Query 048539
Match_columns 119
No_of_seqs 118 out of 1082
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 18:10:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 5.4E-41 1.8E-45 242.3 5.4 109 8-116 5-126 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 2E-40 6.9E-45 243.7 6.3 108 9-116 33-154 (204)
3 3h16_A TIR protein; bacteria T 100.0 1.6E-32 5.4E-37 193.2 3.6 104 9-113 18-134 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 4.2E-26 1.4E-30 159.8 0.5 94 6-101 5-113 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 1.6E-24 5.5E-29 151.8 1.0 92 8-101 2-111 (149)
6 2j67_A TOLL like receptor 10; 99.9 8.1E-24 2.8E-28 152.5 2.5 92 8-101 32-141 (178)
7 2js7_A Myeloid differentiation 99.9 5.1E-24 1.7E-28 151.1 0.1 87 9-97 14-117 (160)
8 1t3g_A X-linked interleukin-1 99.9 1.1E-22 3.8E-27 144.1 6.3 88 10-97 1-114 (159)
9 3j0a_A TOLL-like receptor 5; m 99.7 2E-18 6.9E-23 146.0 4.1 85 9-95 668-772 (844)
10 1eiw_A Hypothetical protein MT 98.3 9.5E-08 3.3E-12 63.7 0.3 72 10-92 3-74 (111)
11 3hyn_A Putative signal transdu 96.2 0.0069 2.4E-07 43.5 4.8 64 40-106 67-131 (189)
12 1byr_A Protein (endonuclease); 53.3 41 0.0014 21.5 6.7 27 38-64 11-37 (155)
13 1qtn_B Caspase-8; apoptosis, d 38.0 6.6 0.00023 24.5 -0.1 29 9-37 10-47 (95)
14 4hde_A SCO1/SENC family lipopr 37.5 22 0.00074 23.6 2.5 56 37-98 20-79 (170)
15 2yvq_A Carbamoyl-phosphate syn 36.5 17 0.00057 24.1 1.8 21 44-64 86-106 (143)
16 3ec6_A General stress protein 28.7 97 0.0033 19.4 4.6 60 39-118 1-60 (139)
17 2i4r_A V-type ATP synthase sub 26.0 88 0.003 19.5 3.8 25 42-66 41-65 (102)
18 2f62_A Nucleoside 2-deoxyribos 25.8 1.5E+02 0.0053 19.9 6.4 56 26-81 27-98 (161)
19 1sc3_B Interleukin-1 beta conv 25.8 35 0.0012 20.7 1.8 22 15-36 21-42 (88)
20 1lup_A GSMTX2; inhibitor cyste 24.6 3.6 0.00012 20.8 -2.4 13 62-74 17-29 (31)
21 2ql9_B Caspase-7; cysteine pro 23.0 34 0.0012 21.0 1.4 29 9-37 8-45 (97)
22 1egw_A MADS box transcription 21.7 17 0.00058 22.0 -0.3 31 50-80 37-67 (77)
23 2dko_B Caspase-3; low barrier 20.8 40 0.0014 21.1 1.4 29 9-37 14-51 (103)
24 1pyo_B Caspase-2; apoptosis, c 20.6 40 0.0014 21.1 1.4 27 10-36 13-48 (105)
25 3ehd_A Uncharacterized conserv 20.1 2.1E+02 0.0072 19.3 7.2 38 43-81 60-97 (162)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=5.4e-41 Score=242.33 Aligned_cols=109 Identities=47% Similarity=0.768 Sum_probs=92.2
Q ss_pred CCCcccEEEeceeccCCCCcHHhHHhhcc-------------CCCcccHHHHHHHHHhcceeEEEEeccccCChhHHHHH
Q 048539 8 TKGRYDVFLSFRGEDTGDNFTSHLFAALP-------------NRGDEISLALLNAIEASKISIVIFSKNYASSKWCLDEL 74 (119)
Q Consensus 8 ~~~~~dVFIS~s~~D~~~~f~~~L~~~L~-------------~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El 74 (119)
..++|||||||+++|+|++|++||+++|+ .+|+.|.++|.+||++|+++|+|||+||++|.||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 47999999999999998899999999998 57899999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCeEEEEEeeeCCcccccccccHHHHHHHhhc
Q 048539 75 VKILECKNCNGQMVVPVFYHVHPSDVRNQTGSFAKLEKKLKM 116 (119)
Q Consensus 75 ~~~~~~~~~~~~~iiPIf~~v~p~~v~~~~~~~~~~f~~~~~ 116 (119)
..|+++.++++++||||||+|+|++||+|+|.||++|.+++.
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~ 126 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS 126 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHT
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHh
Confidence 999999888889999999999999999999999999999875
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=2e-40 Score=243.75 Aligned_cols=108 Identities=46% Similarity=0.773 Sum_probs=101.8
Q ss_pred CCcccEEEeceeccCCCCcHHhHHhhcc-------------CCCcccHHHHHHHHHhcceeEEEEeccccCChhHHHHHH
Q 048539 9 KGRYDVFLSFRGEDTGDNFTSHLFAALP-------------NRGDEISLALLNAIEASKISIVIFSKNYASSKWCLDELV 75 (119)
Q Consensus 9 ~~~~dVFIS~s~~D~~~~f~~~L~~~L~-------------~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~ 75 (119)
.++|||||||+++|+|++|++||+++|+ .+|+.|.++|.+||++||++|+|||+||++|.||++||.
T Consensus 33 ~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~ 112 (204)
T 3ozi_A 33 SVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELA 112 (204)
T ss_dssp -CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHH
T ss_pred CcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHH
Confidence 7899999999999999899999999997 678999999999999999999999999999999999999
Q ss_pred HHHHhhhc-CCCeEEEEEeeeCCcccccccccHHHHHHHhhc
Q 048539 76 KILECKNC-NGQMVVPVFYHVHPSDVRNQTGSFAKLEKKLKM 116 (119)
Q Consensus 76 ~~~~~~~~-~~~~iiPIf~~v~p~~v~~~~~~~~~~f~~~~~ 116 (119)
.|+++.++ ++++||||||+|+|++||+|+|.||++|.+++.
T Consensus 113 ~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~ 154 (204)
T 3ozi_A 113 EIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154 (204)
T ss_dssp HHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTT
T ss_pred HHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHH
Confidence 99999764 678999999999999999999999999999864
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.97 E-value=1.6e-32 Score=193.21 Aligned_cols=104 Identities=20% Similarity=0.362 Sum_probs=96.7
Q ss_pred CCcccEEEeceeccCCCCcHHhHHhhcc-------------CCCcccHHHHHHHHHhcceeEEEEeccccCChhHHHHHH
Q 048539 9 KGRYDVFLSFRGEDTGDNFTSHLFAALP-------------NRGDEISLALLNAIEASKISIVIFSKNYASSKWCLDELV 75 (119)
Q Consensus 9 ~~~~dVFIS~s~~D~~~~f~~~L~~~L~-------------~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~ 75 (119)
.++|||||||+++| +..|+.+|..+|+ .+|+.+.++|.++|++|+++|+|+|++|+.|.||++||.
T Consensus 18 ~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~ 96 (154)
T 3h16_A 18 APPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELD 96 (154)
T ss_dssp CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHH
T ss_pred CCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHH
Confidence 58999999999999 4579999999997 789999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCeEEEEEeeeCCcccccccccHHHHHHH
Q 048539 76 KILECKNCNGQMVVPVFYHVHPSDVRNQTGSFAKLEKK 113 (119)
Q Consensus 76 ~~~~~~~~~~~~iiPIf~~v~p~~v~~~~~~~~~~f~~ 113 (119)
.++++..+++++||||||+|+|++|+++.|.||++|..
T Consensus 97 ~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~ 134 (154)
T 3h16_A 97 GLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAF 134 (154)
T ss_dssp HHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCE
T ss_pred HHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhh
Confidence 99988766778999999999999999999999987754
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.91 E-value=4.2e-26 Score=159.77 Aligned_cols=94 Identities=17% Similarity=0.301 Sum_probs=78.4
Q ss_pred CCCCCcccEEEeceeccCCCCcHHhHHhhcc---------------CCCcccHHHHHHHHHhcceeEEEEeccccCChhH
Q 048539 6 IATKGRYDVFLSFRGEDTGDNFTSHLFAALP---------------NRGDEISLALLNAIEASKISIVIFSKNYASSKWC 70 (119)
Q Consensus 6 ~~~~~~~dVFIS~s~~D~~~~f~~~L~~~L~---------------~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S~wC 70 (119)
+..+++|||||||+++|. .|+.+|.++|+ .+|..+.++|.++|++||++|+|+|++|++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 334889999999999997 58999999887 5677888899999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEeeeCCcccc
Q 048539 71 LDELVKILECKNCNGQMVVPVFYHVHPSDVR 101 (119)
Q Consensus 71 ~~El~~~~~~~~~~~~~iiPIf~~v~p~~v~ 101 (119)
+.|+..++++...+..+||||||+|+++++.
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp 113 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYP 113 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCC
Confidence 9999999988633344788999999866664
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.88 E-value=1.6e-24 Score=151.84 Aligned_cols=92 Identities=20% Similarity=0.335 Sum_probs=79.8
Q ss_pred CCCcccEEEeceeccCCCCcHHh-HHhhcc---------------CCCcccHHHHHHHHHhcceeEEEEeccccCChhHH
Q 048539 8 TKGRYDVFLSFRGEDTGDNFTSH-LFAALP---------------NRGDEISLALLNAIEASKISIVIFSKNYASSKWCL 71 (119)
Q Consensus 8 ~~~~~dVFIS~s~~D~~~~f~~~-L~~~L~---------------~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~ 71 (119)
.++.|||||||+++|. .|+.+ |.++|+ .+|..+.++|.++|++|+++|+|+|++|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3689999999999997 79997 888887 57889999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hcCCCeEEEEEe-eeCCcccc
Q 048539 72 DELVKILECK-NCNGQMVVPVFY-HVHPSDVR 101 (119)
Q Consensus 72 ~El~~~~~~~-~~~~~~iiPIf~-~v~p~~v~ 101 (119)
.|+..|+++. ++++++||||+| ++.+.++.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 9999988643 456678999999 56665554
No 6
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.88 E-value=8.1e-24 Score=152.52 Aligned_cols=92 Identities=22% Similarity=0.392 Sum_probs=75.7
Q ss_pred CCCcccEEEeceeccCCCCcHHh-HHhhcc---------------CCCcccHHHHHHHHHhcceeEEEEeccccCChhHH
Q 048539 8 TKGRYDVFLSFRGEDTGDNFTSH-LFAALP---------------NRGDEISLALLNAIEASKISIVIFSKNYASSKWCL 71 (119)
Q Consensus 8 ~~~~~dVFIS~s~~D~~~~f~~~-L~~~L~---------------~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~ 71 (119)
.++.|||||||+++|. +|+.+ |.++|+ .+|..+.++|.++|++||++|+|+|++|+.|.||.
T Consensus 32 ~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~ 109 (178)
T 2j67_A 32 RNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCH 109 (178)
T ss_dssp CSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGG
T ss_pred CCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHH
Confidence 3789999999999997 79975 988886 57889999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hcCCCeEEEEEee-eCCcccc
Q 048539 72 DELVKILECK-NCNGQMVVPVFYH-VHPSDVR 101 (119)
Q Consensus 72 ~El~~~~~~~-~~~~~~iiPIf~~-v~p~~v~ 101 (119)
.|+..|+++. ++++++||||||+ +.+.++.
T Consensus 110 ~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp 141 (178)
T 2j67_A 110 YEFYFAHHNLFHENSDHIILILLEPIPFYCIP 141 (178)
T ss_dssp THHHHTTCC-------CEEEEESSCCCGGGSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChHHCC
Confidence 9999998654 4566799999994 5554443
No 7
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.87 E-value=5.1e-24 Score=151.10 Aligned_cols=87 Identities=21% Similarity=0.328 Sum_probs=76.8
Q ss_pred CCcccEEEeceeccCCCCcHHhHHhhcc---------------CCCcccHHHHHHHHH-hcceeEEEEeccccCChhHHH
Q 048539 9 KGRYDVFLSFRGEDTGDNFTSHLFAALP---------------NRGDEISLALLNAIE-ASKISIVIFSKNYASSKWCLD 72 (119)
Q Consensus 9 ~~~~dVFIS~s~~D~~~~f~~~L~~~L~---------------~~G~~i~~~i~~aI~-~Sr~~IvvlS~~y~~S~wC~~ 72 (119)
++.|||||||+++|. .|+.+|.++|+ .+|..+.++|.++|+ +|+++|+|+|++|++|.||..
T Consensus 14 ~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~ 91 (160)
T 2js7_A 14 PERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDF 91 (160)
T ss_dssp TTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHH
T ss_pred CcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHH
Confidence 689999999999996 79999999887 567888889999999 799999999999999999999
Q ss_pred HHHHHHHhh-hcCCCeEEEEEeeeCC
Q 048539 73 ELVKILECK-NCNGQMVVPVFYHVHP 97 (119)
Q Consensus 73 El~~~~~~~-~~~~~~iiPIf~~v~p 97 (119)
|+..|+++. ++++++||||+|+.-+
T Consensus 92 El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 92 QTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHccCCCEEEEEEEcccc
Confidence 999999874 3445789999996543
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.87 E-value=1.1e-22 Score=144.06 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=74.5
Q ss_pred CcccEEEeceeccC---------CCCcHHhHHh-hcc--------------CCCcccHHHHHHHHHhcceeEEEEecccc
Q 048539 10 GRYDVFLSFRGEDT---------GDNFTSHLFA-ALP--------------NRGDEISLALLNAIEASKISIVIFSKNYA 65 (119)
Q Consensus 10 ~~~dVFIS~s~~D~---------~~~f~~~L~~-~L~--------------~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~ 65 (119)
+.|||||||+++|. +..|+.+|.. .|+ .+|..+.++|.++|++||.+|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 2468777665 464 68999999999999999999999999997
Q ss_pred -CChhHHHHHHHHHHhh-hcCCCeEEEEEeeeCC
Q 048539 66 -SSKWCLDELVKILECK-NCNGQMVVPVFYHVHP 97 (119)
Q Consensus 66 -~S~wC~~El~~~~~~~-~~~~~~iiPIf~~v~p 97 (119)
.|.||..|+..++++. ++++++||||+++-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999875 5667899999985333
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.72 E-value=2e-18 Score=146.04 Aligned_cols=85 Identities=19% Similarity=0.336 Sum_probs=73.4
Q ss_pred CCcccEEEeceeccCCCCcH-HhHHhhcc------------------CCCcccHHHHHHHHHhcceeEEEEeccccCChh
Q 048539 9 KGRYDVFLSFRGEDTGDNFT-SHLFAALP------------------NRGDEISLALLNAIEASKISIVIFSKNYASSKW 69 (119)
Q Consensus 9 ~~~~dVFIS~s~~D~~~~f~-~~L~~~L~------------------~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S~w 69 (119)
+++|||||||+++|. +|+ .+|.+.|+ .+|+.+.++|.++|++||++|+|+|++|+.|+|
T Consensus 668 ~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~w 745 (844)
T 3j0a_A 668 MYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGW 745 (844)
T ss_dssp CCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTS
T ss_pred ceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChH
Confidence 679999999999996 455 44554442 689999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-hcCCCeEEEEEeee
Q 048539 70 CLDELVKILECK-NCNGQMVVPVFYHV 95 (119)
Q Consensus 70 C~~El~~~~~~~-~~~~~~iiPIf~~v 95 (119)
|.+|+..|+.+. ++++++||||||+-
T Consensus 746 c~~e~~~a~~~~~~~~~~~~i~i~~~~ 772 (844)
T 3j0a_A 746 CLEAFSYAQGRCLSDLNSALIMVVVGS 772 (844)
T ss_dssp TTHHHHHHHSCCCCSSCTTEEEEESSC
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence 999999998875 56778999999953
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.30 E-value=9.5e-08 Score=63.74 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=53.8
Q ss_pred CcccEEEeceeccCCCCcHHhHHhhccCCCcccHHHHHHHHHhcceeEEEEeccccCChhHHHHHHHHHHhhhcCCCeEE
Q 048539 10 GRYDVFLSFRGEDTGDNFTSHLFAALPNRGDEISLALLNAIEASKISIVIFSKNYASSKWCLDELVKILECKNCNGQMVV 89 (119)
Q Consensus 10 ~~~dVFIS~s~~D~~~~f~~~L~~~L~~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~ii 89 (119)
.+|.+||||+.+| ...+. ...|..+|..+.+ +.|+.|+++|++.++....|+||..|+..+.+. +..|+
T Consensus 3 ~~~~lFISh~~~d-~~~~L---~~~l~~~~f~~~~---~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~----gkpIi 71 (111)
T 1eiw_A 3 AEIRLYITEGEVE-DYRVF---LERLEQSGLEWRP---ATPEDADAVIVLAGLWGTRRDEILGAVDLARKS----SKPII 71 (111)
T ss_dssp CCEEEEECCCCSH-HHHHH---HHHHHHHCSCEEE---CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTT----TCCEE
T ss_pred ceEEEEEecccHh-HHHHH---HHHHhCCCCeeec---CccccCCEEEEEeCCCcCCChHHHHHHHHHHHc----CCCEE
Confidence 5789999999998 32232 2222356666655 789999999999999999999999999877643 34566
Q ss_pred EEE
Q 048539 90 PVF 92 (119)
Q Consensus 90 PIf 92 (119)
-|.
T Consensus 72 gV~ 74 (111)
T 1eiw_A 72 TVR 74 (111)
T ss_dssp EEC
T ss_pred EEE
Confidence 664
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.18 E-value=0.0069 Score=43.51 Aligned_cols=64 Identities=20% Similarity=0.253 Sum_probs=48.8
Q ss_pred cccHHHHHHHHHhcceeEEEEeccccCChhHHHHHHHHHHhhhcCCCeEEEEEeeeC-Cccccccccc
Q 048539 40 DEISLALLNAIEASKISIVIFSKNYASSKWCLDELVKILECKNCNGQMVVPVFYHVH-PSDVRNQTGS 106 (119)
Q Consensus 40 ~~i~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~iiPIf~~v~-p~~v~~~~~~ 106 (119)
..|...|.+.|.+|+.+|+++|++...|.|-..|+..+++. .+..||-|..+-+ .+++..-.|.
T Consensus 67 ~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~---~~~PII~Vy~~~~~~~~i~~~~g~ 131 (189)
T 3hyn_A 67 KTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGT---KGLPVIVIYPDYDKKSDIVDSNGN 131 (189)
T ss_dssp TTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTT---TCCCEEEEETTCCSGGGTBCTTSC
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHh---cCCcEEEEECCccccchhhhcccc
Confidence 45788999999999999999999999999999999998833 3457777765422 3345543343
No 12
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=53.33 E-value=41 Score=21.45 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=21.3
Q ss_pred CCcccHHHHHHHHHhcceeEEEEeccc
Q 048539 38 RGDEISLALLNAIEASKISIVIFSKNY 64 (119)
Q Consensus 38 ~G~~i~~~i~~aI~~Sr~~IvvlS~~y 64 (119)
||..+.+.+.+.|++++..|.+.++.+
T Consensus 11 p~~~~~~~~~~~i~~A~~~I~i~~~~~ 37 (155)
T 1byr_A 11 PEGSARVLVLSAIDSAKTSIRMMAYSF 37 (155)
T ss_dssp TTTHHHHHHHHHHHHCSSEEEEEESSB
T ss_pred CCCcHHHHHHHHHHHHhhEEEEEEEEe
Confidence 555667778888888888888888766
No 13
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=38.00 E-value=6.6 Score=24.46 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=17.9
Q ss_pred CCcccEEEeceecc---------CCCCcHHhHHhhccC
Q 048539 9 KGRYDVFLSFRGED---------TGDNFTSHLFAALPN 37 (119)
Q Consensus 9 ~~~~dVFIS~s~~D---------~~~~f~~~L~~~L~~ 37 (119)
...-|.+++|+..+ ....|+..|.+.|++
T Consensus 10 P~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~ 47 (95)
T 1qtn_B 10 PDEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRE 47 (95)
T ss_dssp CTTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHH
Confidence 44667777776544 234577777777763
No 14
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=37.50 E-value=22 Score=23.60 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=30.3
Q ss_pred CCCcccHHHHHHHHHhcceeEEEEeccccCC-hhHHHHHH---HHHHhhhcCCCeEEEEEeeeCCc
Q 048539 37 NRGDEISLALLNAIEASKISIVIFSKNYASS-KWCLDELV---KILECKNCNGQMVVPVFYHVHPS 98 (119)
Q Consensus 37 ~~G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S-~wC~~El~---~~~~~~~~~~~~iiPIf~~v~p~ 98 (119)
..|+.+.- ...++ ++.|+-|- |..- .||-.++. .+.+..++.+..|..|+..++|.
T Consensus 20 ~~G~~v~l---~d~~G-k~vll~F~--~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~ 79 (170)
T 4hde_A 20 QDGKPFGT---KDLKG-KVWVADFM--FTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPD 79 (170)
T ss_dssp TTSCEEEH---HHHTT-SCEEEEEE--CTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTT
T ss_pred CCCCEEeH---HHhCC-CEEEEEEE--CCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcc
Confidence 45666642 22333 55555553 3332 47865554 44444444455677788888774
No 15
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=36.51 E-value=17 Score=24.09 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=17.1
Q ss_pred HHHHHHHHhcceeEEEEeccc
Q 048539 44 LALLNAIEASKISIVIFSKNY 64 (119)
Q Consensus 44 ~~i~~aI~~Sr~~IvvlS~~y 64 (119)
++|.+.|++-++-+||..|+-
T Consensus 86 ~~i~d~i~~g~i~lVInt~~~ 106 (143)
T 2yvq_A 86 SSIRKLIRDGSIDLVINLPNN 106 (143)
T ss_dssp BCHHHHHHTTSCCEEEECCCC
T ss_pred ccHHHHHHCCCceEEEECCCC
Confidence 468888888888888888865
No 16
>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0
Probab=28.70 E-value=97 Score=19.44 Aligned_cols=60 Identities=8% Similarity=0.078 Sum_probs=36.7
Q ss_pred CcccHHHHHHHHHhcceeEEEEeccccCChhHHHHHHHHHHhhhcCCCeEEEEEeeeCCcccccccccHHHHHHHhhcCC
Q 048539 39 GDEISLALLNAIEASKISIVIFSKNYASSKWCLDELVKILECKNCNGQMVVPVFYHVHPSDVRNQTGSFAKLEKKLKMLP 118 (119)
Q Consensus 39 G~~i~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~~~~~~~~~~~~~iiPIf~~v~p~~v~~~~~~~~~~f~~~~~~~ 118 (119)
|+.+.+++.+-+++++...+-... .+.-.+.|+.|..+...+.-.+..-+.+...++.+|
T Consensus 1 ~m~l~~~~~~~L~~~~~~~LaT~~--------------------dg~P~~~pv~~~~~~~~l~f~t~~~s~k~~~l~~np 60 (139)
T 3ec6_A 1 GMHLKEKITTIIQGQRTGVLSTVR--------------------NDKPHSAFMMFFHEDFVLYVATDRQSKKITDIENNP 60 (139)
T ss_dssp -CCHHHHHHHHHHSCCEEEEEEEE--------------------TTEEEEEEEECEEETTEEEEEEETTCHHHHHHHHCC
T ss_pred CchHHHHHHHHHhcCCEEEEEEec--------------------CCCEEEEEEEEEEeCCEEEEEECCCCHHHHHHHhCC
Confidence 667778888888888876654432 122367777765444455544544566666666665
No 17
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=26.03 E-value=88 Score=19.55 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=18.6
Q ss_pred cHHHHHHHHHhcceeEEEEeccccC
Q 048539 42 ISLALLNAIEASKISIVIFSKNYAS 66 (119)
Q Consensus 42 i~~~i~~aI~~Sr~~IvvlS~~y~~ 66 (119)
+.+.+.+.+++-++.|++++.+.+.
T Consensus 41 ~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 41 IVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 3444555566779999999999876
No 18
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=25.85 E-value=1.5e+02 Score=19.86 Aligned_cols=56 Identities=11% Similarity=0.001 Sum_probs=37.4
Q ss_pred CcHHhHHhhccCCCc--------------ccHHHHHHHHHhcceeEEEEec--cccCChhHHHHHHHHHHhh
Q 048539 26 NFTSHLFAALPNRGD--------------EISLALLNAIEASKISIVIFSK--NYASSKWCLDELVKILECK 81 (119)
Q Consensus 26 ~f~~~L~~~L~~~G~--------------~i~~~i~~aI~~Sr~~IvvlS~--~y~~S~wC~~El~~~~~~~ 81 (119)
.+...+.+.|+..|- .|..+=.++|++|++.|.++.| .-..+.=...|+-.+....
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Alg 98 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN 98 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCC
Confidence 466667766664431 2333447899999999999986 3333445788988877553
No 19
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=25.80 E-value=35 Score=20.74 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=14.2
Q ss_pred EEeceeccCCCCcHHhHHhhcc
Q 048539 15 FLSFRGEDTGDNFTSHLFAALP 36 (119)
Q Consensus 15 FIS~s~~D~~~~f~~~L~~~L~ 36 (119)
|.||++......|+..|.+.|+
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~ 42 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQ 42 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHH
T ss_pred CEeeEcCCCCCHHHHHHHHHHH
Confidence 3445544444568888888886
No 20
>1lup_A GSMTX2; inhibitor cysteine knot, beta-sheet, toxin; NMR {Grammostola rosea} SCOP: g.3.6.2 PDB: 1v7f_A
Probab=24.64 E-value=3.6 Score=20.81 Aligned_cols=13 Identities=15% Similarity=0.588 Sum_probs=10.2
Q ss_pred ccccCChhHHHHH
Q 048539 62 KNYASSKWCLDEL 74 (119)
Q Consensus 62 ~~y~~S~wC~~El 74 (119)
++|+-+.||.++|
T Consensus 17 eg~vC~lWCKy~~ 29 (31)
T 1lup_A 17 EGLVCRLWCKRII 29 (31)
T ss_dssp SSSBCSSBCBCCC
T ss_pred ccchHHHHHHHHh
Confidence 6788889997654
No 21
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=22.98 E-value=34 Score=21.04 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=17.4
Q ss_pred CCcccEEEeceecc---------CCCCcHHhHHhhccC
Q 048539 9 KGRYDVFLSFRGED---------TGDNFTSHLFAALPN 37 (119)
Q Consensus 9 ~~~~dVFIS~s~~D---------~~~~f~~~L~~~L~~ 37 (119)
...-|.+++|+..+ ....|+..|.+.|++
T Consensus 8 P~~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~ 45 (97)
T 2ql9_B 8 PVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEE 45 (97)
T ss_dssp CTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHH
Confidence 44556666665433 334577777777763
No 22
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=21.72 E-value=17 Score=21.95 Aligned_cols=31 Identities=16% Similarity=0.316 Sum_probs=21.2
Q ss_pred HHhcceeEEEEeccccCChhHHHHHHHHHHh
Q 048539 50 IEASKISIVIFSKNYASSKWCLDELVKILEC 80 (119)
Q Consensus 50 I~~Sr~~IvvlS~~y~~S~wC~~El~~~~~~ 80 (119)
+-++.+.++|||++=--..||...+..++++
T Consensus 37 LCdaeV~livfs~~gk~~~~~s~~~~~il~r 67 (77)
T 1egw_A 37 LCDCEIALIIFNSSNKLFQYASTDMDKVLLK 67 (77)
T ss_dssp HTTCEEEEEEECTTCCEEEEESSCHHHHHHH
T ss_pred ccCCeEEEEEECCCCCEeeCCCCCHHHHHHH
Confidence 3578999999999854445554456666555
No 23
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=20.84 E-value=40 Score=21.06 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=17.6
Q ss_pred CCcccEEEeceecc---------CCCCcHHhHHhhccC
Q 048539 9 KGRYDVFLSFRGED---------TGDNFTSHLFAALPN 37 (119)
Q Consensus 9 ~~~~dVFIS~s~~D---------~~~~f~~~L~~~L~~ 37 (119)
...-|.+++|+... ....|+..|.+.|++
T Consensus 14 P~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~ 51 (103)
T 2dko_B 14 PVEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQ 51 (103)
T ss_dssp CTTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHH
Confidence 33556777666443 334577777777763
No 24
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=20.59 E-value=40 Score=21.10 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=16.4
Q ss_pred CcccEEEecee---------ccCCCCcHHhHHhhcc
Q 048539 10 GRYDVFLSFRG---------EDTGDNFTSHLFAALP 36 (119)
Q Consensus 10 ~~~dVFIS~s~---------~D~~~~f~~~L~~~L~ 36 (119)
..-|.+++|+. .+....|+..|.+.|+
T Consensus 13 ~~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~ 48 (105)
T 1pyo_B 13 TRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFS 48 (105)
T ss_dssp SSCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHH
Confidence 34566666554 3333457777777776
No 25
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=20.06 E-value=2.1e+02 Score=19.29 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcceeEEEEeccccCChhHHHHHHHHHHhh
Q 048539 43 SLALLNAIEASKISIVIFSKNYASSKWCLDELVKILECK 81 (119)
Q Consensus 43 ~~~i~~aI~~Sr~~IvvlS~~y~~S~wC~~El~~~~~~~ 81 (119)
-..=.++|++|++.|.++. ....+.....|+-.+....
T Consensus 60 ~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~g 97 (162)
T 3ehd_A 60 ALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAKG 97 (162)
T ss_dssp HHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHCC
Confidence 3344578999999999994 3446788999999887643
Done!