BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048544
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7A8|PSF2_ARATH DNA replication complex GINS protein PSF2 OS=Arabidopsis thaliana
GN=GINS2 PE=2 SV=2
Length = 210
Score = 262 bits (670), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 120/153 (78%), Positives = 135/153 (88%)
Query: 1 MAGQSDPHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLA 60
MAGQ+DPH+SLFSP EVEFMAEDELVEIVPNM M+ LNFI GDFG F PQIP KVPLWLA
Sbjct: 1 MAGQTDPHISLFSPQEVEFMAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLA 60
Query: 61 AALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPD 120
ALK+RGKCT RPP WMS++NLT++LE ERE + TFQA+PF Y+EI+RLLFDHARDDIPD
Sbjct: 61 VALKRRGKCTFRPPGWMSVDNLTQILEAERESQSTFQALPFSYVEIARLLFDHARDDIPD 120
Query: 121 IYMVRSLIEDIRDVRLHKIETNLEKFSATSAVK 153
+YMVRSL+EDIRDVRLHK+ETNL F TSAVK
Sbjct: 121 MYMVRSLVEDIRDVRLHKLETNLGSFQGTSAVK 153
>sp|Q9D600|PSF2_MOUSE DNA replication complex GINS protein PSF2 OS=Mus musculus GN=Gins2
PE=1 SV=1
Length = 185
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 91/132 (68%), Gaps = 2/132 (1%)
Query: 16 EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
EVEF+AE ELV I+PN +D + I GD GPF P +PV VPLWLA LK+R KC + PP+
Sbjct: 5 EVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVDVPLWLAINLKQRQKCRLLPPE 64
Query: 76 WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
WM +E L ++ + ER++ TF VP HY+EI++LL +HA D+IP +R+LI+D+ D
Sbjct: 65 WMDVEKLEQMRDEERKEE-TFTPVPSPHYMEITKLLLNHASDNIPKADTIRTLIKDLWDT 123
Query: 135 RLHKIETNLEKF 146
R+ K+ + + F
Sbjct: 124 RMAKLRVSADSF 135
>sp|Q9Y248|PSF2_HUMAN DNA replication complex GINS protein PSF2 OS=Homo sapiens GN=GINS2
PE=1 SV=1
Length = 185
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 92/132 (69%), Gaps = 2/132 (1%)
Query: 16 EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
EVEF+AE ELV I+PN +D + I GD GPF P +PV+VPLWLA LK+R KC + PP+
Sbjct: 5 EVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPE 64
Query: 76 WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
WM +E L K+ + ER++ TF +P +Y+E+++LL +HA D+IP +R+L++D+ D
Sbjct: 65 WMDVEKLEKMRDHERKEE-TFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDT 123
Query: 135 RLHKIETNLEKF 146
R+ K+ + + F
Sbjct: 124 RIAKLRVSADSF 135
>sp|Q7ZT46|PSF2_XENLA DNA replication complex GINS protein PSF2 OS=Xenopus laevis
GN=gins2 PE=2 SV=1
Length = 185
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 91/139 (65%), Gaps = 7/139 (5%)
Query: 16 EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
EVEF+AE E V ++PN +D + I GD GPF P +PV+VPLWLA LK+R KC I PP+
Sbjct: 5 EVEFLAEKEQVTVIPNFSLDKVYLIGGDLGPFNPSLPVEVPLWLAINLKQRQKCRIVPPE 64
Query: 76 WMSIENLTKVLEGEREDRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDV 134
WM +E L + + ER + TF +P +Y+E+++LL +HA D+IP +R+L++D D
Sbjct: 65 WMDVEKLEAIRDQERREE-TFTPMPSPYYMELTKLLLNHAADNIPKADEIRTLVKDTWDT 123
Query: 135 RLHKIETNLEKFSATSAVK 153
R+ K+ + SA S VK
Sbjct: 124 RIAKL-----RLSADSFVK 137
>sp|Q8IHI1|PSF2_BRUMA Probable DNA replication complex GINS protein PSF2 OS=Brugia malayi
GN=BMBAC01P19.06 PE=3 SV=1
Length = 190
Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
Query: 12 FSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTI 71
+P + EF+A +E ++I P +D L+ ICGD GPF +P+ VPLW+A L+KR KCTI
Sbjct: 1 MTPEQCEFIAGNEWIQINPQFNLDELHLICGDIGPFEAGMPIWVPLWIAVTLRKRRKCTI 60
Query: 72 RPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDI 131
PPQW+ +E L K++ E F VP Y+EI+ + +A++D+PD M+R ++D+
Sbjct: 61 IPPQWLCVEELKKLVIAE-SGTNAFGQVPRFYLEIAHMFVQYAKEDLPDSDMIRVYVQDL 119
Query: 132 RDVRLHKIETNLEKF 146
D R K+ + KF
Sbjct: 120 WDKRSAKLNNSSTKF 134
>sp|Q54BL9|PSF2_DICDI Probable DNA replication complex GINS protein PSF2 OS=Dictyostelium
discoideum GN=gins2 PE=3 SV=1
Length = 223
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 83/131 (63%)
Query: 14 PPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRP 73
P ++EF+AED + +VPN +M+ L F+ G++GPF P P+++PLWLA +LKK+ KCTI P
Sbjct: 8 PSQIEFLAEDTTITVVPNFKMESLIFLSGEYGPFVPSFPIEIPLWLAISLKKKKKCTITP 67
Query: 74 PQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRD 133
P WM+ L + E + + F +P ++ EIS LL + DDI DI +R L DI
Sbjct: 68 PDWMTYNKLKAKFQEENKIKDGFIELPENFDEISSLLLANCPDDIKDINKIRILKGDILS 127
Query: 134 VRLHKIETNLE 144
R K+E +L+
Sbjct: 128 RREKKLEESLK 138
>sp|P0CQ30|PSF2_CRYNJ DNA replication complex GINS protein PSF2 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=PSF2 PE=3 SV=1
Length = 185
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 83/133 (62%)
Query: 12 FSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTI 71
+P E+ F+AE + + IVP M + I G +GPF P +VPLWL +LKK+ KC I
Sbjct: 11 LTPDELAFLAEHDHISIVPLFSMTRVRLISGIYGPFRPPSASRVPLWLGLSLKKKRKCRI 70
Query: 72 RPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDI 131
PP+W+S E L L E+E+ F+ +P ++EIS++L D A DD+ ++RSL++DI
Sbjct: 71 VPPEWLSAERLQAFLRDEKENSEGFERLPRRFMEISKVLLDIASDDLSQPTLLRSLLKDI 130
Query: 132 RDVRLHKIETNLE 144
R+VR KI L+
Sbjct: 131 REVRQAKIRMGLQ 143
>sp|P0CQ31|PSF2_CRYNB DNA replication complex GINS protein PSF2 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=PSF2 PE=3 SV=1
Length = 185
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 83/133 (62%)
Query: 12 FSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTI 71
+P E+ F+AE + + IVP M + I G +GPF P +VPLWL +LKK+ KC I
Sbjct: 11 LTPDELAFLAEHDHISIVPLFSMTRVRLISGIYGPFRPPSASRVPLWLGLSLKKKRKCRI 70
Query: 72 RPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDI 131
PP+W+S E L L E+E+ F+ +P ++EIS++L D A DD+ ++RSL++DI
Sbjct: 71 VPPEWLSAERLQAFLRDEKENSEGFERLPRRFMEISKVLLDIASDDLSQPTLLRSLLKDI 130
Query: 132 RDVRLHKIETNLE 144
R+VR KI L+
Sbjct: 131 REVRQAKIRMGLQ 143
>sp|O62193|PSF2_CAEEL Probable DNA replication complex GINS protein PSF2
OS=Caenorhabditis elegans GN=F31C3.5 PE=3 SV=1
Length = 180
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 83/131 (63%), Gaps = 2/131 (1%)
Query: 17 VEFMAEDELVEIVPNMRMD-PLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
EF+A + L+E++P++ D P++ I GD GPF +P ++P+W A +K++ C + PQ
Sbjct: 6 CEFIAGNSLIEVIPSISDDRPIHLISGDIGPFEAGVPCRIPVWTAILMKRKHNCKVVAPQ 65
Query: 76 WMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVR 135
WM ++ L K+L E E +G +P H+ EIS +L AR+DI ++ V+SL++DI D R
Sbjct: 66 WMDVDELKKILTSETESQG-LAKLPDHFFEISHMLVRDAREDIFEVEAVKSLVQDIYDRR 124
Query: 136 LHKIETNLEKF 146
K+ ++ +F
Sbjct: 125 DAKLRSSAIEF 135
>sp|O94329|PSF2_SCHPO DNA replication complex GINS protein psf2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=psf2 PE=1 SV=1
Length = 183
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 76/136 (55%), Gaps = 1/136 (0%)
Query: 12 FSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTI 71
FSP E+EF+A +E + IVP+ MD L + P +VPLWLA LKK+ I
Sbjct: 11 FSPEEMEFLAGNEYINIVPSETMDQLPLVSATIPIMKPPKKCRVPLWLALELKKQNLARI 70
Query: 72 RPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDI 131
PP+WM I L + + E E+ TF +PF ++E + LL + DDI D+ +R ++ DI
Sbjct: 71 VPPEWMEIGKLENIRDDELENE-TFSELPFRWLETAHLLLNFCADDIEDVEDIRRILLDI 129
Query: 132 RDVRLHKIETNLEKFS 147
R+ R K T LE +
Sbjct: 130 REARQSKARTGLEAIN 145
>sp|Q6C5R2|PSF2_YARLI DNA replication complex GINS protein PSF2 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=PSF2 PE=3 SV=1
Length = 255
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 1/141 (0%)
Query: 8 HVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRG 67
+ F P E+ FMAE+E +EI+P +P+ D +P +VP+W+A ALKK+
Sbjct: 7 QLETFLPSELHFMAENETIEILPRRVGNPIKLAGTDLPLMHPLRKNRVPIWMAIALKKQQ 66
Query: 68 KCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPD-IYMVRS 126
+C PP WM NL ++L E + F V FH++EI++++ A DD+ ++R+
Sbjct: 67 RCQFVPPDWMEESNLRRILAFEHANPTAFSNVDFHWLEIAQIVLTTAPDDLTSPPQVIRN 126
Query: 127 LIEDIRDVRLHKIETNLEKFS 147
L+ DIR+VR K +++ +
Sbjct: 127 LVRDIREVREQKSRQGMKEVN 147
>sp|Q9VQY9|PSF2_DROME Probable DNA replication complex GINS protein PSF2 OS=Drosophila
melanogaster GN=Psf2 PE=2 SV=1
Length = 203
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 82/133 (61%)
Query: 14 PPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRP 73
P +EF+ E ++ I+PN +PL+ I G GPF PV VPLW+A L+K+ KC I P
Sbjct: 3 PSIIEFIGEKCMISIIPNFSNEPLHLIYGPVGPFRAGFPVFVPLWMATHLRKQQKCRIVP 62
Query: 74 PQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRD 133
P+WM ++ L ++ E E+ + + HY+ +++L+ A DD+P +R++I+DI D
Sbjct: 63 PEWMDMDILEEIKEEEKRSKFFTKMPCEHYMVVAQLVMSTAPDDVPRCEELRTVIKDIFD 122
Query: 134 VRLHKIETNLEKF 146
+R K+ T+++ F
Sbjct: 123 IRESKLRTSIDAF 135
>sp|Q6BZ44|PSF2_DEBHA DNA replication complex GINS protein PSF2 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=PSF2 PE=3 SV=2
Length = 206
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Query: 14 PPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRP 73
P EV F+AE+E + I+P M L I K+P+W+A LK + KC I P
Sbjct: 13 PSEVSFLAENEYITILPRYSMKKLELIGTKVPTLRGMRREKIPIWIAVILKSQDKCNIVP 72
Query: 74 PQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPD-IYMVRSLIEDIR 132
P+W+++ L + E E + F +P++++EIS++L + A DD+ D + +RS+I+D+R
Sbjct: 73 PEWLNLIYLKEKYEEELKQPHKFSVLPWNWLEISKILLNKAADDLSDPTHQLRSIIQDLR 132
Query: 133 DVRLHKIETNLEKFSATS 150
++RL K L++ + ++
Sbjct: 133 EIRLVKSRKGLKELNESN 150
>sp|Q0UTE1|PSF2_PHANO DNA replication complex GINS protein PSF2 OS=Phaeosphaeria nodorum
(strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=PSF2 PE=3
SV=1
Length = 242
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 31/169 (18%)
Query: 16 EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
E+ F+ E ELV ++P R++ L + G P P VPLWLA LK++ + I PP
Sbjct: 13 EIAFLCEMELVTVIPRQRLEGLELLGGRIKPLNPPHRTNVPLWLALLLKRQRRANILPPP 72
Query: 76 WMSIENLTKVLEGEREDRGTFQ-------------------------------AVPFHYI 104
W++ +LT +L+ E + TF A+P+H++
Sbjct: 73 WLNSHSLTAILDHEIDHDETFSPPPRLPPQPSANTLPTSPPFLSDNTADAAPDALPYHWL 132
Query: 105 EISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLEKFSATSAVK 153
EI +L + A DD D VR L+ +R+VR+ K+ + +E A VK
Sbjct: 133 EIGEMLLEAASDDFEDPDNVRKLLRGLREVRMAKLRSGVEVLDAGGGVK 181
>sp|Q75A06|PSF2_ASHGO DNA replication complex GINS protein PSF2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=PSF2 PE=3 SV=1
Length = 211
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 83/158 (52%), Gaps = 20/158 (12%)
Query: 12 FSPPEVEFMAEDELVEIVPNMRMDPL----------------NFICGD---FGPFYPQIP 52
FS EV+F+ E+E ++I+P + P+ I D
Sbjct: 11 FSLQEVQFLVENEPIKIMPRITTKPIRRKAASTPSAGSSVRWKLITTDDHNVNNMVAMSS 70
Query: 53 VKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFD 112
+V LWLA LK++GKC+I P W++I+ L +E E ++ F +P++++ I+ LLF
Sbjct: 71 TEVSLWLALLLKQQGKCSIVAPAWLTIKQLDSFIEFELQNTSRFANLPWNWLIIAHLLFQ 130
Query: 113 HARDDIPD-IYMVRSLIEDIRDVRLHKIETNLEKFSAT 149
A DD D ++++R+ I+D+R+ RL KI L+ + +
Sbjct: 131 KAADDFRDPVHILRAKIQDLREARLGKIAKGLQHLNES 168
>sp|Q6CRT8|PSF2_KLULA DNA replication complex GINS protein PSF2 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=PSF2 PE=3 SV=1
Length = 201
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 85/154 (55%), Gaps = 16/154 (10%)
Query: 12 FSPPEVEFMAEDELVEIVP---------NMRMDP---LNFICGDFGPFYPQIPV---KVP 56
FSP E++F+ E+E I+P + DP + I D + + +V
Sbjct: 11 FSPQEIQFLIENEPTRIMPRITTRKTKKQLAKDPGAQWSLITCDDSTVNNMVAMNSCEVT 70
Query: 57 LWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARD 116
LWLA LK++GKC + P W++++ L K L+ E ++ F +P++++ +S LLF D
Sbjct: 71 LWLALLLKQQGKCNVVVPSWLTLQQLEKYLDFELKNPSRFSNLPWNWLVVSSLLFARCSD 130
Query: 117 DIPD-IYMVRSLIEDIRDVRLHKIETNLEKFSAT 149
D D ++++RS ++D+R+VRL K+ L+ + +
Sbjct: 131 DFQDPVHLLRSKVQDLREVRLGKVNKGLQYLNES 164
>sp|Q6FS76|PSF2_CANGA DNA replication complex GINS protein PSF2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=PSF2 PE=3 SV=1
Length = 215
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 84/158 (53%), Gaps = 20/158 (12%)
Query: 12 FSPPEVEFMAEDELVEIVPNM-----RMDPLNFICGDFGPFYPQI--------------P 52
FSP EV+F+ E+E V+I P + R D GD + +
Sbjct: 11 FSPEEVQFLVEEETVKIFPRITTRQKRRDKNRGAYGDVDTKWSMLTTENDNLNNMVAMRS 70
Query: 53 VKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFD 112
+V LW+A LK++ KC+I P W+++ L + ++ E + F +P++++ I+ +LF
Sbjct: 71 TEVKLWIALLLKQQNKCSIVAPSWLTLRELNRKIQQETNNSDRFCDLPWNWLVIANVLFA 130
Query: 113 HARDDIPD-IYMVRSLIEDIRDVRLHKIETNLEKFSAT 149
A DD D ++ +RS ++D+R++R K+ L++ +A+
Sbjct: 131 KAADDFHDPVHELRSKVQDLREIRQTKVLKGLKQLNAS 168
>sp|Q4IC11|PSF2_GIBZE DNA replication complex GINS protein PSF2 OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=PSF2 PE=3 SV=1
Length = 250
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 42/182 (23%)
Query: 7 PHVSLFSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKR 66
P S +P EV F+ E ELV +VP R++ + + G P +PLWLA LKK+
Sbjct: 4 PLPSGLTPSEVAFLCEMELVTVVPRQRLESIELLTGTTPALRPPHRSNLPLWLAILLKKQ 63
Query: 67 GKCTIRPPQWMSIENLTKVLEGER-----------------EDRGTFQ------------ 97
+ I PP W+ ++L ++ E + RG +
Sbjct: 64 RRANIVPPPWLHPDSLRDIVHQETMVDRKGWAPPPPPPARADSRGNARNPFMDDETVLSP 123
Query: 98 -------------AVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLE 144
A+P+H+ E++ +L HA DDI VRSL+ D+++VR K+ ++
Sbjct: 124 PFLPSCTSDAPAGALPYHWFEVAEMLLAHASDDISSSSEVRSLLRDLQEVRAAKMRSSTA 183
Query: 145 KF 146
+
Sbjct: 184 QL 185
>sp|P40359|PSF2_YEAST DNA replication complex GINS protein PSF2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PSF2 PE=3
SV=1
Length = 213
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 83/158 (52%), Gaps = 22/158 (13%)
Query: 12 FSPPEVEFMAEDELVEIVPNMRMDPLNFICGD-------------------FGPFYPQIP 52
FSP E++F+ E+E ++I P R+ I GD
Sbjct: 11 FSPEEIQFIVENEPIKIFP--RITTRQKIRGDDRGTGNHTRWQLITTDDKALNNMVAMRS 68
Query: 53 VKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFD 112
+V LW+A LK++ KC+I PQW++ + L + ++ E+ F +P++++ ++R+LF+
Sbjct: 69 TEVVLWIALLLKQQSKCSIVAPQWLTTKELDRKIQYEKTHPDRFSELPWNWLVLARILFN 128
Query: 113 HARDDIPD-IYMVRSLIEDIRDVRLHKIETNLEKFSAT 149
A+DD D I+ +R I+D+R++R K+ L+ + +
Sbjct: 129 KAKDDFHDPIHELRGKIQDLREIRQIKVLKGLKYLNES 166
>sp|Q59MA3|PSF2_CANAL DNA replication complex GINS protein PSF2 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=PSF2 PE=3 SV=1
Length = 155
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 55 VPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHA 114
VPLW+A LK + KC+I PP+W+++ L + E E F +P++++E+S++L + A
Sbjct: 6 VPLWVALILKSQDKCSIVPPKWLTVAYLKERYEDEIRKPLQFSDLPWNWLELSKILLEKA 65
Query: 115 RDDIPD-IYMVRSLIEDIRDVRLHKIETNLEKFSATS 150
DD+ D + +RS+I+D+R+ RL K + L++ + ++
Sbjct: 66 PDDLSDPVDQLRSVIQDLRETRLVKSKKGLKELNESN 102
>sp|Q5B0M9|PSF2_EMENI DNA replication complex GINS protein psf2 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=psf2 PE=3 SV=2
Length = 272
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 50/87 (57%)
Query: 12 FSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTI 71
+PPE+ F+AE ELV IVP R++ L + G P P VPLWLA LK++ + I
Sbjct: 9 ITPPEISFLAEMELVTIVPRQRLEGLELLGGPVAPLIPPRRTNVPLWLALLLKRQRRANI 68
Query: 72 RPPQWMSIENLTKVLEGEREDRGTFQA 98
PP W+ E+L+ +L+ E D+ A
Sbjct: 69 LPPPWLHPESLSLILDIETRDQAYQHA 95
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 99 VPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLE 144
+PFH++E+ +L D A DD+ D R L++++R+VR KI + +E
Sbjct: 156 LPFHWLEVGTMLLDAAADDLVDPDQTRRLLKELREVRSAKIRSGVE 201
>sp|Q2UEN6|PSF2_ASPOR DNA replication complex GINS protein psf2 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=psf2 PE=3 SV=1
Length = 269
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 56/195 (28%)
Query: 12 FSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTI 71
+PPE+ F+AE E+V I+P R++ L + G P P +PLWLA LK++ + I
Sbjct: 9 ITPPEISFLAEMEMVTILPRQRLEGLELLGGPVEPLLPPRRASLPLWLALLLKRQRRANI 68
Query: 72 RPPQWMSIENLTKVLEGERE-----------------------------------DRGTF 96
PP W+ E+L+ +LE E + D G +
Sbjct: 69 LPPPWLHPESLSLILEIETQHHEYQHAFSPPPPLPGQPSLRDRGKRPVAMPRYTPDGGRY 128
Query: 97 QAVP---------------------FHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVR 135
P FH++E+ +L D A DD+ D R L++++R+VR
Sbjct: 129 YPAPPFLPQNVAQDHVPSGEPPSLPFHWLEVGTMLLDAASDDLVDPDQTRRLLKELREVR 188
Query: 136 LHKIETNLEKFSATS 150
KI + ++ A S
Sbjct: 189 TAKIRSGVDVLDAAS 203
>sp|Q4X161|PSF2_ASPFU DNA replication complex GINS protein psf2 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=psf2 PE=3 SV=1
Length = 271
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 84/191 (43%), Gaps = 58/191 (30%)
Query: 12 FSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTI 71
+PPE+ F+AE E+V I+P R++ L + G P P +PLWLA LK++ + I
Sbjct: 9 ITPPEIAFLAEMEMVTILPRQRLEGLELLGGQVEPLLPPRRASLPLWLALLLKRQRRANI 68
Query: 72 RPPQWMSIENLTKVLEGERE-----------------------DRGT------------- 95
PP W+ E L+ +LE E + +RG
Sbjct: 69 LPPAWLHPEPLSLILEIETQHHEYENAFSPPPPLPGQPSVRDRNRGQRPIARARHTPDGQ 128
Query: 96 --FQAVPF--------------------HYIEISRLLFDHARDDIPDIYMVRSLIEDIRD 133
F + PF H++E+ +L D A DD+ D +R L++++R+
Sbjct: 129 RYFPSPPFLPQNIAQDNAHPSEPPSLPYHWLEVGNMLLDAASDDLVDPDQIRRLLKELRE 188
Query: 134 VRLHKIETNLE 144
VR+ KI + ++
Sbjct: 189 VRMAKIRSGVD 199
>sp|Q8SV74|PSF2_ENCCU Probable DNA replication complex GINS protein PSF2
OS=Encephalitozoon cuniculi (strain GB-M1) GN=ECU06_1410
PE=3 SV=1
Length = 175
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
Query: 12 FSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTI 71
SP E+ +A +ELVEI P + L + + P P ++PL+ A LKK C I
Sbjct: 3 ISPEEILHIAYEELVEIEPMTSIPELRLLERTYPPLMPLDIARIPLYAALLLKKSNMCKI 62
Query: 72 RPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDI 131
R P ++ +E+L ++ E E + + ++ ++ L ++ ++ I + ++E I
Sbjct: 63 RLPSYLQLESLKMSMDVEIEKADEYSCIHPYFFPLATELLENCY-NVESIEESKMIVEKI 121
Query: 132 RDVRLHK 138
+++RL K
Sbjct: 122 KEIRLAK 128
>sp|Q7SAA9|PSF2_NEUCR DNA replication complex GINS protein psf-2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=psf-2 PE=3 SV=1
Length = 273
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 16 EVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQ 75
EV F+AE E+V +VP R+D ++ + G P ++PLWLA LKK+ + I PP
Sbjct: 13 EVAFLAEMEMVTVVPRQRLDSIDLLGGKTPQLRPPHRAQLPLWLALLLKKQRRANIVPPA 72
Query: 76 WMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDH 113
WM +L +++ RE + +A SR L+
Sbjct: 73 WMHPASLAEII--HRETKEDPEAFSPPPPPPSRALYSQ 108
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 99 VPFHYIEISRLLFDHARDDIPD-IYMVRSLIEDIRDVRLHKIETN---LEKFS 147
+P+H++E++ L HA DD+P VRSL+ D+ +VR K+ ++ LE F
Sbjct: 155 LPYHWLEVAEALLTHAGDDMPAPAGEVRSLLRDLVEVRAAKMRSSTSALEGFG 207
>sp|Q1DNY1|PSF2_COCIM DNA replication complex GINS protein PSF2 OS=Coccidioides immitis
(strain RS) GN=PSF2 PE=3 SV=1
Length = 268
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 13 SPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIR 72
+P E+ F+ E E+V IVP R++ L + G P P +PLWLA LK++ + I
Sbjct: 10 TPSEITFLCEMEMVTIVPRQRLEGLELLGGPTEPLIPPRRSSLPLWLALLLKRQRRANIL 69
Query: 73 PPQWMSIENLTKVLEGE 89
PP W++ E L++ L+ E
Sbjct: 70 PPPWLNTEWLSEFLKAE 86
>sp|Q9CKN6|ASNA_PASMU Aspartate--ammonia ligase OS=Pasteurella multocida (strain Pm70)
GN=asnA PE=3 SV=1
Length = 330
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 9 VSLFSPPEVEFMAEDELVEIVPNMR-MDPLNFICGDFGPFY 48
++ F P +++F+ +ELV+ PNM + N IC ++G +
Sbjct: 157 LATFLPKDIQFVHSEELVQRFPNMNDKERENAICKEYGAVF 197
>sp|B1ZSW8|SYD_OPITP Aspartate--tRNA ligase OS=Opitutus terrae (strain DSM 11246 /
PB90-1) GN=aspS PE=3 SV=1
Length = 595
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 12 FSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPV--KVPLWLAAALKKRGKC 69
+ P V+F E E E+ + ++ + I P+ + ++ L AA L+KRGK
Sbjct: 365 WKSPIVKFFTEPEKAELTKRLNIEEGDIIFFAAAPWEKACAILGRLRLESAAFLQKRGKL 424
Query: 70 TIRPPQW 76
TIR W
Sbjct: 425 TIRHDDW 431
>sp|C4L191|MUTS_EXISA DNA mismatch repair protein MutS OS=Exiguobacterium sp. (strain
ATCC BAA-1283 / AT1b) GN=mutS PE=3 SV=1
Length = 842
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 115 RDDIPDIYMVRSLIEDIRDVRLHKIETNLEKFSATS 150
RD + + VRSL++ ++ RL +IE NL+ F S
Sbjct: 351 RDTLERMPSVRSLLQTVKADRLQQIEQNLDSFETLS 386
>sp|Q083H4|DSBB_SHEFN Disulfide bond formation protein B OS=Shewanella frigidimarina
(strain NCIMB 400) GN=dsbB PE=3 SV=1
Length = 169
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 47 FYPQIPVKVPL--WLAAALKKRGKCTIRPPQWMSIENLTKVLEG 88
FYP+ P +PL WL + G C+ P W+S+ ++ G
Sbjct: 106 FYPEFPSFMPLDTWLPSVFSPTGMCSDSPWSWLSVSMAQWMMLG 149
>sp|A6T2D5|OBG_JANMA GTPase obg OS=Janthinobacterium sp. (strain Marseille) GN=obg PE=3
SV=1
Length = 369
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Query: 43 DFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFH 102
D PF PVK + LKK + P+W+ + L V E ER+ R F
Sbjct: 246 DLAPFDNVDPVKEAKAIVKELKKYDEALFDKPRWLVLNKLDMVPEEERKKRVKDFIKRFG 305
Query: 103 Y----IEISRLLFDHARDDIPDIY 122
+ EIS L + D + +IY
Sbjct: 306 WKGPVFEISALTREGCSDLVTEIY 329
>sp|O70212|5HT3A_CAVPO 5-hydroxytryptamine receptor 3A OS=Cavia porcellus GN=HTR3A PE=1
SV=1
Length = 490
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 53 VKVPLW-LAAALKKRGKCTIRPPQWMSIENLTKVLE-GEREDRGTFQAVPFHYIEISRLL 110
+ + LW L +K + +W + LT+ LE +RE RG+F + F+ + R L
Sbjct: 190 INISLWRLPEKVKSDKSVFMNQGEWELLGVLTEFLEFSDRESRGSFAEMKFYVVIRRRPL 249
Query: 111 FDHARDDIPDIYMV 124
F +P I+++
Sbjct: 250 FYAVTLLLPSIFLM 263
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,270,793
Number of Sequences: 539616
Number of extensions: 2358804
Number of successful extensions: 4673
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4625
Number of HSP's gapped (non-prelim): 43
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)