Your job contains 1 sequence.
>048546
MPRIAMEEFSPRISVDSPRHSGALSLMIGGFSRKNFSYNKLPEQPLKLSVRKLDGSCFDI
EVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGI
RDGDQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 048546
(125 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2145502 - symbol:AT5G25340 "AT5G25340" species... 351 4.7e-32 1
TAIR|locus:2116495 - symbol:AT4G32270 "AT4G32270" species... 349 7.7e-32 1
TAIR|locus:2016244 - symbol:AT1G80060 "AT1G80060" species... 289 1.8e-25 1
TAIR|locus:2077447 - symbol:AT3G07860 "AT3G07860" species... 166 1.9e-12 1
ZFIN|ZDB-GENE-050417-179 - symbol:zgc:112000 "zgc:112000"... 129 1.6e-08 1
UNIPROTKB|Q9BV90 - symbol:SNRNP25 "U11/U12 small nuclear ... 116 3.8e-07 1
MGI|MGI:1925622 - symbol:Snrnp25 "small nuclear ribonucle... 116 3.8e-07 1
UNIPROTKB|Q3ZBQ4 - symbol:SNRNP25 "U11/U12 small nuclear ... 114 6.1e-07 1
>TAIR|locus:2145502 [details] [associations]
symbol:AT5G25340 "AT5G25340" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] EMBL:CP002688 GenomeReviews:BA000015_GR
UniGene:At.19865 UniGene:At.72267 EMBL:BT005530 EMBL:AK118230
IPI:IPI00533362 RefSeq:NP_197916.1 ProteinModelPortal:Q8GXI1
SMR:Q8GXI1 DNASU:832606 EnsemblPlants:AT5G25340.1 GeneID:832606
KEGG:ath:AT5G25340 TAIR:At5g25340 eggNOG:NOG273177
HOGENOM:HOG000015150 InParanoid:Q8GXI1 OMA:SKISWSH PhylomeDB:Q8GXI1
ProtClustDB:CLSN2916406 ArrayExpress:Q8GXI1 Genevestigator:Q8GXI1
Uniprot:Q8GXI1
Length = 208
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 59/98 (60%), Positives = 78/98 (79%)
Query: 28 IGGFSRKNFSYNKLPEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGP 87
+G F R+ FSY+KLP +P++LSV KLDGS FD+ V+ +AT+ +L+ A+E AFSH+PK GP
Sbjct: 1 MGSFHRRTFSYDKLPNEPIRLSVLKLDGSSFDVYVLTSATVGDLKVAIETAFSHVPKKGP 60
Query: 88 GKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125
KISW HVWGHFCLC+ GQKLI + D I YG++DGD+
Sbjct: 61 SKISWSHVWGHFCLCFGGQKLITDTDCIGNYGMKDGDE 98
>TAIR|locus:2116495 [details] [associations]
symbol:AT4G32270 "AT4G32270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005886 "plasma membrane" evidence=IDA]
GO:GO:0005886 EMBL:CP002687 GenomeReviews:CT486007_GR
HOGENOM:HOG000015150 EMBL:AK117743 IPI:IPI00536154
RefSeq:NP_194954.2 UniGene:At.46745 ProteinModelPortal:Q8GYB5
SMR:Q8GYB5 EnsemblPlants:AT4G32270.1 GeneID:829360
KEGG:ath:AT4G32270 TAIR:At4g32270 OMA:RFIRHIS PhylomeDB:Q8GYB5
ProtClustDB:CLSN2699109 Genevestigator:Q8GYB5 Uniprot:Q8GYB5
Length = 239
Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
Identities = 66/113 (58%), Positives = 88/113 (77%)
Query: 18 PRHSGALSL----MIGGFSRK-NFSYNKLPEQPLKLSVRKLDGSCFDIEVMKTATIAELR 72
PR S A SL +I G R+ +F+YN++PE+P+KL+V KLDGS F I+V+KTAT+ EL+
Sbjct: 5 PRRSLAASLSPLRLIDGLPRRRSFNYNQMPEEPIKLTVLKLDGSSFGIQVLKTATVGELK 64
Query: 73 QAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125
AVEAAFSH+P +GPGKISWPHVWG FCL Y ++LI E++ + +GI+DGDQ
Sbjct: 65 MAVEAAFSHLPISGPGKISWPHVWGQFCLSYEDKRLINESEYLTEFGIKDGDQ 117
>TAIR|locus:2016244 [details] [associations]
symbol:AT1G80060 "AT1G80060" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] InterPro:IPR000626 SMART:SM00213
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0016301 EMBL:BT015934
EMBL:BT020549 IPI:IPI00517748 RefSeq:NP_178123.1 UniGene:At.33993
ProteinModelPortal:Q5XEN2 SMR:Q5XEN2 EnsemblPlants:AT1G80060.1
GeneID:844346 KEGG:ath:AT1G80060 TAIR:At1g80060 eggNOG:NOG331097
HOGENOM:HOG000140258 InParanoid:Q5XEN2 OMA:KTSIRYL PhylomeDB:Q5XEN2
ProtClustDB:CLSN2681882 Genevestigator:Q5XEN2 Uniprot:Q5XEN2
Length = 243
Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
Identities = 58/114 (50%), Positives = 76/114 (66%)
Query: 14 SVDSPRHSGALSLMIGG-FSRKNFSYNKLPEQP-LKLSVRKLDGSCFDIEVMKTATIAEL 71
S+ PR + +L GG S + SY KLP Q +KLSV KL+GS FD+EV K ++AEL
Sbjct: 19 SLIDPRFLSSFALNDGGSISGRRSSYLKLPPQGRIKLSVVKLNGSLFDVEVAKDCSVAEL 78
Query: 72 RQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125
++AVE F+ P G G ISW HVWGHFCLCY Q+L+ + +I+Y G+ DGDQ
Sbjct: 79 KRAVEQVFTISPLEGHGMISWSHVWGHFCLCYRDQRLVNDKTSIRYLGLNDGDQ 132
>TAIR|locus:2077447 [details] [associations]
symbol:AT3G07860 "AT3G07860" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0006626 "protein targeting to
mitochondrion" evidence=RCA] EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003676 GO:GO:0030529
eggNOG:NOG69365 KO:K13153 OMA:SWRYVWR EMBL:BT002826 EMBL:BT014863
IPI:IPI00521425 RefSeq:NP_187443.2 UniGene:At.40289
ProteinModelPortal:Q84WS8 EnsemblPlants:AT3G07860.1 GeneID:819977
KEGG:ath:AT3G07860 TAIR:At3g07860 InParanoid:Q84WS8
PhylomeDB:Q84WS8 ProtClustDB:CLSN2690777 ArrayExpress:Q84WS8
Genevestigator:Q84WS8 Uniprot:Q84WS8
Length = 165
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGK--ISWPHVWGHFCLCY 103
++LSV KLDGS D+ VM +AT+ +L+ ++ + M + G ISW HVW +FCL
Sbjct: 52 MRLSVVKLDGSSLDVAVMNSATLKDLKLLIKKKVNEMEQANMGHRHISWKHVWSNFCLSC 111
Query: 104 NGQKLICENDNIKYYGIRDGDQ 125
N +KL+ +N ++ GIR+ Q
Sbjct: 112 NNEKLLDDNAVLQDVGIRNNSQ 133
>ZFIN|ZDB-GENE-050417-179 [details] [associations]
symbol:zgc:112000 "zgc:112000" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
ZFIN:ZDB-GENE-050417-179 InterPro:IPR019955 PROSITE:PS50053
eggNOG:NOG69365 GeneTree:ENSGT00390000002628 HOGENOM:HOG000232002
HOVERGEN:HBG054397 KO:K13153 OMA:SWRYVWR OrthoDB:EOG43TZWN
EMBL:CU463855 EMBL:BC093151 IPI:IPI00511365 RefSeq:NP_001017690.1
UniGene:Dr.77390 SMR:Q567J5 Ensembl:ENSDART00000006783
GeneID:550385 KEGG:dre:550385 InParanoid:Q567J5 NextBio:20879636
Uniprot:Q567J5
Length = 173
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEA--AFSHMPKTGPGKISWPHVWGHFCL 101
Q + + V K DG I V+++AT+ +L++A+ + G +SW +VW F L
Sbjct: 80 QAMTVRVCKADGEVMPIVVVQSATVLDLKKAIRRYMELKQQREGGVKHVSWKYVWRTFHL 139
Query: 102 CYNGQKLICENDNIKYYGIRDGDQ 125
+NG+KL + +K YG+R+ D+
Sbjct: 140 VFNGEKLEDDRRKLKDYGVRNRDE 163
>UNIPROTKB|Q9BV90 [details] [associations]
symbol:SNRNP25 "U11/U12 small nuclear ribonucleoprotein 25
kDa protein" species:9606 "Homo sapiens" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IC] GO:GO:0008380 EMBL:AE006462
GO:GO:0006397 InterPro:IPR019955 PROSITE:PS50053 GO:GO:0005689
EMBL:DQ431198 CTD:79622 eggNOG:NOG69365 HOGENOM:HOG000232002
HOVERGEN:HBG054397 KO:K13153 OMA:SWRYVWR OrthoDB:EOG43TZWN
EMBL:AK026593 EMBL:BC001381 EMBL:BC009179 EMBL:BK005201
IPI:IPI00550775 RefSeq:NP_078847.1 UniGene:Hs.15277
ProteinModelPortal:Q9BV90 SMR:Q9BV90 STRING:Q9BV90 DMDM:68052377
PRIDE:Q9BV90 DNASU:79622 Ensembl:ENST00000383018 GeneID:79622
KEGG:hsa:79622 UCSC:uc002cfj.4 GeneCards:GC16P000103
HGNC:HGNC:14161 neXtProt:NX_Q9BV90 PharmGKB:PA164726099
InParanoid:Q9BV90 PhylomeDB:Q9BV90 ChiTaRS:SNRNP25 GenomeRNAi:79622
NextBio:68693 ArrayExpress:Q9BV90 Bgee:Q9BV90 CleanEx:HS_SNRNP25
Genevestigator:Q9BV90 GermOnline:ENSG00000161981 Uniprot:Q9BV90
Length = 132
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVE--AAFSHMPKTGPGKISWPHVWGHFCL 101
Q + + V K+DG + V+++AT+ +L++A++ + G ISW +VW + L
Sbjct: 39 QAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHL 98
Query: 102 CYNGQKLICENDNIKYYGIRDGDQ 125
G+KL + ++ YGIR+ D+
Sbjct: 99 TSAGEKLTEDRKKLRDYGIRNRDE 122
>MGI|MGI:1925622 [details] [associations]
symbol:Snrnp25 "small nuclear ribonucleoprotein 25
(U11/U12)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] MGI:MGI:1925622 GO:GO:0008380 GO:GO:0006397
PROSITE:PS50053 GO:GO:0005689 EMBL:AY016021 CTD:79622
eggNOG:NOG69365 GeneTree:ENSGT00390000002628 HOGENOM:HOG000232002
HOVERGEN:HBG054397 KO:K13153 OMA:SWRYVWR OrthoDB:EOG43TZWN
EMBL:AK019452 EMBL:BC028766 IPI:IPI00314633 RefSeq:NP_084369.2
UniGene:Mm.29952 PDB:1V2Y PDBsum:1V2Y ProteinModelPortal:Q8VIK1
SMR:Q8VIK1 STRING:Q8VIK1 PRIDE:Q8VIK1 Ensembl:ENSMUST00000039601
GeneID:78372 KEGG:mmu:78372 InParanoid:Q8VIK1
EvolutionaryTrace:Q8VIK1 NextBio:348757 Bgee:Q8VIK1
Genevestigator:Q8VIK1 GermOnline:ENSMUSG00000040767 Uniprot:Q8VIK1
Length = 123
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVE--AAFSHMPKTGPGKISWPHVWGHFCL 101
Q + + V K+DG + V++ AT+ +L++A++ + G ISW +VW + L
Sbjct: 30 QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHL 89
Query: 102 CYNGQKLICENDNIKYYGIRDGDQ 125
G+KL + ++ YGIR+ D+
Sbjct: 90 TSAGEKLTEDRKKLRDYGIRNRDE 113
>UNIPROTKB|Q3ZBQ4 [details] [associations]
symbol:SNRNP25 "U11/U12 small nuclear ribonucleoprotein 25
kDa protein" species:9913 "Bos taurus" [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
GO:GO:0008380 GO:GO:0006397 PROSITE:PS50053 GO:GO:0005689
EMBL:BC103171 IPI:IPI00698585 RefSeq:NP_001160084.1
UniGene:Bt.49366 ProteinModelPortal:Q3ZBQ4 SMR:Q3ZBQ4
Ensembl:ENSBTAT00000026387 GeneID:513526 KEGG:bta:513526 CTD:79622
eggNOG:NOG69365 GeneTree:ENSGT00390000002628 HOGENOM:HOG000232002
HOVERGEN:HBG054397 InParanoid:Q3ZBQ4 KO:K13153 OMA:SWRYVWR
OrthoDB:EOG43TZWN NextBio:20870895 ArrayExpress:Q3ZBQ4
Uniprot:Q3ZBQ4
Length = 123
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVE--AAFSHMPKTGPGKISWPHVWGHFCL 101
Q + + V K+DG + V++ AT+ +L++A++ + G ISW +VW + L
Sbjct: 30 QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYHL 89
Query: 102 CYNGQKLICENDNIKYYGIRDGDQ 125
G+KL + ++ YGIR+ D+
Sbjct: 90 TSAGEKLTEDRKKLRDYGIRNRDE 113
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.434 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 125 125 0.00091 102 3 11 22 0.37 31
29 0.39 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 589 (63 KB)
Total size of DFA: 140 KB (2086 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.37u 0.11s 11.48t Elapsed: 00:00:00
Total cpu time: 11.37u 0.11s 11.48t Elapsed: 00:00:00
Start: Sat May 11 06:43:19 2013 End: Sat May 11 06:43:19 2013