BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048546
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BV90|SNR25_HUMAN U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Homo
sapiens GN=SNRNP25 PE=1 SV=1
Length = 132
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVE--AAFSHMPKTGPGKISWPHVWGHFCL 101
Q + + V K+DG + V+++AT+ +L++A++ + G ISW +VW + L
Sbjct: 39 QAMTVRVCKMDGEVMPVVVVQSATVLDLKKAIQRYVQLKQEREGGIQHISWSYVWRTYHL 98
Query: 102 CYNGQKLICENDNIKYYGIRDGDQ 125
G+KL + ++ YGIR+ D+
Sbjct: 99 TSAGEKLTEDRKKLRDYGIRNRDE 122
>sp|Q8VIK1|SNR25_MOUSE U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Mus
musculus GN=Snrnp25 PE=1 SV=1
Length = 123
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVE--AAFSHMPKTGPGKISWPHVWGHFCL 101
Q + + V K+DG + V++ AT+ +L++A++ + G ISW +VW + L
Sbjct: 30 QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHL 89
Query: 102 CYNGQKLICENDNIKYYGIRDGDQ 125
G+KL + ++ YGIR+ D+
Sbjct: 90 TSAGEKLTEDRKKLRDYGIRNRDE 113
>sp|Q3ZBQ4|SNR25_BOVIN U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Bos
taurus GN=SNRNP25 PE=2 SV=2
Length = 123
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVE--AAFSHMPKTGPGKISWPHVWGHFCL 101
Q + + V K+DG + V++ AT+ +L++A++ + G ISW +VW + L
Sbjct: 30 QAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYHL 89
Query: 102 CYNGQKLICENDNIKYYGIRDGDQ 125
G+KL + ++ YGIR+ D+
Sbjct: 90 TSAGEKLTEDRKKLRDYGIRNRDE 113
>sp|P80364|CCB23_HOMAM Crustacean calcium-binding protein 23 (Fragments) OS=Homarus
americanus PE=1 SV=1
Length = 137
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 41 LPEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFC 100
L ++ L V + D +V K + E + AVEAAF H+ KTG G ++ + G +
Sbjct: 33 LSKEELSRGVSQFGLDFSDADVNKLFSDFEKKAAVEAAFKHLDKTGDGVVTVEDIKGVYS 92
>sp|Q84L32|RD23B_ARATH Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana
GN=RAD23-2 PE=2 SV=2
Length = 368
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNG 105
+KL+V+ L GS F+I V+ T TI +++ +E + S K ++P G L +NG
Sbjct: 1 MKLTVKTLKGSHFEIRVLPTDTIMAVKKNIEDSQS--------KDNYP--CGQQLLIHNG 50
Query: 106 QKLICENDNIKYYGIRDG 123
+ L E ++ +G
Sbjct: 51 KVLKDETTLVENKVTEEG 68
>sp|Q84L33|RD23A_ARATH Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana
GN=RAD23-1 PE=2 SV=3
Length = 371
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNG 105
+KL+V+ L GS F+I V+ + TI +++ +E + GK ++P G L +NG
Sbjct: 1 MKLTVKTLKGSHFEIRVLPSDTIMAVKKNIEDS--------QGKDNYP--CGQQLLIHNG 50
Query: 106 QKLICENDNIKYYGIRDG 123
+ L E ++ +G
Sbjct: 51 KVLKDETSLVENKVTEEG 68
>sp|P80363|CCB23_ORCLI Crustacean calcium-binding protein 23 OS=Orconectes limosus PE=1
SV=1
Length = 202
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 72 RQAVEAAFSHMPKTGPGKISWPHVWGHFC 100
++AVEAAF H+ KTG G + + G +
Sbjct: 107 KKAVEAAFKHLDKTGDGVVGLEDIKGKYS 135
>sp|Q4IBK5|PPIL2_GIBZE Peptidyl-prolyl cis-trans isomerase-like 2 OS=Gibberella zeae
(strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)
GN=CYP8 PE=3 SV=1
Length = 588
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 5 AMEEFSPRISVDSPRHSGALSLMIGGFSRKNFSYNKLPEQPLKLSVRKLDGSCFDIEVM 63
+ + FSP I + R+ A + F R F++ QP K V DG+ FD+EV+
Sbjct: 17 SADAFSPSIGAGASRNQQATA----SFRRLPFNFCAASLQPFKNPVCTPDGTIFDVEVI 71
>sp|A8LMA0|YIDC_DINSH Membrane protein insertase YidC OS=Dinoroseobacter shibae (strain
DFL 12) GN=yidC PE=3 SV=1
Length = 606
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 8 EFSPRISVDSPRHSGALSLM---IGGFSRKNFSYNKLPEQPL 46
E +PR+ +D+P G++SL+ I S +N++ P+ P+
Sbjct: 75 ENAPRVQIDTPALEGSISLLGGRIDDLSLRNYNETLEPDSPI 116
>sp|Q3ZWG4|SYC_DEHSC Cysteine--tRNA ligase OS=Dehalococcoides sp. (strain CBDB1) GN=cysS
PE=3 SV=1
Length = 457
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 15/118 (12%)
Query: 8 EFSPRISVDSPRHSGALSLMIGGFSRKNFSYNKLPEQPLKLSVRKLDG----SCFDIEVM 63
++ PR + + P+ + M+ G K ++Y + L V+K+DG S +E M
Sbjct: 108 DYYPRATQEVPK----IIEMVSGLIEKGYAYA--VGGSVYLRVQKVDGYGKLSHRTLEQM 161
Query: 64 KTATIAELRQAVE--AAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYG 119
E+ + E F+ T PG+ SW WG L G + C +++Y G
Sbjct: 162 MAGARVEIDEEKEYPMDFALWKATKPGEPSWESPWG---LGRPGWHIECSAMSLRYLG 216
>sp|Q96PU4|UHRF2_HUMAN E3 ubiquitin-protein ligase UHRF2 OS=Homo sapiens GN=UHRF2 PE=1
SV=1
Length = 802
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 48 LSVRKLDGS--CFDIEVMKTATIAELRQAVEAAFSHMPK 84
+ VR +DGS C +V + ATI ELR+ V A F P+
Sbjct: 3 IQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPE 41
>sp|Q40742|RAD23_ORYSJ Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica
GN=RAD23 PE=1 SV=2
Length = 392
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVE 76
+K+SV+ L GS F IEV +A++++ +E
Sbjct: 1 MKISVKTLKGSTFQIEVDSAQKVADVKRIIE 31
>sp|A5FP90|SYC_DEHSB Cysteine--tRNA ligase OS=Dehalococcoides sp. (strain BAV1) GN=cysS
PE=3 SV=1
Length = 457
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 8 EFSPRISVDSPRHSGALSLMIGGFSRKNFSYNKLPEQPLKLSVRKLDG----SCFDIEVM 63
++ PR + + P+ + ++ G K ++Y + + L V+K+DG S +E M
Sbjct: 108 DYYPRATQEVPK----IIEIVSGLIDKGYAYA--VDGSVYLRVQKVDGYGKLSHRTLEQM 161
Query: 64 KTATIAELRQAVE--AAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYG 119
E+ + E F+ T PG+ SW WG L G + C +++Y G
Sbjct: 162 MAGARVEIDEEKEYPMDFALWKATKPGEPSWESPWG---LGRPGWHIECSAMSLRYLG 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,921,743
Number of Sequences: 539616
Number of extensions: 1708605
Number of successful extensions: 3493
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3483
Number of HSP's gapped (non-prelim): 14
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)