BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048543
         (282 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QZ6|A Chain A, First Crystal Structure Of A Psychrophile Class C Beta-
           Lactamase
          Length = 358

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 137 LGTFSAGGLSLGIAELSVCRGLPGSYYCH 165
           LGT++AGGL L   E S   G   SYY H
Sbjct: 105 LGTYTAGGLPLQFPEESDNTGKMISYYQH 133


>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
           Distinct Roles For Malaria M1- And M17-Family
           Aminopeptidases
          Length = 895

 Score = 28.1 bits (61), Expect = 5.0,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 11/72 (15%)

Query: 115 LTVVVVFEFSVGATLNKGFNRALGTFSAGGL---SLGIAELSVCRGLP--GSYYCHQYFY 169
           L +V V +F+VGA  NKG N     F+A  L        + S  R L   G  Y HQY  
Sbjct: 254 LNLVAVSDFNVGAMENKGLN----IFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTG 309

Query: 170 SR--LASFFLLT 179
           +R  L  +F LT
Sbjct: 310 NRVTLRDWFQLT 321


>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
           Derivative 15
 pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
           Derivative 16
          Length = 891

 Score = 28.1 bits (61), Expect = 5.0,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 11/72 (15%)

Query: 115 LTVVVVFEFSVGATLNKGFNRALGTFSAGGL---SLGIAELSVCRGLP--GSYYCHQYFY 169
           L +V V +F+VGA  NKG N     F+A  L        + S  R L   G  Y HQY  
Sbjct: 255 LNLVAVSDFNVGAMENKGLN----IFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTG 310

Query: 170 SR--LASFFLLT 179
           +R  L  +F LT
Sbjct: 311 NRVTLRDWFQLT 322


>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
           Complexed With The Phosphinate Dipeptide Analog
          Length = 890

 Score = 28.1 bits (61), Expect = 5.0,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 11/72 (15%)

Query: 115 LTVVVVFEFSVGATLNKGFNRALGTFSAGGL---SLGIAELSVCRGLP--GSYYCHQYFY 169
           L +V V +F+VGA  NKG N     F+A  L        + S  R L   G  Y HQY  
Sbjct: 255 LNLVAVSDFNVGAMENKGLN----IFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTG 310

Query: 170 SR--LASFFLLT 179
           +R  L  +F LT
Sbjct: 311 NRVTLRDWFQLT 322


>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
 pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
           Complexed With Bestatin
          Length = 889

 Score = 28.1 bits (61), Expect = 5.0,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 11/72 (15%)

Query: 115 LTVVVVFEFSVGATLNKGFNRALGTFSAGGL---SLGIAELSVCRGLP--GSYYCHQYFY 169
           L +V V +F+VGA  NKG N     F+A  L        + S  R L   G  Y HQY  
Sbjct: 254 LNLVAVSDFNVGAMENKGLN----IFNANSLLASKKNSIDFSYARILTVVGHEYFHQYTG 309

Query: 170 SR--LASFFLLT 179
           +R  L  +F LT
Sbjct: 310 NRVTLRDWFQLT 321


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.140    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,617,668
Number of Sequences: 62578
Number of extensions: 287013
Number of successful extensions: 630
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 9
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)