Query 048543
Match_columns 282
No_of_seqs 207 out of 1187
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 18:14:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048543.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048543hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vr8_C Cytochrome B-large subu 19.6 4E+02 0.014 22.3 9.0 104 120-224 62-179 (188)
2 4dx5_A Acriflavine resistance 15.2 8E+02 0.027 25.3 10.5 21 200-220 1004-1024(1057)
3 3ne5_A Cation efflux system pr 14.0 5.6E+02 0.019 26.5 9.0 20 201-220 1021-1040(1054)
4 1d2t_A Acid phosphatase; all a 13.8 2.9E+02 0.01 23.1 5.7 42 194-235 178-226 (231)
5 2ks1_B Epidermal growth factor 12.6 1.2E+02 0.0042 19.5 2.2 16 136-151 13-28 (44)
6 3ogl_Q JAZ1 incomplete degron 12.4 1.3E+02 0.0044 16.4 1.9 17 264-280 4-20 (21)
7 4dx5_A Acriflavine resistance 11.8 1.2E+03 0.04 24.0 11.8 20 201-220 472-491 (1057)
8 3ne5_A Cation efflux system pr 10.3 1.2E+03 0.041 24.0 10.1 21 200-220 486-506 (1054)
9 3ogk_Q JAZ1 incomplete degron 10.1 1.3E+02 0.0043 16.7 1.3 15 266-280 1-15 (22)
10 2ipb_A PHON protein, class A n 9.7 4.3E+02 0.015 22.0 5.4 20 201-220 180-199 (230)
No 1
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=19.56 E-value=4e+02 Score=22.29 Aligned_cols=104 Identities=19% Similarity=0.329 Sum_probs=51.9
Q ss_pred hhccChhhHHHHHHhhhhHHHHHHHHHHHHHHHhhcCchhHhH--HHHhc--chhh-HHHHHHHHHHH--HHHhcCChhH
Q 048543 120 VFEFSVGATLNKGFNRALGTFSAGGLSLGIAELSVCRGLPGSY--YCHQY--FYSR-LASFFLLTYCI--VLVSGTSTTF 192 (282)
Q Consensus 120 V~qps~GaT~~k~~~RilGTllG~~lg~~l~~l~~~~g~~~~v--f~~t~--~~~Y-~~~v~~lT~~l--V~v~~~~~~~ 192 (282)
+.+|...+.. -.++|+-|-++.+.+.+........+..+..+ +..++ +.-. .+..+.+++.+ =++.|.+.-.
T Consensus 62 IYr~qlt~~~-SIlHRITGv~L~~~l~l~~la~l~sp~~f~~~~~~~~s~~lp~~i~~lvk~~l~~a~~yH~~nGIRHLi 140 (188)
T 3vr8_C 62 IYKPQMTWMV-SGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEFIRGLGIPWVILDTFKFIIAFPIAFHTLNGIRFIG 140 (188)
T ss_pred eeCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4566666653 57899999888766555432221111111111 11111 0000 01112222221 1234444311
Q ss_pred HH-------HHHHHHHHHHHHHHHHHHHhhcccCcchhH
Q 048543 193 FR-------TAFYRLVLIAVGAGICLVVNVCIYPMWAGE 224 (282)
Q Consensus 193 ~~-------~a~~Ril~i~IG~~ial~v~~li~P~~a~~ 224 (282)
++ -...|...+++|+.+.+.+..-+.|.|..+
T Consensus 141 wD~G~gl~l~~~~~sg~~vl~lSvvltl~la~~~~~~~~ 179 (188)
T 3vr8_C 141 FDMAKGTDIPSIYRGAYLVLGLAALISLAVVVYPRWERH 179 (188)
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 21 124677888888887777778889998865
No 2
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=15.22 E-value=8e+02 Score=25.33 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhcccCc
Q 048543 200 LVLIAVGAGICLVVNVCIYPM 220 (282)
Q Consensus 200 il~i~IG~~ial~v~~li~P~ 220 (282)
-..+++|.+++++++.++.|.
T Consensus 1004 g~~~~~Gl~~s~~~tl~~~P~ 1024 (1057)
T 4dx5_A 1004 GTGVMGGMVTATVLAIFFVPV 1024 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888885
No 3
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=14.03 E-value=5.6e+02 Score=26.50 Aligned_cols=20 Identities=15% Similarity=0.183 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhcccCc
Q 048543 201 VLIAVGAGICLVVNVCIYPM 220 (282)
Q Consensus 201 l~i~IG~~ial~v~~li~P~ 220 (282)
..+++|.+++++++.++.|.
T Consensus 1021 ~~~~~Gl~~s~~~tl~v~P~ 1040 (1054)
T 3ne5_A 1021 APMIGGMITAPLLSLFIIPA 1040 (1054)
T ss_dssp HHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 45677888888888888885
No 4
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=13.81 E-value=2.9e+02 Score=23.14 Aligned_cols=42 Identities=7% Similarity=-0.186 Sum_probs=26.5
Q ss_pred HHHHHHH-------HHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHH
Q 048543 194 RTAFYRL-------VLIAVGAGICLVVNVCIYPMWAGEDLHKLVVKFSK 235 (282)
Q Consensus 194 ~~a~~Ri-------l~i~IG~~ial~v~~li~P~~a~~~L~~~va~~l~ 235 (282)
.++..|+ .|++.|.+++..+...++-....++.-...++.++
T Consensus 178 ~v~~SRvylGvH~psDVlaG~~lG~~~~~~~~~~~~~~~~~~~a~~e~~ 226 (231)
T 1d2t_A 178 ELGQSRVICGYHWQSDVDAARVVGSAVVATLHTNPAFQQQLQKAKAEFA 226 (231)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 4555665 68999999999888777654444444444444443
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=12.63 E-value=1.2e+02 Score=19.45 Aligned_cols=16 Identities=13% Similarity=-0.045 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHH
Q 048543 136 ALGTFSAGGLSLGIAE 151 (282)
Q Consensus 136 ilGTllG~~lg~~l~~ 151 (282)
+.|+++||++++++..
T Consensus 13 IA~gVVgGv~~~~ii~ 28 (44)
T 2ks1_B 13 IATGMVGALLLLLVVA 28 (44)
T ss_dssp STHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHH
Confidence 5677777777766543
No 6
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=12.41 E-value=1.3e+02 Score=16.44 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHhhh
Q 048543 264 TQRIVVIDRLYSLRAKR 280 (282)
Q Consensus 264 ~q~~~~~~r~~~~~~~~ 280 (282)
..|.++++|+.+-|.-|
T Consensus 4 ~aRk~SLqRFleKRk~R 20 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDR 20 (26)
T ss_pred hhHHHHHHHHHHHhhcc
Confidence 46889999999877654
No 7
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=11.82 E-value=1.2e+03 Score=24.04 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhcccCc
Q 048543 201 VLIAVGAGICLVVNVCIYPM 220 (282)
Q Consensus 201 l~i~IG~~ial~v~~li~P~ 220 (282)
+.+++|.+++++++.++.|.
T Consensus 472 ~~~~~gl~~s~~~~l~~~P~ 491 (1057)
T 4dx5_A 472 ITIVSAMALSVLVALILTPA 491 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888877774
No 8
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=10.30 E-value=1.2e+03 Score=23.98 Aligned_cols=21 Identities=5% Similarity=0.145 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhcccCc
Q 048543 200 LVLIAVGAGICLVVNVCIYPM 220 (282)
Q Consensus 200 il~i~IG~~ial~v~~li~P~ 220 (282)
-..+++|.+++++++.++.|.
T Consensus 486 ~~~~~~gl~~s~~~~l~~~P~ 506 (1054)
T 3ne5_A 486 AFTKTYAMAGAALLAIVVIPI 506 (1054)
T ss_dssp HHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999998885
No 9
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=10.09 E-value=1.3e+02 Score=16.69 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhh
Q 048543 266 RIVVIDRLYSLRAKR 280 (282)
Q Consensus 266 ~~~~~~r~~~~~~~~ 280 (282)
|.++++|+.|-|.-|
T Consensus 1 Rk~SLqRFleKRk~R 15 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDR 15 (26)
T ss_pred CchhHHHHHHHHHHH
Confidence 467888988877654
No 10
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=9.67 E-value=4.3e+02 Score=22.00 Aligned_cols=20 Identities=10% Similarity=-0.001 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhcccCc
Q 048543 201 VLIAVGAGICLVVNVCIYPM 220 (282)
Q Consensus 201 l~i~IG~~ial~v~~li~P~ 220 (282)
.|++.|.+++.++...++-.
T Consensus 180 sDVlaG~~lG~~~~~~~~~~ 199 (230)
T 2ipb_A 180 SDVDAGRYVGAVEFARLQTI 199 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 68999999998888776633
Done!