BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048544
(153 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q9Q|A Chain A, The Crystal Structure Of Full Length Human Gins Complex
pdb|2Q9Q|E Chain E, The Crystal Structure Of Full Length Human Gins Complex
Length = 191
Score = 130 bits (327), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 94/141 (66%), Gaps = 2/141 (1%)
Query: 7 PHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKR 66
P S EVEF+AE ELV I+PN +D + I GD GPF P +PV+VPLWLA LK+R
Sbjct: 2 PLGSNMDAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQR 61
Query: 67 GKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVR 125
KC + PP+WM +E L K+ + ER++ TF +P +Y+E+++LL +HA D+IP +R
Sbjct: 62 QKCRLLPPEWMDVEKLEKMRDHERKEE-TFTPMPSPYYMELTKLLLNHASDNIPKADEIR 120
Query: 126 SLIEDIRDVRLHKIETNLEKF 146
+L++D+ D R+ K+ + + F
Sbjct: 121 TLVKDMWDTRIAKLRVSADSF 141
>pdb|2E9X|B Chain B, The Crystal Structure Of Human Gins Core Complex
pdb|2E9X|F Chain F, The Crystal Structure Of Human Gins Core Complex
Length = 185
Score = 130 bits (326), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 92/132 (69%), Gaps = 2/132 (1%)
Query: 16 EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
EVEF+AE ELV I+PN +D + I GD GPF P +PV+VPLWLA LK+R KC + PP+
Sbjct: 5 EVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPE 64
Query: 76 WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
WM +E L K+ + ER++ TF +P +Y+E+++LL +HA D+IP +R+L++D+ D
Sbjct: 65 WMDVEKLEKMRDHERKEE-TFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDT 123
Query: 135 RLHKIETNLEKF 146
R+ K+ + + F
Sbjct: 124 RIAKLRVSADSF 135
>pdb|2EHO|C Chain C, Crystal Structure Of Human Gins Complex
pdb|2EHO|G Chain G, Crystal Structure Of Human Gins Complex
pdb|2EHO|K Chain K, Crystal Structure Of Human Gins Complex
Length = 186
Score = 124 bits (312), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 87/132 (65%), Gaps = 2/132 (1%)
Query: 16 EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
EVEF+AE ELV I+PN +D + I GD GPF P +PV+VPLWLA LK+R KC + PP+
Sbjct: 6 EVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPE 65
Query: 76 WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
W +E L K + ER++ TF P +Y E+++LL +HA D+IP +R+L++D D
Sbjct: 66 WXDVEKLEKXRDHERKEE-TFTPXPSPYYXELTKLLLNHASDNIPKADEIRTLVKDXWDT 124
Query: 135 RLHKIETNLEKF 146
R+ K+ + + F
Sbjct: 125 RIAKLRVSADSF 136
>pdb|2I99|A Chain A, Crystal Structure Of Human Mu_crystallin At 2.6 Angstrom
pdb|2I99|B Chain B, Crystal Structure Of Human Mu_crystallin At 2.6 Angstrom
Length = 312
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 8/118 (6%)
Query: 28 IVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLE 87
++P + NF G G + VP+ K RG + P + + LT L
Sbjct: 22 LIPPLETALANFSSGPEGGVMQPVRTVVPV-----TKHRGYLGVMPAYSAAEDALTTKLV 76
Query: 88 GEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLEK 145
EDRG VP H + + LLF+ + + + M ++I R + I T K
Sbjct: 77 TFYEDRGITSVVPSH--QATVLLFEPSNGTLLAV-MDGNVITAKRTAAVSAIATKFLK 131
>pdb|1LA2|A Chain A, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|B Chain B, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|C Chain C, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
pdb|1LA2|D Chain D, Structural Analysis Of Saccharomyces Cerevisiae Myo-
Inositol Phosphate Synthase
Length = 533
Score = 29.3 bits (64), Expect = 1.0, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 11 LFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCT 70
L +P ++ + E V ++DP+ G F FYP + + WL A L + G
Sbjct: 441 LATPLIIDLLVXTEFCTRVSYKKVDPVKEDAGKFENFYPVLTF-LSYWLKAPLTRPGFHP 499
Query: 71 IR--PPQWMSIENLTKVLEG 88
+ Q ++EN ++L G
Sbjct: 500 VNGLNKQRTALENFLRLLIG 519
>pdb|1JKF|A Chain A, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKF|B Chain B, Holo 1l-Myo-Inositol-1-Phosphate Synthase
pdb|1JKI|A Chain A, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1JKI|B Chain B, Myo-Inositol-1-Phosphate Synthase Complexed With An
Inhibitor, 2- Deoxy-Glucitol-6-Phosphate
pdb|1P1F|A Chain A, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1F|B Chain B, Crystal Structure Of Apo 1l-Myo-Inositol 1-Phosphate
Synthase
pdb|1P1H|A Chain A, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|B Chain B, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|C Chain C, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1H|D Chain D, Crystal Structure Of The 1l-Myo-InositolNAD+ COMPLEX
pdb|1P1I|A Chain A, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1I|B Chain B, Crystal Structure Of The Nad+-Bound 1l-Myo-Inositol
1-Phosphate Synthase
pdb|1P1J|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1J|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh
pdb|1P1K|A Chain A, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1P1K|B Chain B, Crystal Structure Of The 1l-Myo-Inositol 1-Phosphate
Synthase Complexed With Nadh In The Presence Of Edta
pdb|1RM0|A Chain A, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
pdb|1RM0|B Chain B, Crystal Structure Of Myo-Inositol 1-Phosphate Synthase
From Saccharomyces Cerevisiae In Complex With Nad+ And
2-Deoxy-D-Glucitol 6-(E)-Vinylhomophosphonate
Length = 533
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 11 LFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCT 70
L +P ++ + E V ++DP+ G F FYP + + WL A L + G
Sbjct: 441 LATPLIIDLLVMTEFCTRVSYKKVDPVKEDAGKFENFYPVLTF-LSYWLKAPLTRPGFHP 499
Query: 71 IRP--PQWMSIENLTKVLEG 88
+ Q ++EN ++L G
Sbjct: 500 VNGLNKQRTALENFLRLLIG 519
>pdb|1VDH|A Chain A, Structure-Based Functional Identification Of A Novel Heme-
Binding Protein From Thermus Thermophilus Hb8
pdb|1VDH|B Chain B, Structure-Based Functional Identification Of A Novel Heme-
Binding Protein From Thermus Thermophilus Hb8
pdb|1VDH|C Chain C, Structure-Based Functional Identification Of A Novel Heme-
Binding Protein From Thermus Thermophilus Hb8
pdb|1VDH|D Chain D, Structure-Based Functional Identification Of A Novel Heme-
Binding Protein From Thermus Thermophilus Hb8
pdb|1VDH|E Chain E, Structure-Based Functional Identification Of A Novel Heme-
Binding Protein From Thermus Thermophilus Hb8
Length = 249
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 9 VSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFY 48
V LFS V+F +IV MR D ++ G+FGPF+
Sbjct: 200 VDLFSEDPVQFK------KIVYEMRFDEVSARYGEFGPFF 233
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,642,529
Number of Sequences: 62578
Number of extensions: 181304
Number of successful extensions: 251
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 8
length of query: 153
length of database: 14,973,337
effective HSP length: 90
effective length of query: 63
effective length of database: 9,341,317
effective search space: 588502971
effective search space used: 588502971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)