Query 048544
Match_columns 153
No_of_seqs 110 out of 212
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 18:15:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048544.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048544hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e9x_B DNA replication complex 100.0 3.6E-58 1.2E-62 365.6 14.4 136 12-148 1-137 (185)
2 3anw_B GINS23, putative unchar 99.1 3.7E-10 1.3E-14 88.5 8.6 101 42-143 21-136 (171)
3 2e9x_C GINS complex subunit 3; 98.9 1.1E-08 3.6E-13 82.7 12.3 122 18-144 27-157 (219)
4 3anw_A GINS51, putative unchar 97.6 0.0001 3.4E-09 57.9 5.9 66 77-143 1-82 (188)
5 3twe_A Alpha4H; unknown functi 68.1 7.8 0.00027 20.8 3.4 24 120-144 2-25 (27)
6 3anw_A GINS51, putative unchar 60.9 5.5 0.00019 30.6 2.8 42 31-72 142-184 (188)
7 3u5c_T 40S ribosomal protein S 53.8 4.2 0.00014 30.6 1.1 20 59-80 18-37 (144)
8 3iz6_S 40S ribosomal protein S 48.4 4.5 0.00015 30.5 0.4 19 59-79 21-39 (146)
9 2l9a_X LAK160-P12; cationic, p 46.8 7.9 0.00027 20.6 1.1 13 55-67 11-23 (26)
10 3sjd_D Golgi to ER traffic pro 44.6 17 0.00057 22.2 2.5 12 131-142 23-34 (46)
11 1zt2_A DNA primase small subun 40.6 15 0.0005 30.9 2.5 48 23-72 279-326 (330)
12 2v7f_A RPS19, RPS19E SSU ribos 39.9 10 0.00036 28.2 1.3 20 58-79 15-34 (150)
13 3e3x_A BIPA; MCSG,PSI2, struct 34.8 12 0.0004 31.5 1.0 28 11-38 289-318 (332)
14 2xzm_T RPS19E; ribosome, trans 28.5 12 0.00041 28.5 -0.0 18 59-78 22-39 (155)
15 3plt_A Sphingolipid long chain 28.0 26 0.00089 28.2 1.9 68 80-147 23-124 (234)
16 3zs9_C Golgi to ER traffic pro 27.9 18 0.00062 21.3 0.7 12 131-142 13-24 (38)
17 1vh6_A Flagellar protein FLIS; 27.7 45 0.0015 24.5 3.1 53 79-134 63-116 (145)
18 3fyf_A Protein BVU-3222; struc 23.9 35 0.0012 26.4 1.9 27 24-51 145-171 (176)
19 3arc_J Photosystem II reaction 21.5 23 0.00079 21.0 0.3 8 53-60 6-13 (40)
No 1
>2e9x_B DNA replication complex GINS protein PSF2; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.2 d.344.1.2 PDB: 2eho_C* 2q9q_A*
Probab=100.00 E-value=3.6e-58 Score=365.57 Aligned_cols=136 Identities=45% Similarity=0.905 Sum_probs=133.4
Q ss_pred CChhhhhhhhcCceeEEeeCCCCCccceeccccccCCCCCcchhhHHHHHHhcccCCceEeCCCCCCHHHHHHHHHHHhh
Q 048544 12 FSPPEVEFMAEDELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGERE 91 (153)
Q Consensus 12 ~~p~E~eFlae~e~i~IiP~f~~~~~~lI~g~~GPF~p~~~~~VPLWlAl~Lkk~~~C~I~pP~Wl~ve~L~~~l~~E~~ 91 (153)
|||+|++|+||+++|+|+|||++++++||+|+||||+||.+++||||||++||++++|+|+||+||++++|++++++|++
T Consensus 1 ~~p~EieFlae~e~I~IvP~f~~~~~~lI~g~~gPf~p~~~~~VPLWLAl~Lkk~~kc~I~~P~Wl~~e~L~~~~~~E~~ 80 (185)
T 2e9x_B 1 MDAAEVEFLAEKELVTIIPNFSLDKIYLIGGDLGPFNPGLPVEVPLWLAINLKQRQKCRLLPPEWMDVEKLEKMRDHERK 80 (185)
T ss_dssp CCHHHHHHHHTTSEEEEEESSCBCCEEETTEEECCBCTTCCEEEEHHHHHHHHHTTSEEECCCTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCeEEEEeCCCCCceeeeecccCCcCCCCcceeHHHHHHHHHhCCceEEECCcccCHHHHHHHHHHHhc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCcccCCc-hHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 048544 92 DRGTFQAVPF-HYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLEKFSA 148 (153)
Q Consensus 92 ~~~~f~~LP~-~y~Eia~lLl~~a~dDi~~~~~ir~Li~DI~~iR~~Klr~gl~~~~~ 148 (153)
+ +.|++||+ ||+|+|++||++|+||++++++||+||+|||++|++|+|+|++.+++
T Consensus 81 ~-~~f~~lP~~~~~Eia~lLl~~a~dDi~~~~~ir~Li~DI~~vR~~Kir~~l~~l~~ 137 (185)
T 2e9x_B 81 E-ETFTPMPSPYYMELTKLLLNHASDNIPKADEIRTLVKDMWDTRIAKLRVSADSFVR 137 (185)
T ss_dssp C-SSCCCCSSTTHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-cccccCCHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 68999999 69999999999999999999999999999999999999999999975
No 2
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=99.08 E-value=3.7e-10 Score=88.53 Aligned_cols=101 Identities=22% Similarity=0.269 Sum_probs=82.1
Q ss_pred cccccCCCCCcchhhHHHHHHhcccCCceEeCCCCCCHHHHHHHHHHHhhCcCCcccCCchHHHHHHHHHhhhc------
Q 048544 42 GDFGPFYPQIPVKVPLWLAAALKKRGKCTIRPPQWMSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHAR------ 115 (153)
Q Consensus 42 g~~GPF~p~~~~~VPLWlAl~Lkk~~~C~I~pP~Wl~ve~L~~~l~~E~~~~~~f~~LP~~y~Eia~lLl~~a~------ 115 (153)
-+||+.+.|..+.||.|+|..|...|.|.|.--.=..++.|.+++.+|+++ ..+++||.+|+.-++..+....
T Consensus 21 ~~f~~~~kG~e~~lp~wlA~~L~e~g~vei~d~~~~~I~eL~~il~eEr~~-~~L~~LP~dFY~rvr~yI~~Le~ei~~~ 99 (171)
T 3anw_B 21 KPFGDWKSGDIVLVEDWKARELWEAGVVEIVDETDKIIGEIDKVIAEERES-EPLTLLPEGLYERAEFYAYYLENYVRLN 99 (171)
T ss_dssp SCCTTCCSSCEEEEEHHHHHHHHHTTSEEECCTHHHHHHHHHHHHHHHTTS-SSCCCCCTTHHHHHHHHHHHHHHHTTCC
T ss_pred hhhhhcCCCCeeeccHHHHHHHHHCCCEeeccccchHHHHHHHHHHHhhcc-CccccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999721155688999999999997 6899999999999998876432
Q ss_pred --CCCcC-------HHHHHHHHHHHHHHHHHHHHHHH
Q 048544 116 --DDIPD-------IYMVRSLIEDIRDVRLHKIETNL 143 (153)
Q Consensus 116 --dDi~~-------~~~ir~Li~DI~~iR~~Klr~gl 143 (153)
.|+.. ...++..+++|.+.|..||-+-+
T Consensus 100 ~~~d~~~~~~kl~elk~~~~~l~~L~~~Ri~KIv~la 136 (171)
T 3anw_B 100 PRESVDTINVKLTKLANLRKKLRDLKLIRFNKILKAV 136 (171)
T ss_dssp C-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24322 46777888899999999998766
No 3
>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D* 2q9q_D*
Probab=98.94 E-value=1.1e-08 Score=82.68 Aligned_cols=122 Identities=16% Similarity=0.200 Sum_probs=93.6
Q ss_pred hhhhcCceeEEeeCCCCCccc--eecc---cc-cc-CCCCCcchhhHHHHHHh--cccCCceEeCCCCCCHHHHHHHHHH
Q 048544 18 EFMAEDELVEIVPNMRMDPLN--FICG---DF-GP-FYPQIPVKVPLWLAAAL--KKRGKCTIRPPQWMSIENLTKVLEG 88 (153)
Q Consensus 18 eFlae~e~i~IiP~f~~~~~~--lI~g---~~-GP-F~p~~~~~VPLWlAl~L--kk~~~C~I~pP~Wl~ve~L~~~l~~ 88 (153)
.+||++|.|..+.+...+.+. ++.+ .- .. ..+|.++++|+|||..| .+++.|+|..|+-++....+. ++.
T Consensus 27 dILa~~ekVpC~f~~~~~~lG~~~Ld~~a~~~~~d~l~~G~kveLPlWLA~~L~~~~~~~v~i~~P~~y~~~~~~~-L~A 105 (219)
T 2e9x_C 27 DILMSHEKLPVRTETAMPRLGAFFLERSAGAETDNAVPQGSKLELPLWLAKGLFDNKRRILSVELPKIYQEGWRTV-FSA 105 (219)
T ss_dssp HHHHTTSEEEEEESSCBTTCGGGC---------CCCBCTTCEEEEEHHHHHHHCCSSSSSEEECCCGGGSHHHHHH-HHH
T ss_pred HHHhcCCeeeeEEeecCCCCcHhhcCCccCCCCcccCCCCCEecchHHHHHHHHHhccCceEEeCchhhhHHHHHH-Hhc
Confidence 679999999999999999987 6666 34 34 88999999999999999 999999999999999875554 555
Q ss_pred HhhCcCCcccCCchHHHHHHHHHhhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 048544 89 EREDRGTFQAVPFHYIEISRLLFDHARDDIPDIYMVRSLIEDIRDVRLHKIETNLE 144 (153)
Q Consensus 89 E~~~~~~f~~LP~~y~Eia~lLl~~a~dDi~~~~~ir~Li~DI~~iR~~Klr~gl~ 144 (153)
+-.. -.+..+.+||++.+..|+.. +.. +..++...+.+....|..+|.....
T Consensus 106 dp~~-VdL~~~~p~fY~lG~~L~~l--~~~-ed~~L~~~L~~tf~~R~~~I~d~a~ 157 (219)
T 2e9x_C 106 DPNV-VDLHKMGPHFYGFGSQLLHF--DSP-ENADISQSLLQTFIGRFRRIMDSSQ 157 (219)
T ss_dssp CGGG-SCTTTSCSSHHHHHHHGGGG--CCT-THHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcE-EecccCCchHHHHHHHHHhc--ccc-chHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5333 35788889999999998876 222 2246666677777788888876654
No 4
>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=97.58 E-value=0.0001 Score=57.89 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHhhCcCCcccCCchHHHHHHHHHhhhcCC--------C--c------CHHHHHHHHHHHHHHHHHHHH
Q 048544 77 MSIENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHARDD--------I--P------DIYMVRSLIEDIRDVRLHKIE 140 (153)
Q Consensus 77 l~ve~L~~~l~~E~~~~~~f~~LP~~y~Eia~lLl~~a~dD--------i--~------~~~~ir~Li~DI~~iR~~Klr 140 (153)
|+++.|.+++.+|+++ ..++++|..|++-++-++....+. . . +...++.++++|.++|..||-
T Consensus 1 mdi~eL~~il~~Er~s-~~L~~i~~~FY~~v~~yI~~L~~~~~~~~~~~~~~e~~~~~~el~~~~~~~~~i~~~Rl~KIv 79 (188)
T 3anw_A 1 MDIVKLRELLEAELSS-TDLNELDEDFYVEFDSLIKALKLSAESSRERGEDVEERLYLAQLKIAESLMKEIIKLRLHKIV 79 (188)
T ss_dssp CCHHHHHHHHHHHHTC-SSCCCCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcc-CcCCCCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999998 689999987777777776643221 1 1 234588899999999999998
Q ss_pred HHH
Q 048544 141 TNL 143 (153)
Q Consensus 141 ~gl 143 (153)
+..
T Consensus 80 ~~a 82 (188)
T 3anw_A 80 DLA 82 (188)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 5
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=68.14 E-value=7.8 Score=20.80 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 048544 120 DIYMVRSLIEDIRDVRLHKIETNLE 144 (153)
Q Consensus 120 ~~~~ir~Li~DI~~iR~~Klr~gl~ 144 (153)
+++++..-++|+.+ |.+|+|+.+.
T Consensus 2 nadelykeledlqe-rlrklrkklr 25 (27)
T 3twe_A 2 NADELYKELEDLQE-RLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 45677777788765 7888887764
No 6
>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=60.86 E-value=5.5 Score=30.63 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=32.8
Q ss_pred CCCCCccceecc-ccccCCCCCcchhhHHHHHHhcccCCceEe
Q 048544 31 NMRMDPLNFICG-DFGPFYPQIPVKVPLWLAAALKKRGKCTIR 72 (153)
Q Consensus 31 ~f~~~~~~lI~g-~~GPF~p~~~~~VPLWlAl~Lkk~~~C~I~ 72 (153)
.-..+.+.=..| .||||+.|--+.+|-=.|..|-+++.+.-+
T Consensus 142 ~~d~p~i~~~d~r~Y~Pl~~~Dvv~LP~~~A~~L~kr~~a~~i 184 (188)
T 3anw_A 142 QIDLPAVLGPDMKEYGPFMAGDMAIIPTVIGRALVEREAARRV 184 (188)
T ss_dssp CSCBCCEECTTSCEECCBCTTCEEEEEHHHHHHHHTTTSEEEC
T ss_pred EeCCCceecCCcCcccCCCcccEEeecHHHHHHHHhCCCeEEe
Confidence 444444433333 689999999999999999999999998754
No 7
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=53.80 E-value=4.2 Score=30.60 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=16.9
Q ss_pred HHHHhcccCCceEeCCCCCCHH
Q 048544 59 LAAALKKRGKCTIRPPQWMSIE 80 (153)
Q Consensus 59 lAl~Lkk~~~C~I~pP~Wl~ve 80 (153)
+|-+||++++ |.+|+|.++-
T Consensus 18 ~A~~LK~~gk--i~~P~W~d~v 37 (144)
T 3u5c_T 18 YASFLQRQGK--LEVPGYVDIV 37 (144)
T ss_dssp HHHHHHHHCC--CCCTTTTTSC
T ss_pred HHHHHHHcCC--CCCCchHhHh
Confidence 6899999977 8899997753
No 8
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=48.36 E-value=4.5 Score=30.54 Aligned_cols=19 Identities=42% Similarity=0.919 Sum_probs=15.9
Q ss_pred HHHHhcccCCceEeCCCCCCH
Q 048544 59 LAAALKKRGKCTIRPPQWMSI 79 (153)
Q Consensus 59 lAl~Lkk~~~C~I~pP~Wl~v 79 (153)
+|-+||+.++ |.+|+|.++
T Consensus 21 ~A~~LK~~gk--i~~P~W~d~ 39 (146)
T 3iz6_S 21 YSAHLKRSGK--MELPEWVDI 39 (146)
T ss_dssp HHTTGGGSSC--CCCTTTGGG
T ss_pred HHHHHHHcCC--CCCCchHHH
Confidence 6888998877 889999764
No 9
>2l9a_X LAK160-P12; cationic, proline, ampiphatic, de novo protein, antimicrobia; NMR {Synthetic construct}
Probab=46.79 E-value=7.9 Score=20.60 Aligned_cols=13 Identities=54% Similarity=0.874 Sum_probs=10.2
Q ss_pred hhHHHHHHhcccC
Q 048544 55 VPLWLAAALKKRG 67 (153)
Q Consensus 55 VPLWlAl~Lkk~~ 67 (153)
-|||-|+.||-++
T Consensus 11 aplwkalalklkk 23 (26)
T 2l9a_X 11 APLWKALALKLKK 23 (26)
T ss_dssp CTHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHh
Confidence 5999999887554
No 10
>3sjd_D Golgi to ER traffic protein 2; ATPase, receptor complex, TA-protein biogenesis, GET pathway hydrolase-transport protein complex; HET: ADP; 4.60A {Saccharomyces cerevisiae}
Probab=44.60 E-value=17 Score=22.20 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHH
Q 048544 131 IRDVRLHKIETN 142 (153)
Q Consensus 131 I~~iR~~Klr~g 142 (153)
+++.|++|+++|
T Consensus 23 rRERR~aKi~~G 34 (46)
T 3sjd_D 23 LRERRQKKFSNG 34 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc
Confidence 489999999998
No 11
>1zt2_A DNA primase small subunit; heterodimeric complex, replication, transferase; HET: DNA; 3.33A {Sulfolobus solfataricus} SCOP: d.264.1.1
Probab=40.65 E-value=15 Score=30.93 Aligned_cols=48 Identities=13% Similarity=0.214 Sum_probs=41.0
Q ss_pred CceeEEeeCCCCCccceeccccccCCCCCcchhhHHHHHHhcccCCceEe
Q 048544 23 DELVEIVPNMRMDPLNFICGDFGPFYPQIPVKVPLWLAAALKKRGKCTIR 72 (153)
Q Consensus 23 ~e~i~IiP~f~~~~~~lI~g~~GPF~p~~~~~VPLWlAl~Lkk~~~C~I~ 72 (153)
+..|+|.++... ++.+.+..| ....|...+||-.+|+.|--+|.+.+.
T Consensus 279 ~~~~~v~~~~~~-~~~~~g~~~-~~~~g~~~~~p~~~avyl~~~g~a~~~ 326 (330)
T 1zt2_A 279 TGYTIFLPYITI-ETEVLGSII-KLNRGIPIKIKSSIGIYLHLRNLGEVK 326 (330)
T ss_dssp CSEEEEEESSCE-EEECSSSEE-EECTTCCEEEEHHHHHHHHHTTSEEEE
T ss_pred CCceEEEEccce-eEEECCeEe-ccCCCcceEecHHHHHHHHhcCcEEEE
Confidence 778999999877 777777777 557899999999999999999988764
No 12
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=39.88 E-value=10 Score=28.17 Aligned_cols=20 Identities=35% Similarity=0.765 Sum_probs=16.8
Q ss_pred HHHHHhcccCCceEeCCCCCCH
Q 048544 58 WLAAALKKRGKCTIRPPQWMSI 79 (153)
Q Consensus 58 WlAl~Lkk~~~C~I~pP~Wl~v 79 (153)
=+|.+||+.++ |.+|+|..+
T Consensus 15 ~~a~~lk~~~k--i~~P~w~~~ 34 (150)
T 2v7f_A 15 RVAQRLKEIPE--IKPPEWAPF 34 (150)
T ss_dssp HHHHHHTTCTT--CCCCSCGGG
T ss_pred HHHHHHHhcCC--CCCcchhhh
Confidence 47999998888 779999876
No 13
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=34.75 E-value=12 Score=31.55 Aligned_cols=28 Identities=32% Similarity=0.682 Sum_probs=21.1
Q ss_pred CCChhh-hhhhhcCceeEEee-CCCCCccc
Q 048544 11 LFSPPE-VEFMAEDELVEIVP-NMRMDPLN 38 (153)
Q Consensus 11 ~~~p~E-~eFlae~e~i~IiP-~f~~~~~~ 38 (153)
.||-+| ++|+++||+|+|.| ++++.|..
T Consensus 289 ~~~le~~~~~i~~de~vevtp~~ir~rk~~ 318 (332)
T 3e3x_A 289 VMTLEQALEFIDDDELVEVTPESIRIRKXF 318 (332)
T ss_dssp CCCHHHHHHHCCTTEEEEECSSCEEEEESS
T ss_pred ccCHHHHHhhhcCCeeEEEcCceEEEEecc
Confidence 456565 79999999999999 45555443
No 14
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=28.49 E-value=12 Score=28.46 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.1
Q ss_pred HHHHhcccCCceEeCCCCCC
Q 048544 59 LAAALKKRGKCTIRPPQWMS 78 (153)
Q Consensus 59 lAl~Lkk~~~C~I~pP~Wl~ 78 (153)
+|-+||+.++ |.+|+|.+
T Consensus 22 ~A~~LKk~gk--i~~P~W~d 39 (155)
T 2xzm_T 22 YASHLKKANK--LSIPEFTQ 39 (155)
T ss_dssp HHHHTTSSCC--SCCCHHHH
T ss_pred HHHHHHhcCC--CCCCchHh
Confidence 6889998877 89999954
No 15
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=28.01 E-value=26 Score=28.20 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhCcCCcccCCchHHHHHHHHHhhh---cCCCcCH----------------------HHHHHHHHHHHHH
Q 048544 80 ENLTKVLEGEREDRGTFQAVPFHYIEISRLLFDHA---RDDIPDI----------------------YMVRSLIEDIRDV 134 (153)
Q Consensus 80 e~L~~~l~~E~~~~~~f~~LP~~y~Eia~lLl~~a---~dDi~~~----------------------~~ir~Li~DI~~i 134 (153)
..|.+++..|+.-...|..+-.-+..+|+-|..-. .||+.|+ +..|..+|+|+++
T Consensus 23 r~L~~LIk~EK~vi~s~e~~are~~~~A~~Ls~WG~~edddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~ 102 (234)
T 3plt_A 23 RKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADNDDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNI 102 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999998866667777777888888877543 2444442 4567777777776
Q ss_pred ---------HHHHHHHHHHHhh
Q 048544 135 ---------RLHKIETNLEKFS 147 (153)
Q Consensus 135 ---------R~~Klr~gl~~~~ 147 (153)
|.+|+...+..+.
T Consensus 103 E~svqp~R~~R~~l~~~I~kLk 124 (234)
T 3plt_A 103 EASVQPSRDRKEKITDEIAHLK 124 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHh
Confidence 4456666555543
No 16
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=27.90 E-value=18 Score=21.27 Aligned_cols=12 Identities=25% Similarity=0.479 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 048544 131 IRDVRLHKIETN 142 (153)
Q Consensus 131 I~~iR~~Klr~g 142 (153)
+++.|++|+.+|
T Consensus 13 rRERR~aKi~~G 24 (38)
T 3zs9_C 13 LRERRQKKFSNG 24 (38)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHcc
Confidence 588999999987
No 17
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=27.72 E-value=45 Score=24.47 Aligned_cols=53 Identities=23% Similarity=0.259 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhCcCCcccCCchHHHHHHHHH-hhhcCCCcCHHHHHHHHHHHHHH
Q 048544 79 IENLTKVLEGEREDRGTFQAVPFHYIEISRLLF-DHARDDIPDIYMVRSLIEDIRDV 134 (153)
Q Consensus 79 ve~L~~~l~~E~~~~~~f~~LP~~y~Eia~lLl-~~a~dDi~~~~~ir~Li~DI~~i 134 (153)
+..|...|+.|-+ --..|-.-|--+.+.|+ .+...|....++|+.++++|++.
T Consensus 63 i~eL~~sLd~ege---iA~nL~~LY~y~~~~L~~Ani~~D~~~ldev~~ll~~Lrea 116 (145)
T 1vh6_A 63 IQELNFTLNRNIE---LSASMGAMYDYMYRRLVQANIKNDTGMLAEVEGYVTDFRDA 116 (145)
T ss_dssp HHHHHHHHHHHHH---HTTHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchH---HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 4568888888822 22344432444444444 45678888889999999999886
No 18
>3fyf_A Protein BVU-3222; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=23.91 E-value=35 Score=26.37 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=21.9
Q ss_pred ceeEEeeCCCCCccceeccccccCCCCC
Q 048544 24 ELVEIVPNMRMDPLNFICGDFGPFYPQI 51 (153)
Q Consensus 24 e~i~IiP~f~~~~~~lI~g~~GPF~p~~ 51 (153)
..|+|.|+|+...|.| .|++=|+..|.
T Consensus 145 asv~V~pnfN~n~itf-~G~L~p~~~~~ 171 (176)
T 3fyf_A 145 ASVTINPNFSGNTLTM-NGYLVPYNEGH 171 (176)
T ss_dssp EEEEEEETTCCCCEEE-EEEEEETTTC-
T ss_pred EEEEEccccCCCceEE-EEEEEeccCCc
Confidence 5799999999999987 67777877663
No 19
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=21.53 E-value=23 Score=21.02 Aligned_cols=8 Identities=38% Similarity=1.298 Sum_probs=6.2
Q ss_pred chhhHHHH
Q 048544 53 VKVPLWLA 60 (153)
Q Consensus 53 ~~VPLWlA 60 (153)
-++|||+.
T Consensus 6 GRiPLWlv 13 (40)
T 3arc_J 6 GRIPLWIV 13 (40)
T ss_dssp TSSCHHHH
T ss_pred CcccEEee
Confidence 47899984
Done!