BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048546
         (125 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V2Y|A Chain A, Solution Structure Of Mouse Hypothetical Gene (Riken Cdna
           3300001g02) Product Homologous To Ubiquitin Fold
          Length = 105

 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 2/82 (2%)

Query: 46  LKLSVRKLDGSCFDIEVMKTATIAELRQAVE--AAFSHMPKTGPGKISWPHVWGHFCLCY 103
           + + V K+DG    + V++ AT+ +L++A++         + G   ISW +VW  + L  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 104 NGQKLICENDNIKYYGIRDGDQ 125
            G+KL  +   ++ YGIR+ D+
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDE 89


>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like
          Domain In Human Np95ICBP90-Like Ring Finger Protein
          (Nirf)
          Length = 89

 Score = 30.0 bits (66), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 48 LSVRKLDGS--CFDIEVMKTATIAELRQAVEAAFSHMPK 84
          + VR +DGS  C   +V + ATI ELR+ V A F   P+
Sbjct: 10 IQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPE 48


>pdb|1T17|A Chain A, Solution Structure Of The 18 Kda Protein Cc1736 From
           Caulobacter Crescentus: The Northeast Structural
           Genomics Consortium Target Ccr19
          Length = 148

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 7   EEFSPRISVDSPRHSGALSLMIGGFSRKNFSYNKLPE 43
           E+F+ R+  D    S  +SL+ G F R N  +  +PE
Sbjct: 64  EKFATRVRRDKDARSIDVSLLYGPFKRLNNGWRFMPE 100


>pdb|3PHX|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
          Complex With Isg15
          Length = 79

 Score = 25.8 bits (55), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAV 75
          ++PL + VR   G     EV  T T+A L+Q V
Sbjct: 2  DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQV 34


>pdb|2KK8|A Chain A, Nmr Solution Structure Of A Putative Uncharacterized
          Protein Obtained From Arabidopsis Thaliana: Northeast
          Structural Genomics Consortium Target Ar3449a
          Length = 84

 Score = 25.8 bits (55), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMP 83
          +K  V  L+GS F++EV    T+  ++Q +E +  H+P
Sbjct: 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERS-QHIP 47


>pdb|3PSE|B Chain B, Structure Of A Viral Otu Domain Protease Bound To
           Interferon- Stimulated Gene 15 (Isg15)
          Length = 156

 Score = 25.8 bits (55), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 43  EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAV 75
           ++PL + VR   G     EV  T T+A L+Q V
Sbjct: 79  DEPLNILVRNNKGRSSTYEVRLTQTVAHLKQQV 111


>pdb|2HJ8|A Chain A, Solution Nmr Structure Of The C-Terminal Domain Of The
          Interferon Alpha-Inducible Isg15 Protein From Homo
          Sapiens. Northeast Structural Genomics Target Hr2873b
          Length = 88

 Score = 25.8 bits (55), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAV 75
          ++PL + VR   G     EV  T T+A L+Q V
Sbjct: 2  DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQV 34


>pdb|3RT3|B Chain B, Complex Of Influenza Virus Protein With Host Anti-Viral
           Factor
          Length = 159

 Score = 25.8 bits (55), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 43  EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAV 75
           ++PL + VR   G     EV  T T+A L+Q V
Sbjct: 79  DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQV 111


>pdb|3R66|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1
           N-Terminal Region From Influenza Virus B, Northeast
           Structural Genomics Consortium Target Ids Hx6481,
           Hr2873, And Or2
 pdb|3R66|D Chain D, Crystal Structure Of Human Isg15 In Complex With Ns1
           N-Terminal Region From Influenza Virus B, Northeast
           Structural Genomics Consortium Target Ids Hx6481,
           Hr2873, And Or2
          Length = 164

 Score = 25.8 bits (55), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 43  EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAV 75
           ++PL + VR   G     EV  T T+A L+Q V
Sbjct: 86  DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQV 118


>pdb|3SDL|C Chain C, Crystal Structure Of Human Isg15 In Complex With Ns1
           N-Terminal Region From Influenza B Virus, Northeast
           Structural Genomics Consortium Target Ids Hx6481,
           Hr2873, And Or2
 pdb|3SDL|D Chain D, Crystal Structure Of Human Isg15 In Complex With Ns1
           N-Terminal Region From Influenza B Virus, Northeast
           Structural Genomics Consortium Target Ids Hx6481,
           Hr2873, And Or2
          Length = 164

 Score = 25.4 bits (54), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 43  EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAV 75
           ++PL + VR   G     EV  T T+A L+Q V
Sbjct: 86  DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQV 118


>pdb|1Z2M|A Chain A, Crystal Structure Of Isg15, The Interferon-Induced
           Ubiquitin Cross Reactive Protein
          Length = 155

 Score = 25.4 bits (54), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 43  EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAV 75
           ++PL + VR   G     EV  T T+A L+Q V
Sbjct: 79  DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQV 111


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,839,790
Number of Sequences: 62578
Number of extensions: 134224
Number of successful extensions: 314
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 12
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)