Query 048539
Match_columns 119
No_of_seqs 118 out of 1082
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 10:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 7.5E-36 1.6E-40 262.8 10.7 115 1-115 1-128 (1153)
2 PLN03194 putative disease resi 100.0 7.6E-34 1.6E-38 206.5 9.5 101 2-106 17-131 (187)
3 PF01582 TIR: TIR domain; Int 99.9 5.8E-24 1.2E-28 147.9 2.0 104 14-118 1-123 (141)
4 smart00255 TIR Toll - interleu 99.9 6.6E-22 1.4E-26 135.9 8.5 104 11-114 1-117 (140)
5 PF13676 TIR_2: TIR domain; PD 99.6 8.7E-16 1.9E-20 100.8 3.6 75 14-94 1-87 (102)
6 PF08937 DUF1863: MTH538 TIR-l 98.6 4.8E-08 1E-12 67.2 4.1 77 12-93 1-107 (130)
7 KOG3678 SARM protein (with ste 98.0 1.4E-05 3E-10 66.3 6.1 80 9-93 610-709 (832)
8 PF08357 SEFIR: SEFIR domain; 96.4 0.018 3.8E-07 39.9 6.7 52 13-64 2-70 (150)
9 PF10137 TIR-like: Predicted n 95.9 0.013 2.8E-07 40.4 4.0 49 13-64 1-62 (125)
10 COG4916 Uncharacterized protei 90.5 0.19 4E-06 39.1 2.1 88 8-100 174-281 (329)
11 PF13271 DUF4062: Domain of un 88.1 0.9 2E-05 28.6 3.7 54 14-68 2-68 (83)
12 COG4271 Predicted nucleotide-b 81.9 2.3 4.9E-05 32.0 3.7 84 13-102 84-199 (233)
13 PF14258 DUF4350: Domain of un 78.8 6.5 0.00014 23.5 4.6 57 31-89 10-68 (70)
14 PF09837 DUF2064: Uncharacteri 57.6 56 0.0012 22.0 6.3 80 9-91 8-95 (122)
15 KOG1016 Predicted DNA helicase 44.0 16 0.00034 33.2 1.9 64 12-75 407-487 (1387)
16 KOG1136 Predicted cleavage and 42.7 45 0.00098 27.4 4.2 46 48-93 190-241 (501)
17 PF11074 DUF2779: Domain of un 36.9 17 0.00036 25.1 0.8 35 42-78 60-94 (130)
18 KOG2792 Putative cytochrome C 34.7 45 0.00097 26.1 2.9 29 69-97 154-186 (280)
19 cd00138 PLDc Phospholipase D. 34.3 1.1E+02 0.0023 20.9 4.7 32 35-66 15-46 (176)
20 COG1168 MalY Bifunctional PLP- 31.0 1.4E+02 0.003 24.6 5.2 46 44-89 148-195 (388)
21 PRK08350 hypothetical protein; 28.3 47 0.001 26.8 2.2 28 9-36 279-306 (341)
22 COG2077 Tpx Peroxiredoxin [Pos 28.2 45 0.00098 24.0 1.8 22 53-74 75-98 (158)
23 COG4892 Predicted heme/steroid 27.4 37 0.0008 21.4 1.1 31 9-46 25-55 (81)
24 PF12913 SH3_6: SH3 domain of 27.3 31 0.00067 20.3 0.8 17 13-29 28-44 (54)
25 PF00350 Dynamin_N: Dynamin fa 26.4 2E+02 0.0044 19.2 5.7 46 44-92 120-165 (168)
26 PF05014 Nuc_deoxyrib_tr: Nucl 26.3 1.8E+02 0.004 18.6 5.6 38 42-80 51-88 (113)
27 KOG0095 GTPase Rab30, small G 25.6 2.5E+02 0.0055 20.4 5.3 71 45-117 71-144 (213)
28 cd03028 GRX_PICOT_like Glutare 23.5 49 0.0011 20.7 1.2 22 49-72 4-25 (90)
29 TIGR03667 Rv3369 PPOX class pr 23.0 2.4E+02 0.0052 18.8 5.5 58 42-118 3-60 (130)
30 cd02986 DLP Dim1 family, Dim1- 22.5 1.6E+02 0.0035 19.8 3.7 57 45-108 4-65 (114)
31 cd04142 RRP22 RRP22 subfamily. 22.1 3E+02 0.0065 19.6 5.8 54 46-102 74-130 (198)
32 PF05060 MGAT2: N-acetylglucos 21.8 2.7E+02 0.0059 22.6 5.4 34 53-93 59-92 (356)
33 KOG1954 Endocytosis/signaling 21.8 3.5E+02 0.0076 22.7 6.0 74 38-114 167-240 (532)
34 PF14033 DUF4246: Protein of u 21.7 94 0.002 26.2 2.9 52 68-119 58-113 (501)
35 cd02951 SoxW SoxW family; SoxW 21.5 2.4E+02 0.0051 18.1 5.4 30 43-74 3-33 (125)
36 TIGR01101 V_ATP_synt_F vacuola 21.0 1.8E+02 0.0039 19.6 3.7 43 43-95 49-91 (115)
37 cd01857 HSR1_MMR1 HSR1/MMR1. 20.7 2.7E+02 0.0058 18.5 5.6 34 45-79 4-37 (141)
38 KOG4465 Uncharacterized conser 20.7 49 0.0011 27.4 1.0 23 9-34 517-539 (598)
39 PF12637 TSCPD: TSCPD domain; 20.2 2.5E+02 0.0054 17.9 4.5 67 11-80 23-93 (95)
40 PF01113 DapB_N: Dihydrodipico 20.1 1.1E+02 0.0024 20.2 2.5 12 11-22 67-78 (124)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.5e-36 Score=262.75 Aligned_cols=115 Identities=50% Similarity=0.801 Sum_probs=109.6
Q ss_pred CCCCCCCC-CCcccEEEeceeccCCCCcHHhHHhhcc------------CCCcccHHHHHHHHHhcceeEEEEeccccCC
Q 048539 1 MASSSIAT-KGRYDVFLSFRGEDTGDNFTSHLFAALP------------NRGDEISLALLNAIEASKISIVIFSKNYASS 67 (119)
Q Consensus 1 ~~~~~~~~-~~~~dVFIS~s~~D~~~~f~~~L~~~L~------------~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S 67 (119)
||+|||++ .++|||||||+|+|+|++|++||+++|. ++|+.|.+++.+||++|+++|+|||++|++|
T Consensus 1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s 80 (1153)
T PLN03210 1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASS 80 (1153)
T ss_pred CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccc
Confidence 78887766 8999999999999999999999999998 6788999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcCCCeEEEEEeeeCCcccccccccHHHHHHHhh
Q 048539 68 KWCLDELVKILECKNCNGQMVVPVFYHVHPSDVRNQTGSFAKLEKKLK 115 (119)
Q Consensus 68 ~wC~~El~~~~~~~~~~~~~iiPIf~~v~p~~v~~~~~~~~~~f~~~~ 115 (119)
.||++||++|++++++++++|+||||+|+|+||++|+|.||++|.+++
T Consensus 81 ~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~ 128 (1153)
T PLN03210 81 SWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTC 128 (1153)
T ss_pred hHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHh
Confidence 999999999999998899999999999999999999999999999875
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=7.6e-34 Score=206.48 Aligned_cols=101 Identities=35% Similarity=0.602 Sum_probs=92.3
Q ss_pred CCCCCCCCCcccEEEeceeccCCCCcHHhHHhhcc-------------CCCcccHHHHHHHHHhcceeEEEEeccccCCh
Q 048539 2 ASSSIATKGRYDVFLSFRGEDTGDNFTSHLFAALP-------------NRGDEISLALLNAIEASKISIVIFSKNYASSK 68 (119)
Q Consensus 2 ~~~~~~~~~~~dVFIS~s~~D~~~~f~~~L~~~L~-------------~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S~ 68 (119)
+.|||++..+|||||||+|+|+|++|++||+.+|+ ++|+.|.+.|.+||++|+++|+|||++|++|.
T Consensus 17 ~~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~ 96 (187)
T PLN03194 17 YPSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESY 96 (187)
T ss_pred cccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccch
Confidence 35677779999999999999999999999999998 57889999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhcCCCeEEEEEeeeCCcccccc-ccc
Q 048539 69 WCLDELVKILECKNCNGQMVVPVFYHVHPSDVRNQ-TGS 106 (119)
Q Consensus 69 wC~~El~~~~~~~~~~~~~iiPIf~~v~p~~v~~~-~~~ 106 (119)
||++||..|+++. ..||||||+|+|++|++| .|.
T Consensus 97 WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~ 131 (187)
T PLN03194 97 FCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT 131 (187)
T ss_pred hHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC
Confidence 9999999999763 489999999999999996 443
No 3
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.88 E-value=5.8e-24 Score=147.94 Aligned_cols=104 Identities=41% Similarity=0.645 Sum_probs=90.3
Q ss_pred EEEecee-ccCCCCcHHhHHhhcc---------------CCCcccHHHHHHHHHhcceeEEEEeccccCChhHHHHHHHH
Q 048539 14 VFLSFRG-EDTGDNFTSHLFAALP---------------NRGDEISLALLNAIEASKISIVIFSKNYASSKWCLDELVKI 77 (119)
Q Consensus 14 VFIS~s~-~D~~~~f~~~L~~~L~---------------~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~~~ 77 (119)
|||||++ +| +..|+++|.++|+ .+|..+.++|.++|++||++|+|+|++|+.|.||++||..+
T Consensus 1 vfisy~~~~d-~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a 79 (141)
T PF01582_consen 1 VFISYSGKDD-REWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEA 79 (141)
T ss_dssp EEEEE-GHHG-HHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHH
T ss_pred cEEEeCCCCc-HHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhh
Confidence 8999999 55 4579999999987 57788899999999999999999999999999999999999
Q ss_pred HHhhhcC--CCeEEEEEeeeCCcccc-cccccHHHHHHHhhcCC
Q 048539 78 LECKNCN--GQMVVPVFYHVHPSDVR-NQTGSFAKLEKKLKMLP 118 (119)
Q Consensus 78 ~~~~~~~--~~~iiPIf~~v~p~~v~-~~~~~~~~~f~~~~~~~ 118 (119)
+++..+. ...|+|||++|.+.+++ .+.+.++..|......|
T Consensus 80 ~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~ 123 (141)
T PF01582_consen 80 LERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWP 123 (141)
T ss_dssp HHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETS
T ss_pred hhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCC
Confidence 9987543 48999999999999999 79999999887765544
No 4
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.87 E-value=6.6e-22 Score=135.91 Aligned_cols=104 Identities=50% Similarity=0.791 Sum_probs=88.7
Q ss_pred cccEEEecee-ccCCCCcHHhHHhhcc-----------CCCcccHHHHHHHHHhcceeEEEEeccccCChhHHHHHHHHH
Q 048539 11 RYDVFLSFRG-EDTGDNFTSHLFAALP-----------NRGDEISLALLNAIEASKISIVIFSKNYASSKWCLDELVKIL 78 (119)
Q Consensus 11 ~~dVFIS~s~-~D~~~~f~~~L~~~L~-----------~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~~~~ 78 (119)
.|||||||++ ++....|+.+|..+|. .+|.....+|.++|++|+++|+|+|++|+.|.||..|+..++
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~ 80 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAAL 80 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHHHH
Confidence 5899999999 3444589999999886 344444459999999999999999999999999999999999
Q ss_pred Hhhhc-CCCeEEEEEeeeCCcccccccccHHHHHHHh
Q 048539 79 ECKNC-NGQMVVPVFYHVHPSDVRNQTGSFAKLEKKL 114 (119)
Q Consensus 79 ~~~~~-~~~~iiPIf~~v~p~~v~~~~~~~~~~f~~~ 114 (119)
+...+ +..+||||+++..|+++..+.+.++..+...
T Consensus 81 ~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~ 117 (140)
T smart00255 81 ENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKN 117 (140)
T ss_pred HHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHH
Confidence 87643 6689999999988988999999988888664
No 5
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.59 E-value=8.7e-16 Score=100.80 Aligned_cols=75 Identities=35% Similarity=0.566 Sum_probs=65.3
Q ss_pred EEEeceeccCCCCcHHhHHhhcc------------CCCcccHHHHHHHHHhcceeEEEEeccccCChhHHHHHHHHHHhh
Q 048539 14 VFLSFRGEDTGDNFTSHLFAALP------------NRGDEISLALLNAIEASKISIVIFSKNYASSKWCLDELVKILECK 81 (119)
Q Consensus 14 VFIS~s~~D~~~~f~~~L~~~L~------------~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~~~~~~~ 81 (119)
|||||+++|. .++..|...|+ .+|..+.+.|.++|++|+..|+++|++|..|+||..|+..+.+
T Consensus 1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-- 76 (102)
T PF13676_consen 1 VFISYSSEDR--EFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-- 76 (102)
T ss_dssp EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence 8999999995 69999999997 5788888899999999999999999999999999999999843
Q ss_pred hcCCCeEEEEEee
Q 048539 82 NCNGQMVVPVFYH 94 (119)
Q Consensus 82 ~~~~~~iiPIf~~ 94 (119)
.+..||||.++
T Consensus 77 --~~~~iipv~~~ 87 (102)
T PF13676_consen 77 --RGKPIIPVRLD 87 (102)
T ss_dssp --TSESEEEEECS
T ss_pred --CCCEEEEEEEC
Confidence 44589999953
No 6
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.61 E-value=4.8e-08 Score=67.17 Aligned_cols=77 Identities=29% Similarity=0.468 Sum_probs=41.4
Q ss_pred ccEEEeceeccCCCCcHHhHHhhccC------------------------------CCcccHHHHHHHHHhcceeEEEEe
Q 048539 12 YDVFLSFRGEDTGDNFTSHLFAALPN------------------------------RGDEISLALLNAIEASKISIVIFS 61 (119)
Q Consensus 12 ~dVFIS~s~~D~~~~f~~~L~~~L~~------------------------------~G~~i~~~i~~aI~~Sr~~IvvlS 61 (119)
|+|||||++.|.. .....|...+.. ....|...|.++|.+|.++||+++
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5799999999863 244433332220 112577889999999999999999
Q ss_pred ccccCChhHHHHHHHHHHhhhcCCCeEEEEEe
Q 048539 62 KNYASSKWCLDELVKILECKNCNGQMVVPVFY 93 (119)
Q Consensus 62 ~~y~~S~wC~~El~~~~~~~~~~~~~iiPIf~ 93 (119)
++-..|.|+..|+..+++ .+..||-|-+
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~ 107 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVYL 107 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEET
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEEC
Confidence 999999999999999886 3457777765
No 7
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.00 E-value=1.4e-05 Score=66.30 Aligned_cols=80 Identities=28% Similarity=0.488 Sum_probs=58.2
Q ss_pred CCcccEEEeceeccCCCCcHHhHHhhccCCC------------cccHHHHHHHHHhcceeEEEEecccc----CC----h
Q 048539 9 KGRYDVFLSFRGEDTGDNFTSHLFAALPNRG------------DEISLALLNAIEASKISIVIFSKNYA----SS----K 68 (119)
Q Consensus 9 ~~~~dVFIS~s~~D~~~~f~~~L~~~L~~~G------------~~i~~~i~~aI~~Sr~~IvvlS~~y~----~S----~ 68 (119)
..+.||||||+.... ...++-|---|...| ..+.+.+.+.|...+.+|+|++|+-+ +. .
T Consensus 610 skq~DVFISYRRstG-nQLASLiKV~LQL~GyrVFIDVdKL~AGKFdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeD 688 (832)
T KOG3678|consen 610 SKQIDVFISYRRSTG-NQLASLIKVLLQLRGYRVFIDVDKLYAGKFDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCED 688 (832)
T ss_pred cCCcceEEEeecccc-HHHHHHHHHHHHhcCceEEEehhhhhcccccHHHHHHHHhhheeEEEeCcchHHHHhccccHHH
Confidence 578999999987654 235554444444333 23567889999999999999999853 33 5
Q ss_pred hHHHHHHHHHHhhhcCCCeEEEEEe
Q 048539 69 WCLDELVKILECKNCNGQMVVPVFY 93 (119)
Q Consensus 69 wC~~El~~~~~~~~~~~~~iiPIf~ 93 (119)
|...|+..++++++ .|||||=
T Consensus 689 WVHKEl~~Afe~~K----NIiPI~D 709 (832)
T KOG3678|consen 689 WVHKELKCAFEHQK----NIIPIFD 709 (832)
T ss_pred HHHHHHHHHHHhcC----Ceeeeec
Confidence 66778888887764 8999983
No 8
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=96.39 E-value=0.018 Score=39.87 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=34.7
Q ss_pred cEEEeceeccCC-CCcHHhHHhhccCC----------------CcccHHHHHHHHHhcceeEEEEeccc
Q 048539 13 DVFLSFRGEDTG-DNFTSHLFAALPNR----------------GDEISLALLNAIEASKISIVIFSKNY 64 (119)
Q Consensus 13 dVFIS~s~~D~~-~~f~~~L~~~L~~~----------------G~~i~~~i~~aI~~Sr~~IvvlS~~y 64 (119)
-|||||++.... ...|..|...|+.. +.....=+.+++++++.+|+|+||.+
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 599999985431 23455555556522 33445556678999999999999543
No 9
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=95.92 E-value=0.013 Score=40.42 Aligned_cols=49 Identities=24% Similarity=0.314 Sum_probs=37.3
Q ss_pred cEEEeceeccCCCCcHHhHHhhcc-------------CCCcccHHHHHHHHHhcceeEEEEeccc
Q 048539 13 DVFLSFRGEDTGDNFTSHLFAALP-------------NRGDEISLALLNAIEASKISIVIFSKNY 64 (119)
Q Consensus 13 dVFIS~s~~D~~~~f~~~L~~~L~-------------~~G~~i~~~i~~aI~~Sr~~IvvlS~~y 64 (119)
.|||.|+ .|. ..+..+...|+ ..|..+.+.+.+...+++.+|++++|+=
T Consensus 1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD 62 (125)
T PF10137_consen 1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDD 62 (125)
T ss_pred CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccc
Confidence 3899998 443 34444444443 6788999999999999999999999963
No 10
>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]
Probab=90.53 E-value=0.19 Score=39.10 Aligned_cols=88 Identities=14% Similarity=0.068 Sum_probs=60.1
Q ss_pred CCCcccEEEeceeccCCCCcHHhHHhhcc-CCC----------------cccHHHHHHHH--HhcceeEEEEeccccCCh
Q 048539 8 TKGRYDVFLSFRGEDTGDNFTSHLFAALP-NRG----------------DEISLALLNAI--EASKISIVIFSKNYASSK 68 (119)
Q Consensus 8 ~~~~~dVFIS~s~~D~~~~f~~~L~~~L~-~~G----------------~~i~~~i~~aI--~~Sr~~IvvlS~~y~~S~ 68 (119)
+.+.||+=+||.|+-. ..++.+..+++ ..| .++. .+..-+ +.|++.+|.+..+|..-.
T Consensus 174 ~~~~~DiG~SFaGEAR--~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~sL~-~~L~~~Y~~rC~~~~VF~~~~Y~~K~ 250 (329)
T COG4916 174 SEKPVDSGISFAGEAR--NLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGSLV-STLDPGYDIRCVVTTVFNTGSYICKS 250 (329)
T ss_pred cccccceeeEeehhhh--hHHHHHHHhhhcccCCceeeeechhhccccCccHH-HhcccccCceEEEEEEEeCCceEEee
Confidence 4889999999999874 68888887776 111 1222 222223 268999999999999999
Q ss_pred hHHHHHHHHHHhhhcCCCeEEEEEe-eeCCccc
Q 048539 69 WCLDELVKILECKNCNGQMVVPVFY-HVHPSDV 100 (119)
Q Consensus 69 wC~~El~~~~~~~~~~~~~iiPIf~-~v~p~~v 100 (119)
||..|...+-+-. .-+.+.||.| +++...+
T Consensus 251 ~c~~E~~~~r~~~--~~d~~~rI~~~~~d~~a~ 281 (329)
T COG4916 251 TCHIEGLEGRLNP--ILDTGFRIKYLYADNIAI 281 (329)
T ss_pred eeccchhhccccc--cccccceEEEEecCCccc
Confidence 9999987754321 2246777776 4554444
No 11
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=88.09 E-value=0.9 Score=28.58 Aligned_cols=54 Identities=22% Similarity=0.256 Sum_probs=36.9
Q ss_pred EEEeceeccCCCCcHHhHHhhcc-------------CCCcccHHHHHHHHHhcceeEEEEeccccCCh
Q 048539 14 VFLSFRGEDTGDNFTSHLFAALP-------------NRGDEISLALLNAIEASKISIVIFSKNYASSK 68 (119)
Q Consensus 14 VFIS~s~~D~~~~f~~~L~~~L~-------------~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S~ 68 (119)
||||-.-.|.. .--..|.+.+. ..+....+.+.+.|++|++.|.++..+|-...
T Consensus 2 VFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~~ 68 (83)
T PF13271_consen 2 VFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSVP 68 (83)
T ss_pred EEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCCC
Confidence 88988777742 22233333332 23556677889999999999999999996543
No 12
>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]
Probab=81.90 E-value=2.3 Score=31.96 Aligned_cols=84 Identities=23% Similarity=0.262 Sum_probs=54.9
Q ss_pred cEEEeceeccCCCCcHHhHHhhcc--------------CCCcccHHHHHHHHHhcceeEEEEecccc-----CC---hh-
Q 048539 13 DVFLSFRGEDTGDNFTSHLFAALP--------------NRGDEISLALLNAIEASKISIVIFSKNYA-----SS---KW- 69 (119)
Q Consensus 13 dVFIS~s~~D~~~~f~~~L~~~L~--------------~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~-----~S---~w- 69 (119)
-|||-|+++- .+.....+|. ..|..+.+.+.+-|.++..+|++.+|+=. .| .|
T Consensus 84 kvFvv~ghd~----iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~p 159 (233)
T COG4271 84 KVFVVSGHDA----IARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAFP 159 (233)
T ss_pred eEEEEeccHH----HHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhccc
Confidence 8999996653 4444444433 56889999999999999999999999854 22 22
Q ss_pred -----HHHHHHHHHHhhhcCCCeEEEEEe---ee-CCccccc
Q 048539 70 -----CLDELVKILECKNCNGQMVVPVFY---HV-HPSDVRN 102 (119)
Q Consensus 70 -----C~~El~~~~~~~~~~~~~iiPIf~---~v-~p~~v~~ 102 (119)
...||-.++.+. ++.+|+-+.- +| -|||+..
T Consensus 160 raRqNVifELGm~mgrL--gRkrv~Il~k~~envelPSDi~G 199 (233)
T COG4271 160 RARQNVIFELGMFMGRL--GRKRVMILMKRDENVELPSDIAG 199 (233)
T ss_pred cccccchhhHhhHHhhc--ccceEEEEecccccccCccccCc
Confidence 345776666553 3344444433 12 4666654
No 13
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=78.79 E-value=6.5 Score=23.50 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=34.4
Q ss_pred HHhhccCCCcccH--HHHHHHHHhcceeEEEEeccccCChhHHHHHHHHHHhhhcCCCeEE
Q 048539 31 LFAALPNRGDEIS--LALLNAIEASKISIVIFSKNYASSKWCLDELVKILECKNCNGQMVV 89 (119)
Q Consensus 31 L~~~L~~~G~~i~--~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~ii 89 (119)
+++-|+..|..+. ....++++...-+++++++.+.-+. -.++..+.+..+.+++.||
T Consensus 10 ~~~~L~~~g~~v~~~~~~~~~l~~~~~tll~i~~~~~~~~--~~~~~~l~~~v~~G~~lvl 68 (70)
T PF14258_consen 10 LYQLLEEQGVKVERWRKPYEALEADDGTLLVIGPDLRLSE--PEEAEALLEWVEAGNTLVL 68 (70)
T ss_pred HHHHHHHCCCeeEEecccHHHhCCCCCEEEEEeCCCCCCc--hHHHHHHHHHHHcCCEEEE
Confidence 4455555565543 2345577778889999999966554 3455555554445555544
No 14
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=57.61 E-value=56 Score=21.99 Aligned_cols=80 Identities=15% Similarity=0.266 Sum_probs=41.6
Q ss_pred CCcccEEEeceeccCCCCcHHh--HHhhcc---CCCcccHHHHHHHHHhc---ceeEEEEeccccCChhHHHHHHHHHHh
Q 048539 9 KGRYDVFLSFRGEDTGDNFTSH--LFAALP---NRGDEISLALLNAIEAS---KISIVIFSKNYASSKWCLDELVKILEC 80 (119)
Q Consensus 9 ~~~~dVFIS~s~~D~~~~f~~~--L~~~L~---~~G~~i~~~i~~aI~~S---r~~IvvlS~~y~~S~wC~~El~~~~~~ 80 (119)
...+|++|.|+..+.+ ..... +...+. +.|..+.+.+.++++.. .-.|+++.-+--. -+...+..+.+.
T Consensus 8 ~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~Q~g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~--l~~~~l~~A~~~ 84 (122)
T PF09837_consen 8 ADGADVVLAYTPDGDH-AAFRQLWLPSGFSFFPQQGGDLGERMANAFQQAARGYEPVVLIGSDCPD--LTPDDLEQAFEA 84 (122)
T ss_dssp TSSSEEEEEE----TT-HHHHHHHH-TTSEEEE--SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT----HHHHHHHHHH
T ss_pred CCCcCEEEEEcCCccH-HHHhccccCCCCEEeecCCCCHHHHHHHHHHHHHcCCCcEEEEcCCCCC--CCHHHHHHHHHH
Confidence 5678999999887754 33332 222222 88999999888888766 2255555554322 245566666666
Q ss_pred hhcCCCeEEEE
Q 048539 81 KNCNGQMVVPV 91 (119)
Q Consensus 81 ~~~~~~~iiPI 91 (119)
.+....++-|-
T Consensus 85 L~~~d~VlgPa 95 (122)
T PF09837_consen 85 LQRHDVVLGPA 95 (122)
T ss_dssp TTT-SEEEEEB
T ss_pred hccCCEEEeec
Confidence 55445555563
No 15
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=44.04 E-value=16 Score=33.20 Aligned_cols=64 Identities=23% Similarity=0.359 Sum_probs=41.8
Q ss_pred ccEEEeceeccCCCCcHHhHHhhccCCCc------------ccHHHHHHHHH--hcceeEEEEe---ccccCChhHHHHH
Q 048539 12 YDVFLSFRGEDTGDNFTSHLFAALPNRGD------------EISLALLNAIE--ASKISIVIFS---KNYASSKWCLDEL 74 (119)
Q Consensus 12 ~dVFIS~s~~D~~~~f~~~L~~~L~~~G~------------~i~~~i~~aI~--~Sr~~IvvlS---~~y~~S~wC~~El 74 (119)
.-+||--.++|.+.+|.+.+++||.+||- ++...|..++. ++|.-||+-. .|=+--.||+-.+
T Consensus 407 ~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDF 486 (1387)
T KOG1016|consen 407 SSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDF 486 (1387)
T ss_pred CCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhhee
Confidence 45788888899888999999999998873 34445544444 3555555422 1223348998766
Q ss_pred H
Q 048539 75 V 75 (119)
Q Consensus 75 ~ 75 (119)
+
T Consensus 487 V 487 (1387)
T KOG1016|consen 487 V 487 (1387)
T ss_pred c
Confidence 4
No 16
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=42.69 E-value=45 Score=27.36 Aligned_cols=46 Identities=30% Similarity=0.633 Sum_probs=34.1
Q ss_pred HHHHhcceeEEEEecccc----CChhHHH-HHHHHH-HhhhcCCCeEEEEEe
Q 048539 48 NAIEASKISIVIFSKNYA----SSKWCLD-ELVKIL-ECKNCNGQMVVPVFY 93 (119)
Q Consensus 48 ~aI~~Sr~~IvvlS~~y~----~S~wC~~-El~~~~-~~~~~~~~~iiPIf~ 93 (119)
..|..+|-.++|--..|+ .|+.|.+ |+.+.+ ++...++.++||||-
T Consensus 190 A~id~~rpdlLIsESTYattiRdskr~rERdFLk~VhecVa~GGkvlIPvFA 241 (501)
T KOG1136|consen 190 AWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHECVARGGKVLIPVFA 241 (501)
T ss_pred hhhccccCceEEeeccceeeeccccchhHHHHHHHHHHHHhcCCeEEEEeee
Confidence 456778888887777775 4788876 666654 555678899999994
No 17
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=36.91 E-value=17 Score=25.09 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=23.2
Q ss_pred cHHHHHHHHHhcceeEEEEeccccCChhHHHHHHHHH
Q 048539 42 ISLALLNAIEASKISIVIFSKNYASSKWCLDELVKIL 78 (119)
Q Consensus 42 i~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~~~~ 78 (119)
+.+.+.++|..-...|+|+...|-.+ |+.||..+.
T Consensus 60 ~~~~L~~~i~~~~g~ivvyN~sfE~~--rL~ela~~~ 94 (130)
T PF11074_consen 60 LIEALIKAIGSIYGSIVVYNKSFEKT--RLKELAELF 94 (130)
T ss_pred HHHHHHHHhhhhcCeEEEechHHHHH--HHHHHHHHh
Confidence 34455555555547888998887655 888887653
No 18
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=34.73 E-value=45 Score=26.10 Aligned_cols=29 Identities=38% Similarity=0.589 Sum_probs=20.3
Q ss_pred hHHHHHHHH---HHhhh-cCCCeEEEEEeeeCC
Q 048539 69 WCLDELVKI---LECKN-CNGQMVVPVFYHVHP 97 (119)
Q Consensus 69 wC~~El~~~---~~~~~-~~~~~iiPIf~~v~p 97 (119)
=|=+||.++ ++..+ ..+..++|||.-|+|
T Consensus 154 ICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDP 186 (280)
T KOG2792|consen 154 ICPDELEKMSAVVDEIEAKPGLPPVPLFISVDP 186 (280)
T ss_pred cChHHHHHHHHHHHHHhccCCCCccceEEEeCc
Confidence 377787764 44443 445677799999999
No 19
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=34.31 E-value=1.1e+02 Score=20.91 Aligned_cols=32 Identities=34% Similarity=0.169 Sum_probs=24.8
Q ss_pred ccCCCcccHHHHHHHHHhcceeEEEEeccccC
Q 048539 35 LPNRGDEISLALLNAIEASKISIVIFSKNYAS 66 (119)
Q Consensus 35 L~~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~ 66 (119)
+...|..+.+.+.+.|.+++..|.+.+..|..
T Consensus 15 ~~~~~~~~~~~i~~~I~~A~~~I~i~~~~~~~ 46 (176)
T cd00138 15 KRVGGRSDLDALLEAISNAKKSIYIASFYLSP 46 (176)
T ss_pred cCcCcchHHHHHHHHHHhhheEEEEEEeEecc
Confidence 33466777788889999999999988886654
No 20
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=30.97 E-value=1.4e+02 Score=24.61 Aligned_cols=46 Identities=24% Similarity=0.255 Sum_probs=33.2
Q ss_pred HHHHHHHHhcc-eeEEEEecc-ccCChhHHHHHHHHHHhhhcCCCeEE
Q 048539 44 LALLNAIEASK-ISIVIFSKN-YASSKWCLDELVKILECKNCNGQMVV 89 (119)
Q Consensus 44 ~~i~~aI~~Sr-~~IvvlS~~-y~~S~wC~~El~~~~~~~~~~~~~ii 89 (119)
+.+.+++.+.+ +..++++|+ =...-|-.+||.++.+....-+.+||
T Consensus 148 ~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VI 195 (388)
T COG1168 148 DALEKAFVDERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVI 195 (388)
T ss_pred HHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEE
Confidence 46777888887 555666665 47788999999999887654444444
No 21
>PRK08350 hypothetical protein; Provisional
Probab=28.32 E-value=47 Score=26.76 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=24.7
Q ss_pred CCcccEEEeceeccCCCCcHHhHHhhcc
Q 048539 9 KGRYDVFLSFRGEDTGDNFTSHLFAALP 36 (119)
Q Consensus 9 ~~~~dVFIS~s~~D~~~~f~~~L~~~L~ 36 (119)
...|-+.+|||+.++.++|+-||.-++.
T Consensus 279 ~~g~~~vvSHRSGETeD~~IAdLaVa~~ 306 (341)
T PRK08350 279 SERITPILAEAKYESADEALPHLAVGLR 306 (341)
T ss_pred HcCCeEEeecCCCCCcchhHHHHHHHhC
Confidence 4568899999999888899999999986
No 22
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=28.19 E-value=45 Score=23.96 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=17.7
Q ss_pred cceeEEEEecc--ccCChhHHHHH
Q 048539 53 SKISIVIFSKN--YASSKWCLDEL 74 (119)
Q Consensus 53 Sr~~IvvlS~~--y~~S~wC~~El 74 (119)
....+.++|.+ |+++.||..|=
T Consensus 75 ~~~~Vl~IS~DLPFAq~RfC~aeG 98 (158)
T COG2077 75 GNTVVLCISMDLPFAQKRFCGAEG 98 (158)
T ss_pred CCcEEEEEeCCChhHHhhhhhhcC
Confidence 34678888988 89999998763
No 23
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=27.38 E-value=37 Score=21.35 Aligned_cols=31 Identities=29% Similarity=0.291 Sum_probs=21.6
Q ss_pred CCcccEEEeceeccCCCCcHHhHHhhccCCCcccHHHH
Q 048539 9 KGRYDVFLSFRGEDTGDNFTSHLFAALPNRGDEISLAL 46 (119)
Q Consensus 9 ~~~~dVFIS~s~~D~~~~f~~~L~~~L~~~G~~i~~~i 46 (119)
+.-|||-.||++.|.+ ++.|...|+.+++++
T Consensus 25 G~VYDvS~s~~W~dGt-------HqglhsaG~DLs~~~ 55 (81)
T COG4892 25 GTVYDVSLSPSWGDGT-------HQGLHSAGKDLSSEF 55 (81)
T ss_pred CEEEeeccCcccCCCc-------cccccccchhHHHHH
Confidence 4579999999999964 445555666665544
No 24
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=27.32 E-value=31 Score=20.29 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=12.4
Q ss_pred cEEEeceeccCCCCcHH
Q 048539 13 DVFLSFRGEDTGDNFTS 29 (119)
Q Consensus 13 dVFIS~s~~D~~~~f~~ 29 (119)
=|+|+|.++|.++.|+.
T Consensus 28 Pv~i~H~S~D~~W~fV~ 44 (54)
T PF12913_consen 28 PVYILHTSRDGAWAFVQ 44 (54)
T ss_dssp EEEEEEE-TTSSEEEEE
T ss_pred CEEEEEECCCCCEEEEe
Confidence 38999999998766653
No 25
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=26.40 E-value=2e+02 Score=19.18 Aligned_cols=46 Identities=7% Similarity=0.047 Sum_probs=30.8
Q ss_pred HHHHHHHHhcceeEEEEeccccCChhHHHHHHHHHHhhhcCCCeEEEEE
Q 048539 44 LALLNAIEASKISIVIFSKNYASSKWCLDELVKILECKNCNGQMVVPVF 92 (119)
Q Consensus 44 ~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~iiPIf 92 (119)
+-+.+.+..+++.|+|++.+- .|...+...+.+..+....+.+-|+
T Consensus 120 ~~~~~~~~~~d~vi~V~~~~~---~~~~~~~~~l~~~~~~~~~~~i~V~ 165 (168)
T PF00350_consen 120 EITEEYLPKADVVIFVVDANQ---DLTESDMEFLKQMLDPDKSRTIFVL 165 (168)
T ss_dssp HHHHHHHSTTEEEEEEEETTS---TGGGHHHHHHHHHHTTTCSSEEEEE
T ss_pred HHHHHhhccCCEEEEEeccCc---ccchHHHHHHHHHhcCCCCeEEEEE
Confidence 445677789999999996654 5565566666666555555566554
No 26
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=26.28 E-value=1.8e+02 Score=18.63 Aligned_cols=38 Identities=18% Similarity=-0.035 Sum_probs=27.9
Q ss_pred cHHHHHHHHHhcceeEEEEeccccCChhHHHHHHHHHHh
Q 048539 42 ISLALLNAIEASKISIVIFSKNYASSKWCLDELVKILEC 80 (119)
Q Consensus 42 i~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~~~~~~ 80 (119)
|.+.-.++|++|++.|+++...- .+.=+..|+-.+...
T Consensus 51 i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~al 88 (113)
T PF05014_consen 51 IFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYAL 88 (113)
T ss_dssp HHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHC
Confidence 34444679999999999988755 556688899888754
No 27
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.58 E-value=2.5e+02 Score=20.43 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=45.3
Q ss_pred HHHHHHHhc-ceeEEEEeccccCChhHHHHHHHHHHhhhcCCCeEEEEEe--eeCCcccccccccHHHHHHHhhcC
Q 048539 45 ALLNAIEAS-KISIVIFSKNYASSKWCLDELVKILECKNCNGQMVVPVFY--HVHPSDVRNQTGSFAKLEKKLKML 117 (119)
Q Consensus 45 ~i~~aI~~S-r~~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~iiPIf~--~v~p~~v~~~~~~~~~~f~~~~~~ 117 (119)
.|...-..| +..|+|+--....|--|+-|...-++... +..|+-|+. +++..|-|.....-|+.|.+.+.|
T Consensus 71 sitqsyyrsahalilvydiscqpsfdclpewlreie~ya--n~kvlkilvgnk~d~~drrevp~qigeefs~~qdm 144 (213)
T KOG0095|consen 71 SITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYA--NNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDM 144 (213)
T ss_pred HHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHh--hcceEEEeeccccchhhhhhhhHHHHHHHHHhhhh
Confidence 344444344 44666666667777788888766554432 246777776 577777666566668888887654
No 28
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=23.49 E-value=49 Score=20.68 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=13.1
Q ss_pred HHHhcceeEEEEeccccCChhHHH
Q 048539 49 AIEASKISIVIFSKNYASSKWCLD 72 (119)
Q Consensus 49 aI~~Sr~~IvvlS~~y~~S~wC~~ 72 (119)
.|++. -|+|||+.+.+.+||-+
T Consensus 4 ~i~~~--~vvvf~k~~~~~~~Cp~ 25 (90)
T cd03028 4 LIKEN--PVVLFMKGTPEEPRCGF 25 (90)
T ss_pred hhccC--CEEEEEcCCCCCCCCcH
Confidence 34444 45666877766666653
No 29
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=22.99 E-value=2.4e+02 Score=18.78 Aligned_cols=58 Identities=10% Similarity=0.150 Sum_probs=37.3
Q ss_pred cHHHHHHHHHhcceeEEEEeccccCChhHHHHHHHHHHhhhcCCCeEEEEEeeeCCcccccccccHHHHHHHhhcCC
Q 048539 42 ISLALLNAIEASKISIVIFSKNYASSKWCLDELVKILECKNCNGQMVVPVFYHVHPSDVRNQTGSFAKLEKKLKMLP 118 (119)
Q Consensus 42 i~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~iiPIf~~v~p~~v~~~~~~~~~~f~~~~~~~ 118 (119)
+++++.+.+++.+...+-... .++.-.+.||.+..+...+.-.+..-+.+...++.+|
T Consensus 3 ~~~~~~~~L~~~~~~~LaT~~-------------------~dG~P~~~P~~~~~~d~~l~~~t~~~s~K~~~l~~np 60 (130)
T TIGR03667 3 FTAKVARRLREESIVWLTTVR-------------------RSGQPQPVPVWFLWDGTEFLIYSRPQAAKLRNIRRNP 60 (130)
T ss_pred CCHHHHHHhcCCCeEEEEEEC-------------------CCCceEEEEEEEEEECCEEEEEeCCcCHHHHHHhhCC
Confidence 456777777777765432211 1345688999886666666656655567777777776
No 30
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=22.50 E-value=1.6e+02 Score=19.83 Aligned_cols=57 Identities=25% Similarity=0.225 Sum_probs=32.8
Q ss_pred HHHHHHH--hcceeEEEEeccccCChhHHH--HHHHHHHhhh-cCCCeEEEEEeeeCCcccccccccHH
Q 048539 45 ALLNAIE--ASKISIVIFSKNYASSKWCLD--ELVKILECKN-CNGQMVVPVFYHVHPSDVRNQTGSFA 108 (119)
Q Consensus 45 ~i~~aI~--~Sr~~IvvlS~~y~~S~wC~~--El~~~~~~~~-~~~~~iiPIf~~v~p~~v~~~~~~~~ 108 (119)
+..++|. +.++.|+-|.. .||.- .+.-+++... +-... -+||.|+..++......|+
T Consensus 4 ~~d~~i~~~~~klVVVdF~a-----~WC~pCk~mdp~l~ela~~~~~~--~~f~kVDVDev~dva~~y~ 65 (114)
T cd02986 4 EVDQAIKSTAEKVLVLRFGR-----DEDAVCLQLDDILSKTSHDLSKM--ASIYLVDVDKVPVYTQYFD 65 (114)
T ss_pred HHHHHHHhcCCCEEEEEEeC-----CCChhHHHHHHHHHHHHHHccCc--eEEEEEeccccHHHHHhcC
Confidence 3445555 45666666665 67743 5555555532 22222 5678888888876555444
No 31
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=22.11 E-value=3e+02 Score=19.55 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=31.0
Q ss_pred HHHHHHhcceeEEEEeccccCChhHHHHHHHHHHhhhc-C--CCeEEEEEeeeCCccccc
Q 048539 46 LLNAIEASKISIVIFSKNYASSKWCLDELVKILECKNC-N--GQMVVPVFYHVHPSDVRN 102 (119)
Q Consensus 46 i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~~~~~~~~~-~--~~~iiPIf~~v~p~~v~~ 102 (119)
...+++++++.|+|++.+ +.+-.+++....+...+ . ...-+||+.=..+.|+..
T Consensus 74 ~~~~~~~ad~iilv~D~~---~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 74 RFRGLRNSRAFILVYDIC---SPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred HHhhhccCCEEEEEEECC---CHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 345678999999999975 44444545444333211 0 112256666556666643
No 32
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=21.82 E-value=2.7e+02 Score=22.62 Aligned_cols=34 Identities=24% Similarity=0.499 Sum_probs=24.4
Q ss_pred cceeEEEEeccccCChhHHHHHHHHHHhhhcCCCeEEEEEe
Q 048539 53 SKISIVIFSKNYASSKWCLDELVKILECKNCNGQMVVPVFY 93 (119)
Q Consensus 53 Sr~~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~iiPIf~ 93 (119)
=..+++|||.+|-. .|+..+++..+ --+|+.|||
T Consensus 59 I~~~llifSHd~~~-----~ein~~v~~I~--Fc~v~QIf~ 92 (356)
T PF05060_consen 59 IEEALLIFSHDFYS-----EEINDLVQSID--FCRVMQIFY 92 (356)
T ss_pred ccceEEEEeccCCh-----HHHHHHHHhCC--cceeEEEec
Confidence 34589999999966 47777776542 227888887
No 33
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.81 E-value=3.5e+02 Score=22.74 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=49.8
Q ss_pred CCcccHHHHHHHHHhcceeEEEEeccccCChhHHHHHHHHHHhhhcCCCeEEEEEeeeCCcccccccccHHHHHHHh
Q 048539 38 RGDEISLALLNAIEASKISIVIFSKNYASSKWCLDELVKILECKNCNGQMVVPVFYHVHPSDVRNQTGSFAKLEKKL 114 (119)
Q Consensus 38 ~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~iiPIf~~v~p~~v~~~~~~~~~~f~~~ 114 (119)
+|-.+..-+..-++.++..|++|-++=+. ..+|+..++...+.....|--|+=+.+.-+-.+....||.-.+.+
T Consensus 167 R~ydF~~v~~WFaeR~D~IiLlfD~hKLD---IsdEf~~vi~aLkG~EdkiRVVLNKADqVdtqqLmRVyGALmWsl 240 (532)
T KOG1954|consen 167 RGYDFTGVLEWFAERVDRIILLFDAHKLD---ISDEFKRVIDALKGHEDKIRVVLNKADQVDTQQLMRVYGALMWSL 240 (532)
T ss_pred ccCChHHHHHHHHHhccEEEEEechhhcc---ccHHHHHHHHHhhCCcceeEEEeccccccCHHHHHHHHHHHHHhh
Confidence 34456777778889999999999988665 457898888876544444444443444444444567788776654
No 34
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=21.70 E-value=94 Score=26.23 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHhhhcCCC-eEEEEEeeeCCcccc---cccccHHHHHHHhhcCCC
Q 048539 68 KWCLDELVKILECKNCNGQ-MVVPVFYHVHPSDVR---NQTGSFAKLEKKLKMLPE 119 (119)
Q Consensus 68 ~wC~~El~~~~~~~~~~~~-~iiPIf~~v~p~~v~---~~~~~~~~~f~~~~~~~~ 119 (119)
.||..||..-.+..++.+. .++..--.|-.+|-. .....+..++..++..|+
T Consensus 58 ~~~~~EL~~ka~~~~~tg~v~v~d~~~~V~kSD~~v~~~l~~~L~~av~~Le~~p~ 113 (501)
T PF14033_consen 58 DWCIAELRDKAKYFEETGLVPVLDSSSGVWKSDTLVPEELREELKDAVAPLEDVPE 113 (501)
T ss_pred HHHHHHHHHHHHHHhhcCCEEEECCccceEEecCCCCHHHHHHHHHHHHHHHhhhc
Confidence 6999999865444333332 222221133333332 234567788888887763
No 35
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=21.45 E-value=2.4e+02 Score=18.14 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=20.0
Q ss_pred HHHHHHHHHhc-ceeEEEEeccccCChhHHHHH
Q 048539 43 SLALLNAIEAS-KISIVIFSKNYASSKWCLDEL 74 (119)
Q Consensus 43 ~~~i~~aI~~S-r~~IvvlS~~y~~S~wC~~El 74 (119)
.+++.+++++- +..++.|.-.. ..||....
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a~w--C~~C~~~~ 33 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQPG--CPYCDKLK 33 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCC--CHHHHHHH
Confidence 45778888888 87777776443 35565543
No 36
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=20.99 E-value=1.8e+02 Score=19.60 Aligned_cols=43 Identities=9% Similarity=0.281 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcceeEEEEeccccCChhHHHHHHHHHHhhhcCCCeEEEEEeee
Q 048539 43 SLALLNAIEASKISIVIFSKNYASSKWCLDELVKILECKNCNGQMVVPVFYHV 95 (119)
Q Consensus 43 ~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~iiPIf~~v 95 (119)
.+.+.+.+.+.++.|++++.++++ ++...+++.+ .++|.+..+
T Consensus 49 ~~~~~~~l~~~digIIlIte~~a~------~i~~~I~~~~----~~~PaIieI 91 (115)
T TIGR01101 49 EDCFNRFLKRDDIAIILINQHIAE------MIRHAVDAHT----RSIPAVLEI 91 (115)
T ss_pred HHHHHHHhhcCCeEEEEEcHHHHH------HhHHHHHhcC----CcCCEEEEE
Confidence 334444477789999999887654 4444444432 566766654
No 37
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=20.71 E-value=2.7e+02 Score=18.45 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=21.0
Q ss_pred HHHHHHHhcceeEEEEeccccCChhHHHHHHHHHH
Q 048539 45 ALLNAIEASKISIVIFSKNYASSKWCLDELVKILE 79 (119)
Q Consensus 45 ~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~~~~~ 79 (119)
++.++|+++++.++|+.-+--.+.+. .++...+.
T Consensus 4 ~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~ 37 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVK 37 (141)
T ss_pred HHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHH
Confidence 56778888888888887655444432 14444443
No 38
>KOG4465 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.69 E-value=49 Score=27.37 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=18.6
Q ss_pred CCcccEEEeceeccCCCCcHHhHHhh
Q 048539 9 KGRYDVFLSFRGEDTGDNFTSHLFAA 34 (119)
Q Consensus 9 ~~~~dVFIS~s~~D~~~~f~~~L~~~ 34 (119)
+-++||||-|...|+ |+..++++
T Consensus 517 nlk~dvfii~tdndt---~ageihp~ 539 (598)
T KOG4465|consen 517 NLKADVFIIFTDNDT---FAGEIHPA 539 (598)
T ss_pred CCCccEEEEEecCcc---cccccCHH
Confidence 668999999987774 88877764
No 39
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=20.21 E-value=2.5e+02 Score=17.94 Aligned_cols=67 Identities=13% Similarity=0.241 Sum_probs=36.1
Q ss_pred cccEEEeceeccCCCCcHHhHHhhcc---CCCcccHHHHHHHHHhcceeEE-EEeccccCChhHHHHHHHHHHh
Q 048539 11 RYDVFLSFRGEDTGDNFTSHLFAALP---NRGDEISLALLNAIEASKISIV-IFSKNYASSKWCLDELVKILEC 80 (119)
Q Consensus 11 ~~dVFIS~s~~D~~~~f~~~L~~~L~---~~G~~i~~~i~~aI~~Sr~~Iv-vlS~~y~~S~wC~~El~~~~~~ 80 (119)
..+||++......-..+.+-|...+. +.|.++. ++.+.+++.+..=. -+.++++.| |.+.+..+++.
T Consensus 23 p~Evf~~~~~~Gg~~~~~~ai~rliS~~Lr~G~~~~-~ii~~L~gi~~~~~~~~~~~~~~S--~~D~Ia~~L~~ 93 (95)
T PF12637_consen 23 PFEVFINVGKAGGCSGNLEAIARLISLALRSGVPPE-EIIDQLRGIRCGPSGTVGGSRVTS--CPDAIAKALEE 93 (95)
T ss_pred ceEEEEecCcCCCchHHHHHHHHHHHHHHHcCCCHH-HHHHHhcCCCCCCCCccCCCccCc--HHHHHHHHHHH
Confidence 45599988644321233333333222 5888864 56666665443111 122344445 88888888764
No 40
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=20.07 E-value=1.1e+02 Score=20.23 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=6.2
Q ss_pred cccEEEeceecc
Q 048539 11 RYDVFLSFRGED 22 (119)
Q Consensus 11 ~~dVFIS~s~~D 22 (119)
..||-|-|+..+
T Consensus 67 ~~DVvIDfT~p~ 78 (124)
T PF01113_consen 67 EADVVIDFTNPD 78 (124)
T ss_dssp H-SEEEEES-HH
T ss_pred cCCEEEEcCChH
Confidence 366777666554
Done!