Query 048543
Match_columns 282
No_of_seqs 207 out of 1187
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 18:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048543.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048543hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seta1 a.2.7.1 (A:1-110) Sery 16.2 35 0.0025 23.9 2.2 22 260-281 31-52 (110)
2 d1ppjc2 f.21.1.2 (C:15-260) Mi 13.0 2.6E+02 0.019 22.1 7.3 63 65-131 84-148 (246)
3 d2au5a1 a.244.1.1 (A:1-132) Hy 6.8 96 0.007 22.2 1.7 15 268-282 87-101 (132)
4 d1t5ja_ a.209.1.1 (A:) Hypothe 5.8 1.3E+02 0.0094 23.8 2.3 20 131-150 3-22 (301)
5 d1dvoa_ a.136.1.1 (A:) Repress 5.4 1.7E+02 0.013 21.7 2.7 37 237-280 98-141 (152)
6 d1q90b_ f.21.1.2 (B:) Cytochro 4.8 6.6E+02 0.048 19.1 7.2 51 76-130 109-163 (212)
7 d2nwwa1 f.49.1.1 (A:12-416) Pr 4.8 7.4E+02 0.054 20.1 7.0 27 195-221 74-100 (405)
8 d1leha1 c.2.1.7 (A:135-364) Le 4.6 6.2E+02 0.045 19.4 5.9 52 213-268 159-210 (230)
9 d2e74d2 f.23.12.1 (D:12-45) IS 4.4 2.2E+02 0.016 15.6 1.9 12 137-148 13-24 (34)
10 d1d2ta_ a.111.1.1 (A:) Bacteri 4.3 6.5E+02 0.047 19.0 5.7 35 201-235 186-220 (224)
No 1
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=16.18 E-value=35 Score=23.88 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=19.8
Q ss_pred HHHhhhHHHHHHHHHHHHhhhC
Q 048543 260 EFLMTQRIVVIDRLYSLRAKRN 281 (282)
Q Consensus 260 ~~~~~q~~~~~~r~~~~~~~~~ 281 (282)
--++.+|+.....+.+++++||
T Consensus 31 ~~ld~~rr~l~~~~e~l~~~rN 52 (110)
T d1seta1 31 LALDREVQELKKRLQEVQTERN 52 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999998
No 2
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.98 E-value=2.6e+02 Score=22.11 Aligned_cols=63 Identities=11% Similarity=0.085 Sum_probs=36.7
Q ss_pred HHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhh--ccChhhHHHH
Q 048543 65 IFIQFYDMGRKDPRKAVFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVF--EFSVGATLNK 131 (282)
Q Consensus 65 ~~~~~w~~~~~dp~~~~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~--qps~GaT~~k 131 (282)
..|.++--.=..||.+..++=..+.+...+..+|..+. +|.+||+....-=++ -|-+|..+..
T Consensus 84 m~r~~~~~sy~~~~~w~~G~~l~~l~m~~af~GY~Lpw----~qms~wa~~V~t~l~~~iP~iG~~l~~ 148 (246)
T d1ppjc2 84 VGRGLYYGSYTFLETWNIGVILLLTVMATAFMGYVLPW----GQMSFWGATVITNLLSAIPYIGTNLVE 148 (246)
T ss_dssp HHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHHHHTTC----BHHHHHHHHHHHGGGGGSTTTHHHHHH
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHHHHHHHeeccCCC----cchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444433333567776666555555556777777763 478999984333333 3666766543
No 3
>d2au5a1 a.244.1.1 (A:1-132) Hypothetical protein EF2947 {Enterococcus faecalis [TaxId: 1351]}
Probab=6.83 E-value=96 Score=22.19 Aligned_cols=15 Identities=47% Similarity=0.457 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhhCC
Q 048543 268 VVIDRLYSLRAKRNL 282 (282)
Q Consensus 268 ~~~~r~~~~~~~~~~ 282 (282)
.-+.||+.+.+||||
T Consensus 87 ~~Li~LY~~~~~~~L 101 (132)
T d2au5a1 87 ARLIRLYFALAKDNL 101 (132)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhc
Confidence 346799999999997
No 4
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.79 E-value=1.3e+02 Score=23.79 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=16.8
Q ss_pred HHHhhhhHHHHHHHHHHHHH
Q 048543 131 KGFNRALGTFSAGGLSLGIA 150 (282)
Q Consensus 131 k~~~RilGTllG~~lg~~l~ 150 (282)
+..+|+.|.++|.++|=++.
T Consensus 3 ~m~dR~~GallG~avGDAlG 22 (301)
T d1t5ja_ 3 KMRDKILGSVFGAVIGDALG 22 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcc
Confidence 56789999999999997764
No 5
>d1dvoa_ a.136.1.1 (A:) Repressor of bacterial conjugation FinO {Escherichia coli [TaxId: 562]}
Probab=5.43 E-value=1.7e+02 Score=21.69 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=20.9
Q ss_pred hhhhHHHhhhc-------cCCCCcccchhhHHHhhhHHHHHHHHHHHHhhh
Q 048543 237 SLLPWKCVEYE-------RVPSKILTYQASEFLMTQRIVVIDRLYSLRAKR 280 (282)
Q Consensus 237 ~~~Yl~~v~~~-------~~~~~~l~y~~~~~~~~q~~~~~~r~~~~~~~~ 280 (282)
+.+|+.|+..+ .+|.-.++ ..|+--+..||.+.++||
T Consensus 98 s~rYL~~~~~ga~R~DL~G~p~g~Vt-------~e~~~~A~~~L~~~r~~~ 141 (152)
T d1dvoa_ 98 SESYLCAMKAGACRYDTEGYVTEHIS-------QEEEVYAAERLDKIRRQN 141 (152)
T ss_dssp SHHHHHHCCTTCEEECTTSCEEEECC-------HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCeeECCCCCCCCcCC-------HHHHHHHHHHHHHHHHHH
Confidence 55799998521 12333333 556666666666655554
No 6
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.84 E-value=6.6e+02 Score=19.09 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=26.6
Q ss_pred CchHH--HHHHHHHHHHHHHHHHHHhhccccCCCCCchHHHHHHHHhhc--cChhhHHH
Q 048543 76 DPRKA--VFAAKMGLSLALVSLVVFFKEPLSNVSQYSIWAILTVVVVFE--FSVGATLN 130 (282)
Q Consensus 76 dp~~~--~~alK~aLalala~ll~~~~~~~~~~~~~~~WA~lTvvvV~q--ps~GaT~~ 130 (282)
.||.. .-++=..+.+...+..+|+.+ .+|.+||+.....-.++ |-+|.++.
T Consensus 109 ~pre~~W~~Gv~l~~l~m~~aftGY~Lp----w~q~sywa~~V~~~l~~~iP~iG~~l~ 163 (212)
T d1q90b_ 109 RPRELTWVTGVIMAVCTVSFGVTGYSLP----WDQVGYWAVKIVTGVPDAIPGVGGFIV 163 (212)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHTT----CBHHHHHHHHHHHHGGGGSTTHHHHHH
T ss_pred CcccceehHhHHHHHHHHHHHHhhhhcc----hhhHHHHHHHHHHHHHHHHhhccHHHH
Confidence 45543 334433444444455666665 34788998744333333 55555543
No 7
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=4.79 E-value=7.4e+02 Score=20.13 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCcc
Q 048543 195 TAFYRLVLIAVGAGICLVVNVCIYPMW 221 (282)
Q Consensus 195 ~a~~Ril~i~IG~~ial~v~~li~P~~ 221 (282)
....=+..+++++.+++++..++.|..
T Consensus 74 ti~~~l~tt~iA~~igl~~~~~~~pg~ 100 (405)
T d2nwwa1 74 IVVYYLLTSAFAVTLGIIMARLFNPGA 100 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 444455778889999999999998854
No 8
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}
Probab=4.58 E-value=6.2e+02 Score=19.36 Aligned_cols=52 Identities=12% Similarity=0.010 Sum_probs=26.4
Q ss_pred HhhcccCcchhHHHHHHHHHHHHHhhhhHHHhhhccCCCCcccchhhHHHhhhHHH
Q 048543 213 VNVCIYPMWAGEDLHKLVVKFSKASLLPWKCVEYERVPSKILTYQASEFLMTQRIV 268 (282)
Q Consensus 213 v~~li~P~~a~~~L~~~va~~l~~~~~Yl~~v~~~~~~~~~l~y~~~~~~~~q~~~ 268 (282)
++++=|-.|..++..+.+.+..+...+-++..+... .....+++.+-.||++
T Consensus 159 ~s~~E~~~~~~~~~~~~l~~I~~~~~~vl~~a~~~~----~~~~~aA~~~A~~ri~ 210 (230)
T d1leha1 159 NVADELYGYNRTRAMKRVDGIYDSIEKIFAISKRDG----VPSYVAADRMAEERIA 210 (230)
T ss_dssp HHHHGGGCCCHHHHHHHHTHHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHH
T ss_pred hhhhhhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHC----cCHHHHHHHHHHHHHH
Confidence 345555567777777777554444333343333222 2244555555544443
No 9
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.39 E-value=2.2e+02 Score=15.64 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHH
Q 048543 137 LGTFSAGGLSLG 148 (282)
Q Consensus 137 lGTllG~~lg~~ 148 (282)
.||+.|..+|.+
T Consensus 13 fgt~tg~alg~l 24 (34)
T d2e74d2 13 FGTVTGVALGAL 24 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhhHHHHHHhhh
Confidence 567766666654
No 10
>d1d2ta_ a.111.1.1 (A:) Bacterial acid phosphatase {Escherichia blattae [TaxId: 563]}
Probab=4.27 E-value=6.5e+02 Score=19.02 Aligned_cols=35 Identities=6% Similarity=-0.239 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHH
Q 048543 201 VLIAVGAGICLVVNVCIYPMWAGEDLHKLVVKFSK 235 (282)
Q Consensus 201 l~i~IG~~ial~v~~li~P~~a~~~L~~~va~~l~ 235 (282)
.|++.|..++..+...++-.-..++.....++.+.
T Consensus 186 sDv~aG~~lG~ai~a~l~~~~~f~~~~~~a~~e~~ 220 (224)
T d1d2ta_ 186 SDVDAARVVGSAVVATLHTNPAFQQQLQKAKAEFA 220 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 67888888876655444433222333344444443
Done!