Query 048543
Match_columns 282
No_of_seqs 207 out of 1187
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 10:28:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11744 ALMT: Aluminium activ 100.0 3.6E-39 7.8E-44 310.6 16.6 178 70-247 1-207 (406)
2 KOG4711 Predicted membrane pro 100.0 3.5E-32 7.5E-37 272.0 6.1 218 52-269 65-319 (625)
3 TIGR01667 YCCS_YHJK integral m 100.0 2.6E-27 5.6E-32 242.5 24.0 189 65-258 368-566 (701)
4 TIGR01666 YCCS hypothetical me 100.0 3.1E-27 6.7E-32 241.7 23.7 203 67-274 368-583 (704)
5 PF04632 FUSC: Fusaric acid re 99.9 9.2E-24 2E-28 213.7 22.2 167 79-251 1-183 (650)
6 PRK10631 p-hydroxybenzoic acid 99.9 5.1E-22 1.1E-26 201.4 23.5 166 74-245 3-193 (652)
7 PRK11427 multidrug efflux syst 99.9 2.3E-20 4.9E-25 189.2 21.2 172 68-244 339-527 (683)
8 COG1289 Predicted membrane pro 99.8 8.3E-18 1.8E-22 172.3 19.1 170 73-247 348-528 (674)
9 PF13515 FUSC_2: Fusaric acid 99.7 3E-16 6.6E-21 127.2 11.9 104 108-213 12-128 (128)
10 PRK11427 multidrug efflux syst 99.5 4.3E-13 9.2E-18 136.5 18.8 161 76-243 26-203 (683)
11 PF06081 DUF939: Bacterial pro 99.5 2.7E-13 5.8E-18 113.8 14.1 128 82-217 6-141 (141)
12 COG4129 Predicted membrane pro 99.5 8.1E-12 1.7E-16 118.3 21.2 149 80-236 10-167 (332)
13 COG1289 Predicted membrane pro 99.4 3E-11 6.6E-16 124.1 18.3 162 76-244 7-186 (674)
14 PF04632 FUSC: Fusaric acid re 98.6 2.4E-06 5.1E-11 87.0 17.6 154 78-236 338-508 (650)
15 PF10337 DUF2422: Protein of u 98.2 0.0002 4.3E-09 70.8 19.0 169 68-236 4-231 (459)
16 TIGR01666 YCCS hypothetical me 97.6 0.0055 1.2E-07 63.9 19.6 159 78-244 6-177 (704)
17 PF12805 FUSC-like: FUSC-like 97.3 0.0083 1.8E-07 55.6 14.1 50 195-244 70-119 (284)
18 TIGR01667 YCCS_YHJK integral m 97.0 0.072 1.6E-06 55.8 19.8 157 78-244 6-177 (701)
19 PRK10631 p-hydroxybenzoic acid 96.0 0.81 1.8E-05 47.6 19.2 136 82-222 355-506 (652)
20 PF11168 DUF2955: Protein of u 95.3 0.41 8.9E-06 40.0 11.9 125 83-215 2-138 (140)
21 COG4129 Predicted membrane pro 84.5 5.7 0.00012 38.1 8.7 30 128-157 5-34 (332)
22 PF12732 YtxH: YtxH-like prote 79.1 6.7 0.00015 28.9 5.7 40 201-241 3-42 (74)
23 PF06081 DUF939: Bacterial pro 77.3 10 0.00022 31.6 6.8 41 110-151 99-139 (141)
24 COG4980 GvpP Gas vesicle prote 55.7 24 0.00052 28.8 4.6 36 200-236 8-43 (115)
25 PRK11677 hypothetical protein; 53.5 43 0.00092 28.0 5.9 30 201-230 8-38 (134)
26 PF04286 DUF445: Protein of un 52.4 11 0.00023 35.3 2.5 21 133-153 344-364 (367)
27 PF14362 DUF4407: Domain of un 47.5 2.3E+02 0.0051 26.1 14.5 82 193-278 80-163 (301)
28 PF13515 FUSC_2: Fusaric acid 47.5 53 0.0011 25.7 5.5 29 191-220 31-59 (128)
29 PF10011 DUF2254: Predicted me 47.3 1.2E+02 0.0027 29.2 8.9 79 130-211 44-136 (371)
30 COG5336 Uncharacterized protei 44.4 49 0.0011 26.9 4.6 35 127-162 44-78 (116)
31 COG2733 Predicted membrane pro 36.8 18 0.00039 35.5 1.3 22 133-154 391-412 (415)
32 COG4980 GvpP Gas vesicle prote 36.1 33 0.00072 28.0 2.6 24 134-157 6-30 (115)
33 PF06295 DUF1043: Protein of u 34.9 1.2E+02 0.0027 24.8 5.9 20 201-220 4-23 (128)
34 PRK11715 inner membrane protei 32.7 1.7E+02 0.0037 29.2 7.5 52 87-139 338-389 (436)
35 PF10883 DUF2681: Protein of u 32.2 75 0.0016 24.7 3.8 74 203-276 5-81 (87)
36 PF05433 Rick_17kDa_Anti: Glyc 30.9 33 0.00071 22.9 1.5 24 126-149 14-37 (42)
37 PF06123 CreD: Inner membrane 29.1 2.3E+02 0.0049 28.3 7.6 34 104-138 349-382 (430)
38 PF10779 XhlA: Haemolysin XhlA 27.1 61 0.0013 23.7 2.5 20 133-152 50-69 (71)
39 PF13272 DUF4063: Protein of u 24.2 3.9E+02 0.0084 21.6 7.4 33 191-224 23-55 (107)
No 1
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=100.00 E-value=3.6e-39 Score=310.57 Aligned_cols=178 Identities=44% Similarity=0.757 Sum_probs=162.3
Q ss_pred HhcccCCchHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhccChhhHHHHHHhhhhHHHHHHHHHHHH
Q 048543 70 YDMGRKDPRKAVFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFEFSVGATLNKGFNRALGTFSAGGLSLGI 149 (282)
Q Consensus 70 w~~~~~dp~~~~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~qps~GaT~~k~~~RilGTllG~~lg~~l 149 (282)
|+++++||+++.|++|+|+|++++++++|..++|.+++.|++||+|||++||+|++|+|+.||+||++||++||++|+++
T Consensus 1 w~~g~~d~rr~~~~lkvglal~lvsl~~~~~~~~~~~~~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~ 80 (406)
T PF11744_consen 1 WKFGKDDPRRVIHSLKVGLALTLVSLLYFVGPLYDGFGQNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGV 80 (406)
T ss_pred CcccccCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhhhcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCch-hHhH------H----HHhc---------chhhHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHH
Q 048543 150 AELSVCRGL-PGSY------Y----CHQY---------FYSRLASFFLLTYCIVLVSGTST-TFFRTAFYRLVLIAVGAG 208 (282)
Q Consensus 150 ~~l~~~~g~-~~~v------f----~~t~---------~~~Y~~~v~~lT~~lV~v~~~~~-~~~~~a~~Ril~i~IG~~ 208 (282)
.+++...|+ ...+ | +++| +|+|++.+|++||++|++++|++ +.+.++..|++.|++|++
T Consensus 81 ~~la~~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~ 160 (406)
T PF11744_consen 81 SWLASLSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVA 160 (406)
T ss_pred HHHHHhcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHH
Confidence 999877665 2111 2 3444 49999999999999999999999 999999999999999999
Q ss_pred HHHHHhhcccCcchhHHHHHHHHHHHHHhhh--------hHHHhhhc
Q 048543 209 ICLVVNVCIYPMWAGEDLHKLVVKFSKASLL--------PWKCVEYE 247 (282)
Q Consensus 209 ial~v~~li~P~~a~~~L~~~va~~l~~~~~--------Yl~~v~~~ 247 (282)
++++++.+|||.|++++||+.+++++++-.+ |+++.+++
T Consensus 161 i~l~vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~ 207 (406)
T PF11744_consen 161 ICLLVSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDE 207 (406)
T ss_pred HHHHHHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhc
Confidence 9999999999999999999999999999333 77766655
No 2
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=99.97 E-value=3.5e-32 Score=272.03 Aligned_cols=218 Identities=42% Similarity=0.703 Sum_probs=190.3
Q ss_pred hhhhhhHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhccChhhHHHH
Q 048543 52 SDGVINFWTNLQNIFIQFYDMGRKDPRKAVFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFEFSVGATLNK 131 (282)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~w~~~~~dp~~~~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~qps~GaT~~k 131 (282)
.++....-.|+.+..++.|+++..||+++.|++|++++++|++.+++..+++.+++.++.|++|||++|+++++|+|+.|
T Consensus 65 ~~k~~~~~~kv~~~~~~~~~~g~~dprrviha~KvglaltL~S~~y~~~~~~~~ig~~~~wai~tvvvv~e~svgatl~k 144 (625)
T KOG4711|consen 65 TDKELELSAKVSKIARNLWEVGKEDPRRVIHAFKVGLALTLVSFLYFMKPLYKGIGVNALWAILTVVVVFEFSVGATLSK 144 (625)
T ss_pred cccccchHHHHHHHHhhhhhcCCCChhhhhhhhhccchhhhhhheeeccccccccchhhhheeeEEEEEEEeccchHHHH
Confidence 35566667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhhcCch-hHhH------H----HHhc--------chhhHHHHHHHHHHHHHHhcCCh-h
Q 048543 132 GFNRALGTFSAGGLSLGIAELSVCRGL-PGSY------Y----CHQY--------FYSRLASFFLLTYCIVLVSGTST-T 191 (282)
Q Consensus 132 ~~~RilGTllG~~lg~~l~~l~~~~g~-~~~v------f----~~t~--------~~~Y~~~v~~lT~~lV~v~~~~~-~ 191 (282)
+++|.+||+.+|.+|+.+.+++...|+ ...+ | .++| +|+|+..+|.+||+++.++++++ +
T Consensus 145 glnr~v~tL~ag~l~l~~~~la~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~y~y~~lIf~ltf~l~~vs~~r~~~ 224 (625)
T KOG4711|consen 145 GLNRAVGTLSAGGLALGIERLAEISGKDNESIFIGITVFIAGAKATYSLFFPYIKAYEYGFLIFILTFCLVEVSGYRSDY 224 (625)
T ss_pred hHHHHHHHhhhhhhhhhhHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhchhhhccchhhhHHHHHhhhheecccchhH
Confidence 999999999999999999988777763 2222 2 2333 78999999999999999999998 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHhhh--------------hHHHhhhccCCCCcccch
Q 048543 192 FFRTAFYRLVLIAVGAGICLVVNVCIYPMWAGEDLHKLVVKFSKASLL--------------PWKCVEYERVPSKILTYQ 257 (282)
Q Consensus 192 ~~~~a~~Ril~i~IG~~ial~v~~li~P~~a~~~L~~~va~~l~~~~~--------------Yl~~v~~~~~~~~~l~y~ 257 (282)
+++++..|++.|.+|..+|++++.|+||.|+|++||+.++++++.... |..|+++...+++.++||
T Consensus 225 ~~~~a~~Rl~~i~~g~~vcliis~f~~PiwAgedlh~l~~~n~~~~a~sleg~~~~~~~~~~~y~~~~~i~~~s~~~~~~ 304 (625)
T KOG4711|consen 225 FLELALQRLLLIVIGGGVCLIISRFIFPIWAGEDLHKLDSKNFKNLASSLEGRKFTASCFNGEYFCVEKIEILSIPTFYK 304 (625)
T ss_pred HHHHHHHHHHHHhhCcceeEEEEEEEeeccchhhhhhhhhhhhhhhhhhhcchhhhhhhhcchheeehhhhhcchhhhhh
Confidence 999999999999999999999999999999999999999999988333 445566778899999998
Q ss_pred hhH---HHhhhHHHH
Q 048543 258 ASE---FLMTQRIVV 269 (282)
Q Consensus 258 ~~~---~~~~q~~~~ 269 (282)
+++ ....++++.
T Consensus 305 s~~~~~~~~Gy~svl 319 (625)
T KOG4711|consen 305 SAAWYPLYNGYWSVL 319 (625)
T ss_pred hcchhhhhcchhHHh
Confidence 531 233555553
No 3
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=99.96 E-value=2.6e-27 Score=242.53 Aligned_cols=189 Identities=15% Similarity=0.131 Sum_probs=152.6
Q ss_pred HHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhccChhhHHHHHHhhhhHHHHHHH
Q 048543 65 IFIQFYDMGRKDPRKAVFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFEFSVGATLNKGFNRALGTFSAGG 144 (282)
Q Consensus 65 ~~~~~w~~~~~dp~~~~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~qps~GaT~~k~~~RilGTllG~~ 144 (282)
...++.+....++..++||+|++++++++..++...+. +||||+++|+++|+||++|+|+.|+.+|++||++|++
T Consensus 368 ~~~~l~~~l~~~S~~fRhAlR~ala~~~a~~i~~~l~l-----~~gyWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl~G~l 442 (701)
T TIGR01667 368 ILPRLKSHLTPESPLFRHAVRLSLVVMLGYAILMGTAL-----HLGYWILLTTLFVCQPNYGATRLRLVQRIIGTVVGLV 442 (701)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCC-----CcchHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 34455555567777899999999999999888876553 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCchhHhH--H---H-Hhc-chhhHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048543 145 LSLGIAELSVCRGLPGSY--Y---C-HQY-FYSRLASFFLLTYCIVLVSGTST-TFFRTAFYRLVLIAVGAGICLVVNVC 216 (282)
Q Consensus 145 lg~~l~~l~~~~g~~~~v--f---~-~t~-~~~Y~~~v~~lT~~lV~v~~~~~-~~~~~a~~Ril~i~IG~~ial~v~~l 216 (282)
+|+++..+.+.+.....+ + + ..+ +.+|++.++++|..+++...... +.++++..|++||+||++++++++++
T Consensus 443 lg~~l~~l~p~~~~~l~l~v~~~~~~~~~~~~~Y~~a~~fiT~~vll~~~l~~~~~~~~a~~Rl~DTliG~~iA~~~~~l 522 (701)
T TIGR01667 443 IGVALHFLIPSLEGQLTLMVITGVAFFAFRSKNYGWATVFITLLVLLCFNLLGLDGEQYILPRLIDTLIGCLIAWGAVSY 522 (701)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988775533211111 1 1 112 68999999999987776654444 66788999999999999999999999
Q ss_pred ccCcchhHHHHHHHHHHHHHhhhhHHHhh--hccCCCCcccchh
Q 048543 217 IYPMWAGEDLHKLVVKFSKASLLPWKCVE--YERVPSKILTYQA 258 (282)
Q Consensus 217 i~P~~a~~~L~~~va~~l~~~~~Yl~~v~--~~~~~~~~l~y~~ 258 (282)
+||.|+++++++.+++.++.+.+|++.+. +...++..+.|+.
T Consensus 523 lwP~w~~~~l~~~~~~al~a~~~yl~~il~~~~~~~~~~~~yr~ 566 (701)
T TIGR01667 523 LWPDWQSRLLRKMLHDALEANQRYLRLILSQYPQGKPDDLAYRI 566 (701)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHH
Confidence 99999999999999999999999999885 4444455566653
No 4
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=99.96 E-value=3.1e-27 Score=241.67 Aligned_cols=203 Identities=15% Similarity=0.136 Sum_probs=160.0
Q ss_pred HHHHhcccCCchHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhccChhhHHHHHHhhhhHHHHHHHHH
Q 048543 67 IQFYDMGRKDPRKAVFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFEFSVGATLNKGFNRALGTFSAGGLS 146 (282)
Q Consensus 67 ~~~w~~~~~dp~~~~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~qps~GaT~~k~~~RilGTllG~~lg 146 (282)
+++.+....|+..++||+|++++++++..++...+. +||||+++|+++|+||++|+|+.|+.+|++||++|+++|
T Consensus 368 ~~l~~~l~~~S~~fRhAlRlalal~~a~~i~~~l~l-----~~gyWi~LTv~~V~qP~~~~T~~R~~~Ri~GTllG~~lg 442 (704)
T TIGR01666 368 ARIFSHFTFESPLFRHAVRLSIVLFLGYAIIQFFGF-----NLGYWILLTTLFVCQPNYSATKVRLRQRIIGTLLGVVIG 442 (704)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCchHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566777899999999999999888876653 799999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCchhHhH--H----HHhc-chhhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 048543 147 LGIAELSVCRGLPGSY--Y----CHQY-FYSRLASFFLLTYCIVLVSGTSTTFFRTAFYRLVLIAVGAGICLVVNVCIYP 219 (282)
Q Consensus 147 ~~l~~l~~~~g~~~~v--f----~~t~-~~~Y~~~v~~lT~~lV~v~~~~~~~~~~a~~Ril~i~IG~~ial~v~~li~P 219 (282)
.++.++.+.......+ + +..+ ..+|+..++++|..+++......+.++++..|++||+||+++++++++++||
T Consensus 443 ~~ll~l~p~~~~~l~liv~~~~l~~~~~~~~Y~~a~~fiT~~vll~~~l~g~~~~~~~~Rl~dTlIG~~iAl~a~~li~P 522 (704)
T TIGR01666 443 SPLLYFNPSLELQLVLVVLTGVLFFAFRSNNYSFATFFITLLVLLCFNVLGEGAAVLLPRLLDTLIGCAIAWAAVSYIWP 522 (704)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9998885543111111 1 1122 7899999888999887765443356688999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHhhhhHHHhh--hccCCCCcccchhh----HHHhhhHHHHHHHHH
Q 048543 220 MWAGEDLHKLVVKFSKASLLPWKCVE--YERVPSKILTYQAS----EFLMTQRIVVIDRLY 274 (282)
Q Consensus 220 ~~a~~~L~~~va~~l~~~~~Yl~~v~--~~~~~~~~l~y~~~----~~~~~q~~~~~~r~~ 274 (282)
.|+++++++.+++.++++.+|++.+. +...++..+.|+.. -...++.+.+++|..
T Consensus 523 ~w~~~~l~~~~~~al~a~~~Yl~~vl~~~~~g~~~~~~yr~aRR~a~~~~a~l~~~~~~m~ 583 (704)
T TIGR01666 523 DWQYLQLDKVSHQALRANAVYLLHIISQYQFGKSDDLKYRIARRNAHNYDAALSTTVSNMN 583 (704)
T ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999985 44455566666432 224555555655543
No 5
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.92 E-value=9.2e-24 Score=213.68 Aligned_cols=167 Identities=22% Similarity=0.234 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhccChhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCch
Q 048543 79 KAVFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFEFSVGATLNKGFNRALGTFSAGGLSLGIAELSVCRGL 158 (282)
Q Consensus 79 ~~~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~qps~GaT~~k~~~RilGTllG~~lg~~l~~l~~~~g~ 158 (282)
++.|++|+++|+.++.++++..++ ++|||+++||++|+||+.|++++|+++|++||++|+++|++++.++.+. +
T Consensus 1 ~~~~alr~~lA~~lAl~ia~~l~l-----~~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~~-p 74 (650)
T PF04632_consen 1 RLRFALRTALAAMLALYIAFWLQL-----PHPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALFPQS-P 74 (650)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCC-----CCcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-H
Confidence 367999999999999999887664 8999999999999999999999999999999999999999998876655 3
Q ss_pred hHhH-------HHHhc-------chhhHHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHHHHHHHHHHHHhhcccCcch
Q 048543 159 PGSY-------YCHQY-------FYSRLASFFLLTYCIVLVSGTST--TFFRTAFYRLVLIAVGAGICLVVNVCIYPMWA 222 (282)
Q Consensus 159 ~~~v-------f~~t~-------~~~Y~~~v~~lT~~lV~v~~~~~--~~~~~a~~Ril~i~IG~~ial~v~~li~P~~a 222 (282)
+..+ +++.| .+.|++.+..+|.++|.+.+..+ +.++++++|+.+|+||++++.+|+.++||.+.
T Consensus 75 ~l~~~~lal~i~~c~~~~~~~~~~~~y~~~lag~T~~iv~~~~~~~p~~~f~~a~~R~~ei~iGi~~a~~v~~l~~P~~~ 154 (650)
T PF04632_consen 75 LLFLLALALWIGLCLYLSLLDRNFRSYAFMLAGYTAAIVALPAVGNPEQVFDLALWRVLEILIGILCATLVSMLFFPQRA 154 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccH
Confidence 4332 11222 68999999999999999887655 78999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhhhHHHhhhccCCC
Q 048543 223 GEDLHKLVVKFSKASLLPWKCVEYERVPS 251 (282)
Q Consensus 223 ~~~L~~~va~~l~~~~~Yl~~v~~~~~~~ 251 (282)
++.+++.+++.++...++++....++.++
T Consensus 155 ~~~l~~~l~~~l~~~~~~~~~~l~~~~~~ 183 (650)
T PF04632_consen 155 RRQLRRRLAQRLADLARWLAALLDGDPDP 183 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999999999999888876554443
No 6
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.90 E-value=5.1e-22 Score=201.45 Aligned_cols=166 Identities=19% Similarity=0.169 Sum_probs=145.4
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhh---------ccChhhHHHHHHhhhhHHHHHHH
Q 048543 74 RKDPRKAVFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVF---------EFSVGATLNKGFNRALGTFSAGG 144 (282)
Q Consensus 74 ~~dp~~~~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~---------qps~GaT~~k~~~RilGTllG~~ 144 (282)
.+++++++|++|+++|+.++..+++..++ ++||||.+||++|+ ||..|++++|+++|++||++|++
T Consensus 3 ~p~~~~~~falk~~lA~~LAL~ia~~l~L-----~~P~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~ 77 (652)
T PRK10631 3 SIANQRLRFAVKLAFAIVLALFVGFHFQL-----ETPRWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCI 77 (652)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCccHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999887654 79999999999999 99999999999999999999999
Q ss_pred HHHHHHHHhhcCchhHhH--------HHHh---c---chhhHHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHHHHHHHH
Q 048543 145 LSLGIAELSVCRGLPGSY--------YCHQ---Y---FYSRLASFFLLTYCIVLVSGTST--TFFRTAFYRLVLIAVGAG 208 (282)
Q Consensus 145 lg~~l~~l~~~~g~~~~v--------f~~t---~---~~~Y~~~v~~lT~~lV~v~~~~~--~~~~~a~~Ril~i~IG~~ 208 (282)
.|+++..++.+. ++... +|.. + ++.|++.+...|.++|.++...+ +.+++++.|+.+|+||++
T Consensus 78 ~~l~l~~~f~~~-p~l~~l~l~lWig~c~~~s~l~r~~~sY~~~LaGyTa~iI~~~~~~~p~~~f~~A~~R~~Ei~iGi~ 156 (652)
T PRK10631 78 AALVIIIATIRA-PLLMILLCCIWAGFCTWISSLVRVENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSEIVIGIV 156 (652)
T ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence 999998876654 34332 2322 1 57899999999999999887655 788999999999999999
Q ss_pred HHHHHhhcccCcchhHHHHHHHHHHHHHhhhhHHHhh
Q 048543 209 ICLVVNVCIYPMWAGEDLHKLVVKFSKASLLPWKCVE 245 (282)
Q Consensus 209 ial~v~~li~P~~a~~~L~~~va~~l~~~~~Yl~~v~ 245 (282)
++.+|+.+++|...++++++.+.+.+....++++...
T Consensus 157 ca~lv~~l~~P~~~~~~l~~~l~~~~~~~~~~~~~~l 193 (652)
T PRK10631 157 CAILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLCI 193 (652)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999887764
No 7
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.86 E-value=2.3e-20 Score=189.15 Aligned_cols=172 Identities=15% Similarity=0.039 Sum_probs=138.7
Q ss_pred HHHhcccCCchHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhccChhhHHHHHHhhhhHHHHHHHHHH
Q 048543 68 QFYDMGRKDPRKAVFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFEFSVGATLNKGFNRALGTFSAGGLSL 147 (282)
Q Consensus 68 ~~w~~~~~dp~~~~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~qps~GaT~~k~~~RilGTllG~~lg~ 147 (282)
-+|.....||..++|++|+.+++.++..++...+ + +++||+++|+++|+||+.|.|.+|+.+|++||++|+++|+
T Consensus 339 ~~~~dA~tNp~~~R~ALRt~lAa~La~~i~~~l~----w-~~pyWamLTvvIVsqP~~GaT~sRa~~RiiGTliGallA~ 413 (683)
T PRK11427 339 SMVADAFTNPDYMRYALKTLLACLICYTFYSGVD----W-EGIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILAL 413 (683)
T ss_pred hhhHHhccCHHHHHHHHHHHHHHHHHHHHHHHcC----C-CccHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666788899999999999998888876654 4 7999999999999999999999999999999999999999
Q ss_pred HHHHHh-hcCchhH-h---H-----HH--Hh--c-chhhHHHHHHHHHHHHHHhc-CCh-hHHHHHHHHHHHHHHHHHHH
Q 048543 148 GIAELS-VCRGLPG-S---Y-----YC--HQ--Y-FYSRLASFFLLTYCIVLVSG-TST-TFFRTAFYRLVLIAVGAGIC 210 (282)
Q Consensus 148 ~l~~l~-~~~g~~~-~---v-----f~--~t--~-~~~Y~~~v~~lT~~lV~v~~-~~~-~~~~~a~~Ril~i~IG~~ia 210 (282)
++..+. +...... . + +. .. . +++|++..+++|+.++.+.. ... .....+.+|+++|++|++++
T Consensus 414 ll~v~l~P~l~~~~~Llllllp~~llg~wv~~~~~R~sYa~~~ag~T~~li~L~~l~~p~~d~~~i~dRvl~tLLGi~iA 493 (683)
T PRK11427 414 LFTLLVMPWLDNIVELLFVLAPIFLLGAWIATSSERSSYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGILIGTVVS 493 (683)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcccCcccchHHHHHHHHHHHHHHHHH
Confidence 987543 2221111 1 1 11 11 1 77899998889988877643 222 23456678999999999999
Q ss_pred HHHhhcccCcchhHHHHHHHHHHHHHhhhhHHHh
Q 048543 211 LVVNVCIYPMWAGEDLHKLVVKFSKASLLPWKCV 244 (282)
Q Consensus 211 l~v~~li~P~~a~~~L~~~va~~l~~~~~Yl~~v 244 (282)
.+++.++||.|.++.+++.+.+.++...+|++..
T Consensus 494 ~la~~lVwP~~~~~~L~~~l~~aLr~la~~l~~~ 527 (683)
T PRK11427 494 AVIYTFVWPESEARTLPQKLAGALGMLSKVLRIP 527 (683)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999864
No 8
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.78 E-value=8.3e-18 Score=172.33 Aligned_cols=170 Identities=18% Similarity=0.122 Sum_probs=139.9
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhccC-hhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 048543 73 GRKDPRKAVFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFEFS-VGATLNKGFNRALGTFSAGGLSLGIAE 151 (282)
Q Consensus 73 ~~~dp~~~~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~qps-~GaT~~k~~~RilGTllG~~lg~~l~~ 151 (282)
.++++...+|++|+++++.++..+....+ + +++||+++|+++|++|+ +|+|.+|+.+|++||++|+++|+++..
T Consensus 348 ~~~~~~alr~a~R~ala~~~~~~~~~~~~----w-~~g~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~~~l~ 422 (674)
T COG1289 348 HRLNSPALRHALRTALALLLGYAFWLALG----W-PHGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGLLVLL 422 (674)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHhc----C-CccHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778889999888888888776655 3 79999999999999999 999999999999999999999999887
Q ss_pred HhhcCch--hHhH----HH--Hhc-chhhHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Q 048543 152 LSVCRGL--PGSY----YC--HQY-FYSRLASFFLLTYCIVLVSGTST-TFFRTAFYRLVLIAVGAGICLVVNVCIYPMW 221 (282)
Q Consensus 152 l~~~~g~--~~~v----f~--~t~-~~~Y~~~v~~lT~~lV~v~~~~~-~~~~~a~~Ril~i~IG~~ial~v~~li~P~~ 221 (282)
+.....+ +..+ +. +.+ ..+|....+++|+.+.+..+... +...+...|++|+++|++|+++++.++||.|
T Consensus 423 ~~~p~~~~~l~~l~~~~~l~~~~~~~~~~~~a~~~i~l~v~~~~~l~~~~~~~~~~~r~~d~~iG~lIa~~~a~~v~~~~ 502 (674)
T COG1289 423 LLLPLIPGLLLLLLLAALLFAAGIRLAKYRLATLGITLLVLFLVGLLGSNGPDYDLPRFLDTLLGSLIALALAFLVWPLW 502 (674)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7443322 1111 11 222 66777777777887777766555 8888999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHhhhc
Q 048543 222 AGEDLHKLVVKFSKASLLPWKCVEYE 247 (282)
Q Consensus 222 a~~~L~~~va~~l~~~~~Yl~~v~~~ 247 (282)
....+++..++.++++.+|+......
T Consensus 503 ~~~~l~~~~~~~l~~~~~~l~~~~~~ 528 (674)
T COG1289 503 RPRRLRRALRRALRALRRDLASALSR 528 (674)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998887543
No 9
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=99.69 E-value=3e-16 Score=127.19 Aligned_cols=104 Identities=27% Similarity=0.283 Sum_probs=87.4
Q ss_pred CCchHHHHHHHHhhccChhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCchhHhH-------HHHhc--chhhHHHHHHH
Q 048543 108 QYSIWAILTVVVVFEFSVGATLNKGFNRALGTFSAGGLSLGIAELSVCRGLPGSY-------YCHQY--FYSRLASFFLL 178 (282)
Q Consensus 108 ~~~~WA~lTvvvV~qps~GaT~~k~~~RilGTllG~~lg~~l~~l~~~~g~~~~v-------f~~t~--~~~Y~~~v~~l 178 (282)
+|++|+++|+++|++|+.++|.+|+.+|++||++|+++|+++..+.+.+ +... ++..+ .++|....+++
T Consensus 12 ~~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 89 (128)
T PF13515_consen 12 PHGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLFPGN--YVLILIVFLLMFLIFYFLSKNYAIAQIFI 89 (128)
T ss_pred CchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 7999999999999999999999999999999999999999998775543 3322 22223 67898888899
Q ss_pred HHHHHHHhcCC---h-hHHHHHHHHHHHHHHHHHHHHHH
Q 048543 179 TYCIVLVSGTS---T-TFFRTAFYRLVLIAVGAGICLVV 213 (282)
Q Consensus 179 T~~lV~v~~~~---~-~~~~~a~~Ril~i~IG~~ial~v 213 (282)
|+.++++.++. + +.++.+.+|+.++++|+++++++
T Consensus 90 t~~~v~~~~~~~~~~~~~~~~~~~R~~~v~iG~~i~~~v 128 (128)
T PF13515_consen 90 TVMVVLLFSLIHPGNGDPWQLALERILDVLIGILIALLV 128 (128)
T ss_pred HHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 99988877652 3 77889999999999999999864
No 10
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.53 E-value=4.3e-13 Score=136.54 Aligned_cols=161 Identities=12% Similarity=-0.016 Sum_probs=128.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhccChhhHHHHHHhhhhHHHHHHHHHHHHHHHhhc
Q 048543 76 DPRKAVFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFEFSVGATLNKGFNRALGTFSAGGLSLGIAELSVC 155 (282)
Q Consensus 76 dp~~~~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~qps~GaT~~k~~~RilGTllG~~lg~~l~~l~~~ 155 (282)
.|.+.-..+|..++.+++.+++...+. ++++|+..||++|+||+.|.|.+|++.|++||++|+.+++++..+..+
T Consensus 26 ~P~r~~~~~r~~~a~~L~l~i~~~l~~-----P~~a~a~~~vfivsqp~~g~t~~kai~r~vgt~lg~~~~vll~~~~v~ 100 (683)
T PRK11427 26 RPGRVPQTLQLWVGCLLVILISMTFEI-----PFLALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSYG 100 (683)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355555669999999999888877654 799999999999999999999999999999999999999999877655
Q ss_pred CchhHhH------HHHhc-----chhhHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHH-----HHHHHHHHHHHhhccc
Q 048543 156 RGLPGSY------YCHQY-----FYSRLASFFLLTYCIVLVSGTST-TFFRTAFYRLVL-----IAVGAGICLVVNVCIY 218 (282)
Q Consensus 156 ~g~~~~v------f~~t~-----~~~Y~~~v~~lT~~lV~v~~~~~-~~~~~a~~Ril~-----i~IG~~ial~v~~li~ 218 (282)
.+.+..+ +++.| +.+|.+++..+|. ++.. ++.+ ....-+..|..+ +.+|++++.+||.++|
T Consensus 101 ~P~l~~l~ialw~~~~lyl~r~~rl~yvf~lag~ta-ii~~-~f~~v~~~~E~~~R~~e~~w~~i~~gi~ca~lV~~l~~ 178 (683)
T PRK11427 101 YPLIRLIIAGPILMGCMFLMRTHRLGLVFFAVAIVA-IYGQ-TFPAMLDYPEVVVRLTLWCIVVGLYPTLLMTLIGVLWF 178 (683)
T ss_pred chHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH-HHHh-hcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHhC
Confidence 4322221 23344 5599999988884 4411 2222 222233889988 9999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHhhhhHHH
Q 048543 219 PMWAGEDLHKLVVKFSKASLLPWKC 243 (282)
Q Consensus 219 P~~a~~~L~~~va~~l~~~~~Yl~~ 243 (282)
|..-++.++..+.+.++..++++..
T Consensus 179 P~~~~~~l~~~l~~~l~~a~~~l~~ 203 (683)
T PRK11427 179 PSRAINQMHQALNDRLDDAISHLTD 203 (683)
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998887655
No 11
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=99.52 E-value=2.7e-13 Score=113.79 Aligned_cols=128 Identities=23% Similarity=0.301 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhccChhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCchhHh
Q 048543 82 FAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFEFSVGATLNKGFNRALGTFSAGGLSLGIAELSVCRGLPGS 161 (282)
Q Consensus 82 ~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~qps~GaT~~k~~~RilGTllG~~lg~~l~~l~~~~g~~~~ 161 (282)
..+|+++|.+++..++.+.+. ++++++.+++++.+|||...|++.+++|+.|+++|+++|+++..+.... ++..
T Consensus 6 r~iKtaiA~~la~~ia~~l~~-----~~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~-~~~~ 79 (141)
T PF06081_consen 6 RTIKTAIAAFLAILIAQLLGL-----QYPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLILGYN-PLSI 79 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHCC-----CchHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc-HHHH
Confidence 568999999999999876643 6899999999999999999999999999999999999999998775433 3322
Q ss_pred H---H-----HHhcchhhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048543 162 Y---Y-----CHQYFYSRLASFFLLTYCIVLVSGTSTTFFRTAFYRLVLIAVGAGICLVVNVCI 217 (282)
Q Consensus 162 v---f-----~~t~~~~Y~~~v~~lT~~lV~v~~~~~~~~~~a~~Ril~i~IG~~ial~v~~li 217 (282)
. + +..++.+-+.....++...++.+ .++.+..+..|++++++|+++++++|+++
T Consensus 80 ~l~v~i~i~~~~~l~~~~~~~~a~v~~~~i~~~--~~~~~~~~~~r~l~t~iG~~va~lVN~~~ 141 (141)
T PF06081_consen 80 GLAVIITIPICNWLKLGEGIIVAAVTFVHILLS--GSDSFSYALNRVLLTLIGIGVALLVNLLM 141 (141)
T ss_pred HHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHc--CCccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1 1 12225555555555555444432 23333449999999999999999999864
No 12
>COG4129 Predicted membrane protein [Function unknown]
Probab=99.47 E-value=8.1e-12 Score=118.33 Aligned_cols=149 Identities=17% Similarity=0.134 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhccChhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCchh
Q 048543 80 AVFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFEFSVGATLNKGFNRALGTFSAGGLSLGIAELSVCRGLP 159 (282)
Q Consensus 80 ~~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~qps~GaT~~k~~~RilGTllG~~lg~~l~~l~~~~g~~ 159 (282)
....+|+|+|.+++.+++.+.++ +.+.-|.+|+++.++||...++.++++|+.|+.+|+++|.++..++... ++
T Consensus 10 g~RtlKt~ia~~La~~ia~~l~~-----~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~-~~ 83 (332)
T COG4129 10 GARTLKTGLAAGLALLIAHLLGL-----PQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQN-PI 83 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-----CchHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc-HH
Confidence 45679999999999999987654 6888999999999999999999999999999999999999998886533 44
Q ss_pred Hh-H---H----HHhcchhhHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhcccCcc-hhHHHHHHH
Q 048543 160 GS-Y---Y----CHQYFYSRLASFFLLTYCIVLVSGTSTTFFRTAFYRLVLIAVGAGICLVVNVCIYPMW-AGEDLHKLV 230 (282)
Q Consensus 160 ~~-v---f----~~t~~~~Y~~~v~~lT~~lV~v~~~~~~~~~~a~~Ril~i~IG~~ial~v~~li~P~~-a~~~L~~~v 230 (282)
.. + + +..+...-+.....++...+++....+.++... |+++++||+++++++|.++.|.- +-+..++.+
T Consensus 84 ~~~v~~~i~i~~~~~~~~~~g~~~~~~~~~~ii~~~~~~~~~~~~--r~l~~~vG~~~a~lvn~~~~~~~~~~~~~~~kv 161 (332)
T COG4129 84 AFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAAMIPLFLIFN--RFLLVFVGVGVAFLVNLVMPPPDYELKLYRAKV 161 (332)
T ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcccchhHHHH--HHHHHHHHHHHHHHHhhhcCCchHHHHHHHHHH
Confidence 32 1 2 122245554443333333333333332333333 99999999999999999888765 444444444
Q ss_pred HHHHHH
Q 048543 231 VKFSKA 236 (282)
Q Consensus 231 a~~l~~ 236 (282)
...++.
T Consensus 162 ~~~~~~ 167 (332)
T COG4129 162 EAILAS 167 (332)
T ss_pred HHHHHH
Confidence 444444
No 13
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.36 E-value=3e-11 Score=124.12 Aligned_cols=162 Identities=21% Similarity=0.162 Sum_probs=130.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhccChhhHHHHHHhhhhHHHHHHHHHHHHHHHhhc
Q 048543 76 DPRKAVFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFEFSVGATLNKGFNRALGTFSAGGLSLGIAELSVC 155 (282)
Q Consensus 76 dp~~~~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~qps~GaT~~k~~~RilGTllG~~lg~~l~~l~~~ 155 (282)
...+++|++|+.+++.++..++|..+. ++++|+++|+.+|++|+.|+.+.|++.|++||++|..++.++..+..+
T Consensus 7 ~~~~~~~~lr~~~a~~la~~~~~~~~l-----~~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~~~ 81 (674)
T COG1289 7 TNADWRYALRTFLAACLALALAFLLGL-----PQPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALLAQ 81 (674)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCC-----CCccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345799999999999999999988764 799999999999999999999999999999999999999999876544
Q ss_pred CchhHhH--------HHHhc------chhhHHHHHHHHHHHHHHhc--CCh--hHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 048543 156 RGLPGSY--------YCHQY------FYSRLASFFLLTYCIVLVSG--TST--TFFRTAFYRLVLIAVGAGICLVVNVCI 217 (282)
Q Consensus 156 ~g~~~~v--------f~~t~------~~~Y~~~v~~lT~~lV~v~~--~~~--~~~~~a~~Ril~i~IG~~ial~v~~li 217 (282)
. ++..+ +|..+ ...|++.+.+.|..++. .. ... ..+..+++|+.++++|+.+.-.+....
T Consensus 82 ~-p~~f~~~~~~~~~l~~~~~~~~~~~~~~a~~la~yT~~~~~-~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~ 159 (674)
T COG1289 82 E-PWLFLLLLTLWLGLCTAIGSLYRTIASYAFVLAGYTALIIG-PAPAIPEPELLFDGAVWRVVEILLGILCAPVVPLLE 159 (674)
T ss_pred C-cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhc-cccccccHHHHHHHHHHHHHHHHHHHHHhccchHhh
Confidence 3 24332 23222 67888888888988887 22 222 478899999999999999999999998
Q ss_pred cCcchhHHHHHHHHHHHHHhhhhHHHh
Q 048543 218 YPMWAGEDLHKLVVKFSKASLLPWKCV 244 (282)
Q Consensus 218 ~P~~a~~~L~~~va~~l~~~~~Yl~~v 244 (282)
+|...++.|.+.+.......-.|....
T Consensus 160 ~~~~~~~~L~~~l~~~~~~~~~~~~~~ 186 (674)
T COG1289 160 SPSRLYQALANYLEAKSRLFAQLLLAA 186 (674)
T ss_pred hHHHHHHHHHHHHHHHHhccchhhhhh
Confidence 999998888888877766644444433
No 14
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=98.59 E-value=2.4e-06 Score=86.99 Aligned_cols=154 Identities=14% Similarity=0.018 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhh--ccChhhHHHHHHhhhhHHHHHHHHHHHHHHH-hh
Q 048543 78 RKAVFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVF--EFSVGATLNKGFNRALGTFSAGGLSLGIAEL-SV 154 (282)
Q Consensus 78 ~~~~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~--qps~GaT~~k~~~RilGTllG~~lg~~l~~l-~~ 154 (282)
..+.+++|.++++.+++++.... ++ +.+.-+++++.++. -.+.+....+...++.|+++|+++|+++..+ .+
T Consensus 338 ~A~~~alra~la~~~~~l~Wi~t----~W-~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP 412 (650)
T PF04632_consen 338 LALRNALRAFLAILIAGLFWIAT----GW-PSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLP 412 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc----CC-ChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34566667766666666665444 44 56777777766665 6788899999999999999999999987653 23
Q ss_pred cCchhHhH--------HHHhc-----chhhHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 048543 155 CRGLPGSY--------YCHQY-----FYSRLASFFLLTYCIVLVSGTST-TFFRTAFYRLVLIAVGAGICLVVNVCIYPM 220 (282)
Q Consensus 155 ~~g~~~~v--------f~~t~-----~~~Y~~~v~~lT~~lV~v~~~~~-~~~~~a~~Ril~i~IG~~ial~v~~li~P~ 220 (282)
+...+... +...+ ++.|....+.+.|.+.+..++.. -.+....++.+-+++|++++.++..+++|.
T Consensus 413 ~~~~f~~L~l~l~~~l~~~~~~~~~p~~~~~g~~~~v~f~~~~~~~n~~~~d~~~f~n~~la~l~G~~~a~l~~~li~p~ 492 (650)
T PF04632_consen 413 HLDGFPLLALVLAPFLFLGGLLMARPRTAYIGLGFAVFFLLLLGPGNPYSYDFATFLNRALAILLGIVIAALVFRLIRPF 492 (650)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 22222221 11222 56665556666666555455544 455678999999999999999999999998
Q ss_pred chhHHHHHHHHHHHHH
Q 048543 221 WAGEDLHKLVVKFSKA 236 (282)
Q Consensus 221 ~a~~~L~~~va~~l~~ 236 (282)
......+...+...++
T Consensus 493 ~~~~~~rrl~~~~~~~ 508 (650)
T PF04632_consen 493 SPEWRRRRLLRALRRD 508 (650)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 7766665555555444
No 15
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=98.16 E-value=0.0002 Score=70.84 Aligned_cols=169 Identities=17% Similarity=0.117 Sum_probs=103.4
Q ss_pred HHHhcccCCchHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhc-cChhhHHHHHHhhhhHHHHHHHHH
Q 048543 68 QFYDMGRKDPRKAVFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFE-FSVGATLNKGFNRALGTFSAGGLS 146 (282)
Q Consensus 68 ~~w~~~~~dp~~~~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~q-ps~GaT~~k~~~RilGTllG~~lg 146 (282)
..|-.-..|.+.++--+|-+++..++.++....+...-+|+.+|.+++..+++.- -..|..+...+.=++|+.+|...+
T Consensus 4 p~W~~~~ld~~~~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~~~p~~~~~~~~~~~~~~~~g~~~g~~~~ 83 (459)
T PF10337_consen 4 PAWLLDHLDRRSLKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVIVPPGRPRGKFLEAMILLLLGVCLGWAWG 83 (459)
T ss_pred chhhhcCCCHHHHHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566556688888888999999999999887766555566788888766555432 246777777777777777777777
Q ss_pred HHHHHHhhc---------------------Cc--hhHh-----------------H---H--HHhc-----c--hh-hHH
Q 048543 147 LGIAELSVC---------------------RG--LPGS-----------------Y---Y--CHQY-----F--YS-RLA 173 (282)
Q Consensus 147 ~~l~~l~~~---------------------~g--~~~~-----------------v---f--~~t~-----~--~~-Y~~ 173 (282)
++..+++.. ++ +... + | +..| + +. +.+
T Consensus 84 ~l~~~~a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a~~saV~av~l~~~i~~~~~lRa~~p~~~~ 163 (459)
T PF10337_consen 84 LLAMYIAVAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDARASAVFAVFLFVFIYFHGWLRAKNPKLNF 163 (459)
T ss_pred HHHHHHHHHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecchHHHHHHHHHHHHHHHHHHHHHhCcchHH
Confidence 666555321 11 0000 0 1 1111 1 11 222
Q ss_pred H-HH-HHHHHHHHHhcC--Ch-hHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHH
Q 048543 174 S-FF-LLTYCIVLVSGT--ST-TFFRTAFYRLVLIAVGAGICLVVNVCIYPMWAGEDLHKLVVKFSKA 236 (282)
Q Consensus 174 ~-v~-~lT~~lV~v~~~--~~-~~~~~a~~Ril~i~IG~~ial~v~~li~P~~a~~~L~~~va~~l~~ 236 (282)
. ++ .+...+.+..+. ++ ....++..=+.-.++|+++++++|.+|||...+..+.+.+.+.+..
T Consensus 164 ~~I~~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~ 231 (459)
T PF10337_consen 164 PVIFGSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRL 231 (459)
T ss_pred HHHHHHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHH
Confidence 2 11 112212222221 22 2334444445678899999999999999999997777776666655
No 16
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=97.63 E-value=0.0055 Score=63.93 Aligned_cols=159 Identities=11% Similarity=0.043 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhccChhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCc
Q 048543 78 RKAVFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFEFSVGATLNKGFNRALGTFSAGGLSLGIAELSVCRG 157 (282)
Q Consensus 78 ~~~~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~qps~GaT~~k~~~RilGTllG~~lg~~l~~l~~~~g 157 (282)
.++.+++|+.+++..+.++.+..+. . +-+.=+.+.++...-.+....+..-+++++-|++...++.....+....
T Consensus 6 ~~~~~~lri~ia~~~~~~~~~~~~~---~-~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~- 80 (704)
T TIGR01666 6 AKVIYTIPIFIALNGAAVGIWFFDI---S-SQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGK- 80 (704)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCc---h-hHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 4688999999999888777665441 1 2344456777766667777888888888889998888888877764433
Q ss_pred hhHhH-------HHHhc----chhhHHHHHHHHHHHHH--HhcCChhHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhH
Q 048543 158 LPGSY-------YCHQY----FYSRLASFFLLTYCIVL--VSGTSTTFFRTAFYRLVLIAVGAGICLVVNVCIYPMWAGE 224 (282)
Q Consensus 158 ~~~~v-------f~~t~----~~~Y~~~v~~lT~~lV~--v~~~~~~~~~~a~~Ril~i~IG~~ial~v~~li~P~~a~~ 224 (282)
+|..+ |+++. -..|+ .+.+.|..+.. +.+... ....+...+.+++|++.-.+.+.+.++.|..+
T Consensus 81 p~lf~~~l~~~tf~~~mlga~G~Rya-~Iaf~tLliaiytmlg~~~--~~~w~~~pllll~GalwY~llsl~~~~l~p~r 157 (704)
T TIGR01666 81 PWLFAVGLTVSTFGFIMLGAVGQRYA-TIAFGSLLVALYTMLGYIE--VNVWFIQPVMLLCGTLWYSVVTLIVHLFFPNR 157 (704)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34332 22222 12222 22222222111 112211 11235578889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhHHHh
Q 048543 225 DLHKLVVKFSKASLLPWKCV 244 (282)
Q Consensus 225 ~L~~~va~~l~~~~~Yl~~v 244 (282)
.+++.+++.+.+-.+|++.-
T Consensus 158 p~q~~LA~~y~~La~yL~ak 177 (704)
T TIGR01666 158 PVQENLAKAFCQLAEYLETK 177 (704)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988998875
No 17
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=97.26 E-value=0.0083 Score=55.61 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHhhhhHHHh
Q 048543 195 TAFYRLVLIAVGAGICLVVNVCIYPMWAGEDLHKLVVKFSKASLLPWKCV 244 (282)
Q Consensus 195 ~a~~Ril~i~IG~~ial~v~~li~P~~a~~~L~~~va~~l~~~~~Yl~~v 244 (282)
-++.+.+.+++|+++.++.+.+.||.|..+..++.+++.+..-.+|++.-
T Consensus 70 ~~~~~~~l~~~Gglwy~~lsl~~~~l~p~r~~rqaLa~~y~~lA~yl~~k 119 (284)
T PF12805_consen 70 EALEHALLFLAGGLWYLLLSLLWWPLRPYRPVRQALAECYRALADYLRAK 119 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999885
No 18
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=97.05 E-value=0.072 Score=55.76 Aligned_cols=157 Identities=11% Similarity=0.054 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhccChhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCc
Q 048543 78 RKAVFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFEFSVGATLNKGFNRALGTFSAGGLSLGIAELSVCRG 157 (282)
Q Consensus 78 ~~~~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~qps~GaT~~k~~~RilGTllG~~lg~~l~~l~~~~g 157 (282)
.++.+++|+.+++..+.++.+..+. . ..+.=+.+.++..--.+....+.-=+++++-|++...++....++....
T Consensus 6 ~~~~~~l~v~ia~~~~~~~~~~~g~---~-~~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~- 80 (701)
T TIGR01667 6 QKLVYCLPVFIALMGAELRIWWFGL---L-FLLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPK- 80 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC---c-cHHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 4678999999999888776655432 1 2344455666655556666777666777777777777777766654333
Q ss_pred hhHhH-------HHHhc----chhhHHH----HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhcccCcch
Q 048543 158 LPGSY-------YCHQY----FYSRLAS----FFLLTYCIVLVSGTSTTFFRTAFYRLVLIAVGAGICLVVNVCIYPMWA 222 (282)
Q Consensus 158 ~~~~v-------f~~t~----~~~Y~~~----v~~lT~~lV~v~~~~~~~~~~a~~Ril~i~IG~~ial~v~~li~P~~a 222 (282)
+|..+ |+++. -..|+.. +.+..|.+ .+... ...-+.--+.+++|++.-.+.+.+.++.|.
T Consensus 81 p~~~~~~l~~~tf~~~mlga~G~r~~~I~f~~L~~aiytm---l~~~~--~~~w~~~pllll~GalwY~l~sll~~~l~p 155 (701)
T TIGR01667 81 PWLFPFLLTLLTFGFILLGALGQRYATIAFASLLAAIYTM---LGAGE--VPVWFIEPLLILAGTLWYGLLTLIWFLLFP 155 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHH---cCccc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34332 22222 2233211 11112221 12222 111233566788899999999999888888
Q ss_pred hHHHHHHHHHHHHHhhhhHHHh
Q 048543 223 GEDLHKLVVKFSKASLLPWKCV 244 (282)
Q Consensus 223 ~~~L~~~va~~l~~~~~Yl~~v 244 (282)
.+..++.+++.+.+-.+|++.-
T Consensus 156 ~rp~q~~La~~y~~La~yL~aK 177 (701)
T TIGR01667 156 NQPLQESLSRLYRELAEYLEAK 177 (701)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999988998775
No 19
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=95.98 E-value=0.81 Score=47.63 Aligned_cols=136 Identities=14% Similarity=-0.061 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCchHHH-HHHHHhhcc-ChhhHHHHHHhhhhHHHHHHHHHHHHHHH-hhcC-c
Q 048543 82 FAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAI-LTVVVVFEF-SVGATLNKGFNRALGTFSAGGLSLGIAEL-SVCR-G 157 (282)
Q Consensus 82 ~alK~aLalala~ll~~~~~~~~~~~~~~~WA~-lTvvvV~qp-s~GaT~~k~~~RilGTllG~~lg~~l~~l-~~~~-g 157 (282)
-++|.++++.+++.+... .++ +.|.=++ ++++++.-. +...-..-+.+=+.||++|..+|.++... .+.. +
T Consensus 355 ~glRa~~ai~~~~~fWI~----TgW-~~Ga~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~a~l~~f~vLP~i~~ 429 (652)
T PRK10631 355 NGWRTTLATALGTLFWLW----TGW-TSGSGAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPLGALYFMVIIPNTQQ 429 (652)
T ss_pred HHHHHHHHHHHHHHHHHH----ccC-chHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 345666666666555433 344 3444444 333333221 22223444566678999999999887543 2221 1
Q ss_pred hhHhH------H--H-Hhc--chhhHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHHHHHhhcccCcch
Q 048543 158 LPGSY------Y--C-HQY--FYSRLASFFLLTYCIVLVSGTST-TFFRTAFYRLVLIAVGAGICLVVNVCIYPMWA 222 (282)
Q Consensus 158 ~~~~v------f--~-~t~--~~~Y~~~v~~lT~~lV~v~~~~~-~~~~~a~~Ril~i~IG~~ial~v~~li~P~~a 222 (282)
.+... + + ... +..++..-+.+.++..+...... -.+...++--+-.++|+++++++..++-|.-.
T Consensus 430 ~f~lL~laLap~~~~~g~~~~~~~~~~lg~~i~f~~~l~l~n~~~~d~~~FlN~alA~v~Gi~~A~l~f~lirp~~~ 506 (652)
T PRK10631 430 SMLLLCISLGVLGFFIGIEVQKRRLGSLGALASTINILVLDNPMTFHFSQFLDSALGQIVGCFLALIVILLVRDNSR 506 (652)
T ss_pred cHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 12111 1 1 122 34555333344444333333332 33455677788899999999999988877633
No 20
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=95.34 E-value=0.41 Score=40.04 Aligned_cols=125 Identities=10% Similarity=0.019 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhccChhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCchhHh-
Q 048543 83 AAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFEFSVGATLNKGFNRALGTFSAGGLSLGIAELSVCRGLPGS- 161 (282)
Q Consensus 83 alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~qps~GaT~~k~~~RilGTllG~~lg~~l~~l~~~~g~~~~- 161 (282)
++|.+++.+++..+++..++ +.|+-+.+-.++++.+.---+.+...+=++.+++-+..+..+..+..+.+ ...
T Consensus 2 ~LRia~g~~l~l~~~~~~~~-----~~p~~~pvf~~~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~ll~~~P-~~~~ 75 (140)
T PF11168_consen 2 ALRIAFGVTLGLFLSKLFGW-----PLPFFAPVFPAILLGMVPPPPLKMLLQLLLVALLTALEGLLLSGLLQDYP-VVML 75 (140)
T ss_pred eeehhHHHHHHHHHHHHHCC-----CchHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHH
Confidence 47888888888888877664 68888988888877666667778888888888888888888877654432 222
Q ss_pred --H---HHHhc-----chhhHHH-HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 048543 162 --Y---YCHQY-----FYSRLAS-FFLLTYCIVLVSGTSTTFFRTAFYRLVLIAVGAGICLVVNV 215 (282)
Q Consensus 162 --v---f~~t~-----~~~Y~~~-v~~lT~~lV~v~~~~~~~~~~a~~Ril~i~IG~~ial~v~~ 215 (282)
+ ++..| +-++.+. ...+...++...+. .....+.++......+.+++.++.+
T Consensus 76 l~v~l~~~~~f~~~~~~~~~l~~~~~lv~~~ii~~f~~--~~~~~~~~l~~~l~~~~~iav~i~~ 138 (140)
T PF11168_consen 76 LLVFLLFFWSFYRMSRGPKFLFGTMLLVGLSIIPVFAS--YNTADAEDLILSLVLAILIAVLIAA 138 (140)
T ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHHHHHHHHHHHHHH
Confidence 1 22222 2233332 22222222222221 1224556777777888888777765
No 21
>COG4129 Predicted membrane protein [Function unknown]
Probab=84.51 E-value=5.7 Score=38.11 Aligned_cols=30 Identities=37% Similarity=0.176 Sum_probs=24.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhcCc
Q 048543 128 TLNKGFNRALGTFSAGGLSLGIAELSVCRG 157 (282)
Q Consensus 128 T~~k~~~RilGTllG~~lg~~l~~l~~~~g 157 (282)
-..|...|++=|.+|+.+++.+..+...+.
T Consensus 5 ~~~~ig~RtlKt~ia~~La~~ia~~l~~~~ 34 (332)
T COG4129 5 RMRKIGARTLKTGLAAGLALLIAHLLGLPQ 34 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 356788999999999999999988765553
No 22
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=79.12 E-value=6.7 Score=28.92 Aligned_cols=40 Identities=10% Similarity=0.049 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHhhhhH
Q 048543 201 VLIAVGAGICLVVNVCIYPMWAGEDLHKLVVKFSKASLLPW 241 (282)
Q Consensus 201 l~i~IG~~ial~v~~li~P~~a~~~L~~~va~~l~~~~~Yl 241 (282)
.-.++|++++.++.+++-|. .++++++.+.+..+...+..
T Consensus 3 ~g~l~Ga~~Ga~~glL~aP~-sG~e~R~~l~~~~~~~~~~~ 42 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLFAPK-SGKETREKLKDKAEDLKDKA 42 (74)
T ss_pred HHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999995 78889999998888755543
No 23
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=77.34 E-value=10 Score=31.61 Aligned_cols=41 Identities=24% Similarity=0.164 Sum_probs=29.4
Q ss_pred chHHHHHHHHhhccChhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 048543 110 SIWAILTVVVVFEFSVGATLNKGFNRALGTFSAGGLSLGIAE 151 (282)
Q Consensus 110 ~~WA~lTvvvV~qps~GaT~~k~~~RilGTllG~~lg~~l~~ 151 (282)
-..+.++++.++......... ..+|++=|++|..+|+++-.
T Consensus 99 ~~~a~v~~~~i~~~~~~~~~~-~~~r~l~t~iG~~va~lVN~ 139 (141)
T PF06081_consen 99 IIVAAVTFVHILLSGSDSFSY-ALNRVLLTLIGIGVALLVNL 139 (141)
T ss_pred ehHHHHHHHHHHHcCCccHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345666666666554444444 99999999999999998743
No 24
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=55.67 E-value=24 Score=28.83 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHH
Q 048543 200 LVLIAVGAGICLVVNVCIYPMWAGEDLHKLVVKFSKA 236 (282)
Q Consensus 200 il~i~IG~~ial~v~~li~P~~a~~~L~~~va~~l~~ 236 (282)
+.-+++|++|+.++..++-|. .+.++++.+.+..++
T Consensus 8 l~G~liGgiiGa~aaLL~AP~-sGkelR~~~K~~~~~ 43 (115)
T COG4980 8 LFGILIGGIIGAAAALLFAPK-SGKELRKKLKKSGDA 43 (115)
T ss_pred HHHHHHHHHHHHHHHHHhCCc-ccHHHHHHHHHHHHH
Confidence 456889999999999888886 678888777776666
No 25
>PRK11677 hypothetical protein; Provisional
Probab=53.47 E-value=43 Score=28.04 Aligned_cols=30 Identities=17% Similarity=-0.008 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhhcccCcc-hhHHHHHHH
Q 048543 201 VLIAVGAGICLVVNVCIYPMW-AGEDLHKLV 230 (282)
Q Consensus 201 l~i~IG~~ial~v~~li~P~~-a~~~L~~~v 230 (282)
+..+||++|++++..+.-|.. ...+|.+.+
T Consensus 8 i~livG~iiG~~~~R~~~~~~~~q~~le~eL 38 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNRKLRQQQALQYEL 38 (134)
T ss_pred HHHHHHHHHHHHHHhhccchhhHHHHHHHHH
Confidence 667889999999998776663 333344433
No 26
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=52.40 E-value=11 Score=35.30 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=17.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHh
Q 048543 133 FNRALGTFSAGGLSLGIAELS 153 (282)
Q Consensus 133 ~~RilGTllG~~lg~~l~~l~ 153 (282)
+-|+.||++||++|++...+.
T Consensus 344 ~IrinGallG~liG~~~~~i~ 364 (367)
T PF04286_consen 344 WIRINGALLGGLIGLLQYLIL 364 (367)
T ss_pred hhhhhhHHHHHHHHHHHHHHH
Confidence 458999999999999987663
No 27
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=47.49 E-value=2.3e+02 Score=26.15 Aligned_cols=82 Identities=9% Similarity=-0.002 Sum_probs=39.7
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHH-hhhhHHHhhhccCCCCcccchhhHHHhhhHHHHH
Q 048543 193 FRTAFYRL-VLIAVGAGICLVVNVCIYPMWAGEDLHKLVVKFSKA-SLLPWKCVEYERVPSKILTYQASEFLMTQRIVVI 270 (282)
Q Consensus 193 ~~~a~~Ri-l~i~IG~~ial~v~~li~P~~a~~~L~~~va~~l~~-~~~Yl~~v~~~~~~~~~l~y~~~~~~~~q~~~~~ 270 (282)
+..+..|+ +-+++|++|+-.....||- +++...+...-.. ..++.+.+..+..+...-..+.-+.+..|.....
T Consensus 80 ~~~~~~R~~lAvliaivIs~pl~l~iF~----~eI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 155 (301)
T PF14362_consen 80 LLQALPRLLLAVLIAIVISEPLELKIFE----KEIDQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLE 155 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34667786 7778888888777777763 3444444433332 3334444433221111111122244444444444
Q ss_pred HHHHHHHh
Q 048543 271 DRLYSLRA 278 (282)
Q Consensus 271 ~r~~~~~~ 278 (282)
+++..+..
T Consensus 156 ~~~~~~~~ 163 (301)
T PF14362_consen 156 KEIDRAQQ 163 (301)
T ss_pred HHHHHHHH
Confidence 44444443
No 28
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=47.47 E-value=53 Score=25.71 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 048543 191 TFFRTAFYRLVLIAVGAGICLVVNVCIYPM 220 (282)
Q Consensus 191 ~~~~~a~~Ril~i~IG~~ial~v~~li~P~ 220 (282)
+....+.+|++-+++|+.+++++.. +.|.
T Consensus 31 ~~~~~~~~Ri~Gt~iG~~~~~~~~~-~~~~ 59 (128)
T PF13515_consen 31 ATVNRAIQRILGTLIGVVLGLLLLY-LFPG 59 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HcCC
Confidence 7888999999999999999999875 4443
No 29
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=47.34 E-value=1.2e+02 Score=29.20 Aligned_cols=79 Identities=9% Similarity=0.094 Sum_probs=40.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhhcC-------chhHhHHHHhc------chhhHHHHHHHHHHHHHHhcCCh-hHHHH
Q 048543 130 NKGFNRALGTFSAGGLSLGIAELSVCR-------GLPGSYYCHQY------FYSRLASFFLLTYCIVLVSGTST-TFFRT 195 (282)
Q Consensus 130 ~k~~~RilGTllG~~lg~~l~~l~~~~-------g~~~~vf~~t~------~~~Y~~~v~~lT~~lV~v~~~~~-~~~~~ 195 (282)
..+..-+++|+.|+.+++....++..- +++..=..-.| +.-.+..++.+.|+++.+...++ ....
T Consensus 44 ~~~ar~lLstia~smitv~~~~fSi~~val~~assq~sPR~l~~f~~d~~~q~vLg~Figtfvy~l~~l~~i~~~~~~~- 122 (371)
T PF10011_consen 44 PDGARTLLSTIAGSMITVTGFVFSITLVALQLASSQFSPRLLRNFMRDRVTQVVLGTFIGTFVYSLLVLIAIRSGDYGS- 122 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcccccccc-
Confidence 344566788888888888765552110 00000011122 45556666777778777766554 1111
Q ss_pred HHHHHHHHHHHHHHHH
Q 048543 196 AFYRLVLIAVGAGICL 211 (282)
Q Consensus 196 a~~Ril~i~IG~~ial 211 (282)
..++. +.+++++++
T Consensus 123 -~p~~~-~~~a~~l~i 136 (371)
T PF10011_consen 123 -VPRLS-VFIALALAI 136 (371)
T ss_pred -CcchH-HHHHHHHHH
Confidence 44444 455544444
No 30
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.38 E-value=49 Score=26.87 Aligned_cols=35 Identities=9% Similarity=0.055 Sum_probs=25.5
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHhhcCchhHhH
Q 048543 127 ATLNKGFNRALGTFSAGGLSLGIAELSVCRGLPGSY 162 (282)
Q Consensus 127 aT~~k~~~RilGTllG~~lg~~l~~l~~~~g~~~~v 162 (282)
.-+.-+.+=+-|+++|+++|+++=.++... ||..+
T Consensus 44 ~a~klssefIsGilVGa~iG~llD~~agTs-PwglI 78 (116)
T COG5336 44 QAFKLSSEFISGILVGAGIGWLLDKFAGTS-PWGLI 78 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cHHHH
Confidence 344555666889999999999998776544 56654
No 31
>COG2733 Predicted membrane protein [Function unknown]
Probab=36.76 E-value=18 Score=35.52 Aligned_cols=22 Identities=32% Similarity=0.286 Sum_probs=18.5
Q ss_pred HhhhhHHHHHHHHHHHHHHHhh
Q 048543 133 FNRALGTFSAGGLSLGIAELSV 154 (282)
Q Consensus 133 ~~RilGTllG~~lg~~l~~l~~ 154 (282)
+-|+=||++||++|++++.+..
T Consensus 391 ~IRiNGtvVGG~~Gllly~I~~ 412 (415)
T COG2733 391 FIRINGTVVGGIAGLLLYAISQ 412 (415)
T ss_pred EEeEcCchHHHHHHHHHHHHHh
Confidence 3488999999999999987743
No 32
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=36.10 E-value=33 Score=28.00 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHHHHHHH-hhcCc
Q 048543 134 NRALGTFSAGGLSLGIAEL-SVCRG 157 (282)
Q Consensus 134 ~RilGTllG~~lg~~l~~l-~~~~g 157 (282)
.=++|+++||++|.+...+ +|..|
T Consensus 6 ~~l~G~liGgiiGa~aaLL~AP~sG 30 (115)
T COG4980 6 DFLFGILIGGIIGAAAALLFAPKSG 30 (115)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCccc
Confidence 3478999999999987665 44444
No 33
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=34.90 E-value=1.2e+02 Score=24.77 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhcccCc
Q 048543 201 VLIAVGAGICLVVNVCIYPM 220 (282)
Q Consensus 201 l~i~IG~~ial~v~~li~P~ 220 (282)
+..+||++|++++..+..+.
T Consensus 4 i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 4 IGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 44567888888887776665
No 34
>PRK11715 inner membrane protein; Provisional
Probab=32.75 E-value=1.7e+02 Score=29.19 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhccChhhHHHHHHhhhhHH
Q 048543 87 GLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFEFSVGATLNKGFNRALGT 139 (282)
Q Consensus 87 aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~qps~GaT~~k~~~RilGT 139 (282)
|+|+++-.++-...+-+.+| ..+|++.-.+++.+-.-+....-|++.|.++-
T Consensus 338 GlAl~lFYLLLLSlSEHigF-~~AYliAa~a~v~li~~Y~~~vl~~~k~g~~~ 389 (436)
T PRK11715 338 GLALVLFYLLLLSLSEHIGF-TLAYLIAALACVLLIGFYLSAVLRSWKRGLLF 389 (436)
T ss_pred HHHHHHHHHHHHHHHhhhch-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 44444443332223323445 46788887777777777888888888876543
No 35
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=32.18 E-value=75 Score=24.67 Aligned_cols=74 Identities=22% Similarity=0.159 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHhhhhH--HHhhhccCCCCcccch-hhHHHhhhHHHHHHHHHHH
Q 048543 203 IAVGAGICLVVNVCIYPMWAGEDLHKLVVKFSKASLLPW--KCVEYERVPSKILTYQ-ASEFLMTQRIVVIDRLYSL 276 (282)
Q Consensus 203 i~IG~~ial~v~~li~P~~a~~~L~~~va~~l~~~~~Yl--~~v~~~~~~~~~l~y~-~~~~~~~q~~~~~~r~~~~ 276 (282)
.++|+++++++.++.|-.|-...+++..++-...+-.-- ..+.....++-....+ -.+.-...|..++|||-+-
T Consensus 5 ~iv~~~~~v~~~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~~sr~~V~d~L~q~ 81 (87)
T PF10883_consen 5 QIVGGVGAVVALILAYLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRRLSRDSVIDQLQQH 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCHHHHHHHHHHc
Confidence 345666666666666666777777777555555432211 1110000010000001 1234467899999998653
No 36
>PF05433 Rick_17kDa_Anti: Glycine zipper 2TM domain; InterPro: IPR008816 This domain includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs []. The domain is found in several Rickettsia genus specific 17 kDa surface antigen proteins [].; GO: 0019867 outer membrane
Probab=30.90 E-value=33 Score=22.89 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=17.2
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHH
Q 048543 126 GATLNKGFNRALGTFSAGGLSLGI 149 (282)
Q Consensus 126 GaT~~k~~~RilGTllG~~lg~~l 149 (282)
|..+.+...|..||++|++++..+
T Consensus 14 G~~ig~~~g~~~g~~~Ga~~Ga~~ 37 (42)
T PF05433_consen 14 GSQIGGGNGRTLGAVAGAVAGALI 37 (42)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHH
Confidence 455566677888888888877665
No 37
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=29.12 E-value=2.3e+02 Score=28.33 Aligned_cols=34 Identities=9% Similarity=-0.018 Sum_probs=24.3
Q ss_pred cCCCCCchHHHHHHHHhhccChhhHHHHHHhhhhH
Q 048543 104 SNVSQYSIWAILTVVVVFEFSVGATLNKGFNRALG 138 (282)
Q Consensus 104 ~~~~~~~~WA~lTvvvV~qps~GaT~~k~~~RilG 138 (282)
.+| .-+|++.-.+++.+-..+....-|++.|.++
T Consensus 349 i~F-~~AYliAa~a~i~Li~~Y~~~vl~~~k~~~~ 382 (430)
T PF06123_consen 349 IGF-NLAYLIAALACIGLISLYLSSVLKSWKRGLI 382 (430)
T ss_pred hch-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 344 4678888777777777777777787777543
No 38
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=27.13 E-value=61 Score=23.70 Aligned_cols=20 Identities=10% Similarity=-0.112 Sum_probs=13.3
Q ss_pred HhhhhHHHHHHHHHHHHHHH
Q 048543 133 FNRALGTFSAGGLSLGIAEL 152 (282)
Q Consensus 133 ~~RilGTllG~~lg~~l~~l 152 (282)
..-+.||++|++++.++..+
T Consensus 50 ~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 50 TKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33456788888888776554
No 39
>PF13272 DUF4063: Protein of unknown function (DUF4063)
Probab=24.16 E-value=3.9e+02 Score=21.59 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhH
Q 048543 191 TFFRTAFYRLVLIAVGAGICLVVNVCIYPMWAGE 224 (282)
Q Consensus 191 ~~~~~a~~Ril~i~IG~~ial~v~~li~P~~a~~ 224 (282)
+-..+..+.+..+.+|++.+.-....+||. +++
T Consensus 23 ~Qlpv~lyKlslvslaavlGYwlDR~lFPy-ArP 55 (107)
T PF13272_consen 23 QQLPVVLYKLSLVSLAAVLGYWLDRALFPY-ARP 55 (107)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhccc-cCc
Confidence 345677899999999999999999999994 655
Done!