Q 048538 59 VRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVF 115 (181)
Q Consensus 59 ~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~i 115 (181)
...++++|...-.--.+ ...+++|++|++++...+.+ ++.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd~-~~~lyiI~~G~V~v~~~~~~---ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGEP-GDGLYFIWKGEAEVSGPAEE---ESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCCc-CceEEEEEeCEEEEEEECCC---CcEEEEEeCCCCEeeh
Confidence 34567777765433344 67899999999998765432 2334466899998864
No 127
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=70.08 E-value=23 Score=27.31 Aligned_cols=68 Identities=19% Similarity=0.191 Sum_probs=38.2
Q ss_pred CCccCCCCcEEEEEEeCeE-EEEEEeccCC---CCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEE
Q 048538 70 PPHTHPRATDILAVLEGTL-YVGFVTSNEL---NNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAAL 137 (181)
Q Consensus 70 ~~H~H~~~~E~~yVl~G~~-~~~v~~~~~~---~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v~ 137 (181)
.+=.|+.+.|.+.-+.|+. .+.++...+. =++...+.+.+|+.+.+.+|++|...-.=++++.++++-
T Consensus 73 ~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~~~~~f~vv~ 144 (165)
T PF04115_consen 73 MLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLDEPADFLVVD 144 (165)
T ss_dssp EEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESSSEEEEEEEE
T ss_pred eeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccCCcceEEEEe
Confidence 3345777789999999987 4434433310 023456889999999999999998643334677777663
No 128
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=69.91 E-value=32 Score=25.95 Aligned_cols=53 Identities=17% Similarity=0.092 Sum_probs=41.1
Q ss_pred CcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEE---eCCCCcEEEEEEE
Q 048538 77 ATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQF---NIGKTNAVAIAAL 137 (181)
Q Consensus 77 ~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~---N~g~~~~~~l~v~ 137 (181)
..-++.|++|+=++.++++ .+.+.+|++++.+.+++-... ...++|...+.+-
T Consensus 23 ~p~i~~vlQG~K~~~~g~~--------~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l~l~ 78 (155)
T PF06719_consen 23 EPSICIVLQGSKRVHLGDQ--------VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLALSLE 78 (155)
T ss_pred CCeEEEEEeeeEEEEECCc--------eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEEEEE
Confidence 4578999999999988632 699999999999999987654 3446777666543
No 129
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=67.16 E-value=3.2 Score=36.36 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=41.7
Q ss_pred CCCcCCCc---cCCCCcEEEEEEeCeEEEEEEeccCC-------CC---------------eeEeEEecCCcEEEEcCCC
Q 048538 65 PYGQNPPH---THPRATDILAVLEGTLYVGFVTSNEL-------NN---------------TLIAKVLKKGDVFVFPIGL 119 (181)
Q Consensus 65 pg~~~~~H---~H~~~~E~~yVl~G~~~~~v~~~~~~-------~~---------------~~~~~~l~~GD~i~ip~g~ 119 (181)
.|+-.+.| +|. .-+...+-|.=..-+..++.+ |+ .-.+..-+||+.|++|+|.
T Consensus 207 ~gSwtp~HaDVf~s--~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFvPsGW 284 (427)
T KOG2131|consen 207 AGSWTPFHADVFHS--PSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFVPSGW 284 (427)
T ss_pred CCCCCccchhhhcC--CcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeeccCcc
Confidence 45667888 666 456667888766655544310 00 0011235799999999999
Q ss_pred eEEEEeCCCC
Q 048538 120 IHFQFNIGKT 129 (181)
Q Consensus 120 ~H~~~N~g~~ 129 (181)
.|+..|.+|+
T Consensus 285 ~hQV~NL~dT 294 (427)
T KOG2131|consen 285 HHQVLNLGDT 294 (427)
T ss_pred ccccccccce
Confidence 9999999874
No 130
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=67.13 E-value=4.5 Score=22.78 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=18.8
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhcC
Q 048538 158 INPDFLAKAFQLDVDVVKDLEAKF 181 (181)
Q Consensus 158 ~~~e~l~~~~~v~~~~~~~~~~~~ 181 (181)
++.+.++..+|.+++.+-++.+||
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l 26 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKL 26 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHH
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHH
Confidence 788999999999999998888774
No 131
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=66.97 E-value=50 Score=25.56 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=46.4
Q ss_pred CCccCCCCcEEEEEEeCeEEEEEEeccCCC--CeeEeEEecCCcEEEEcCCCeEEEE-eCCCCcEEEEEE
Q 048538 70 PPHTHPRATDILAVLEGTLYVGFVTSNELN--NTLIAKVLKKGDVFVFPIGLIHFQF-NIGKTNAVAIAA 136 (181)
Q Consensus 70 ~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~--~~~~~~~l~~GD~i~ip~g~~H~~~-N~g~~~~~~l~v 136 (181)
.+-.|+.+.|.++-+.|+-.+.++...+++ ++...+...+|+.+.+.+|++|..- .. +.+..++++
T Consensus 72 ~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l-~~~~dF~vv 140 (162)
T PRK03606 72 MLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLAL-GEVSDFLVV 140 (162)
T ss_pred eEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCccccccccc-CCCceEEEE
Confidence 445688789999999998777776543111 2245688999999999999999653 44 344566433
No 132
>PLN02288 mannose-6-phosphate isomerase
Probab=66.42 E-value=4.8 Score=35.59 Aligned_cols=21 Identities=14% Similarity=0.121 Sum_probs=18.8
Q ss_pred eEEecCCcEEEEcCCCeEEEE
Q 048538 104 AKVLKKGDVFVFPIGLIHFQF 124 (181)
Q Consensus 104 ~~~l~~GD~i~ip~g~~H~~~ 124 (181)
...|+|||.+++|+|.+|..-
T Consensus 252 ~v~L~PGeaifl~ag~~HAYl 272 (394)
T PLN02288 252 YVKLNPGEALYLGANEPHAYL 272 (394)
T ss_pred eEecCCCCEEEecCCCCceec
Confidence 488999999999999999853
No 133
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=66.36 E-value=35 Score=26.91 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=33.6
Q ss_pred EEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEc
Q 048538 61 IDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFP 116 (181)
Q Consensus 61 v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip 116 (181)
..+++|...-.---. ...+++|++|.+.+...+.+ |++.....+.+||++-..
T Consensus 40 ~~~~kge~l~~~Gd~-~~~ly~v~~G~v~~~~~~~~--G~e~i~~~~~~gd~~g~~ 92 (235)
T PRK11161 40 KPIQKGQTLFKAGDE-LKSLYAIRSGTIKSYTITEQ--GDEQITGFHLAGDLVGFD 92 (235)
T ss_pred eeecCCCEeECCCCC-cceEEEEeeceEEEEEECCC--CCEEEEEeccCCceeccc
Confidence 346676654333233 56789999999998876543 243334456899998543
No 134
>smart00153 VHP Villin headpiece domain.
Probab=61.73 E-value=10 Score=21.88 Aligned_cols=22 Identities=9% Similarity=0.197 Sum_probs=19.0
Q ss_pred CCHHHHHHHcCCCHHHHHHHHh
Q 048538 158 INPDFLAKAFQLDVDVVKDLEA 179 (181)
Q Consensus 158 ~~~e~l~~~~~v~~~~~~~~~~ 179 (181)
++++.....||+++++..++++
T Consensus 2 LsdeeF~~vfgmsr~eF~~LP~ 23 (36)
T smart00153 2 LSDEDFEEVFGMTREEFYKLPL 23 (36)
T ss_pred CCHHHHHHHHCCCHHHHHhCcH
Confidence 5788899999999999988763
No 135
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=59.54 E-value=37 Score=25.61 Aligned_cols=57 Identities=16% Similarity=0.064 Sum_probs=37.4
Q ss_pred EEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcC
Q 048538 58 AVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPI 117 (181)
Q Consensus 58 ~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~ 117 (181)
.....+++|...-..--+ ..-+++|++|.+.+.....+ |+......+.+||++-..+
T Consensus 23 ~~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~--G~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 23 LEVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTED--GREIILGFLGPGDFFGELA 79 (214)
T ss_pred ceeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCC--CcEEEEEEecCCchhhhHH
Confidence 344557777554433344 55688999999999876543 2333345588999997775
No 136
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=58.81 E-value=11 Score=21.82 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=16.6
Q ss_pred CCHHHHHHHcCCCHHHHHHHHh
Q 048538 158 INPDFLAKAFQLDVDVVKDLEA 179 (181)
Q Consensus 158 ~~~e~l~~~~~v~~~~~~~~~~ 179 (181)
++++...++||+++++..+++.
T Consensus 2 Lsd~dF~~vFgm~~~eF~~lP~ 23 (36)
T PF02209_consen 2 LSDEDFEKVFGMSREEFYKLPK 23 (36)
T ss_dssp S-HHHHHHHHSS-HHHHHHS-H
T ss_pred cCHHHHHHHHCCCHHHHHHChH
Confidence 5788889999999999988763
No 137
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=56.95 E-value=15 Score=27.76 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHHHhc
Q 048538 155 NPPINPDFLAKAFQLDVDVVKDLEAK 180 (181)
Q Consensus 155 ~~~~~~e~l~~~~~v~~~~~~~~~~~ 180 (181)
.|+.+++.+|++|+++.+.+.+++++
T Consensus 87 ~~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 87 AYQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCCChHHHHHHcCCCHHHHHHHhcC
Confidence 46799999999999999999998764
No 138
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=55.97 E-value=4.2 Score=39.11 Aligned_cols=56 Identities=20% Similarity=0.076 Sum_probs=36.1
Q ss_pred cCCCcCCCccCCCCcEEEEEEeCe-----EEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCC
Q 048538 64 APYGQNPPHTHPRATDILAVLEGT-----LYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIG 127 (181)
Q Consensus 64 ~pg~~~~~H~H~~~~E~~yVl~G~-----~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g 127 (181)
+-|...++-+||-.++-+|.-++- -+++|. .-++.-..||.|+||+|.||+++|.-
T Consensus 763 E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe--------~WtfvQ~LGdAVfIPAGaPHQVrNLk 823 (889)
T KOG1356|consen 763 EQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVE--------PWTFVQFLGDAVFIPAGAPHQVRNLK 823 (889)
T ss_pred HhcCCCCcccCCCcccceeccHHHHHHHHHHhCCC--------ccchhhcccceEEecCCCcHHhhhhh
Confidence 334445555577666767776552 122221 12456678999999999999999963
No 139
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=54.92 E-value=16 Score=21.66 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=18.2
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhcC
Q 048538 158 INPDFLAKAFQLDVDVVKDLEAKF 181 (181)
Q Consensus 158 ~~~e~l~~~~~v~~~~~~~~~~~~ 181 (181)
.+...+++.+|+++..+.+..++|
T Consensus 18 ~s~~~ia~~lgvs~~Tv~~w~kr~ 41 (50)
T PF13384_consen 18 WSIREIAKRLGVSRSTVYRWIKRY 41 (50)
T ss_dssp --HHHHHHHHTS-HHHHHHHHT--
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHc
Confidence 889999999999999999998876
No 140
>PF13999 MarB: MarB protein
Probab=52.34 E-value=5.8 Score=26.12 Aligned_cols=22 Identities=32% Similarity=0.262 Sum_probs=14.2
Q ss_pred ChhhHHHhhhhhccCCCCCCCeee
Q 048538 1 CALLILASSLASAFDPSPLQDICV 24 (181)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (181)
|+||+|+|++++| ++..+..++
T Consensus 5 ~~LL~L~SGqs~A--EQTt~p~~~ 26 (66)
T PF13999_consen 5 LALLLLFSGQSFA--EQTTQPVVQ 26 (66)
T ss_pred HHHHHHHhhhhhh--hccCCcccc
Confidence 4688888888877 344444444
No 141
>PF13994 PgaD: PgaD-like protein
Probab=47.85 E-value=26 Score=26.11 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.5
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhc
Q 048538 157 PINPDFLAKAFQLDVDVVKDLEAK 180 (181)
Q Consensus 157 ~~~~e~l~~~~~v~~~~~~~~~~~ 180 (181)
+.+++.+|++|++++++++++++.
T Consensus 100 ~~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 100 PVSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCCHHHHHHHcCCCHHHHHHHHhC
Confidence 389999999999999999998763
No 142
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=47.77 E-value=1.2e+02 Score=22.89 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=39.3
Q ss_pred CCccCCCCcEEEEEEeCeEEEEEEeccC---------C------CCeeEeEEecCCcEEEEcCCCeEEEE
Q 048538 70 PPHTHPRATDILAVLEGTLYVGFVTSNE---------L------NNTLIAKVLKKGDVFVFPIGLIHFQF 124 (181)
Q Consensus 70 ~~H~H~~~~E~~yVl~G~~~~~v~~~~~---------~------~~~~~~~~l~~GD~i~ip~g~~H~~~ 124 (181)
.+-.|..-..+=|+|+|+=.+.+..... + .+......|++|+.+++-++.+|...
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 3445665678889999998777754321 0 01223678999999999999999976
No 143
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=47.65 E-value=25 Score=27.06 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHHHhc
Q 048538 155 NPPINPDFLAKAFQLDVDVVKDLEAK 180 (181)
Q Consensus 155 ~~~~~~e~l~~~~~v~~~~~~~~~~~ 180 (181)
.|+.+++.+|.+|+++.+.++.+++.
T Consensus 96 ~~~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 96 RPDLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCCCChHHHHHHcCCCHHHHHHHHhC
Confidence 45799999999999999999998763
No 144
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=47.64 E-value=49 Score=25.01 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=21.9
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhcC
Q 048538 157 PINPDFLAKAFQLDVDVVKDLEAKF 181 (181)
Q Consensus 157 ~~~~e~l~~~~~v~~~~~~~~~~~~ 181 (181)
+++.+.+|..+|++++.+-++.+++
T Consensus 143 ~~t~~~iA~~lG~tretvsR~l~~l 167 (193)
T TIGR03697 143 RLSHQAIAEAIGSTRVTITRLLGDL 167 (193)
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHH
Confidence 5899999999999999998887764
No 145
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=46.87 E-value=62 Score=26.41 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=21.4
Q ss_pred EeEEecCCcEEEEcCCCeEEEEeCC
Q 048538 103 IAKVLKKGDVFVFPIGLIHFQFNIG 127 (181)
Q Consensus 103 ~~~~l~~GD~i~ip~g~~H~~~N~g 127 (181)
..+.+++|+.+++|+..+|......
T Consensus 141 ~~Vkp~aG~~vlfps~~lH~v~pVt 165 (226)
T PRK05467 141 HRVKLPAGDLVLYPSTSLHRVTPVT 165 (226)
T ss_pred EEEecCCCeEEEECCCCceeeeecc
Confidence 4678999999999999999987643
No 146
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=46.58 E-value=44 Score=32.18 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=33.2
Q ss_pred EEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEE
Q 048538 59 VRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVF 113 (181)
Q Consensus 59 ~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i 113 (181)
....++||...-.--.. ..++++|++|++.+.....+ ++.....+++||++
T Consensus 398 ~~~~~~pge~I~~qge~-~~~lY~I~~G~V~i~~~~~~---~e~~l~~l~~Gd~F 448 (823)
T PLN03192 398 KAEYIPPREDVIMQNEA-PDDVYIVVSGEVEIIDSEGE---KERVVGTLGCGDIF 448 (823)
T ss_pred heeeeCCCCEEEECCCC-CceEEEEEecEEEEEEecCC---cceeeEEccCCCEe
Confidence 34557787765433334 67899999999998643221 22234569999987
No 147
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=45.40 E-value=1.3e+02 Score=22.55 Aligned_cols=57 Identities=26% Similarity=0.213 Sum_probs=33.3
Q ss_pred cCCCccCCCCcEEEEEEeCeEEEEEEeccC------------------CCCeeEeEEecCCcEEEEcCCCeEEEE
Q 048538 68 QNPPHTHPRATDILAVLEGTLYVGFVTSNE------------------LNNTLIAKVLKKGDVFVFPIGLIHFQF 124 (181)
Q Consensus 68 ~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~------------------~~~~~~~~~l~~GD~i~ip~g~~H~~~ 124 (181)
...+=.|..-..+=|+++|+=.+.+..... .+.......|++|+++++-++.+|...
T Consensus 60 ~~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~iffP~d~H~p~ 134 (153)
T PF04074_consen 60 ERRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAIFFPEDAHRPG 134 (153)
T ss_dssp GS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEEE-TT--EEEE
T ss_pred ccceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEEECCCcccccc
Confidence 345556776778999999987777732110 022223567999999999999999964
No 148
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=45.36 E-value=1.3e+02 Score=22.42 Aligned_cols=55 Identities=25% Similarity=0.189 Sum_probs=34.0
Q ss_pred CCCccCCCCcEEEEEEeCeEEEEEEeccC------------------CCCeeEeEEecCCcEEEEcCCCeEEE
Q 048538 69 NPPHTHPRATDILAVLEGTLYVGFVTSNE------------------LNNTLIAKVLKKGDVFVFPIGLIHFQ 123 (181)
Q Consensus 69 ~~~H~H~~~~E~~yVl~G~~~~~v~~~~~------------------~~~~~~~~~l~~GD~i~ip~g~~H~~ 123 (181)
..+=.|..-..+=|+|+|+=.+.+..... .+.......|++|+.+++-++-+|..
T Consensus 61 ~~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~~y~~~~D~~f~~~~~~~~~i~l~~G~faiffP~D~H~P 133 (142)
T TIGR00022 61 KKAELHHRYLDIQLLLRGEENIEVGTTPPNLSVYEDYLEEDDIQLCADIDDEQTVILKPGMFAVFYPGEPHKP 133 (142)
T ss_pred cchhhhhheEEEEEeecceEEEEEecCccccccccCCCcCCCEEeccCCCCceEEEeCCCcEEEECCCCcccc
Confidence 34455665678889999997777742210 01122345577777777777777764
No 149
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=45.15 E-value=16 Score=31.97 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=17.0
Q ss_pred eEEecCCcEEEEcCCCeEEEEe
Q 048538 104 AKVLKKGDVFVFPIGLIHFQFN 125 (181)
Q Consensus 104 ~~~l~~GD~i~ip~g~~H~~~N 125 (181)
...|+||+.+++|+|.+|....
T Consensus 251 ~v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 251 YVELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEEE-TT-EEEEHTTHHEEEEE
T ss_pred EEEecCCceEEecCCCcccccc
Confidence 3689999999999999998643
No 150
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=44.49 E-value=23 Score=26.00 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=18.8
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhc
Q 048538 158 INPDFLAKAFQLDVDVVKDLEAK 180 (181)
Q Consensus 158 ~~~e~l~~~~~v~~~~~~~~~~~ 180 (181)
|++..+++.+|++.+++++++++
T Consensus 73 FsD~~IA~l~~~~e~~vr~~R~~ 95 (123)
T PF02787_consen 73 FSDRQIARLWGVSEEEVRELRKE 95 (123)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHH
T ss_pred CCHHHHHhccCCCHHHHHHHHHH
Confidence 99999999999999999998875
No 151
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.39 E-value=11 Score=30.67 Aligned_cols=39 Identities=28% Similarity=0.232 Sum_probs=31.3
Q ss_pred CceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEE
Q 048538 54 LGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGF 92 (181)
Q Consensus 54 ~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v 92 (181)
-++++.++-++|++..|+|-|++=.-+.-+|-|++.+.-
T Consensus 73 D~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVks 111 (236)
T KOG4281|consen 73 DRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKS 111 (236)
T ss_pred CceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeee
Confidence 367888899999999999999944455668899988753
No 152
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=42.92 E-value=35 Score=26.73 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=0.0
Q ss_pred EEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 048538 80 ILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAA 136 (181)
Q Consensus 80 ~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v 136 (181)
++|+++|++.+....+ .+.|.+||.+.+.. .+...-.++..+.++.+
T Consensus 138 l~~~~~G~~~i~~~~~--------~~~L~~~d~l~~~~--~~~~~l~~~g~ll~v~i 184 (184)
T PF05962_consen 138 LVYVLEGAWSITEGGN--------CISLSAGDLLLIDD--EEDLPLTGDGQLLWVSI 184 (184)
T ss_dssp EEEESSS-EEECCCEE--------EEEE-TT-EEEEES--EECEEEEEECCEEEEE-
T ss_pred EEEEeeCcEEEecCCC--------ceEcCCCCEEEEeC--CCceEecCCeeEEEEeC
No 153
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=42.83 E-value=49 Score=24.84 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=20.6
Q ss_pred EeEEecCCcEEEEcCCCeEEE-EeCCCCc
Q 048538 103 IAKVLKKGDVFVFPIGLIHFQ-FNIGKTN 130 (181)
Q Consensus 103 ~~~~l~~GD~i~ip~g~~H~~-~N~g~~~ 130 (181)
....+++||++++...++|.- .|.++..
T Consensus 180 ~~~~~~~Gdvl~~~~~~~H~s~~N~s~~~ 208 (211)
T PF05721_consen 180 VPVPMKAGDVLFFHSRLIHGSGPNTSDDP 208 (211)
T ss_dssp EEE-BSTTEEEEEETTSEEEEE-B-SSST
T ss_pred EEeecCCCeEEEEcCCccccCCCCCCcCc
Confidence 456799999999999999976 5666543
No 154
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=39.99 E-value=22 Score=25.85 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=25.4
Q ss_pred CcEE-EEEEeCe---EEEEEEeccCCCCeeEeEEecCCcEEEEcCCC
Q 048538 77 ATDI-LAVLEGT---LYVGFVTSNELNNTLIAKVLKKGDVFVFPIGL 119 (181)
Q Consensus 77 ~~E~-~yVl~G~---~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~ 119 (181)
+.-| .|++.|+ +.+.+++. ..+..++||.++|-+-.
T Consensus 51 G~Rf~TYvI~g~~gSg~I~lNGA-------AAr~~~~GD~vII~sy~ 90 (111)
T cd06919 51 GARFETYVIPGERGSGVICLNGA-------AARLGQPGDRVIIMAYA 90 (111)
T ss_pred CcEEEEEEEEcCCCCCEEEeCCH-------HHhcCCCCCEEEEEECc
Confidence 4443 6899887 77777533 25889999999886543
No 155
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=39.59 E-value=48 Score=31.80 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=34.0
Q ss_pred EEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEE
Q 048538 62 DYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVF 113 (181)
Q Consensus 62 ~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i 113 (181)
.+.||......-.+ -.++++|++|.++..-.+.+ .......|++||++
T Consensus 446 ~f~pge~iireGd~-v~~myFI~rG~le~~~~~~g---~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 446 YFTPGEYIIREGDP-VTDMYFIVRGSLESITTDGG---GFFVVAILGPGDFF 493 (727)
T ss_pred ccCCCCeEEecCCc-cceeEEEEeeeEEEEEccCC---ceEEEEEecCCCcc
Confidence 35677766666666 78999999999987644321 22345779999998
No 156
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=39.56 E-value=1.7e+02 Score=22.93 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=44.2
Q ss_pred CCccCCCCcEEEEEEeC-eEEEEEEeccCC--CCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEE
Q 048538 70 PPHTHPRATDILAVLEG-TLYVGFVTSNEL--NNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAA 136 (181)
Q Consensus 70 ~~H~H~~~~E~~yVl~G-~~~~~v~~~~~~--~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v 136 (181)
..-.|+.+.+.+.-+.| ...+.+....+. -+....+...+|+.+.+-+|++|..--.=+.+..++++
T Consensus 72 ~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vv 141 (171)
T PRK13395 72 MMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVV 141 (171)
T ss_pred eEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEE
Confidence 44467777888888999 544444433210 02245688999999999999999864332344566654
No 157
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=38.92 E-value=25 Score=22.59 Aligned_cols=24 Identities=8% Similarity=0.257 Sum_probs=21.5
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhcC
Q 048538 158 INPDFLAKAFQLDVDVVKDLEAKF 181 (181)
Q Consensus 158 ~~~e~l~~~~~v~~~~~~~~~~~~ 181 (181)
++.+.+|...|++++.+.++.++|
T Consensus 29 lt~~~iA~~~g~sr~tv~r~l~~l 52 (76)
T PF13545_consen 29 LTQEEIADMLGVSRETVSRILKRL 52 (76)
T ss_dssp SSHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999999999998887653
No 158
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=38.27 E-value=1.8e+02 Score=22.30 Aligned_cols=65 Identities=15% Similarity=0.039 Sum_probs=43.8
Q ss_pred cCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCC-----------------CCeeEeEEecCCcEEEEcCCCeEEEEeC
Q 048538 64 APYGQNPPHTHPRATDILAVLEGTLYVGFVTSNEL-----------------NNTLIAKVLKKGDVFVFPIGLIHFQFNI 126 (181)
Q Consensus 64 ~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~-----------------~~~~~~~~l~~GD~i~ip~g~~H~~~N~ 126 (181)
++....-+-.|..=.++=++++|+=.+.+....+. ........|.||+.+++=+|.+|.....
T Consensus 56 ~~~~~~~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c~ 135 (154)
T COG2731 56 QEAEEKKFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGCN 135 (154)
T ss_pred cchhhcchhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCccccccc
Confidence 44444455566656788899999866665433210 1123467899999999999999987554
Q ss_pred CC
Q 048538 127 GK 128 (181)
Q Consensus 127 g~ 128 (181)
.+
T Consensus 136 ~~ 137 (154)
T COG2731 136 VG 137 (154)
T ss_pred cC
Confidence 44
No 159
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=36.11 E-value=27 Score=26.01 Aligned_cols=36 Identities=11% Similarity=0.214 Sum_probs=25.7
Q ss_pred CcEE-EEEEeCe---EEEEEEeccCCCCeeEeEEecCCcEEEEcCCC
Q 048538 77 ATDI-LAVLEGT---LYVGFVTSNELNNTLIAKVLKKGDVFVFPIGL 119 (181)
Q Consensus 77 ~~E~-~yVl~G~---~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~ 119 (181)
+.-| .|++.|+ +.+.+++. ..+..++||.++|-+-.
T Consensus 52 G~Rf~TYvI~G~~GSg~I~lNGA-------AArl~~~GD~VII~sy~ 91 (126)
T TIGR00223 52 GKRFSTYAIAGKRGSRIICVNGA-------AARCVSVGDIVIIASYV 91 (126)
T ss_pred CcEEEEEEEEcCCCCCEEEeCCH-------HHhcCCCCCEEEEEECC
Confidence 3433 6899886 77777533 25889999999887643
No 160
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=33.85 E-value=57 Score=19.17 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=18.3
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhc
Q 048538 158 INPDFLAKAFQLDVDVVKDLEAK 180 (181)
Q Consensus 158 ~~~e~l~~~~~v~~~~~~~~~~~ 180 (181)
++...+++.||+++..+-+++++
T Consensus 22 ~si~~IA~~~gvsr~TvyR~l~~ 44 (45)
T PF02796_consen 22 MSIAEIAKQFGVSRSTVYRYLNK 44 (45)
T ss_dssp --HHHHHHHTTS-HHHHHHHHCC
T ss_pred CCHHHHHHHHCcCHHHHHHHHhc
Confidence 89999999999999999998765
No 161
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=32.61 E-value=25 Score=33.13 Aligned_cols=80 Identities=26% Similarity=0.286 Sum_probs=44.4
Q ss_pred CCCeeeecCCCCC-CccCCCeEEEEeecCCCCCCccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccC
Q 048538 19 LQDICVAIDEPKN-AANRLGFSVKIANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNE 97 (181)
Q Consensus 19 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~ 97 (181)
..|+|+ +|+- +-|+... .+-+...-+..+ .+.+....-.||... -|.-..-+.+++|++|.+++.- ++
T Consensus 538 kADICV---HLNRKVFnEHpa-FRLASDGCLRaL---Am~f~~~H~APGDLl-YHtGESvDaLcFvVsGSLEVIQ-DD-- 606 (971)
T KOG0501|consen 538 KADICV---HLNRKVFNEHPA-FRLASDGCLRAL---AMEFQTNHCAPGDLL-YHTGESVDALCFVVSGSLEVIQ-DD-- 606 (971)
T ss_pred ccceee---ecchhhhccCcc-eeeccchhHHHH---HHHHHhccCCCccee-eecCCccceEEEEEecceEEee-cC--
Confidence 356676 4543 4455444 333333323332 333444556676543 2333324577999999999843 22
Q ss_pred CCCeeEeEEecCCcEE
Q 048538 98 LNNTLIAKVLKKGDVF 113 (181)
Q Consensus 98 ~~~~~~~~~l~~GD~i 113 (181)
.....|.+||++
T Consensus 607 ----EVVAILGKGDVF 618 (971)
T KOG0501|consen 607 ----EVVAILGKGDVF 618 (971)
T ss_pred ----cEEEEeecCccc
Confidence 236789999998
No 162
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=32.33 E-value=34 Score=25.48 Aligned_cols=36 Identities=14% Similarity=0.240 Sum_probs=25.5
Q ss_pred CcEE-EEEEeCe---EEEEEEeccCCCCeeEeEEecCCcEEEEcCCC
Q 048538 77 ATDI-LAVLEGT---LYVGFVTSNELNNTLIAKVLKKGDVFVFPIGL 119 (181)
Q Consensus 77 ~~E~-~yVl~G~---~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~ 119 (181)
+.-| .|++.|+ +.+.+++. ..+..++||.++|-+-.
T Consensus 52 G~Rf~TYvI~g~~GSg~I~lNGA-------AAr~~~~GD~vII~ay~ 91 (126)
T PRK05449 52 GARFETYVIAGERGSGVICLNGA-------AARLVQVGDLVIIAAYA 91 (126)
T ss_pred CcEEEEEEEEcCCCCCEEEeCCH-------HHhcCCCCCEEEEEECc
Confidence 3433 6899886 77777533 25889999999887643
No 163
>PRK11396 hypothetical protein; Provisional
Probab=31.99 E-value=2.6e+02 Score=22.25 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=51.8
Q ss_pred CccCCCeEEEEeecCCCCCCccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCe-EEEEEEeccCCCCeeEeEEecCC
Q 048538 32 AANRLGFSVKIANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGT-LYVGFVTSNELNNTLIAKVLKKG 110 (181)
Q Consensus 32 ~~~~~g~~~~~~~~~~~p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~-~~~~v~~~~~~~~~~~~~~l~~G 110 (181)
+|+--||..+++....- +..+....+.+-++...+ +.-..++-+.++.+|+|. +.+... + ...+.++++
T Consensus 13 ~WkNGgG~TrEI~~~P~-~~~dF~WRiSiA~I~~~G--pFS~FpGidR~i~lL~G~g~~L~~~-~------~~~~~l~~~ 82 (191)
T PRK11396 13 LWRNAAGETREICTFPP-AKRDFYWRASIASIAANG--EFSLFPGMERIVTLLEGGEMFLESA-D------RFNHTLKPL 82 (191)
T ss_pred cccCCCeEEEEEEEcCC-CCCCceEEEEEEEecCCC--CCCCCCCccEEEEEEECCCEEEeeC-C------ccceecCCC
Confidence 67666666666643211 112223344444444433 233456678899999995 555532 1 124678899
Q ss_pred cEEEEcCCCeEEEEeCC
Q 048538 111 DVFVFPIGLIHFQFNIG 127 (181)
Q Consensus 111 D~i~ip~g~~H~~~N~g 127 (181)
+-+.|+.+..-..+..+
T Consensus 83 ~p~~F~Gd~~v~a~L~~ 99 (191)
T PRK11396 83 QPFAFAADQVVKAKLTA 99 (191)
T ss_pred CCeEeCCCCeeEEEECC
Confidence 99999999887777654
No 164
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=31.91 E-value=53 Score=21.23 Aligned_cols=24 Identities=21% Similarity=0.055 Sum_probs=21.3
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhc
Q 048538 157 PINPDFLAKAFQLDVDVVKDLEAK 180 (181)
Q Consensus 157 ~~~~e~l~~~~~v~~~~~~~~~~~ 180 (181)
.++...|++.+|+++..+.++.++
T Consensus 22 ~~ta~eLa~~lgl~~~~v~r~L~~ 45 (68)
T smart00550 22 TSTALQLAKNLGLPKKEVNRVLYS 45 (68)
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHH
Confidence 399999999999999999988664
No 165
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=31.17 E-value=35 Score=21.79 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=16.3
Q ss_pred CHHHHHHHcCCCHHHHHHHHhcC
Q 048538 159 NPDFLAKAFQLDVDVVKDLEAKF 181 (181)
Q Consensus 159 ~~e~l~~~~~v~~~~~~~~~~~~ 181 (181)
-..-|...+|++.+++++|+.++
T Consensus 45 ~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 45 VENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp HHHHHHHT-T--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHc
Confidence 46677788999999999998864
No 166
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=30.66 E-value=1.1e+02 Score=24.01 Aligned_cols=44 Identities=14% Similarity=0.026 Sum_probs=33.2
Q ss_pred EEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeC
Q 048538 79 DILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNI 126 (181)
Q Consensus 79 E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~ 126 (181)
-+..-++|++.+.+... ....+..|.+|+-++++++..=.+...
T Consensus 131 ~~~~~l~G~G~v~l~~~----G~i~~i~L~~ge~~~Vd~~~lVA~~~~ 174 (215)
T PF01987_consen 131 LFMLKLSGRGTVFLSGY----GAIYEIDLAPGEEIIVDPGHLVAWSGS 174 (215)
T ss_dssp EEEEEEESSCEEEEEEC----CSEEEEEEE-EEEEEEEGGGEEEEETT
T ss_pred cEEEEEEEEEEEEEEeC----CcEEEEEccCCceEEEcCCCEEEECCC
Confidence 44567899999988765 345678899999999999888777653
No 167
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=30.56 E-value=3.6e+02 Score=23.36 Aligned_cols=61 Identities=10% Similarity=0.153 Sum_probs=45.6
Q ss_pred CCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCCCcEEEEEEEc
Q 048538 70 PPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGKTNAVAIAALS 138 (181)
Q Consensus 70 ~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~~~~~~l~v~~ 138 (181)
...+...++=++.-.+|.+.++..- + +..+.|++..+||+|.-..+--.+...-.++.++.
T Consensus 148 safyNsDGDFLiVPQ~G~L~I~TEf-----G---rllV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg 208 (446)
T KOG1417|consen 148 SAFYNSDGDFLIVPQQGRLWITTEF-----G---RLLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYG 208 (446)
T ss_pred ceeecCCCCEEEecccCcEEEEeec-----c---ceeecccceEEeecccEEEEecCCCCcceEEEEec
Confidence 3445554666677778877776432 1 58899999999999999888777777777888876
No 168
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=27.50 E-value=57 Score=27.04 Aligned_cols=34 Identities=18% Similarity=0.072 Sum_probs=24.5
Q ss_pred EEecCCcEEEEcCCCeEEE-EeCCCCcE-EEEEEEc
Q 048538 105 KVLKKGDVFVFPIGLIHFQ-FNIGKTNA-VAIAALS 138 (181)
Q Consensus 105 ~~l~~GD~i~ip~g~~H~~-~N~g~~~~-~~l~v~~ 138 (181)
..+++||++++...++|.- .|.++.+= .++..|.
T Consensus 213 ~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~ 248 (277)
T TIGR02408 213 FTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFN 248 (277)
T ss_pred eccCCceEEEEccccccCCCCCCCCCcceeEEEEEe
Confidence 5689999999999999975 57766543 3333444
No 169
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=27.14 E-value=3.6e+02 Score=23.55 Aligned_cols=82 Identities=17% Similarity=0.129 Sum_probs=49.7
Q ss_pred CCCeEEEEeecCCCCCCccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEE
Q 048538 35 RLGFSVKIANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFV 114 (181)
Q Consensus 35 ~~g~~~~~~~~~~~p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ 114 (181)
+.|.++..++..+--. ...+.++.++.-.+...+-..++..+-.+|+..-++.+..++ |...-...|++||-+.
T Consensus 250 ~sG~eVlvVd~~G~tR----~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~d--G~~vsVt~Lk~GD~VL 323 (344)
T PRK02290 250 RSGDEVLVVDADGNTR----EAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPD--GKPVSVVDLKPGDEVL 323 (344)
T ss_pred cCCCEEEEEeCCCCEE----EEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCC--CCEeeeeecCCCCEEE
Confidence 3455555555544322 456777777766554444333478888999998888887664 1222346699999775
Q ss_pred E--cCCCeEE
Q 048538 115 F--PIGLIHF 122 (181)
Q Consensus 115 i--p~g~~H~ 122 (181)
+ +.+--|.
T Consensus 324 ~~~~~~~RHf 333 (344)
T PRK02290 324 GYLEEAARHF 333 (344)
T ss_pred EEecCCcccc
Confidence 4 3344444
No 170
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=26.53 E-value=1e+02 Score=17.28 Aligned_cols=21 Identities=5% Similarity=0.028 Sum_probs=16.7
Q ss_pred CHHHHHHHcCCCHHHHHHHHh
Q 048538 159 NPDFLAKAFQLDVDVVKDLEA 179 (181)
Q Consensus 159 ~~e~l~~~~~v~~~~~~~~~~ 179 (181)
+.+.+++.+++++..+.+..+
T Consensus 2 s~~e~a~~lgvs~~tl~~~~~ 22 (49)
T cd04762 2 TTKEAAELLGVSPSTLRRWVK 22 (49)
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 456788899999999887754
No 171
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=26.46 E-value=2.6e+02 Score=21.48 Aligned_cols=47 Identities=9% Similarity=-0.002 Sum_probs=30.8
Q ss_pred EEEEEcCCCcCCCc-cCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEE
Q 048538 59 VRIDYAPYGQNPPH-THPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVF 113 (181)
Q Consensus 59 ~~v~l~pg~~~~~H-~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i 113 (181)
...++++|..-..- .-+ .+.+..+|+|++.+..++ ..-+.+.|-+.+
T Consensus 29 ~i~~L~~~~~YAvE~~T~-~drLSlLLsGr~~Vs~~g-------~fLH~I~p~qFl 76 (153)
T PF04831_consen 29 EIRTLKKGETYAVEGKTP-IDRLSLLLSGRMRVSCDG-------RFLHYIYPYQFL 76 (153)
T ss_pred eEEEecCCceeeecCCcc-cceEeEEEcCcEEEEECC-------EeeEeecccccc
Confidence 44667777643322 233 578899999999997642 235667777666
No 172
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=25.55 E-value=49 Score=25.19 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=13.6
Q ss_pred eEEecCCcEEEEcCCC
Q 048538 104 AKVLKKGDVFVFPIGL 119 (181)
Q Consensus 104 ~~~l~~GD~i~ip~g~ 119 (181)
...|++||.+++|...
T Consensus 149 n~~L~~gD~I~Vp~~~ 164 (165)
T TIGR03027 149 NVELKPGDVLIIPESW 164 (165)
T ss_pred CceeCCCCEEEEeccc
Confidence 4779999999999753
No 173
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=25.16 E-value=74 Score=19.08 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHcCCCHHHHHHHH
Q 048538 156 PPINPDFLAKAFQLDVDVVKDLE 178 (181)
Q Consensus 156 ~~~~~e~l~~~~~v~~~~~~~~~ 178 (181)
++++.+.||..|+||+..+.+-.
T Consensus 14 ~~it~~eLa~~l~vS~rTi~~~i 36 (55)
T PF08279_consen 14 EPITAKELAEELGVSRRTIRRDI 36 (55)
T ss_dssp TSBEHHHHHHHCTS-HHHHHHHH
T ss_pred CCcCHHHHHHHhCCCHHHHHHHH
Confidence 35899999999999999876643
No 174
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=24.78 E-value=3.1e+02 Score=20.71 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=29.4
Q ss_pred EEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEE-eCCCCcEEEEEEEcCCCCce
Q 048538 82 AVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQF-NIGKTNAVAIAALSSQNPGV 144 (181)
Q Consensus 82 yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~-N~g~~~~~~l~v~~~~~~g~ 144 (181)
+-.+|++++.+. + ...+.|.|..-++..+..-.+ +.+ ++..-+.++-.++.|.
T Consensus 72 FQ~dGkG~L~~~-~--------g~~~~pND~Y~L~~~~FRLYYTS~s-~~~q~idv~veDnfGq 125 (137)
T PF12988_consen 72 FQPDGKGTLRMD-D--------GTVLLPNDRYPLEKEVFRLYYTSRS-DDQQTIDVYVEDNFGQ 125 (137)
T ss_dssp E-SSS-EEEEET-T--------S-EE-TTSEEE-S-SEEEEEEEE-S-SS-EEEEEEEEETTTE
T ss_pred EeecCCEEEEec-C--------CcEeccccceecCcCEEEEEEecCC-CCCceeEEEEEeCCCC
Confidence 356899999874 2 278999999999988766443 444 4444455555555554
No 175
>PRK10106 hypothetical protein; Provisional
Probab=24.76 E-value=32 Score=22.49 Aligned_cols=22 Identities=32% Similarity=0.298 Sum_probs=15.9
Q ss_pred hhhHHHhhhhhccCCCCCCCeeee
Q 048538 2 ALLILASSLASAFDPSPLQDICVA 25 (181)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (181)
+||+|+|+++.| +++.+..|+.
T Consensus 3 aLL~l~Sgq~~A--EQt~~p~~qn 24 (65)
T PRK10106 3 ALLLLFSGQGVA--EQTTQPVVQN 24 (65)
T ss_pred hhHhhhhchhhh--cCcCCccccC
Confidence 678888888877 5666666664
No 176
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=24.11 E-value=1.2e+02 Score=17.45 Aligned_cols=23 Identities=17% Similarity=0.034 Sum_probs=17.9
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhc
Q 048538 158 INPDFLAKAFQLDVDVVKDLEAK 180 (181)
Q Consensus 158 ~~~e~l~~~~~v~~~~~~~~~~~ 180 (181)
++...+++.+|++...++...++
T Consensus 1 ~~~~e~a~~~gv~~~tlr~~~~~ 23 (49)
T cd04761 1 YTIGELAKLTGVSPSTLRYYERI 23 (49)
T ss_pred CcHHHHHHHHCcCHHHHHHHHHC
Confidence 35567889999999999877543
No 177
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=24.07 E-value=1.6e+02 Score=23.73 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=24.6
Q ss_pred eEEecCCcEEEEcCCCeEEEEeC--CCCcEEEEEE
Q 048538 104 AKVLKKGDVFVFPIGLIHFQFNI--GKTNAVAIAA 136 (181)
Q Consensus 104 ~~~l~~GD~i~ip~g~~H~~~N~--g~~~~~~l~v 136 (181)
...+.+||.|.+|+-..|..... |..-+.++++
T Consensus 145 ~VklPAGdLVlypStSlH~VtPVTRg~R~asffW~ 179 (229)
T COG3128 145 RVKLPAGDLVLYPSTSLHEVTPVTRGERFASFFWI 179 (229)
T ss_pred EEeccCCCEEEcccccceeccccccCceEEEeeeh
Confidence 57899999999999999987543 3344445544
No 178
>COG1476 Predicted transcriptional regulators [Transcription]
Probab=23.97 E-value=1.1e+02 Score=20.19 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.3
Q ss_pred CCHHHHHHHcCCCHHHHHHHHh
Q 048538 158 INPDFLAKAFQLDVDVVKDLEA 179 (181)
Q Consensus 158 ~~~e~l~~~~~v~~~~~~~~~~ 179 (181)
++.+.||+..||+++.+-.+.+
T Consensus 15 ltQ~elA~~vgVsRQTi~~iEk 36 (68)
T COG1476 15 LTQEELAKLVGVSRQTIIAIEK 36 (68)
T ss_pred cCHHHHHHHcCcCHHHHHHHHc
Confidence 8999999999999999877653
No 179
>COG3615 TehB Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=23.92 E-value=2.7e+02 Score=19.77 Aligned_cols=47 Identities=17% Similarity=0.105 Sum_probs=30.2
Q ss_pred EEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEEeCCC
Q 048538 81 LAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQFNIGK 128 (181)
Q Consensus 81 ~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~N~g~ 128 (181)
+-|++|.+.+.--+++++......+...+ +.-++|+-..|++..-+|
T Consensus 40 LsVl~G~vk~~~~~ee~~~~~e~~~~~ea-~~~~~~PQ~WHrVea~tD 86 (99)
T COG3615 40 LSVLKGAVKFLGLAEEGETEPEHVFSIEA-QFPVFPPQAWHRVEAMTD 86 (99)
T ss_pred EEEEeceeEEEEEcCCCCccceEEEeecC-CCCccChhHeeeeeeccc
Confidence 67999999986543321101123455666 666789999999986543
No 180
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=22.99 E-value=1.7e+02 Score=21.90 Aligned_cols=65 Identities=14% Similarity=0.228 Sum_probs=42.5
Q ss_pred CCCccCceEEEEEEEcCCCcCCCccCCCCcEEEEEE----eCeEEEEEEeccCCCCeeEeEEecCCcEEEEcCCCeEEEE
Q 048538 49 PGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVL----EGTLYVGFVTSNELNNTLIAKVLKKGDVFVFPIGLIHFQF 124 (181)
Q Consensus 49 p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl----~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip~g~~H~~~ 124 (181)
|+++ .+.+..+.+++|....-- . +.|+...+ +|.+.+.+.++. --.++|||.+.+-.|....++
T Consensus 12 P~~k--N~~v~fIvl~~g~~tkTk--d-g~~v~~~kVaD~TgsI~isvW~e~-------~~~~~PGDIirLt~Gy~Si~q 79 (134)
T KOG3416|consen 12 PGLK--NINVTFIVLEYGRATKTK--D-GHEVRSCKVADETGSINISVWDEE-------GCLIQPGDIIRLTGGYASIFQ 79 (134)
T ss_pred hhhh--cceEEEEEEeeceeeecc--C-CCEEEEEEEecccceEEEEEecCc-------CcccCCccEEEecccchhhhc
Confidence 5665 445666777887544321 2 44555444 566777776432 267999999999999887776
Q ss_pred e
Q 048538 125 N 125 (181)
Q Consensus 125 N 125 (181)
+
T Consensus 80 g 80 (134)
T KOG3416|consen 80 G 80 (134)
T ss_pred C
Confidence 5
No 181
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=22.94 E-value=1.3e+02 Score=17.45 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=19.8
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHHHhc
Q 048538 155 NPPINPDFLAKAFQLDVDVVKDLEAK 180 (181)
Q Consensus 155 ~~~~~~e~l~~~~~v~~~~~~~~~~~ 180 (181)
+|.++...+++.+|++...+.+..++
T Consensus 15 ~~~~t~~ela~~~~is~~tv~~~l~~ 40 (48)
T PF13412_consen 15 NPRITQKELAEKLGISRSTVNRYLKK 40 (48)
T ss_dssp CTTS-HHHHHHHHTS-HHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 46799999999999999998776554
No 182
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=22.82 E-value=1.4e+02 Score=25.03 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=22.7
Q ss_pred EeEEecCCcEEEEcCCCeEEE-EeCCCCc
Q 048538 103 IAKVLKKGDVFVFPIGLIHFQ-FNIGKTN 130 (181)
Q Consensus 103 ~~~~l~~GD~i~ip~g~~H~~-~N~g~~~ 130 (181)
....++|||++++-..++|.- .|.++..
T Consensus 209 v~~~lkaGd~~~f~~~t~HgS~~N~S~~~ 237 (288)
T TIGR01762 209 VPMQMKAGQFIIFWSTLMHASYPNSGESQ 237 (288)
T ss_pred eeeeeCCceEEEECCCceecCCCCCCCCc
Confidence 356799999999999999975 6766543
No 183
>PF13518 HTH_28: Helix-turn-helix domain
Probab=22.74 E-value=1.1e+02 Score=17.84 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=20.8
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhcC
Q 048538 158 INPDFLAKAFQLDVDVVKDLEAKF 181 (181)
Q Consensus 158 ~~~e~l~~~~~v~~~~~~~~~~~~ 181 (181)
.+...+++-||++...+.+..++|
T Consensus 13 ~s~~~~a~~~gis~~tv~~w~~~y 36 (52)
T PF13518_consen 13 ESVREIAREFGISRSTVYRWIKRY 36 (52)
T ss_pred CCHHHHHHHHCCCHhHHHHHHHHH
Confidence 588899999999999998887664
No 184
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=22.34 E-value=1.4e+02 Score=17.56 Aligned_cols=23 Identities=9% Similarity=0.241 Sum_probs=19.5
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhc
Q 048538 158 INPDFLAKAFQLDVDVVKDLEAK 180 (181)
Q Consensus 158 ~~~e~l~~~~~v~~~~~~~~~~~ 180 (181)
.+-+.++..+|++...+.++.++
T Consensus 21 ~t~~eIa~~lg~s~~~V~~~~~~ 43 (50)
T PF04545_consen 21 LTLEEIAERLGISRSTVRRILKR 43 (50)
T ss_dssp -SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHCCcHHHHHHHHHH
Confidence 89999999999999999887653
No 185
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=21.70 E-value=1.4e+02 Score=16.74 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=17.8
Q ss_pred CCHHHHHHHcCCCHHHHHHHHh
Q 048538 158 INPDFLAKAFQLDVDVVKDLEA 179 (181)
Q Consensus 158 ~~~e~l~~~~~v~~~~~~~~~~ 179 (181)
++.+.+++.+|+++..+.++.+
T Consensus 2 lt~~e~a~~lgis~~ti~~~~~ 23 (49)
T TIGR01764 2 LTVEEAAEYLGVSKDTVYRLIH 23 (49)
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 4567788999999999887764
No 186
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=21.46 E-value=99 Score=17.05 Aligned_cols=16 Identities=19% Similarity=0.275 Sum_probs=11.4
Q ss_pred HHHcCCCHHHHHHHHh
Q 048538 164 AKAFQLDVDVVKDLEA 179 (181)
Q Consensus 164 ~~~~~v~~~~~~~~~~ 179 (181)
|+..|+++++++++..
T Consensus 12 A~~~Gls~eeir~FL~ 27 (30)
T PF08671_consen 12 AKESGLSKEEIREFLE 27 (30)
T ss_dssp HHHTT--HHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHH
Confidence 6678999999998864
No 187
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=21.33 E-value=1.2e+02 Score=18.54 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=20.6
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHhc
Q 048538 157 PINPDFLAKAFQLDVDVVKDLEAK 180 (181)
Q Consensus 157 ~~~~e~l~~~~~v~~~~~~~~~~~ 180 (181)
+++...++..+++++..+.++.++
T Consensus 25 ~~s~~ela~~~g~s~~tv~r~l~~ 48 (67)
T cd00092 25 PLTRQEIADYLGLTRETVSRTLKE 48 (67)
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHH
Confidence 589999999999999998877654
No 188
>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the C-terminal subdomain of RCK.; GO: 0008324 cation transmembrane transporter activity, 0006813 potassium ion transport; PDB: 2BKP_A 1VCT_A 2BKO_A 2BKN_A 3L4B_C 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A ....
Probab=21.33 E-value=1.6e+02 Score=18.37 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=18.6
Q ss_pred CcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEEc
Q 048538 77 ATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVFP 116 (181)
Q Consensus 77 ~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~ip 116 (181)
+..++.|.+| ...... . . ...+++||.+++-
T Consensus 27 ~~~i~~i~R~-~~~~~p-~----~---~~~l~~gD~l~v~ 57 (71)
T PF02080_consen 27 GVRIVAIKRG-GEIIIP-D----G---DTVLQAGDILIVV 57 (71)
T ss_dssp TEEEEEEEET-EEEES-------T---T-BE-TTEEEEEE
T ss_pred CEEEEEEEEC-CEEECC-C----C---CCEECCCCEEEEE
Confidence 5678888999 332222 1 1 4889999999764
No 189
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=20.84 E-value=1.1e+02 Score=19.78 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=18.3
Q ss_pred CCCHHHHHHHcCCCHHHHHHHHh
Q 048538 157 PINPDFLAKAFQLDVDVVKDLEA 179 (181)
Q Consensus 157 ~~~~e~l~~~~~v~~~~~~~~~~ 179 (181)
..+.+.+|+.+|++.+++.++..
T Consensus 20 ~Pt~eEiA~~lgis~~~v~~~l~ 42 (78)
T PF04539_consen 20 EPTDEEIAEELGISVEEVRELLQ 42 (78)
T ss_dssp --BHHHHHHHHTS-HHHHHHHHH
T ss_pred CCCHHHHHHHHcccHHHHHHHHH
Confidence 47899999999999999998865
No 190
>PHA02095 hypothetical protein
Probab=20.70 E-value=1.7e+02 Score=19.66 Aligned_cols=22 Identities=14% Similarity=-0.068 Sum_probs=17.8
Q ss_pred ccCCCCcEEEEEEeCeEEEEEE
Q 048538 72 HTHPRATDILAVLEGTLYVGFV 93 (181)
Q Consensus 72 H~H~~~~E~~yVl~G~~~~~v~ 93 (181)
-||.+-.+-.||+.|..++.-+
T Consensus 19 s~~~g~iq~~yv~ng~wefsrv 40 (84)
T PHA02095 19 SMTEGVIQNGYVENGSWEFSRV 40 (84)
T ss_pred EeecceeeeeEEecCcEEEEec
Confidence 3788778889999999888644
No 191
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=20.57 E-value=99 Score=18.79 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=19.9
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhc
Q 048538 158 INPDFLAKAFQLDVDVVKDLEAK 180 (181)
Q Consensus 158 ~~~e~l~~~~~v~~~~~~~~~~~ 180 (181)
.+-+.|+..||+++..+-++..+
T Consensus 20 ~~~~~La~~FgIs~stvsri~~~ 42 (53)
T PF13613_consen 20 LTFQDLAYRFGISQSTVSRIFHE 42 (53)
T ss_pred CcHhHHhhheeecHHHHHHHHHH
Confidence 78899999999999999887653
No 192
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=20.43 E-value=5.7e+02 Score=22.45 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=47.2
Q ss_pred CCeEEEEeecCCCCCCccCceEEEEEEEcCCCcCCCccCCCCcEEEEEEeCeEEEEEEeccCCCCeeEeEEecCCcEEEE
Q 048538 36 LGFSVKIANVEQIPGLNTLGISAVRIDYAPYGQNPPHTHPRATDILAVLEGTLYVGFVTSNELNNTLIAKVLKKGDVFVF 115 (181)
Q Consensus 36 ~g~~~~~~~~~~~p~l~~~~~~~~~v~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~~~~~~~~~~~l~~GD~i~i 115 (181)
.|.++..++..+-- +...+.++.++.-.+....-..++..+-.+++..-++.+..++ |...-...|++||-+.+
T Consensus 261 sG~~VlvVd~~G~t----R~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~--G~~vsVt~Lk~GD~vL~ 334 (354)
T PF01959_consen 261 SGDEVLVVDADGRT----RTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPD--GEPVSVTELKPGDEVLV 334 (354)
T ss_pred CCCEEEEEeCCCCE----EEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCC--CCEeeeeecCCCCEEEE
Confidence 34445555544321 1456677777655554333222478888899998888877654 12233466999997754
Q ss_pred --cCCCeEEE
Q 048538 116 --PIGLIHFQ 123 (181)
Q Consensus 116 --p~g~~H~~ 123 (181)
+.+--|.-
T Consensus 335 ~~~~~~RHfG 344 (354)
T PF01959_consen 335 YLEEAGRHFG 344 (354)
T ss_pred EecCCCcccc
Confidence 33444443
No 193
>PF12728 HTH_17: Helix-turn-helix domain
Probab=20.20 E-value=1.5e+02 Score=17.35 Aligned_cols=22 Identities=9% Similarity=-0.011 Sum_probs=18.1
Q ss_pred CCHHHHHHHcCCCHHHHHHHHh
Q 048538 158 INPDFLAKAFQLDVDVVKDLEA 179 (181)
Q Consensus 158 ~~~e~l~~~~~v~~~~~~~~~~ 179 (181)
++.+.++..+++++..+.++.+
T Consensus 2 lt~~e~a~~l~is~~tv~~~~~ 23 (51)
T PF12728_consen 2 LTVKEAAELLGISRSTVYRWIR 23 (51)
T ss_pred CCHHHHHHHHCcCHHHHHHHHH
Confidence 4677888999999999888754
Done!