Query 048546
Match_columns 125
No_of_seqs 103 out of 194
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 10:30:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 3.6E-15 7.8E-20 100.3 7.5 67 45-125 1-67 (73)
2 cd01804 midnolin_N Ubiquitin-l 99.6 1.2E-14 2.7E-19 98.0 7.5 66 45-125 1-66 (78)
3 cd01792 ISG15_repeat1 ISG15 ub 99.5 1.4E-13 3E-18 92.8 7.0 66 46-125 3-70 (80)
4 cd01807 GDX_N ubiquitin-like d 99.5 2.2E-13 4.8E-18 90.2 7.6 66 46-125 1-66 (74)
5 cd01805 RAD23_N Ubiquitin-like 99.5 2.9E-13 6.4E-18 89.2 7.9 66 46-124 1-67 (77)
6 cd01808 hPLIC_N Ubiquitin-like 99.4 9.9E-13 2.2E-17 86.4 7.2 65 46-125 1-65 (71)
7 cd01803 Ubiquitin Ubiquitin. U 99.4 1.3E-12 2.8E-17 85.3 7.7 65 46-124 1-65 (76)
8 cd01810 ISG15_repeat2 ISG15 ub 99.4 8.7E-13 1.9E-17 87.5 6.8 64 48-125 1-64 (74)
9 cd01806 Nedd8 Nebb8-like ubiq 99.4 1.7E-12 3.7E-17 84.7 7.9 66 46-125 1-66 (76)
10 cd01809 Scythe_N Ubiquitin-lik 99.4 1.7E-12 3.7E-17 83.9 7.5 66 46-125 1-66 (72)
11 cd01802 AN1_N ubiquitin-like d 99.4 2.2E-12 4.8E-17 91.9 8.6 70 42-125 24-93 (103)
12 cd01797 NIRF_N amino-terminal 99.4 1.6E-12 3.5E-17 88.1 7.2 66 46-125 1-68 (78)
13 smart00213 UBQ Ubiquitin homol 99.3 5.2E-12 1.1E-16 79.1 7.5 64 46-124 1-64 (64)
14 cd01790 Herp_N Homocysteine-re 99.3 3.2E-12 7E-17 88.0 7.0 67 45-124 1-72 (79)
15 PF00240 ubiquitin: Ubiquitin 99.3 3.8E-12 8.1E-17 82.2 6.9 60 51-124 1-60 (69)
16 PTZ00044 ubiquitin; Provisiona 99.3 5.9E-12 1.3E-16 83.0 7.4 65 46-124 1-65 (76)
17 cd01793 Fubi Fubi ubiquitin-li 99.3 5.8E-12 1.3E-16 83.5 7.1 64 46-125 1-64 (74)
18 cd01812 BAG1_N Ubiquitin-like 99.3 5.6E-12 1.2E-16 81.6 6.6 65 46-125 1-65 (71)
19 cd01813 UBP_N UBP ubiquitin pr 99.3 4.7E-12 1E-16 85.0 6.4 64 46-124 1-67 (74)
20 cd01794 DC_UbP_C dendritic cel 99.3 7E-12 1.5E-16 83.4 6.5 63 48-124 1-63 (70)
21 cd01796 DDI1_N DNA damage indu 99.3 9.1E-12 2E-16 82.5 6.9 64 48-124 1-65 (71)
22 cd01798 parkin_N amino-termina 99.3 9.7E-12 2.1E-16 81.4 6.7 64 48-125 1-64 (70)
23 KOG0010 Ubiquitin-like protein 99.3 8.3E-12 1.8E-16 109.2 6.0 65 45-124 15-79 (493)
24 TIGR00601 rad23 UV excision re 99.2 3.4E-11 7.4E-16 102.6 7.9 66 46-124 1-68 (378)
25 cd01800 SF3a120_C Ubiquitin-li 99.1 3.2E-10 6.9E-15 75.7 6.5 59 52-124 4-62 (76)
26 cd01763 Sumo Small ubiquitin-r 99.1 9.5E-10 2.1E-14 75.4 8.4 69 43-125 9-77 (87)
27 cd01769 UBL Ubiquitin-like dom 99.0 9.6E-10 2.1E-14 69.5 6.4 62 50-125 2-63 (69)
28 PF11976 Rad60-SLD: Ubiquitin- 99.0 1.9E-09 4E-14 70.3 6.7 67 46-125 1-67 (72)
29 cd01815 BMSC_UbP_N Ubiquitin-l 98.9 1.8E-09 3.9E-14 73.9 4.5 49 63-124 18-68 (75)
30 cd01799 Hoil1_N Ubiquitin-like 98.9 4.6E-09 9.9E-14 70.9 5.9 58 53-124 10-68 (75)
31 KOG0011 Nucleotide excision re 98.8 6.9E-09 1.5E-13 87.6 5.6 66 46-124 1-67 (340)
32 PLN02560 enoyl-CoA reductase 98.7 3.1E-08 6.7E-13 82.4 7.2 67 46-125 1-77 (308)
33 cd01801 Tsc13_N Ubiquitin-like 98.7 6.3E-08 1.4E-12 64.8 5.8 67 47-125 2-71 (77)
34 cd01795 USP48_C USP ubiquitin- 98.6 9.5E-08 2.1E-12 69.2 5.7 55 57-124 16-70 (107)
35 cd01789 Alp11_N Ubiquitin-like 98.4 1.2E-06 2.6E-11 59.9 6.8 67 46-124 2-74 (84)
36 PF13881 Rad60-SLD_2: Ubiquiti 98.3 5.1E-06 1.1E-10 60.2 9.0 73 45-124 2-75 (111)
37 PF11543 UN_NPL4: Nuclear pore 98.3 9.1E-07 2E-11 60.6 4.5 67 44-124 3-73 (80)
38 cd01814 NTGP5 Ubiquitin-like N 98.3 1.4E-06 3.1E-11 63.9 5.5 70 44-120 3-73 (113)
39 PF14560 Ubiquitin_2: Ubiquiti 98.2 7.7E-06 1.7E-10 55.6 7.4 68 46-125 2-77 (87)
40 KOG0003 Ubiquitin/60s ribosoma 98.2 5.4E-07 1.2E-11 66.4 1.7 65 46-124 1-65 (128)
41 PF08817 YukD: WXG100 protein 98.2 5.6E-06 1.2E-10 55.7 5.5 73 45-125 2-75 (79)
42 KOG0004 Ubiquitin/40S ribosoma 98.1 1.5E-06 3.2E-11 66.8 2.1 63 46-122 1-63 (156)
43 KOG0005 Ubiquitin-like protein 98.0 1.1E-05 2.4E-10 54.0 4.0 65 46-124 1-65 (70)
44 cd00196 UBQ Ubiquitin-like pro 97.9 7.5E-05 1.6E-09 43.0 6.6 58 54-125 6-63 (69)
45 KOG0001 Ubiquitin and ubiquiti 97.6 0.00055 1.2E-08 42.0 7.8 63 48-124 2-64 (75)
46 cd01788 ElonginB Ubiquitin-lik 97.6 0.00018 3.9E-09 53.2 6.1 62 46-122 3-64 (119)
47 PF10302 DUF2407: DUF2407 ubiq 97.2 0.0012 2.6E-08 46.8 5.8 58 48-117 3-63 (97)
48 cd01770 p47_UBX p47-like ubiqu 97.1 0.005 1.1E-07 41.8 8.1 67 45-123 4-72 (79)
49 KOG4248 Ubiquitin-like protein 97.1 0.00091 2E-08 63.8 5.3 63 47-124 4-66 (1143)
50 cd01811 OASL_repeat1 2'-5' oli 96.9 0.0033 7.1E-08 43.6 5.5 62 46-121 1-66 (80)
51 COG5417 Uncharacterized small 96.5 0.018 3.8E-07 40.0 7.0 69 45-124 4-76 (81)
52 KOG1769 Ubiquitin-like protein 96.4 0.022 4.7E-07 41.1 7.4 68 44-125 19-86 (99)
53 PF00789 UBX: UBX domain; Int 96.2 0.066 1.4E-06 35.4 8.3 70 43-124 4-76 (82)
54 KOG1639 Steroid reductase requ 96.1 0.011 2.3E-07 49.3 5.1 70 46-125 1-73 (297)
55 KOG3493 Ubiquitin-like protein 96.0 0.0024 5.1E-08 43.4 0.6 64 47-124 3-66 (73)
56 KOG4495 RNA polymerase II tran 95.9 0.017 3.8E-07 41.9 4.6 63 46-122 3-66 (110)
57 cd01767 UBX UBX (ubiquitin reg 95.2 0.16 3.5E-06 33.5 7.2 65 45-123 2-70 (77)
58 KOG1872 Ubiquitin-specific pro 95.1 0.042 9.1E-07 48.8 5.3 64 46-124 4-68 (473)
59 PF11470 TUG-UBL1: GLUT4 regul 94.5 0.18 4E-06 33.4 6.0 59 52-124 3-61 (65)
60 PF13019 Telomere_Sde2: Telome 93.7 0.3 6.5E-06 37.9 6.7 35 46-80 1-39 (162)
61 PF09379 FERM_N: FERM N-termin 93.6 0.53 1.2E-05 30.5 7.0 60 50-121 1-65 (80)
62 smart00166 UBX Domain present 93.2 1.1 2.3E-05 29.8 8.0 67 44-123 3-73 (80)
63 cd01772 SAKS1_UBX SAKS1-like U 92.4 1 2.2E-05 30.1 7.0 67 45-123 4-72 (79)
64 cd01774 Faf1_like2_UBX Faf1 ik 92.0 1.8 3.8E-05 29.7 8.0 66 44-123 3-77 (85)
65 KOG0006 E3 ubiquitin-protein l 91.5 0.55 1.2E-05 40.8 6.0 47 58-118 16-62 (446)
66 PLN02799 Molybdopterin synthas 91.0 0.53 1.1E-05 31.2 4.4 24 56-79 19-42 (82)
67 COG5227 SMT3 Ubiquitin-like pr 90.9 1.5 3.3E-05 31.6 6.9 67 45-125 24-90 (103)
68 TIGR02958 sec_mycoba_snm4 secr 88.7 2.1 4.5E-05 37.6 7.5 71 46-125 3-74 (452)
69 smart00666 PB1 PB1 domain. Pho 88.7 3.1 6.6E-05 27.1 6.7 35 47-82 3-37 (81)
70 PF15044 CLU_N: Mitochondrial 88.7 0.57 1.2E-05 31.6 3.2 50 62-124 1-51 (76)
71 KOG4583 Membrane-associated ER 86.6 0.54 1.2E-05 40.8 2.5 64 43-118 7-72 (391)
72 PF14533 USP7_C2: Ubiquitin-sp 86.1 4 8.7E-05 32.1 7.0 38 44-81 19-59 (213)
73 KOG2086 Protein tyrosine phosp 85.6 2.5 5.5E-05 36.8 6.1 66 46-123 306-373 (380)
74 cd06407 PB1_NLP A PB1 domain i 85.5 4.3 9.2E-05 27.8 6.1 35 46-81 1-35 (82)
75 cd01775 CYR1_RA Ubiquitin doma 84.8 2.9 6.2E-05 30.1 5.1 34 47-80 4-37 (97)
76 PF00564 PB1: PB1 domain; Int 84.1 6.1 0.00013 25.6 6.2 36 46-82 2-38 (84)
77 TIGR01687 moaD_arch MoaD famil 83.5 7.8 0.00017 25.7 6.7 24 56-80 16-39 (88)
78 TIGR01682 moaD molybdopterin c 83.1 4.1 8.8E-05 26.8 5.1 24 57-80 17-41 (80)
79 PRK08053 sulfur carrier protei 81.1 4 8.8E-05 26.2 4.4 25 46-75 1-25 (66)
80 cd05992 PB1 The PB1 domain is 80.0 10 0.00022 24.4 6.1 29 54-82 8-37 (81)
81 smart00295 B41 Band 4.1 homolo 79.1 7.4 0.00016 28.7 5.8 38 44-81 2-39 (207)
82 PF10209 DUF2340: Uncharacteri 78.7 7 0.00015 29.2 5.5 19 62-80 22-41 (122)
83 cd00754 MoaD Ubiquitin domain 78.1 6.1 0.00013 25.3 4.6 23 58-80 18-40 (80)
84 PF14453 ThiS-like: ThiS-like 78.0 6.2 0.00013 25.7 4.4 27 46-77 1-27 (57)
85 PRK06488 sulfur carrier protei 77.4 10 0.00022 24.1 5.3 55 46-125 1-55 (65)
86 PRK07440 hypothetical protein; 75.9 8 0.00017 25.4 4.7 57 44-124 3-59 (70)
87 PF02597 ThiS: ThiS family; I 74.7 3.9 8.4E-05 26.0 2.9 55 57-125 13-67 (77)
88 KOG3391 Transcriptional co-rep 73.3 3.6 7.8E-05 31.6 2.8 61 64-124 60-129 (151)
89 PF00788 RA: Ras association ( 72.8 19 0.00042 23.3 6.0 34 48-81 5-42 (93)
90 PF08337 Plexin_cytopl: Plexin 70.2 7.1 0.00015 35.5 4.4 47 33-79 172-225 (539)
91 PF12053 DUF3534: Domain of un 68.9 16 0.00036 27.8 5.5 65 46-117 1-67 (145)
92 PF14836 Ubiquitin_3: Ubiquiti 68.9 34 0.00074 24.0 6.8 56 57-124 15-73 (88)
93 PF00794 PI3K_rbd: PI3-kinase 67.6 19 0.00042 24.9 5.3 39 40-78 11-50 (106)
94 PF06487 SAP18: Sin3 associate 67.3 11 0.00025 27.7 4.3 69 56-124 37-114 (120)
95 PF02991 Atg8: Autophagy prote 67.1 31 0.00068 24.6 6.4 45 60-117 37-81 (104)
96 KOG0012 DNA damage inducible p 66.2 8.5 0.00018 33.7 3.9 58 54-124 11-69 (380)
97 cd01768 RA RA (Ras-associating 64.4 37 0.00081 22.2 6.3 27 55-81 12-38 (87)
98 PF11834 DUF3354: Domain of un 62.4 15 0.00032 24.6 3.7 21 60-82 22-42 (69)
99 PF12754 Blt1: Cell-cycle cont 62.3 2.5 5.5E-05 35.9 0.0 106 9-119 30-158 (309)
100 TIGR03221 muco_delta muconolac 62.0 5 0.00011 28.5 1.4 38 57-98 5-45 (90)
101 PF02192 PI3K_p85B: PI3-kinase 61.8 14 0.0003 25.3 3.6 26 58-83 2-27 (78)
102 KOG3206 Alpha-tubulin folding 61.5 26 0.00056 28.8 5.6 66 46-123 2-73 (234)
103 PRK07696 sulfur carrier protei 61.3 19 0.00041 23.3 4.0 55 46-124 1-56 (67)
104 PF01376 Enterotoxin_b: Heat-l 59.9 22 0.00047 25.4 4.4 50 25-78 19-68 (102)
105 PRK11130 moaD molybdopterin sy 59.3 35 0.00077 22.5 5.2 16 65-80 25-40 (81)
106 PRK06944 sulfur carrier protei 59.0 15 0.00033 22.9 3.3 26 46-76 1-26 (65)
107 PF04126 Cyclophil_like: Cyclo 57.2 10 0.00022 27.4 2.4 29 46-75 1-29 (120)
108 TIGR01683 thiS thiamine biosyn 57.1 16 0.00035 23.1 3.1 52 53-125 3-54 (64)
109 smart00314 RA Ras association 55.1 58 0.0013 21.4 6.5 27 55-81 15-41 (90)
110 PRK08364 sulfur carrier protei 55.1 22 0.00048 23.0 3.6 27 46-75 5-33 (70)
111 smart00144 PI3K_rbd PI3-kinase 55.0 49 0.0011 23.3 5.7 39 40-78 12-51 (108)
112 PF03931 Skp1_POZ: Skp1 family 54.0 14 0.00031 23.3 2.5 25 46-70 1-28 (62)
113 PF07929 PRiA4_ORF3: Plasmid p 53.9 30 0.00066 26.0 4.7 23 58-80 20-42 (179)
114 COG5100 NPL4 Nuclear pore prot 53.7 39 0.00085 30.5 5.9 65 46-124 1-72 (571)
115 PRK13552 frdB fumarate reducta 53.7 26 0.00057 28.1 4.5 36 44-79 3-47 (239)
116 PRK08453 fliD flagellar cappin 53.4 23 0.0005 33.1 4.6 24 54-77 136-159 (673)
117 PF10407 Cytokin_check_N: Cdc1 52.1 28 0.0006 23.6 3.8 29 56-84 3-32 (73)
118 cd00565 ThiS ThiaminS ubiquiti 52.0 22 0.00049 22.4 3.2 52 53-125 4-55 (65)
119 cd06408 PB1_NoxR The PB1 domai 51.6 50 0.0011 23.1 5.1 36 45-81 2-37 (86)
120 smart00143 PI3K_p85B PI3-kinas 50.2 23 0.00049 24.4 3.1 25 58-82 2-26 (78)
121 cd06406 PB1_P67 A PB1 domain i 49.1 74 0.0016 22.0 5.6 27 57-83 12-38 (80)
122 cd01787 GRB7_RA RA (RAS-associ 48.7 87 0.0019 21.9 5.9 34 47-80 4-37 (85)
123 PRK08640 sdhB succinate dehydr 48.0 39 0.00084 27.4 4.7 35 44-78 4-45 (249)
124 PF00276 Ribosomal_L23: Riboso 47.9 36 0.00078 23.4 3.9 25 56-80 21-45 (91)
125 cd01771 Faf1_UBX Faf1 UBX doma 46.5 88 0.0019 21.0 7.1 66 44-123 3-72 (80)
126 CHL00030 rpl23 ribosomal prote 46.0 38 0.00082 23.8 3.8 26 55-80 19-44 (93)
127 TIGR03636 L23_arch archaeal ri 45.9 41 0.00088 22.9 3.8 26 56-81 15-40 (77)
128 PTZ00380 microtubule-associate 45.8 36 0.00077 25.3 3.8 60 44-117 26-88 (121)
129 cd01773 Faf1_like1_UBX Faf1 ik 45.6 98 0.0021 21.3 7.6 66 44-123 4-73 (82)
130 KOG0013 Uncharacterized conser 44.9 18 0.00039 29.7 2.3 58 52-123 153-210 (231)
131 COG0089 RplW Ribosomal protein 44.8 40 0.00086 24.0 3.8 29 54-82 20-48 (94)
132 PRK05863 sulfur carrier protei 44.4 29 0.00063 22.1 2.8 25 46-75 1-25 (65)
133 cd01611 GABARAP Ubiquitin doma 42.2 1.3E+02 0.0028 21.7 7.0 45 60-117 45-89 (112)
134 PTZ00490 Ferredoxin superfamil 41.9 66 0.0014 24.3 4.8 31 41-71 31-61 (143)
135 PRK05659 sulfur carrier protei 41.9 35 0.00076 21.3 2.9 25 46-75 1-25 (66)
136 cd06411 PB1_p51 The PB1 domain 41.8 68 0.0015 22.1 4.4 27 58-84 9-35 (78)
137 cd01782 AF6_RA_repeat1 Ubiquit 40.8 1.1E+02 0.0023 22.7 5.6 44 33-80 15-60 (112)
138 PRK14548 50S ribosomal protein 40.7 53 0.0011 22.7 3.8 27 55-81 21-47 (84)
139 cd06396 PB1_NBR1 The PB1 domai 40.3 86 0.0019 21.7 4.8 35 47-82 2-38 (81)
140 PRK05738 rplW 50S ribosomal pr 39.8 55 0.0012 22.7 3.8 26 55-80 20-45 (92)
141 cd06398 PB1_Joka2 The PB1 doma 39.8 1.3E+02 0.0028 20.9 6.6 31 53-83 7-42 (91)
142 PF02426 MIase: Muconolactone 39.2 17 0.00037 25.6 1.2 37 57-97 6-45 (91)
143 PRK06437 hypothetical protein; 38.3 93 0.002 20.0 4.5 47 55-124 10-56 (67)
144 cd06409 PB1_MUG70 The MUG70 pr 37.0 97 0.0021 21.5 4.7 33 50-82 5-37 (86)
145 PRK07570 succinate dehydrogena 35.6 92 0.002 25.3 5.1 34 46-79 3-44 (250)
146 cd01764 Urm1 Urm1-like ubuitin 35.1 41 0.00088 23.3 2.6 21 60-80 23-43 (94)
147 PRK12576 succinate dehydrogena 34.5 77 0.0017 26.0 4.5 37 42-78 5-47 (279)
148 PRK06083 sulfur carrier protei 33.7 1.6E+02 0.0034 20.1 6.2 56 45-124 18-73 (84)
149 PF14732 UAE_UbL: Ubiquitin/SU 33.7 29 0.00062 23.8 1.6 50 65-124 8-62 (87)
150 KOG4146 Ubiquitin-like protein 33.3 1.9E+02 0.0041 21.0 6.5 51 64-125 34-91 (101)
151 PF13085 Fer2_3: 2Fe-2S iron-s 32.8 1.1E+02 0.0023 22.1 4.5 33 47-79 1-42 (110)
152 PRK12765 flagellar capping pro 31.5 94 0.002 28.4 4.9 34 44-78 131-164 (595)
153 KOG1364 Predicted ubiquitin re 31.5 57 0.0012 28.4 3.4 66 46-123 278-347 (356)
154 PRK12385 fumarate reductase ir 30.8 1.1E+02 0.0024 24.6 4.7 35 45-79 6-48 (244)
155 COG2104 ThiS Sulfur transfer p 29.6 58 0.0013 21.5 2.5 25 46-75 3-27 (68)
156 PF08783 DWNN: DWNN domain; I 29.5 90 0.002 21.1 3.5 22 59-80 13-35 (74)
157 TIGR03595 Obg_CgtA_exten Obg f 28.7 21 0.00046 23.5 0.2 14 112-125 46-59 (69)
158 PRK11840 bifunctional sulfur c 28.4 89 0.0019 26.8 4.0 55 46-124 1-55 (326)
159 PF02824 TGS: TGS domain; Int 28.4 1.1E+02 0.0024 19.2 3.6 29 49-79 2-30 (60)
160 PF10790 DUF2604: Protein of U 27.6 1.5E+02 0.0033 20.2 4.2 61 54-124 4-64 (76)
161 cd01666 TGS_DRG_C TGS_DRG_C: 26.9 1.3E+02 0.0027 20.2 3.8 33 46-79 2-38 (75)
162 PRK01777 hypothetical protein; 26.9 1.1E+02 0.0024 21.4 3.6 31 45-75 3-36 (95)
163 PTZ00191 60S ribosomal protein 26.3 1.1E+02 0.0025 23.3 3.9 27 54-80 81-107 (145)
164 PF09269 DUF1967: Domain of un 25.7 24 0.00051 23.2 0.1 14 112-125 46-59 (69)
165 PRK09908 xanthine dehydrogenas 25.6 1.1E+02 0.0024 23.6 3.8 30 44-74 5-34 (159)
166 PRK12386 fumarate reductase ir 25.3 1.1E+02 0.0024 24.9 3.9 34 45-78 4-42 (251)
167 PF03658 Ub-RnfH: RnfH family 25.2 86 0.0019 21.8 2.8 14 58-71 16-29 (84)
168 PF12949 HeH: HeH/LEM domain; 24.9 55 0.0012 19.2 1.5 16 63-78 1-16 (35)
169 PLN00129 succinate dehydrogena 24.4 1.6E+02 0.0034 24.5 4.7 46 33-78 31-85 (276)
170 PF09118 DUF1929: Domain of un 24.0 88 0.0019 21.8 2.7 42 23-68 31-73 (98)
171 PF05868 Rotavirus_VP7: Rotavi 23.4 20 0.00043 29.7 -0.8 13 88-100 213-225 (249)
172 PF10290 DUF2403: Glycine-rich 22.7 83 0.0018 21.0 2.2 38 5-49 20-57 (65)
173 PF03983 SHD1: SLA1 homology d 22.6 1.4E+02 0.003 20.2 3.3 25 47-72 35-59 (70)
174 PTZ00434 cytosolic glyceraldeh 22.6 85 0.0018 27.3 2.9 35 45-79 246-282 (361)
175 PF13157 DUF3992: Protein of u 22.2 1.7E+02 0.0036 20.7 3.8 42 30-72 26-72 (92)
176 PF05697 Trigger_N: Bacterial 21.9 1.8E+02 0.004 20.8 4.2 32 46-79 1-32 (145)
177 KOG3309 Ferredoxin [Energy pro 21.2 2E+02 0.0042 22.5 4.3 36 36-71 34-69 (159)
178 cd02851 Galactose_oxidase_C_te 20.5 1.6E+02 0.0034 20.9 3.5 41 24-68 34-75 (101)
179 PF13331 DUF4093: Domain of un 20.5 81 0.0018 21.8 1.9 32 65-96 6-37 (87)
180 PF02575 YbaB_DNA_bd: YbaB/Ebf 20.2 2.7E+02 0.0059 18.4 4.8 37 43-80 29-69 (93)
181 COG1977 MoaD Molybdopterin con 20.2 1E+02 0.0022 20.7 2.3 16 65-80 27-42 (84)
No 1
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.60 E-value=3.6e-15 Score=100.32 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=59.4
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
.|+|+|+++.|+.+.++|++++||+|||++|++.+...+ .+.+|+|.| ++++|+++|.+|||+||+
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~-------------~~qrLi~~G-k~L~D~~tL~~ygi~~~s 66 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRP-------------EKIVLKKWY-TIFKDHISLGDYEIHDGM 66 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCh-------------HHEEEEeCC-cCCCCCCCHHHcCCCCCC
Confidence 389999999999999999999999999999999875333 566899999 778999999999999997
Q ss_pred C
Q 048546 125 Q 125 (125)
Q Consensus 125 ~ 125 (125)
+
T Consensus 67 t 67 (73)
T cd01791 67 N 67 (73)
T ss_pred E
Confidence 3
No 2
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.56 E-value=1.2e-14 Score=97.96 Aligned_cols=66 Identities=18% Similarity=0.401 Sum_probs=57.7
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
.|+|+|+...|+.++|+|+.+|||+|||+.|++.+...+ .+.+|+|+| ++++|+ +|.+|||+||+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~-------------~~qrL~~~G-k~L~d~-~L~~~gi~~~~ 65 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPK-------------ERLALLHRE-TRLSSG-KLQDLGLGDGS 65 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCCh-------------HHEEEEECC-cCCCCC-cHHHcCCCCCC
Confidence 499999999999999999999999999999999875443 466899999 566777 99999999997
Q ss_pred C
Q 048546 125 Q 125 (125)
Q Consensus 125 ~ 125 (125)
.
T Consensus 66 ~ 66 (78)
T cd01804 66 K 66 (78)
T ss_pred E
Confidence 3
No 3
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.48 E-value=1.4e-13 Score=92.84 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=57.4
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEE--eecCeeeccCcchhhhcCCcCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCL--CYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L--~~~g~KLl~D~~tL~dyGIkdG 123 (125)
|+|+|+..+|+.+.++|++++||+|||+.|++.+...+ .+++| +|+| +.++|+++|++|||++|
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~-------------~~qrL~~~~~G-~~L~D~~tL~~~gi~~g 68 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPA-------------FQQRLAHLDSR-EVLQDGVPLVSQGLGPG 68 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCH-------------HHEEEEeccCC-CCCCCCCCHHHcCCCCC
Confidence 89999999999999999999999999999999875333 45567 8889 66688999999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
+.
T Consensus 69 s~ 70 (80)
T cd01792 69 ST 70 (80)
T ss_pred CE
Confidence 73
No 4
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.47 E-value=2.2e-13 Score=90.20 Aligned_cols=66 Identities=17% Similarity=0.360 Sum_probs=57.9
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+|+..+|+.+.++|+.++||++||+.|++.+...+ .+..|+|+|+. ++|+.+|++|||++|+.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~-------------~~q~L~~~G~~-L~d~~~L~~~~i~~~~~ 66 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPE-------------EQQRLLFKGKA-LADDKRLSDYSIGPNAK 66 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH-------------HHeEEEECCEE-CCCCCCHHHCCCCCCCE
Confidence 89999999999999999999999999999999875433 56789999955 57889999999999873
No 5
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.47 E-value=2.9e-13 Score=89.25 Aligned_cols=66 Identities=29% Similarity=0.512 Sum_probs=57.4
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcC-CCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSH-MPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~-~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
|+|+|+..+|+.+.++|+.++||++||+.|++.... .+. .+.+|+|+| +.++|+.+|++|||++|+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~------------~~q~L~~~G-~~L~d~~~L~~~~i~~~~ 67 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPP------------EQQKLIYSG-KILKDDTTLEEYKIDEKD 67 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCCh------------hHeEEEECC-EEccCCCCHHHcCCCCCC
Confidence 899999999999999999999999999999998753 132 466799999 555788999999999997
No 6
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.41 E-value=9.9e-13 Score=86.43 Aligned_cols=65 Identities=23% Similarity=0.494 Sum_probs=55.4
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+|+..+|. +.++|+.++||++||+.|++.... +. .+++|+|+| +.++|+++|++|||++|+.
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i-~~------------~~~~Li~~G-k~L~d~~tL~~~~i~~~st 65 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKA-NQ------------EQLVLIFAG-KILKDTDTLTQHNIKDGLT 65 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCC-CH------------HHEEEEECC-eEcCCCCcHHHcCCCCCCE
Confidence 68999999997 589999999999999999998753 32 577899999 5568889999999999863
No 7
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.41 E-value=1.3e-12 Score=85.29 Aligned_cols=65 Identities=20% Similarity=0.383 Sum_probs=57.0
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
|+|+|+..+|+.+.++|+.++||++||+.|++.+...+ .+..|+|+| +.++|+.+|.+|||++|+
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~-------------~~q~L~~~g-~~L~d~~~L~~~~i~~~~ 65 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQKES 65 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCH-------------HHeEEEECC-EECCCCCcHHHcCCCCCC
Confidence 78999999999999999999999999999999875333 456788999 556889999999999987
No 8
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.40 E-value=8.7e-13 Score=87.48 Aligned_cols=64 Identities=27% Similarity=0.386 Sum_probs=55.3
Q ss_pred EEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 48 LSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 48 ltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|.|+...|+.+.++|++++||++||+.|+..... |. .+++|+|+|+. ++|+.+|++|||++|+.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi-~~------------~~q~L~~~G~~-L~D~~tL~~~~i~~~~t 64 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERV-QA------------DQFWLSFEGRP-MEDEHPLGEYGLKPGCT 64 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCC-CH------------HHeEEEECCEE-CCCCCCHHHcCCCCCCE
Confidence 5789999999999999999999999999998653 33 57789999955 57889999999999873
No 9
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.40 E-value=1.7e-12 Score=84.69 Aligned_cols=66 Identities=20% Similarity=0.415 Sum_probs=56.8
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+|+..+|+.+.++|+.+.||++||++|++.....+ .+..|+|+|+.| +|+.+|++|||+||+.
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~-------------~~qrL~~~g~~L-~d~~tl~~~~i~~g~~ 66 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP-------------QQQRLIYSGKQM-NDDKTAADYKLEGGSV 66 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCCh-------------hhEEEEECCeEc-cCCCCHHHcCCCCCCE
Confidence 78999999999999999999999999999999875333 345678999555 7889999999999973
No 10
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.39 E-value=1.7e-12 Score=83.94 Aligned_cols=66 Identities=18% Similarity=0.431 Sum_probs=57.3
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|.|+..+|+.+.++|+.++||++||+.|++.....+ ....|+|+| ++++|+.+|.+|||++|+.
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-------------~~q~L~~~g-~~L~d~~~L~~~~i~~~~~ 66 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPV-------------EQQRLIYSG-RVLKDDETLSEYKVEDGHT 66 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCH-------------HHeEEEECC-EECCCcCcHHHCCCCCCCE
Confidence 78999999999999999999999999999999875433 345688999 6678899999999999973
No 11
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.39 E-value=2.2e-12 Score=91.86 Aligned_cols=70 Identities=19% Similarity=0.374 Sum_probs=60.8
Q ss_pred CCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCc
Q 048546 42 PEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIR 121 (125)
Q Consensus 42 ~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIk 121 (125)
+...|+|+|+...|+.+.++|++++||.+||+.|++... .+. .++.|+|+| +.++|+.+|++|||+
T Consensus 24 ~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~g-ip~------------~~QrLi~~G-k~L~D~~tL~dy~I~ 89 (103)
T cd01802 24 FYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEG-IPV------------AQQHLIWNN-MELEDEYCLNDYNIS 89 (103)
T ss_pred cCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhC-CCh------------HHEEEEECC-EECCCCCcHHHcCCC
Confidence 456899999999999999999999999999999999764 333 567799999 566889999999999
Q ss_pred CCCC
Q 048546 122 DGDQ 125 (125)
Q Consensus 122 dGd~ 125 (125)
+|+.
T Consensus 90 ~~st 93 (103)
T cd01802 90 EGCT 93 (103)
T ss_pred CCCE
Confidence 9873
No 12
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.38 E-value=1.6e-12 Score=88.07 Aligned_cols=66 Identities=21% Similarity=0.394 Sum_probs=57.2
Q ss_pred eEEEEEccCCcE-EEEE-eCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 46 LKLSVRKLDGSC-FDIE-VMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 46 MkltV~k~~g~~-~~V~-V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
|+|+|+..+|+. +.++ |+.+.||.+||+.|++... .|. .+.+|+|+| +.++|+.+|++|||++|
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~g-i~~------------~~QrLi~~G-k~L~D~~tL~~y~i~~~ 66 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFN-VEP------------ECQRLFYRG-KQMEDGHTLFDYNVGLN 66 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhC-CCH------------HHeEEEeCC-EECCCCCCHHHcCCCCC
Confidence 899999999997 7885 8999999999999999764 332 577899999 66799999999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
+.
T Consensus 67 ~~ 68 (78)
T cd01797 67 DI 68 (78)
T ss_pred CE
Confidence 73
No 13
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.35 E-value=5.2e-12 Score=79.08 Aligned_cols=64 Identities=27% Similarity=0.496 Sum_probs=54.4
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
|+|+|+..+ ..+.++|+.++||++||+.|+..+...+ ....|+|+| +.++|+++|.+|||++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~-------------~~~~L~~~g-~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPV-------------EQQRLIYKG-KVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCH-------------HHEEEEECC-EECCCCCCHHHcCCcCCC
Confidence 789998887 7889999999999999999999875433 356788999 455788999999999986
No 14
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.35 E-value=3.2e-12 Score=87.98 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=54.6
Q ss_pred CeEEEEEccCCcEEE--EEeCCCCcHHHHHHHHHHHhc-CCCCCCCCcccccccccceEEeecCeeeccCcchhhhcC--
Q 048546 45 PLKLSVRKLDGSCFD--IEVMKTATIAELRQAVEAAFS-HMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYG-- 119 (125)
Q Consensus 45 aMkltV~k~~g~~~~--V~V~~~ATV~dLK~aI~~~~~-~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyG-- 119 (125)
.|+|+|++.+++.++ |+++.++||+|||+.|+..+. ..+. .+..|||+| |+++|+.+|++|+
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~------------~~QrLIy~G-KiLkD~~tL~~~~~~ 67 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLE------------QDQRLIYSG-KLLPDHLKLRDVLRK 67 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCCh------------hHeEEEEcC-eeccchhhHHHHhhc
Confidence 489999999999955 445899999999999999764 2322 456799999 7779999999997
Q ss_pred CcCCC
Q 048546 120 IRDGD 124 (125)
Q Consensus 120 IkdGd 124 (125)
|.+|.
T Consensus 68 ~~~~~ 72 (79)
T cd01790 68 QDEYH 72 (79)
T ss_pred ccCCc
Confidence 87764
No 15
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.34 E-value=3.8e-12 Score=82.20 Aligned_cols=60 Identities=33% Similarity=0.609 Sum_probs=52.8
Q ss_pred EccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 51 RKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 51 ~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
+..+|+.|.|+|+.++||++||+.|+......+ ++..|+|+|+.| +|+.+|.+|||++|+
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~-------------~~~~L~~~G~~L-~d~~tL~~~~i~~~~ 60 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPP-------------EQQRLIYNGKEL-DDDKTLSDYGIKDGS 60 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTG-------------GGEEEEETTEEE-STTSBTGGGTTSTTE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhccccccccc-------------ccceeeeeeecc-cCcCcHHHcCCCCCC
Confidence 467899999999999999999999999986333 677899999555 999999999999997
No 16
>PTZ00044 ubiquitin; Provisional
Probab=99.33 E-value=5.9e-12 Score=82.96 Aligned_cols=65 Identities=14% Similarity=0.306 Sum_probs=57.3
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
|+|.|+..+|+.+.+.|+.+.||++||+.|++.... |. .+.+|+|+|+ .++|+.+|.+|||++|+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi-~~------------~~q~L~~~g~-~L~d~~~l~~~~i~~~~ 65 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGI-DV------------KQIRLIYSGK-QMSDDLKLSDYKVVPGS 65 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCC-CH------------HHeEEEECCE-EccCCCcHHHcCCCCCC
Confidence 789999999999999999999999999999998753 32 5678999995 55799999999999986
No 17
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.33 E-value=5.8e-12 Score=83.51 Aligned_cols=64 Identities=16% Similarity=0.213 Sum_probs=53.7
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|.|+. ++.+.++|++++||+|||+.|++.... |. .+.+|+|+| +.++|+.+|++|||++|++
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gi-p~------------~~q~Li~~G-k~L~D~~tL~~~~i~~~~t 64 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGI-DV------------EDQVLLLAG-VPLEDDATLGQCGVEELCT 64 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCC-CH------------HHEEEEECC-eECCCCCCHHHcCCCCCCE
Confidence 7899976 367899999999999999999998653 32 567899999 5568899999999999863
No 18
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.32 E-value=5.6e-12 Score=81.63 Aligned_cols=65 Identities=18% Similarity=0.439 Sum_probs=54.8
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+|+.. |..++++|+.++||++||++|++.+...+ .+..|.|+|+. ++|+.+|++|||++|++
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~-------------~~q~L~~~g~~-l~d~~~L~~~~i~~g~~ 65 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEP-------------RDQKLIFKGKE-RDDAETLDMSGVKDGSK 65 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCCh-------------HHeEEeeCCcc-cCccCcHHHcCCCCCCE
Confidence 68999665 99999999999999999999999875443 45678899955 47889999999999974
No 19
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.32 E-value=4.7e-12 Score=85.03 Aligned_cols=64 Identities=17% Similarity=0.292 Sum_probs=54.2
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEe---ecCeeeccCcchhhhcCCcC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLC---YNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~---~~g~KLl~D~~tL~dyGIkd 122 (125)
|+|+| +..|+.|+|+|+.++||+|||++|++.....+ .+..|+ +.| ++++|+.+|++|||++
T Consensus 1 ~~i~v-k~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~-------------~~QKLi~~~~~G-k~l~D~~~L~~~~i~~ 65 (74)
T cd01813 1 VPVIV-KWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLP-------------ERQKLLGLKVKG-KPAEDDVKISALKLKP 65 (74)
T ss_pred CEEEE-EECCEEEEEEECCCCCHHHHHHHHHHHHCCCH-------------HHEEEEeecccC-CcCCCCcCHHHcCCCC
Confidence 67888 88999999999999999999999999875444 333455 488 7788999999999999
Q ss_pred CC
Q 048546 123 GD 124 (125)
Q Consensus 123 Gd 124 (125)
|+
T Consensus 66 g~ 67 (74)
T cd01813 66 NT 67 (74)
T ss_pred CC
Confidence 86
No 20
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.30 E-value=7e-12 Score=83.38 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=53.9
Q ss_pred EEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 48 LSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 48 ltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
+.|+..+|+.+.++|++++||+|||+.|++... .|. .+..|+|+| +.++|+.+|.+|||++|.
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~g-i~~------------~~q~Li~~G-~~L~D~~~l~~~~i~~~~ 63 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEG-VDP------------CCQRWFFSG-KLLTDKTRLQETKIQKDY 63 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhC-CCH------------HHeEEEECC-eECCCCCCHHHcCCCCCC
Confidence 357889999999999999999999999999764 333 466799999 667899999999999875
No 21
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.30 E-value=9.1e-12 Score=82.47 Aligned_cols=64 Identities=25% Similarity=0.490 Sum_probs=53.6
Q ss_pred EEEEcc-CCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 48 LSVRKL-DGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 48 ltV~k~-~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
|+|+.. .|+.+.|+|++++||++||+.|++.... |. .+.+|+|+|+.|.+|..+|++|||++|+
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gi-p~------------~~q~Li~~Gk~L~D~~~~L~~~gi~~~~ 65 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGI-PA------------SQQQLIYNGRELVDNKRLLALYGVKDGD 65 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCC-CH------------HHeEEEECCeEccCCcccHHHcCCCCCC
Confidence 567778 8999999999999999999999998753 32 5678999996664445789999999997
No 22
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.29 E-value=9.7e-12 Score=81.35 Aligned_cols=64 Identities=19% Similarity=0.328 Sum_probs=55.1
Q ss_pred EEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 48 LSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 48 ltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|.|+..+|..+.++|+++.||++||+.|++.....+ .++.|+|+|+. ++|+.+|.+|||++|+.
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~-------------~~q~Li~~G~~-L~d~~~l~~~~i~~~st 64 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPP-------------DQLRVIFAGKE-LRNTTTIQECDLGQQSI 64 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCH-------------HHeEEEECCeE-CCCCCcHHHcCCCCCCE
Confidence 468899999999999999999999999999875332 56789999955 58889999999999873
No 23
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.25 E-value=8.3e-12 Score=109.22 Aligned_cols=65 Identities=23% Similarity=0.627 Sum_probs=58.7
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
.++|+|++.++ +++|.|+.++||.+||++|...|...+ +|.||||.| |+++|++||..|||+||-
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~-------------dqlvLIfaG-rILKD~dTL~~~gI~Dg~ 79 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPP-------------DQLVLIYAG-RILKDDDTLKQYGIQDGH 79 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCCh-------------hHeeeeecC-ccccChhhHHHcCCCCCc
Confidence 49999977777 899999999999999999999996554 689999999 777899999999999984
No 24
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.22 E-value=3.4e-11 Score=102.58 Aligned_cols=66 Identities=26% Similarity=0.539 Sum_probs=58.7
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhc--CCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFS--HMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~--~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
|+|+|++.+|+.|.|+|+.+.||.+||+.|+.... .++. .+..|+|+| |+++|+.+|++|||++|
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~------------~~QkLIy~G-kiL~Dd~tL~dy~I~e~ 67 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPV------------AQQKLIYSG-KILSDDKTVREYKIKEK 67 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCCh------------hHeEEEECC-EECCCCCcHHHcCCCCC
Confidence 89999999999999999999999999999999764 2443 566899999 67789999999999999
Q ss_pred C
Q 048546 124 D 124 (125)
Q Consensus 124 d 124 (125)
|
T Consensus 68 ~ 68 (378)
T TIGR00601 68 D 68 (378)
T ss_pred C
Confidence 7
No 25
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.09 E-value=3.2e-10 Score=75.70 Aligned_cols=59 Identities=24% Similarity=0.546 Sum_probs=51.3
Q ss_pred ccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 52 KLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 52 k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
+++|+.++|+|+.++||++||+.|+.... .|. .+..|+|.| ++++|+.+|.+|||++|+
T Consensus 4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~g-ip~------------~~q~L~~~G-~~L~d~~tL~~~~i~~g~ 62 (76)
T cd01800 4 KLNGQMLNFTLQLSDPVSVLKVKIHEETG-MPA------------GKQKLQYEG-IFIKDSNSLAYYNLANGT 62 (76)
T ss_pred ccCCeEEEEEECCCCcHHHHHHHHHHHHC-CCH------------HHEEEEECC-EEcCCCCcHHHcCCCCCC
Confidence 67899999999999999999999999865 333 466799999 566888999999999997
No 26
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.07 E-value=9.5e-10 Score=75.44 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=60.5
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
+..|.|.|+..+|+.+.+.|..++|+..||++++++....+ .+..|+|+|+.| +|++|+.+|||.|
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~-------------~~~rf~f~G~~L-~~~~T~~~l~m~d 74 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSM-------------NSVRFLFDGQRI-RDNQTPDDLGMED 74 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCc-------------cceEEEECCeEC-CCCCCHHHcCCCC
Confidence 45699999999999999999999999999999999864333 578899999666 6789999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
||.
T Consensus 75 ~d~ 77 (87)
T cd01763 75 GDE 77 (87)
T ss_pred CCE
Confidence 984
No 27
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.03 E-value=9.6e-10 Score=69.47 Aligned_cols=62 Identities=34% Similarity=0.605 Sum_probs=52.2
Q ss_pred EEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 50 VRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 50 V~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+..+|..+.+.++.++||.+||+.|++.+...+ ...+|+|+| +.++|+.+|.+|||++|++
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~-------------~~~~l~~~g-~~l~d~~~l~~~~v~~~~~ 63 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPP-------------EQQRLIYAG-KILKDDKTLSDYGIQDGST 63 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcCh-------------HHEEEEECC-cCCCCcCCHHHCCCCCCCE
Confidence 6677899999999999999999999999875333 345789999 5558999999999999873
No 28
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.99 E-value=1.9e-09 Score=70.30 Aligned_cols=67 Identities=28% Similarity=0.436 Sum_probs=57.3
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+|+..+|+.+.+.|..+.+|..|.+++.+.....++ .++.|.|+|++| ++++|+.++||.|||.
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~------------~~~~l~fdG~~L-~~~~T~~~~~ied~d~ 67 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPE------------ESIRLIFDGKRL-DPNDTPEDLGIEDGDT 67 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-------------TTEEEEETTEEE--TTSCHHHHT-STTEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCcc------------ceEEEEECCEEc-CCCCCHHHCCCCCCCE
Confidence 789999999999999999999999999999998764442 478899999777 6778999999999984
No 29
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=98.91 E-value=1.8e-09 Score=73.86 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=41.1
Q ss_pred CCCCcHHHHHHHHHHHhc--CCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 63 MKTATIAELRQAVEAAFS--HMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 63 ~~~ATV~dLK~aI~~~~~--~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
+.++||.+||+.|++++. .++. .|+.|+|+| |+++|+.+|++|||++|+
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~------------dqQrLIy~G-KiL~D~~TL~dygI~~gs 68 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDP------------ELIDLIHCG-RKLKDDQTLDFYGIQSGS 68 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCCh------------HHeEEEeCC-cCCCCCCcHHHcCCCCCC
Confidence 557999999999999873 2322 677899999 667999999999999997
No 30
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.88 E-value=4.6e-09 Score=70.90 Aligned_cols=58 Identities=24% Similarity=0.313 Sum_probs=48.3
Q ss_pred cCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCc-CCC
Q 048546 53 LDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIR-DGD 124 (125)
Q Consensus 53 ~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIk-dGd 124 (125)
..|..+.++|+++.||++||+.|+..+...+ .+..| |+|+.|.+|+++|.+|||+ +||
T Consensus 10 ~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~-------------~~QrL-~~G~~L~dD~~tL~~ygi~~~g~ 68 (75)
T cd01799 10 SHTVTIWLTVRPDMTVAQLKDKVFLDYGFPP-------------AVQRW-VIGQRLARDQETLYSHGIRTNGD 68 (75)
T ss_pred cCCCeEEEEECCCCcHHHHHHHHHHHHCcCH-------------HHEEE-EcCCeeCCCcCCHHHcCCCCCCC
Confidence 4466788999999999999999999875444 45567 9998887898999999999 666
No 31
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.80 E-value=6.9e-09 Score=87.56 Aligned_cols=66 Identities=26% Similarity=0.511 Sum_probs=58.7
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhc-CCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFS-HMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~-~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
|+|+|++++++.|.++|.++-||.++|+.|+.... .||.. +..|||+| |+++|+.++.+|+|++++
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~------------~QkLIy~G-kiL~D~~tv~Eykv~E~~ 67 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAE------------QQKLIYSG-KILKDETTVGEYKVKEKK 67 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchh------------hheeeecc-eeccCCcchhhhccccCc
Confidence 89999999999999999999999999999999764 46663 44599999 777999999999999875
No 32
>PLN02560 enoyl-CoA reductase
Probab=98.73 E-value=3.1e-08 Score=82.45 Aligned_cols=67 Identities=27% Similarity=0.499 Sum_probs=52.3
Q ss_pred eEEEEEccCCcEE---EEEeCCCCcHHHHHHHHHHHhcC-CCCCCCCcccccccccceEEee---cCe---eeccCcchh
Q 048546 46 LKLSVRKLDGSCF---DIEVMKTATIAELRQAVEAAFSH-MPKTGPGKISWPHVWGHFCLCY---NGQ---KLICENDNI 115 (125)
Q Consensus 46 MkltV~k~~g~~~---~V~V~~~ATV~dLK~aI~~~~~~-~~~~g~~~IsW~~VW~q~~L~~---~g~---KLl~D~~tL 115 (125)
|+|+|+.++|+.+ .|+|++++||+|||++|+++.+. .+. || .|++ .|+ +.++|+++|
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~------------Rq-RL~~~~~~gk~~g~~L~d~ktL 67 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPS------------RQ-RLTLPLPPGKTRPTVLDDSKSL 67 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChh------------he-EEEEecCCCCcCccccCCCCCH
Confidence 7899998889887 79999999999999999998653 332 33 3444 231 366889999
Q ss_pred hhcCCcCCCC
Q 048546 116 KYYGIRDGDQ 125 (125)
Q Consensus 116 ~dyGIkdGd~ 125 (125)
+|+|+++|++
T Consensus 68 ~d~gv~~gst 77 (308)
T PLN02560 68 KDYGLGDGGT 77 (308)
T ss_pred HhcCCCCCce
Confidence 9999999974
No 33
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.66 E-value=6.3e-08 Score=64.80 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=45.0
Q ss_pred EEEEEccCCcE---EEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 47 KLSVRKLDGSC---FDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 47 kltV~k~~g~~---~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
.|.++++..+. ++++ +.+|||.|||++|++.++..+...+ .+++.+.| +.+.|+++|.+|||++|
T Consensus 2 ~i~~~~~~~k~~~~~~~~-~~~aTV~dlk~~i~~~~~~~~~~Rq----------rl~~~~~g-~~L~d~~tL~~~gv~~g 69 (77)
T cd01801 2 EILDAKRSDKPIGKLKVS-SGDATIADLKKLIAKSSPQLTVNRQ----------SLRLEPKG-KSLKDDDTLVDLGVGAG 69 (77)
T ss_pred eeeccccCcCceeecccC-CCCccHHHHHHHHHHHcCCCCccee----------EEEeCCCC-cccCCcccHhhcCCCCC
Confidence 45555554133 3343 6889999999999998654322111 13356888 55678889999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
++
T Consensus 70 ~~ 71 (77)
T cd01801 70 AT 71 (77)
T ss_pred CE
Confidence 74
No 34
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.60 E-value=9.5e-08 Score=69.21 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=47.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 57 CFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 57 ~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
...++|+.++||.+||..|..+|...|. +..|+|+|+-|.+|.+||++|||..|+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~-------------dQkL~~dG~~L~DDsrTLssyGv~sgS 70 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPF-------------DQNLSIDGKILSDDCATLGTLGVIPES 70 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcc-------------cceeeecCceeccCCccHHhcCCCCCC
Confidence 3578899999999999999999987774 224888899999999999999998875
No 35
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.41 E-value=1.2e-06 Score=59.91 Aligned_cols=67 Identities=19% Similarity=0.286 Sum_probs=48.8
Q ss_pred eEEEEEccC-CcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCe-----eeccCcchhhhcC
Q 048546 46 LKLSVRKLD-GSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQ-----KLICENDNIKYYG 119 (125)
Q Consensus 46 MkltV~k~~-g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~-----KLl~D~~tL~dyG 119 (125)
++|.|.... ....+..++.+.||.+||+.++..+.-.++ .|....|+|. .|.+|.++|.+||
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~------------~mrL~l~~~~~~~~~~l~~d~~~L~~y~ 69 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPAS------------SMRLQLFDGDDKLVSKLDDDDALLGSYP 69 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCcc------------ceEEEEEcCCCCeEeecCCCccEeeecc
Confidence 456664332 223455599999999999999999865554 2333357775 4789999999999
Q ss_pred CcCCC
Q 048546 120 IRDGD 124 (125)
Q Consensus 120 IkdGd 124 (125)
++||.
T Consensus 70 ~~dg~ 74 (84)
T cd01789 70 VDDGC 74 (84)
T ss_pred CCCCC
Confidence 99996
No 36
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.33 E-value=5.1e-06 Score=60.23 Aligned_cols=73 Identities=21% Similarity=0.335 Sum_probs=51.6
Q ss_pred CeEEEEEccCCc-EEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 45 PLKLSVRKLDGS-CFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 45 aMkltV~k~~g~-~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
.+.|..+-.+|+ .-++..+.+.||++||+.|...-+..-+..+ .++ ..+.|||.| |+|+|+++|+++++.-|
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p--~s~----~~lRLI~~G-riL~d~~tL~~~~~~~~ 74 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERP--KSP----SDLRLIYAG-RILEDNKTLSDCRLPSG 74 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT---SG----GGEEEEETT-EEE-SSSBTGGGT--TT
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCC--CCh----hhEEEEeCC-eecCCcCcHHHhCCCCC
Confidence 577888888999 6688889999999999999985432111111 122 678999999 78899999999988776
Q ss_pred C
Q 048546 124 D 124 (125)
Q Consensus 124 d 124 (125)
+
T Consensus 75 ~ 75 (111)
T PF13881_consen 75 E 75 (111)
T ss_dssp S
T ss_pred C
Confidence 5
No 37
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.31 E-value=9.1e-07 Score=60.60 Aligned_cols=67 Identities=25% Similarity=0.438 Sum_probs=38.9
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEe--ecC-eee-ccCcchhhhcC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLC--YNG-QKL-ICENDNIKYYG 119 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~--~~g-~KL-l~D~~tL~dyG 119 (125)
+.|-|.|++.+|.+ .|+|++++|+.+|++.|++.+..... + +.|. .++ +.+ ..++++|+++|
T Consensus 3 ~~milRvrS~dG~~-Rie~~~~~t~~~L~~kI~~~l~~~~~-~------------~~L~~~~~~~~~l~s~~~~tl~~lg 68 (80)
T PF11543_consen 3 SSMILRVRSKDGMK-RIEVSPSSTLSDLKEKISEQLSIPDS-S------------QSLSKDRNNKEELKSSDSKTLSSLG 68 (80)
T ss_dssp ---EEEEE-SSEEE-EEEE-TTSBHHHHHHHHHHHS---TT-T---------------BSSGGGGGCSSS-TT-CCCCT-
T ss_pred ccEEEEEECCCCCE-EEEcCCcccHHHHHHHHHHHcCCCCc-c------------eEEEecCCCCcccccCCcCCHHHcC
Confidence 67999999998876 78899999999999999998853322 1 1111 112 233 26789999999
Q ss_pred CcCCC
Q 048546 120 IRDGD 124 (125)
Q Consensus 120 IkdGd 124 (125)
|+.||
T Consensus 69 lkHGd 73 (80)
T PF11543_consen 69 LKHGD 73 (80)
T ss_dssp --TT-
T ss_pred CCCcc
Confidence 99998
No 38
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.30 E-value=1.4e-06 Score=63.89 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=52.8
Q ss_pred CCeEEEEEccCCcEE-EEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCC
Q 048546 44 QPLKLSVRKLDGSCF-DIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGI 120 (125)
Q Consensus 44 ~aMkltV~k~~g~~~-~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGI 120 (125)
..+.|..|-.||+-+ +..++.++||++||+.|++......+..+ +-+.+..|||+| |+|+|+.||.+|+.
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P------~~~~~qKLIysG-KiLeD~~TL~d~~~ 73 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGP------KTVNEVKLISAG-KILENSKTVGECRS 73 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCC------CCHHHeEEEeCC-eecCCCCcHHHhCC
Confidence 457788888888775 66678999999999999986532211111 123788899999 78899999999993
No 39
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.22 E-value=7.7e-06 Score=55.63 Aligned_cols=68 Identities=22% Similarity=0.315 Sum_probs=47.8
Q ss_pred eEEEEEccCCc--EEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEee---cC---eeeccCcchhhh
Q 048546 46 LKLSVRKLDGS--CFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCY---NG---QKLICENDNIKY 117 (125)
Q Consensus 46 MkltV~k~~g~--~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~---~g---~KLl~D~~tL~d 117 (125)
++|.|.....+ ..+..++.+.||.|||..++..+.-.+. .+....+ ++ ..+.+|.++|.+
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~------------~m~L~l~~~~~~~~~~~~~dd~~~L~~ 69 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPS------------DMRLQLKSDKDDSKIEELDDDDATLGS 69 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TT------------TEEEEEE-TSSSSEEEESSGSSSBCCH
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcc------------cEEEEEEecCCCccccccCCCccEeec
Confidence 56777554443 7788899999999999999999875553 1222222 12 345788999999
Q ss_pred cCCcCCCC
Q 048546 118 YGIRDGDQ 125 (125)
Q Consensus 118 yGIkdGd~ 125 (125)
||++||++
T Consensus 70 y~~~dg~~ 77 (87)
T PF14560_consen 70 YGIKDGMR 77 (87)
T ss_dssp HT-STTEE
T ss_pred CCCCCCCE
Confidence 99999963
No 40
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=5.4e-07 Score=66.37 Aligned_cols=65 Identities=20% Similarity=0.379 Sum_probs=55.0
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
|.+.++++.|+...|+|+++.||..||..|+.+-...| .|..|+|+| +.++|+.||++|||+--|
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~-------------~~~~L~~~~-k~LED~~Tla~Y~i~~~~ 65 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLADYNIQKES 65 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCH-------------HHHHHHhcc-cccccCCcccccCccchh
Confidence 45778899999999999999999999999999743333 466799999 778999999999997544
No 41
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=98.15 E-value=5.6e-06 Score=55.67 Aligned_cols=73 Identities=22% Similarity=0.363 Sum_probs=48.5
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEe-ecCeeeccCcchhhhcCCcCC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLC-YNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~-~~g~KLl~D~~tL~dyGIkdG 123 (125)
.++|+|.-.+|..+++.+|.+.+|++|-..+.+.+.....+... - .++.|. -+|. .++++.+|+++||.||
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~------~-~~~~L~~~~g~-~L~~~~tL~~~gV~dG 73 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPG------H-GQWVLARAGGR-PLDPDQTLADAGVRDG 73 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT--------E-EEEG-GGTE-EEETTSBCGGGT--TT
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCC------c-ceEEEEecCCc-ccCCcCcHhHcCCCCC
Confidence 36788877667999999999999999999999988632221110 0 256777 6674 6689999999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
|.
T Consensus 74 d~ 75 (79)
T PF08817_consen 74 DV 75 (79)
T ss_dssp -E
T ss_pred CE
Confidence 83
No 42
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=98.10 E-value=1.5e-06 Score=66.83 Aligned_cols=63 Identities=21% Similarity=0.429 Sum_probs=52.7
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
|.|.|+.+.|+.+..+|+.++||..+|+.|+.+- ..|.+ |.-|||+|+.| .|..+|+||+|+-
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~e-gIp~d------------qqrlifag~qL-edgrtlSDY~Iqk 63 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKE-GIPPD------------QQRLIFAGKQL-EDGRTLSDYNIQK 63 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhccc-CCCch------------hhhhhhhhccc-ccCCccccccccc
Confidence 7889999999999999999999999999999763 34443 34589999887 5669999999974
No 43
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.1e-05 Score=54.00 Aligned_cols=65 Identities=20% Similarity=0.432 Sum_probs=54.6
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
|.|.|+++.|+.++++++++.+|...|+.|+++-.-.|+ |..|+|.|+. +.|++|-.+|.+.-|+
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~-------------qqrli~~gkq-m~DD~tA~~Y~~~~GS 65 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQ-------------QQRLIYAGKQ-MNDDKTAAHYNLLGGS 65 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCch-------------hhhhhhcccc-ccccccHHHhhhccce
Confidence 678999999999999999999999999999998544442 4458999944 5788999999887765
No 44
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.91 E-value=7.5e-05 Score=42.98 Aligned_cols=58 Identities=28% Similarity=0.521 Sum_probs=46.9
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 54 DGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 54 ~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
+|....+.++.++||.+||+.|...+...+ ..+.|.+.| ....+...+.++++.+|++
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~-------------~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 63 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPP-------------EQQRLLVNG-KILPDSLTLEDYGLQDGDE 63 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcCh-------------HHeEEEECC-eECCCCCcHHHcCCCCCCE
Confidence 688888989999999999999999876322 567788999 4556777778999998873
No 45
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.64 E-value=0.00055 Score=41.98 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=50.4
Q ss_pred EEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 48 LSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 48 ltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
+.+....|+.+.++|...-+|..+|..|+....... .+.++.+.| +.+.|+.+|.+|+|..+.
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~-------------~~q~~~~~~-~~l~d~~~l~~~~i~~~~ 64 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPV-------------DQQRLIFGG-KPLEDGRTLADYNIQEGS 64 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCC-------------eeEEEEECC-EECcCCCcHHHhCCCCCC
Confidence 456678999999999999999999999998742111 455699999 555778999999998875
No 46
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=97.62 E-value=0.00018 Score=53.21 Aligned_cols=62 Identities=16% Similarity=0.292 Sum_probs=47.0
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
|=+.| ++....+=+...++.||.|||+.|+.-.+..|+. | -|+.++ -+++|++||+|||+.+
T Consensus 3 vFlmI-rR~KTTiF~dakes~tVlelK~~iegI~k~pp~d------------Q-rL~kd~-qvLeD~kTL~d~g~t~ 64 (119)
T cd01788 3 VFLMI-RRHKTTIFTDAKESTTVYELKRIVEGILKRPPED------------Q-RLYKDD-QLLDDGKTLGDCGFTS 64 (119)
T ss_pred eEEEE-EecceEEEeecCCcccHHHHHHHHHHHhcCChhH------------h-eeecCc-eeecccccHHHcCccc
Confidence 44566 5556677777899999999999999988766642 2 244445 6789999999999954
No 47
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.17 E-value=0.0012 Score=46.82 Aligned_cols=58 Identities=22% Similarity=0.412 Sum_probs=39.9
Q ss_pred EEEEccCCcE-EEEEeC--CCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhh
Q 048546 48 LSVRKLDGSC-FDIEVM--KTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKY 117 (125)
Q Consensus 48 ltV~k~~g~~-~~V~V~--~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~d 117 (125)
|+|+-.++-. +++.|+ .+.||.+||+.|......... . +.+.|||+| +++.|...|..
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s---~--------~rLRlI~~G-r~L~d~t~l~~ 63 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPS---R--------RRLRLIYAG-RLLNDHTDLSS 63 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCc---c--------ccEEeeecC-cccCccchhhh
Confidence 4444444322 445555 789999999999997632221 1 688999999 77888887764
No 48
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.11 E-value=0.005 Score=41.82 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=53.2
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEe--ecCeeeccCcchhhhcCCcC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLC--YNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~--~~g~KLl~D~~tL~dyGIkd 122 (125)
.-+|-|+--||+.+......++||.||.+.|....... +. +.|.|+ |-.+.|.+++.||.|.|+.+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~---~~---------~~f~L~t~fP~k~l~~~~~Tl~eagL~~ 71 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEF---AA---------RPFTLMTAFPVKELSDESLTLKEANLLN 71 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCC---CC---------CCEEEecCCCCcccCCCCCcHHHCCCcC
Confidence 56889999999999888899999999999999854221 11 456665 55777888899999999987
Q ss_pred C
Q 048546 123 G 123 (125)
Q Consensus 123 G 123 (125)
.
T Consensus 72 s 72 (79)
T cd01770 72 A 72 (79)
T ss_pred c
Confidence 4
No 49
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00091 Score=63.79 Aligned_cols=63 Identities=21% Similarity=0.404 Sum_probs=53.0
Q ss_pred EEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 47 KLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 47 kltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
.|+|+++|...-.|.|....||.+||..|.++.+-.. +...+||.| +++.|++++..||| ||-
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s-------------~~qr~i~~g-rvl~~~k~vq~~~v-dgk 66 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPS-------------EKQRLIYQG-RVLQDDKKVQEYNV-DGK 66 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhccccc-------------ccceeeecc-eeeccchhhhhccC-CCe
Confidence 4899999999999999999999999999999875322 223489999 66689999999999 773
No 50
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=96.88 E-value=0.0033 Score=43.64 Aligned_cols=62 Identities=16% Similarity=0.296 Sum_probs=48.4
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeec---C-eeeccCcchhhhcCCc
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYN---G-QKLICENDNIKYYGIR 121 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~---g-~KLl~D~~tL~dyGIk 121 (125)
++|+|+...+..+.+.|.+-.+|.++|..|.+...... +..|.|. | ..++.+..+|++|||=
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g--------------~qrLsfQepgg~rqlL~s~~sLA~yGiF 66 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG--------------LQRLSFQEPGGERQLLSSRKSLADYGIF 66 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc--------------ceEEEeecCCcccccccccccHhhhcce
Confidence 57999999899999999999999999999999765332 1223332 2 3678899999999983
No 51
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.50 E-value=0.018 Score=40.05 Aligned_cols=69 Identities=22% Similarity=0.417 Sum_probs=49.6
Q ss_pred CeEEEE--EccCCcEEEEEeCCCCcHHHHHHHHHHHhc--CCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCC
Q 048546 45 PLKLSV--RKLDGSCFDIEVMKTATIAELRQAVEAAFS--HMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGI 120 (125)
Q Consensus 45 aMkltV--~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~--~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGI 120 (125)
-|+||| +.-+|..|++.+|.--+|..|=..+.+..+ ..+..| -+......+ +|+.++..|.||||
T Consensus 4 ~ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg----------~~Ikv~nKa-~llsgd~kL~d~~I 72 (81)
T COG5417 4 HIKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREG----------TQIKVMNKA-QLLSGDDKLIDYQI 72 (81)
T ss_pred eEEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCC----------CEEEEeccc-eEecCCceEEeccc
Confidence 355655 345689999999998898888777766554 222222 244455566 77889999999999
Q ss_pred cCCC
Q 048546 121 RDGD 124 (125)
Q Consensus 121 kdGd 124 (125)
.|||
T Consensus 73 adGD 76 (81)
T COG5417 73 ADGD 76 (81)
T ss_pred cCCC
Confidence 9998
No 52
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.022 Score=41.09 Aligned_cols=68 Identities=21% Similarity=0.372 Sum_probs=57.9
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
.-++|.|+..++...-+.|..++...-|.+|..+... ++ |+++...|+|++| .+..|=.+.+..+|
T Consensus 19 ~hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~G---------l~----~~s~RFlFdG~rI-~~~~TP~~L~mEd~ 84 (99)
T KOG1769|consen 19 EHINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQG---------LS----MNSLRFLFDGQRI-RETHTPADLEMEDG 84 (99)
T ss_pred ceEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcC---------Cc----cceEEEEECCcCc-CCCCChhhhCCcCC
Confidence 5689999888888888889999999999999888532 23 3889999999998 67789999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
|+
T Consensus 85 D~ 86 (99)
T KOG1769|consen 85 DE 86 (99)
T ss_pred cE
Confidence 85
No 53
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.16 E-value=0.066 Score=35.39 Aligned_cols=70 Identities=21% Similarity=0.310 Sum_probs=52.6
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEe--ecCeeeccCc-chhhhcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLC--YNGQKLICEN-DNIKYYG 119 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~--~~g~KLl~D~-~tL~dyG 119 (125)
....+|.|+--||+.+.-....++||.+|..-|......... ..|.|+ |-.+.+.+++ .||.+.|
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~------------~~f~L~~~~Pr~~l~~~~~~tl~e~~ 71 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEE------------SDFELITAFPRRELTDEDSKTLEEAG 71 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTT------------SSEEEEESSSTEECCSTTTSBTCCCT
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCC------------ccEEEEeCCCCcCCCccccccHHHhc
Confidence 356889999999999888889999999999999987643332 235554 4455665555 7999999
Q ss_pred CcCCC
Q 048546 120 IRDGD 124 (125)
Q Consensus 120 IkdGd 124 (125)
+..+.
T Consensus 72 l~p~~ 76 (82)
T PF00789_consen 72 LLPSA 76 (82)
T ss_dssp TSSCE
T ss_pred CCCCe
Confidence 87653
No 54
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.12 E-value=0.011 Score=49.34 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=46.8
Q ss_pred eEEEEEccCCcE-EE-EEeCCCCcHHHHHHHHHHHhc-CCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 46 LKLSVRKLDGSC-FD-IEVMKTATIAELRQAVEAAFS-HMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 46 MkltV~k~~g~~-~~-V~V~~~ATV~dLK~aI~~~~~-~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
|.|++.++.+.. .. ...+..+|++|++++|.++.. ..+. .++ .++-+.-.|+.| .|+.+|++||..+
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~-~~r--------~tlr~e~kgkpl-~~~s~l~e~~~~s 70 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPY-RIR--------LTLRVEPKGKPL-IDNSKLQEYGDGS 70 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCcc-chh--------heeeccCCCccc-cchhHHHHhccCC
Confidence 678887777643 33 334667999999999888643 3321 111 245556668565 5777899999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
|++
T Consensus 71 ~~~ 73 (297)
T KOG1639|consen 71 GAT 73 (297)
T ss_pred CCE
Confidence 853
No 55
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.0024 Score=43.41 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=46.1
Q ss_pred EEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 47 KLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 47 kltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
.+.+.-+=|++..|....+.||+|||+.|+.+..-.++ ...|- ..--+.+|.-+|++|-|.+|-
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~-------------kivl~-k~~~i~kd~I~L~dyeihdg~ 66 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPE-------------KIVLK-KWYTIFKDHITLSDYEIHDGM 66 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChh-------------HhHHH-hhhhhhhcccceeeEEeccCc
Confidence 44555566888889999999999999999997543322 12222 222567899999999999883
No 56
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=95.85 E-value=0.017 Score=41.92 Aligned_cols=63 Identities=13% Similarity=0.234 Sum_probs=43.7
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccc-eEEeecCeeeccCcchhhhcCCcC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGH-FCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q-~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
|=+.| ++..+.+-+.-.++.||.|||..++.-.+..+. .| +|+. +...|++|.++|.|+|...
T Consensus 3 ~f~~V-rR~kttif~da~es~tV~elK~~l~gi~~~Pvn------------~qrL~km-d~eqlL~D~ktL~d~gfts 66 (110)
T KOG4495|consen 3 VFLRV-RRHKTTIFTDAKESSTVFELKRKLEGILKRPVN------------EQRLYKM-DTEQLLDDGKTLGDCGFTS 66 (110)
T ss_pred eeeee-eecceeEEeecCccccHHHHHHHHHHHHhCCCc------------chheeec-CHHHHhhccchhhhccccc
Confidence 44566 455666677788899999999999987653321 11 2222 3337889999999998754
No 57
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.21 E-value=0.16 Score=33.48 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=47.7
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEe--ecCeeecc--CcchhhhcCC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLC--YNGQKLIC--ENDNIKYYGI 120 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~--~~g~KLl~--D~~tL~dyGI 120 (125)
.-+|.|+--||+.+....+.++||.||.+.|...... . ..|.|+ |-.+.+.+ ++.||.+.|+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~-------------~~f~L~t~~Pr~~~~~~~~~~TL~e~gL 67 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-A-------------EPFTLMTSFPRRVLTDLDYELTLQEAGL 67 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-C-------------CCEEEEeCCCCccCCCCCccCcHHHcCC
Confidence 3578888899999888889999999999999875321 1 334444 33445544 6899999999
Q ss_pred cCC
Q 048546 121 RDG 123 (125)
Q Consensus 121 kdG 123 (125)
.++
T Consensus 68 ~~s 70 (77)
T cd01767 68 VNE 70 (77)
T ss_pred ccc
Confidence 854
No 58
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.042 Score=48.79 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=52.6
Q ss_pred eEEEEEccCCcEEEEE-eCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 46 LKLSVRKLDGSCFDIE-VMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 46 MkltV~k~~g~~~~V~-V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
..|.| +-.|+.++++ +..++|+..||..+.......|+ ||. +.+.| ++++|+-.+...+||+|.
T Consensus 4 ~~v~V-KW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~Pe------------RQK-v~vKG-g~a~dd~~~~al~iKpn~ 68 (473)
T KOG1872|consen 4 DTVIV-KWGGKKYPVETLSTDETPSVLKAQLFALTGVPPE------------RQK-VMVKG-GLAKDDVDWGALQIKPNE 68 (473)
T ss_pred ceEee-eecCccccceeccCCCchHHHHHHHHHhcCCCcc------------cee-EEEec-ccccccccccccccCCCC
Confidence 35666 7779999999 89999999999999998766676 666 77888 777888788888999884
No 59
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=94.49 E-value=0.18 Score=33.39 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=39.3
Q ss_pred ccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 52 KLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 52 k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
.-++..+.|.|.++.|+.|+=+..-++|...+ .++.|.|++ |.++-+-.++-.|+-+|.
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~-------------~~~~L~h~~-k~ldlslp~R~snL~n~a 61 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDP-------------SSYDLKHNN-KPLDLSLPFRLSNLPNNA 61 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--G-------------GG-EEEETT-EEESSS-BHHHH---SS-
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCc-------------cceEEEECC-EEeccccceeecCCCCCC
Confidence 56788899999999999999998888887665 367899999 556888888888888874
No 60
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=93.72 E-value=0.3 Score=37.94 Aligned_cols=35 Identities=17% Similarity=0.459 Sum_probs=31.1
Q ss_pred eEEEEEccCC----cEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 46 LKLSVRKLDG----SCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 46 MkltV~k~~g----~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
|.|.|...+| ..+.+.++.++||.||+..|.....
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~ 39 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLP 39 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcC
Confidence 6789999999 5788999999999999999999764
No 61
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=93.64 E-value=0.53 Score=30.53 Aligned_cols=60 Identities=27% Similarity=0.276 Sum_probs=44.4
Q ss_pred EEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEee----cC-eeeccCcchhhhcCCc
Q 048546 50 VRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCY----NG-QKLICENDNIKYYGIR 121 (125)
Q Consensus 50 V~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~----~g-~KLl~D~~tL~dyGIk 121 (125)
|.-+||+...++|+.++|+.||=+.|..+...... .-|-|.+ +| ..-++.+++|.+++.+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~------------~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEK------------EYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSG------------GGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCc------------cEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 45689999999999999999999999998853321 4566777 12 3456777888887655
No 62
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=93.23 E-value=1.1 Score=29.77 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=46.3
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEe--ecCeeeccC--cchhhhcC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLC--YNGQKLICE--NDNIKYYG 119 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~--~~g~KLl~D--~~tL~dyG 119 (125)
..-+|.||--||+.+....+.++||.||.+.|..... .. . +.|.|+ |-.+.+.++ +.||.+.|
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~-~~---~---------~~f~L~t~~Prk~l~~~d~~~tL~e~g 69 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALT-DG---N---------DPFTLNSPFPRRTFTKDDYSKTLLELA 69 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHccc-CC---C---------CCEEEEeCCCCcCCccccccCCHHHCC
Confidence 5678999999999998888999999999999944221 11 1 234443 434334333 47999999
Q ss_pred CcCC
Q 048546 120 IRDG 123 (125)
Q Consensus 120 IkdG 123 (125)
+..+
T Consensus 70 L~p~ 73 (80)
T smart00166 70 LLPS 73 (80)
T ss_pred CCCc
Confidence 8654
No 63
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.36 E-value=1 Score=30.15 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=46.4
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccC--cchhhhcCCcC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICE--NDNIKYYGIRD 122 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D--~~tL~dyGIkd 122 (125)
.-+|.|+--||+.+....+.++|+.||.+.|+....... . =.++..|-.+.+.++ +.||.+.|+.+
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~~---~---------f~L~t~fPrk~~~~~d~~~TL~elgL~P 71 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNGG---P---------FTLMTPFPRKVFTEDDMEKPLQELGLVP 71 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCCC---C---------EEEEeCCCCeECCcccccCCHHHCCCCC
Confidence 457889889999988888999999999999987431110 0 023334445444333 58999999876
Q ss_pred C
Q 048546 123 G 123 (125)
Q Consensus 123 G 123 (125)
.
T Consensus 72 s 72 (79)
T cd01772 72 S 72 (79)
T ss_pred c
Confidence 4
No 64
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.05 E-value=1.8 Score=29.73 Aligned_cols=66 Identities=11% Similarity=0.231 Sum_probs=48.1
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeec-Ceeec--------cCcch
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYN-GQKLI--------CENDN 114 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~-g~KLl--------~D~~t 114 (125)
.+.+|.|+--+|+.+.-....+.||.+|...|... ...+ ..|.|+.+ ..+.+ +.+.|
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~-------------~~f~L~t~FPrr~~~~~~~~~~~~~~T 68 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETP-------------EKFQIVTNFPRRVLPCLPSEGDPPPPT 68 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCC-------------CcEEEecCCCCccccccccccCcCCCC
Confidence 57899999999999888888899999999999642 1222 34556554 22333 34679
Q ss_pred hhhcCCcCC
Q 048546 115 IKYYGIRDG 123 (125)
Q Consensus 115 L~dyGIkdG 123 (125)
|.+.|+.+.
T Consensus 69 L~eaGL~~s 77 (85)
T cd01774 69 LLEAGLSNS 77 (85)
T ss_pred HHHcCCCCc
Confidence 999999865
No 65
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=91.52 E-value=0.55 Score=40.76 Aligned_cols=47 Identities=15% Similarity=0.320 Sum_probs=37.2
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhc
Q 048546 58 FDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYY 118 (125)
Q Consensus 58 ~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dy 118 (125)
++|+|+.+..|.+||+.+++.....+ .++-.+|.|++| .|+.++...
T Consensus 16 l~v~v~~~t~I~~lke~Vak~~gvp~-------------D~L~viFaGKeL-s~~ttv~~c 62 (446)
T KOG0006|consen 16 LPVEVDSDTSIFQLKEVVAKRQGVPA-------------DQLRVIFAGKEL-SNDTTVQNC 62 (446)
T ss_pred eeEEEecCCCHHHHHHHHHHhhCCCh-------------hheEEEEecccc-ccCceeecc
Confidence 89999999999999999999764333 577899999887 455666633
No 66
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=91.00 E-value=0.53 Score=31.20 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 048546 56 SCFDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 56 ~~~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
....++++..+||.+|.+.+...+
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~ 42 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKF 42 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHC
Confidence 345777888999999999998765
No 67
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=1.5 Score=31.59 Aligned_cols=67 Identities=18% Similarity=0.271 Sum_probs=53.8
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
-|.|.|...+|..+-+.|..+.|...|-+|+.+...-.- ..+...|+|+.| +-++|=.|++..+||
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m-------------~slRfL~dG~rI-~~dqTP~dldmEdnd 89 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNM-------------SSLRFLFDGKRI-DLDQTPGDLDMEDND 89 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCc-------------ceeEEEEcceec-CCCCChhhcCCccch
Confidence 477889889999988888999999999999988642110 356688999888 567799999999998
Q ss_pred C
Q 048546 125 Q 125 (125)
Q Consensus 125 ~ 125 (125)
+
T Consensus 90 ~ 90 (103)
T COG5227 90 E 90 (103)
T ss_pred H
Confidence 5
No 68
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=88.74 E-value=2.1 Score=37.59 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=52.8
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCC-CCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMP-KTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~-~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
-+|+|. .+.+..|+.+|.+..|.||=-.+.+...... +.+.. +.+.|.--|..-++.+.+|.+.||.|||
T Consensus 3 ~RVtV~-~~~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~--------~~w~L~r~gG~pL~~~~sL~~~gV~DG~ 73 (452)
T TIGR02958 3 CRVTVL-AGRRAVDVALPADVPVAELIPDLVDLLDDRGAAELGA--------VRWALARAGGSPLDPDASLAEAGVRDGE 73 (452)
T ss_pred EEEEEe-eCCeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCC--------cceEEecCCCCCCCCCCCHHHcCCCCCC
Confidence 467885 4456689999999999999999999875311 11111 4556766655666889999999999998
Q ss_pred C
Q 048546 125 Q 125 (125)
Q Consensus 125 ~ 125 (125)
.
T Consensus 74 ~ 74 (452)
T TIGR02958 74 L 74 (452)
T ss_pred e
Confidence 4
No 69
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=88.71 E-value=3.1 Score=27.07 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=28.0
Q ss_pred EEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCC
Q 048546 47 KLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHM 82 (125)
Q Consensus 47 kltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~ 82 (125)
+|.+ ...|....+.|+.+.|..||+.+|.++|+..
T Consensus 3 ~vK~-~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~ 37 (81)
T smart00666 3 DVKL-RYGGETRRLSVPRDISFEDLRSKVAKRFGLD 37 (81)
T ss_pred cEEE-EECCEEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 4445 2357778888999999999999999999643
No 70
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=88.69 E-value=0.57 Score=31.58 Aligned_cols=50 Identities=30% Similarity=0.368 Sum_probs=37.2
Q ss_pred eCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhc-CCcCCC
Q 048546 62 VMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYY-GIRDGD 124 (125)
Q Consensus 62 V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dy-GIkdGd 124 (125)
|.++.+|.|+++.+.....-..- -.|.|.++|++| +|...|++. |+++|.
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~------------Tn~~L~~~g~~L-~~~~el~~i~~~~~~~ 51 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYL------------TNFSLEHNGQRL-DDFVELSEIEGIKDGC 51 (76)
T ss_pred CChhhHHHHHHHHHHhCccccce------------eEEEEEECCCcc-CCchhhhhhhCCCCCc
Confidence 46678999999999886321111 368899999886 888888887 787764
No 71
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=86.63 E-value=0.54 Score=40.76 Aligned_cols=64 Identities=20% Similarity=0.352 Sum_probs=45.0
Q ss_pred CCCeEEEEEccCCcEEEEEe--CCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhc
Q 048546 43 EQPLKLSVRKLDGSCFDIEV--MKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYY 118 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V--~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dy 118 (125)
+-..++.|+.-+-+.-+++| +..-||++||.-.+..+...|-. ....|+|+| ||+.|...|+|.
T Consensus 7 e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~-----------~dqrliYsg-kllld~qcl~d~ 72 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLE-----------LDQRLIYSG-KLLLDHQCLTDW 72 (391)
T ss_pred CcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCch-----------hhHHHHhhc-cccccchhHHHH
Confidence 34567788666555555555 55689999999999976533321 344589999 888898888775
No 72
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=86.06 E-value=4 Score=32.08 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=24.1
Q ss_pred CCeEEEEEccCCcE---EEEEeCCCCcHHHHHHHHHHHhcC
Q 048546 44 QPLKLSVRKLDGSC---FDIEVMKTATIAELRQAVEAAFSH 81 (125)
Q Consensus 44 ~aMkltV~k~~g~~---~~V~V~~~ATV~dLK~aI~~~~~~ 81 (125)
..|+|+....+... +.+-|+.++||.||-+++++++..
T Consensus 19 k~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~ 59 (213)
T PF14533_consen 19 KQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGF 59 (213)
T ss_dssp --EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT---
T ss_pred eEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCC
Confidence 46888887655443 688899999999999999998764
No 73
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=85.56 E-value=2.5 Score=36.85 Aligned_cols=66 Identities=14% Similarity=0.264 Sum_probs=50.0
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEee--cCeeeccCcchhhhcCCcCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCY--NGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~--~g~KLl~D~~tL~dyGIkdG 123 (125)
=.|-|+-.||+.+-......-||.|++..|...-...+. .-|.|.. =.+.|.+|+.||++.|+.|-
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~------------~~F~L~~~FPpk~l~D~sqTle~AgL~Ns 373 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSS------------TYFILMMAFPPKPLSDDSQTLEEAGLLNS 373 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcC------------CceeeeecCCCcccCCcchhHHhccchhh
Confidence 456777799999877788889999999999996443321 2344443 36789999999999999873
No 74
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=85.54 E-value=4.3 Score=27.77 Aligned_cols=35 Identities=11% Similarity=0.220 Sum_probs=28.8
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSH 81 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~ 81 (125)
|+|.+ ..+|....+.++.+.+..||++.|.+.++.
T Consensus 1 ~~vK~-~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~ 35 (82)
T cd06407 1 VRVKA-TYGEEKIRFRLPPSWGFTELKQEIAKRFKL 35 (82)
T ss_pred CEEEE-EeCCeEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 34555 456778889999999999999999999874
No 75
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=84.82 E-value=2.9 Score=30.10 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=30.6
Q ss_pred EEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 47 KLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 47 kltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
-|.|-+.||+.-.+.++.++||.||=..+.+++-
T Consensus 4 ~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~ 37 (97)
T cd01775 4 CIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFY 37 (97)
T ss_pred EEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhc
Confidence 4677789999999999999999999999999974
No 76
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=84.09 E-value=6.1 Score=25.59 Aligned_cols=36 Identities=17% Similarity=0.406 Sum_probs=26.7
Q ss_pred eEEEEEccCCcEEE-EEeCCCCcHHHHHHHHHHHhcCC
Q 048546 46 LKLSVRKLDGSCFD-IEVMKTATIAELRQAVEAAFSHM 82 (125)
Q Consensus 46 MkltV~k~~g~~~~-V~V~~~ATV~dLK~aI~~~~~~~ 82 (125)
++|.+ ..+|...- +.++.+.|..+|+..|.+.|...
T Consensus 2 ~~vK~-~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~ 38 (84)
T PF00564_consen 2 VRVKV-RYGGDIRRIISLPSDVSFDDLRSKIREKFGLL 38 (84)
T ss_dssp EEEEE-EETTEEEEEEEECSTSHHHHHHHHHHHHHTTS
T ss_pred EEEEE-EECCeeEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 34555 33344444 88899999999999999999755
No 77
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=83.51 E-value=7.8 Score=25.69 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=19.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 56 SCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 56 ~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
....|+++ .+||.||.+.+.+.++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p 39 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYP 39 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCc
Confidence 34567777 8999999999998764
No 78
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=83.14 E-value=4.1 Score=26.80 Aligned_cols=24 Identities=17% Similarity=0.193 Sum_probs=19.8
Q ss_pred EEEEEeCCC-CcHHHHHHHHHHHhc
Q 048546 57 CFDIEVMKT-ATIAELRQAVEAAFS 80 (125)
Q Consensus 57 ~~~V~V~~~-ATV~dLK~aI~~~~~ 80 (125)
...++++.+ +||.||.+.+...++
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p 41 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGP 41 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCc
Confidence 356778877 899999999999764
No 79
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=81.06 E-value=4 Score=26.18 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=18.7
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHH
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAV 75 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI 75 (125)
|+|+| +|+.+++ +.+.||.||-+.+
T Consensus 1 m~i~v---Ng~~~~~--~~~~tl~~ll~~l 25 (66)
T PRK08053 1 MQILF---NDQPMQC--AAGQTVHELLEQL 25 (66)
T ss_pred CEEEE---CCeEEEc--CCCCCHHHHHHHc
Confidence 56666 7887555 7788999998754
No 80
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=79.96 E-value=10 Score=24.36 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=24.1
Q ss_pred CCcEEEEEeC-CCCcHHHHHHHHHHHhcCC
Q 048546 54 DGSCFDIEVM-KTATIAELRQAVEAAFSHM 82 (125)
Q Consensus 54 ~g~~~~V~V~-~~ATV~dLK~aI~~~~~~~ 82 (125)
+|....+.++ .++|..+|+..|.+.|+..
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~ 37 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLD 37 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCC
Confidence 4666677777 8999999999999999643
No 81
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=79.13 E-value=7.4 Score=28.70 Aligned_cols=38 Identities=32% Similarity=0.405 Sum_probs=34.1
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSH 81 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~ 81 (125)
+.+.+.|.-.||+...|.|..++||.|+-..+.+++..
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l 39 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGI 39 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 46788898999999999999999999999999998753
No 82
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=78.69 E-value=7 Score=29.17 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=15.2
Q ss_pred eCC-CCcHHHHHHHHHHHhc
Q 048546 62 VMK-TATIAELRQAVEAAFS 80 (125)
Q Consensus 62 V~~-~ATV~dLK~aI~~~~~ 80 (125)
|+. +.||.||++.+.+...
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~ 41 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIK 41 (122)
T ss_pred CCcccCcHHHHHHHHHHHHh
Confidence 454 7899999999988753
No 83
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=78.07 E-value=6.1 Score=25.34 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=19.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhc
Q 048546 58 FDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 58 ~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
..++++.+.||.||.+.+...+.
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~ 40 (80)
T cd00754 18 EELELPEGATVGELLDALEARYP 40 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCc
Confidence 56777888999999999998764
No 84
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=77.96 E-value=6.2 Score=25.70 Aligned_cols=27 Identities=30% Similarity=0.446 Sum_probs=20.4
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHH
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEA 77 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~ 77 (125)
|+|.| +|+. +++..++|+.+||+.+..
T Consensus 1 M~I~v---N~k~--~~~~~~~tl~~lr~~~k~ 27 (57)
T PF14453_consen 1 MKIKV---NEKE--IETEENTTLFELRKESKP 27 (57)
T ss_pred CEEEE---CCEE--EEcCCCcCHHHHHHhhCC
Confidence 55555 6776 556888999999998765
No 85
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=77.43 E-value=10 Score=24.08 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=31.9
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+| +|+.+.+ + .+||.+|-+.+.- .+ +....-.+++-+ . .....++-++|||+
T Consensus 1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l~~----~~-------------~~vavavN~~iv-~-~~~~~~~~L~dgD~ 55 (65)
T PRK06488 1 MKLFV---NGETLQT--E-ATTLALLLAELDY----EG-------------NWLATAVNGELV-H-KEARAQFVLHEGDR 55 (65)
T ss_pred CEEEE---CCeEEEc--C-cCcHHHHHHHcCC----CC-------------CeEEEEECCEEc-C-HHHcCccccCCCCE
Confidence 55655 7887766 3 4799999876521 11 123355666333 2 33444566777774
No 86
>PRK07440 hypothetical protein; Provisional
Probab=75.90 E-value=8 Score=25.41 Aligned_cols=57 Identities=23% Similarity=0.397 Sum_probs=34.5
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
+.|+|+| +|+. ++++...||.||=+.+. ..+ +...+..+|+-+ ....-.++-+++|
T Consensus 3 ~~m~i~v---NG~~--~~~~~~~tl~~lL~~l~----~~~-------------~~vav~~N~~iv--~r~~w~~~~L~~g 58 (70)
T PRK07440 3 NPITLQV---NGET--RTCSSGTSLPDLLQQLG----FNP-------------RLVAVEYNGEIL--HRQFWEQTQVQPG 58 (70)
T ss_pred CceEEEE---CCEE--EEcCCCCCHHHHHHHcC----CCC-------------CeEEEEECCEEe--CHHHcCceecCCC
Confidence 4678777 7886 55588899998876432 222 345566777444 2233444556666
Q ss_pred C
Q 048546 124 D 124 (125)
Q Consensus 124 d 124 (125)
|
T Consensus 59 D 59 (70)
T PRK07440 59 D 59 (70)
T ss_pred C
Confidence 6
No 87
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=74.65 E-value=3.9 Score=26.05 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=35.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 57 CFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 57 ~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
...++++..+||.||.+++...+..... . +.+.+..+| .+..+ .-.++-+++||+
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~---~--------~~~~v~vN~-~~v~~--~~~~~~l~~gD~ 67 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELAL---R--------DRVAVAVNG-EIVPD--DGLDTPLKDGDE 67 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHT---T--------TTEEEEETT-EEEGG--GTTTSBEETTEE
T ss_pred CeEEecCCCCcHHHHHHHHHhhcccccc---C--------ccEEEEECC-EEcCC--ccCCcCcCCCCE
Confidence 5567789999999999999987642210 0 234455566 55455 244555677763
No 88
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=73.30 E-value=3.6 Score=31.62 Aligned_cols=61 Identities=25% Similarity=0.191 Sum_probs=38.0
Q ss_pred CCCcHHHHHHHHHHHhcCCCCCCC---------CcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 64 KTATIAELRQAVEAAFSHMPKTGP---------GKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 64 ~~ATV~dLK~aI~~~~~~~~~~g~---------~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
.+||..||-..|.+.....+..|- .+=+=+|+=|..-....|.|..+|++||.+.+++=||
T Consensus 60 ~datL~ELtsLvkevnpeaR~kgt~f~fa~Vf~d~~~~~y~~RevG~t~~g~Kg~ddnktL~~~kf~iGD 129 (151)
T KOG3391|consen 60 MDATLRELTSLVKEVNPEARKKGTSFDFAVVFPDKKSPRYIVREVGTTCLGRKGIDDNKTLQQTKFEIGD 129 (151)
T ss_pred hhhhHHHHHHHHHHcCHHHhccCceEEEEEEeccCCCCCceeeeecccccCcccCCccchhhhCCccccc
Confidence 369999999999885432222110 0000112223333344478999999999999999887
No 89
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=72.83 E-value=19 Score=23.28 Aligned_cols=34 Identities=29% Similarity=0.277 Sum_probs=26.6
Q ss_pred EEEEccCCc----EEEEEeCCCCcHHHHHHHHHHHhcC
Q 048546 48 LSVRKLDGS----CFDIEVMKTATIAELRQAVEAAFSH 81 (125)
Q Consensus 48 ltV~k~~g~----~~~V~V~~~ATV~dLK~aI~~~~~~ 81 (125)
|.|-..++. .-.|.|+.++|+.|+=+++.++|..
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l 42 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGL 42 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTT
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 334345555 6688899999999999999999865
No 90
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=70.21 E-value=7.1 Score=35.49 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=31.0
Q ss_pred eeeeecCCCCCC-----CeEEEEEccCC--cEEEEEeCCCCcHHHHHHHHHHHh
Q 048546 33 RKNFSYNKLPEQ-----PLKLSVRKLDG--SCFDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 33 ~~~~~~~~~~~~-----aMkltV~k~~g--~~~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
+-+|+..+|-.+ .|+|.|.-.++ ..++|.|-.-.||.+.|+.|-.++
T Consensus 172 rYTLnE~~LLre~id~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDav 225 (539)
T PF08337_consen 172 RYTLNEDKLLREQIDYKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAV 225 (539)
T ss_dssp TT-SSCCCB--SSS-S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHH
T ss_pred eeeechhhhhccccceEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHH
Confidence 444555555444 47777654432 458999988899999999888764
No 91
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=68.88 E-value=16 Score=27.83 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=29.9
Q ss_pred eEEEEEccCCcEEEEEeCC-CCcHHHHHHH-HHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhh
Q 048546 46 LKLSVRKLDGSCFDIEVMK-TATIAELRQA-VEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKY 117 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~-~ATV~dLK~a-I~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~d 117 (125)
||||| +.....+-|-+.+ +-||.+|=++ +.++.+....... +|-+| ..|.+.+-.|++.++-|.|
T Consensus 1 mkvtV-~fg~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~~~~~---~~v~V---~~l~~~dggiLd~DD~l~d 67 (145)
T PF12053_consen 1 MKVTV-CFGRTRVVVPCGDGQLTVRDLIQQALRRYRKAKEKDPD---YWVVV---HHLEYTDGGILDPDDVLCD 67 (145)
T ss_dssp -EEEE-EETTEEEEEEESSS---HHHHHHHHHHHHHHHTT--TT---S-EEE---EEEE-SSS-EE-TTS-HHH
T ss_pred CeEEE-EeCCeEEEEEeCCCCccHHHHHHHHhHhHHHhhccCCC---ceEEE---eeEEecCCceeccccceeE
Confidence 88999 5556666666654 4899999664 4443333322111 35444 2233332257777766655
No 92
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=68.87 E-value=34 Score=24.02 Aligned_cols=56 Identities=20% Similarity=0.343 Sum_probs=33.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeec--C-eeeccCcchhhhcCCcCCC
Q 048546 57 CFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYN--G-QKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 57 ~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~--g-~KLl~D~~tL~dyGIkdGd 124 (125)
..........||+.+++.+.+.|.. ++ .. ++|. .|. + +.|.+.+.||.|.||.+|.
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~-E~------RLW~----~~~~~~~e~L~~~~~Tv~da~L~~gQ 73 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QE-ET------RLWN----KYSENSYELLNNPEITVEDAGLYDGQ 73 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS--E------EEEE----ECTTTCEEEE--TTSBTTTTT--TTE
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-Cc-cc------eehh----ccCCcchhhhCCCCccHHHccCcCCC
Confidence 3456678889999999999999976 22 11 2333 333 2 3455666799999998873
No 93
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=67.58 E-value=19 Score=24.86 Aligned_cols=39 Identities=26% Similarity=0.241 Sum_probs=30.4
Q ss_pred CCCCCCeEEEEEcc-CCcEEEEEeCCCCcHHHHHHHHHHH
Q 048546 40 KLPEQPLKLSVRKL-DGSCFDIEVMKTATIAELRQAVEAA 78 (125)
Q Consensus 40 ~~~~~aMkltV~k~-~g~~~~V~V~~~ATV~dLK~aI~~~ 78 (125)
++....++|+|... ++..+.+.|+.+.|+.+|-+.+-++
T Consensus 11 k~~~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k 50 (106)
T PF00794_consen 11 KLQNNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKK 50 (106)
T ss_dssp TSSSSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHH
T ss_pred hCCCCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHH
Confidence 45567899999777 5667899999999999998866665
No 94
>PF06487 SAP18: Sin3 associated polypeptide p18 (SAP18); InterPro: IPR010516 This family consists of several eukaryotic Sin3 associated polypeptide p18 (SAP18) sequences. SAP18 is known to be a component of the Sin3-containing complex, which is responsible for the repression of transcription via the modification of histone polypeptides []. SAP18 is also present in the ASAP complex which is thought to be involved in the regulation of splicing during the execution of programmed cell death [].; PDB: 2HDE_A 4A90_A 4A6Q_A 4A8X_C.
Probab=67.29 E-value=11 Score=27.66 Aligned_cols=69 Identities=17% Similarity=0.109 Sum_probs=37.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCC----Ccccc-----cccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 56 SCFDIEVMKTATIAELRQAVEAAFSHMPKTGP----GKISW-----PHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 56 ~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~----~~IsW-----~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
.++.|=.=.+||..||=..|.......+..|. +.|.+ +|+=+.+-.++.|.+..+|++||.+.+..-||
T Consensus 37 ~elqIYtW~d~TLrEL~~Lik~~~~~~r~~~tr~~F~~VypD~~~~r~~~kdlGsv~~g~~~~d~~kTL~~~~F~iGD 114 (120)
T PF06487_consen 37 NELQIYTWMDATLRELADLIKDVNPPARRRGTRLSFRLVYPDTRSGRYVSKDLGSVVSGRKGPDDNKTLADLRFVIGD 114 (120)
T ss_dssp TEEEEEE-TT-BHHHHHHHHHHH-HHHHSTT-EEEEEEEEECTTTTCEEEEEEEEEETTB--TTTTSBCGGGT--TT-
T ss_pred CeeEEEEcccCCHHHHHHHHHHhCcccCCCCCEEEEEEEeecCCCCceeeecCCeEECCCCCCCcccCHhhCCcccCC
Confidence 34444457799999999988886432222111 01111 23334556667777778999999999999887
No 95
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=67.09 E-value=31 Score=24.63 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=32.6
Q ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhh
Q 048546 60 IEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKY 117 (125)
Q Consensus 60 V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~d 117 (125)
.-||.+.||++|...|.+..+..++ ..+.|..++ .|...+.++.+
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~------------~alfl~Vn~-~lp~~s~tm~e 81 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPE------------QALFLFVNN-TLPSTSSTMGE 81 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TT------------S-EEEEBTT-BESSTTSBHHH
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCC------------ceEEEEEcC-cccchhhHHHH
Confidence 4579999999999999998765443 456666666 77777777764
No 96
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=66.20 E-value=8.5 Score=33.66 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=43.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccC-cchhhhcCCcCCC
Q 048546 54 DGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICE-NDNIKYYGIRDGD 124 (125)
Q Consensus 54 ~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D-~~tL~dyGIkdGd 124 (125)
.-+.|+++|..+-....|+.-+......+. ...-|+|++-++..+ ...|.++|.++||
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~-------------~~~~li~n~~~l~s~~s~~l~Q~g~~~~d 69 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVY-------------DPSDLIYNPRPLVSNESQGLTQIGLKDGD 69 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCccc-------------chhhcccCCCccccchhhhhhhcccccce
Confidence 566788989888888888888777643222 123477888788777 7899999999997
No 97
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=64.43 E-value=37 Score=22.17 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.8
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhcC
Q 048546 55 GSCFDIEVMKTATIAELRQAVEAAFSH 81 (125)
Q Consensus 55 g~~~~V~V~~~ATV~dLK~aI~~~~~~ 81 (125)
+....|.|+.++|..|+=+++.++|..
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l 38 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGL 38 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 666789999999999999999999863
No 98
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=62.41 E-value=15 Score=24.62 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=16.7
Q ss_pred EEeCCCCcHHHHHHHHHHHhcCC
Q 048546 60 IEVMKTATIAELRQAVEAAFSHM 82 (125)
Q Consensus 60 V~V~~~ATV~dLK~aI~~~~~~~ 82 (125)
|.+|. |+.||.+...++|...
T Consensus 22 i~lP~--SleeLl~ia~~kfg~~ 42 (69)
T PF11834_consen 22 IWLPD--SLEELLKIASEKFGFS 42 (69)
T ss_pred EEcCc--cHHHHHHHHHHHhCCC
Confidence 44465 9999999999999743
No 99
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=62.26 E-value=2.5 Score=35.92 Aligned_cols=106 Identities=12% Similarity=0.211 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCccccceeeccccc-------e--ee-eecCCCC--CCCeEEEEEccCCcEEEEEeCC-----CCcHHHH
Q 048546 9 FSPRISVDSPRHSGALSLMIGGFS-------R--KN-FSYNKLP--EQPLKLSVRKLDGSCFDIEVMK-----TATIAEL 71 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~-~~~~~~~--~~aMkltV~k~~g~~~~V~V~~-----~ATV~dL 71 (125)
|-++.....||+++..+..-+--. . .. ..-...| ...|.|+++..-+-.+.+.++. +.||.|+
T Consensus 30 ~~~~~py~Lprl~~~~~p~m~k~~~~~~~~~~~~s~~~~~~~aPgs~~sItV~Lks~rnp~l~i~L~~~~plattSv~dl 109 (309)
T PF12754_consen 30 YPARTPYTLPRLPSPPHPPMPKKLQLQRRSTHSASAFAKQTPAPGSSKSITVHLKSLRNPPLDISLPNVPPLATTSVQDL 109 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCccCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCCceEEEEeecCCCCCceeEeCCCCcCCcCcHHHH
Confidence 455677778888885554221000 0 00 0111122 2358888888888777666432 5899999
Q ss_pred HHHHHHHhc-CCCCCCCCcccccccccceE-----EeecCeeeccCcchhhhcC
Q 048546 72 RQAVEAAFS-HMPKTGPGKISWPHVWGHFC-----LCYNGQKLICENDNIKYYG 119 (125)
Q Consensus 72 K~aI~~~~~-~~~~~g~~~IsW~~VW~q~~-----L~~~g~KLl~D~~tL~dyG 119 (125)
|.+++..+. .+-..+..+|.- ..+- |.|+.+.+ -|+++|.+..
T Consensus 110 k~~v~~rv~~~~~~~~~~~vp~----dKik~~~~~lL~~kkPv-~~~ktl~e~l 158 (309)
T PF12754_consen 110 KDAVQQRVHPSQATYDETRVPL----DKIKNFRCRLLYKKKPV-GDSKTLAEVL 158 (309)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHhhhcccccccccccCCH----HHhhhhhhhheecCccC-CCcCcHHHHH
Confidence 999999653 111000000000 1222 55666454 7888888874
No 100
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=62.03 E-value=5 Score=28.46 Aligned_cols=38 Identities=16% Similarity=0.419 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHH---HHHHHHHhcCCCCCCCCcccccccccc
Q 048546 57 CFDIEVMKTATIAEL---RQAVEAAFSHMPKTGPGKISWPHVWGH 98 (125)
Q Consensus 57 ~~~V~V~~~ATV~dL---K~aI~~~~~~~~~~g~~~IsW~~VW~q 98 (125)
.++|.+|.+....++ |..=.+........|. |+|+||-
T Consensus 5 ~m~V~~P~~~~~~~~~~i~a~Eka~a~eLq~~Gk----~~~lWRv 45 (90)
T TIGR03221 5 RMDVNLPVDMPAEKAAAIKAREKAYAQELQREGK----WRHLWRV 45 (90)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHHHHHHHhCCc----eEEEEEe
Confidence 367888888555444 4332222222223343 8888873
No 101
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=61.84 E-value=14 Score=25.30 Aligned_cols=26 Identities=19% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhcCCC
Q 048546 58 FDIEVMKTATIAELRQAVEAAFSHMP 83 (125)
Q Consensus 58 ~~V~V~~~ATV~dLK~aI~~~~~~~~ 83 (125)
+++.|+.+||+.|+|+.+=+....+|
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~P 27 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYP 27 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGST
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCC
Confidence 46888999999999998777654444
No 102
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=61.52 E-value=26 Score=28.77 Aligned_cols=66 Identities=15% Similarity=0.312 Sum_probs=42.1
Q ss_pred eEEEEEccCCc-EEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecC-----eeeccCcchhhhcC
Q 048546 46 LKLSVRKLDGS-CFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNG-----QKLICENDNIKYYG 119 (125)
Q Consensus 46 MkltV~k~~g~-~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g-----~KLl~D~~tL~dyG 119 (125)
++|.|-+.... .++...+.+.||++||..++-...-.+.. +. .-.|+| -.|.++++.|..|+
T Consensus 2 v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~-M~-----------l~l~~~~d~~~~~lsn~d~~lg~~~ 69 (234)
T KOG3206|consen 2 VRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAES-ME-----------LELYDGDDKKVSALSNEDADLGFYK 69 (234)
T ss_pred eEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccc-eE-----------EEEEcCCCceeeeccCCcccccccC
Confidence 34555333222 25666789999999999999976433321 10 112222 27788889999999
Q ss_pred CcCC
Q 048546 120 IRDG 123 (125)
Q Consensus 120 IkdG 123 (125)
..||
T Consensus 70 ~~Dg 73 (234)
T KOG3206|consen 70 VEDG 73 (234)
T ss_pred CCCc
Confidence 8887
No 103
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=61.30 E-value=19 Score=23.33 Aligned_cols=55 Identities=25% Similarity=0.338 Sum_probs=30.9
Q ss_pred eEEEEEccCCcEEEEEeCCC-CcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKT-ATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~-ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
|+|+| +|+.+. ++.+ .||.||=+.+. ..+ +...+..+|+-+ ..+.-.++-+++||
T Consensus 1 m~I~v---NG~~~~--~~~~~~tv~~lL~~l~----~~~-------------~~vav~vN~~iv--~r~~w~~~~L~~gD 56 (67)
T PRK07696 1 MNLKI---NGNQIE--VPESVKTVAELLTHLE----LDN-------------KIVVVERNKDIL--QKDDHTDTSVFDGD 56 (67)
T ss_pred CEEEE---CCEEEE--cCCCcccHHHHHHHcC----CCC-------------CeEEEEECCEEe--CHHHcCceecCCCC
Confidence 55555 788754 4665 68988876432 222 234456666444 23344555567766
No 104
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=59.93 E-value=22 Score=25.40 Aligned_cols=50 Identities=20% Similarity=0.193 Sum_probs=32.6
Q ss_pred eeeccccceeeeecCCCCCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHH
Q 048546 25 SLMIGGFSRKNFSYNKLPEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAA 78 (125)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~ 78 (125)
++++.+++-..-.-| ..=-+.|--.+|..|.|+||.+--+..-|++|++-
T Consensus 19 ~ln~~i~syteslag----krem~iitf~ngatfqvevpgsqhi~sqkk~ierm 68 (102)
T PF01376_consen 19 TLNDKIFSYTESLAG----KREMVIITFKNGATFQVEVPGSQHIDSQKKAIERM 68 (102)
T ss_dssp EEEEEESEEEEEEST----TEEEEEEEETTS-EEEE--SSTTSTTTHHHHHHHH
T ss_pred ehhHHHHHHHHhhcC----ceeEEEEEecCCcEEEEecCCccchhhhHHHHHHH
Confidence 344455555554455 33334455788999999999999999999999985
No 105
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=59.26 E-value=35 Score=22.48 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=13.8
Q ss_pred CCcHHHHHHHHHHHhc
Q 048546 65 TATIAELRQAVEAAFS 80 (125)
Q Consensus 65 ~ATV~dLK~aI~~~~~ 80 (125)
.+||.||++.+.+.++
T Consensus 25 ~~tv~~l~~~L~~~~~ 40 (81)
T PRK11130 25 FPTVEALRQHLAQKGD 40 (81)
T ss_pred CCCHHHHHHHHHHhCc
Confidence 5899999999998763
No 106
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=59.03 E-value=15 Score=22.90 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=18.9
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHH
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVE 76 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~ 76 (125)
|+|+| +|+. ++++..+||.||-+++.
T Consensus 1 m~i~v---Ng~~--~~~~~~~tl~~ll~~l~ 26 (65)
T PRK06944 1 MDIQL---NQQT--LSLPDGATVADALAAYG 26 (65)
T ss_pred CEEEE---CCEE--EECCCCCcHHHHHHhhC
Confidence 55555 7776 45588899999988653
No 107
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=57.23 E-value=10 Score=27.41 Aligned_cols=29 Identities=14% Similarity=0.359 Sum_probs=23.4
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHH
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAV 75 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI 75 (125)
|+|.| +.+++.+.+++.++.|..+|.+++
T Consensus 1 mkI~i-~i~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKI-TIGGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEE-EETTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEE-EECCEEEEEEECCCHHHHHHHHhC
Confidence 67777 667999999999998888887765
No 108
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=57.08 E-value=16 Score=23.07 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=30.4
Q ss_pred cCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 53 LDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 53 ~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
.+|+.++ ++.++||.||.+.+.- .+ +...+..+|+-+. .+.-.++-+++||+
T Consensus 3 iNg~~~~--~~~~~tv~~ll~~l~~----~~-------------~~v~v~vN~~iv~--~~~~~~~~L~~gD~ 54 (64)
T TIGR01683 3 VNGEPVE--VEDGLTLAALLESLGL----DP-------------RRVAVAVNGEIVP--RSEWDDTILKEGDR 54 (64)
T ss_pred ECCeEEE--cCCCCcHHHHHHHcCC----CC-------------CeEEEEECCEEcC--HHHcCceecCCCCE
Confidence 4677644 4788999999886532 12 2345566774442 22233445777763
No 109
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=55.12 E-value=58 Score=21.42 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhcC
Q 048546 55 GSCFDIEVMKTATIAELRQAVEAAFSH 81 (125)
Q Consensus 55 g~~~~V~V~~~ATV~dLK~aI~~~~~~ 81 (125)
+....|.|..++|+.|+=+++.++|+.
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l 41 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHL 41 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 666789999999999999999998863
No 110
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=55.05 E-value=22 Score=23.01 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=20.4
Q ss_pred eEEEEEccCCc--EEEEEeCCCCcHHHHHHHH
Q 048546 46 LKLSVRKLDGS--CFDIEVMKTATIAELRQAV 75 (125)
Q Consensus 46 MkltV~k~~g~--~~~V~V~~~ATV~dLK~aI 75 (125)
|+|.+ +|+ ...++++.++||.||-+.+
T Consensus 5 m~v~v---ng~~~~~~~~~~~~~tv~~ll~~l 33 (70)
T PRK08364 5 IRVKV---IGRGIEKEIEWRKGMKVADILRAV 33 (70)
T ss_pred EEEEE---eccccceEEEcCCCCcHHHHHHHc
Confidence 55555 454 5678889999999998776
No 111
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=55.04 E-value=49 Score=23.31 Aligned_cols=39 Identities=10% Similarity=-0.015 Sum_probs=29.3
Q ss_pred CCCCCCeEEEEEccC-CcEEEEEeCCCCcHHHHHHHHHHH
Q 048546 40 KLPEQPLKLSVRKLD-GSCFDIEVMKTATIAELRQAVEAA 78 (125)
Q Consensus 40 ~~~~~aMkltV~k~~-g~~~~V~V~~~ATV~dLK~aI~~~ 78 (125)
+.....+.|.|...+ ...+.+.|+.++|+.+|-+.+-++
T Consensus 12 k~~~~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k 51 (108)
T smart00144 12 KTIANKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTK 51 (108)
T ss_pred cccCCeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHH
Confidence 455567788886554 345889999999999999966665
No 112
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=53.96 E-value=14 Score=23.31 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=17.6
Q ss_pred eEEEEEccCCcEEEEEe---CCCCcHHH
Q 048546 46 LKLSVRKLDGSCFDIEV---MKTATIAE 70 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V---~~~ATV~d 70 (125)
|.|++++.||..|.|.. ..+.|+.+
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ 28 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKN 28 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHH
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHH
Confidence 67899999999998872 33445443
No 113
>PF07929 PRiA4_ORF3: Plasmid pRiA4b ORF-3-like protein; InterPro: IPR012912 Members of this family are similar to the protein product of ORF-3 (Q44206 from SWISSPROT) found on plasmid pRiA4 in the bacterium Agrobacterium rhizogenes. This plasmid is responsible for tumourigenesis at wound sites of plants infected by this bacterium, but the ORF-3 product does not seem to be involved in the pathogenetic process []. Other proteins found in this family are annotated as being putative TnpR resolvases (Q9LCU7 from SWISSPROT, Q50439 from SWISSPROT), but no further evidence was found to back this. Moreover, another member of this family is described as a probable lexA repressor (Q7UEI4 from SWISSPROT) and in fact carries a LexA DNA binding domain (IPR006199 from INTERPRO), but no references were found to expand on this. ; PDB: 2I1S_A.
Probab=53.90 E-value=30 Score=25.96 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.4
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhc
Q 048546 58 FDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 58 ~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
-.|.|+.++|..+|=.+|+.+|.
T Consensus 20 Rri~Vp~~~tl~~Lh~~Iq~afg 42 (179)
T PF07929_consen 20 RRIEVPADITLADLHEVIQAAFG 42 (179)
T ss_dssp EEEEEETT-BHHHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHHhC
Confidence 48999999999999999999986
No 114
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=53.74 E-value=39 Score=30.50 Aligned_cols=65 Identities=22% Similarity=0.410 Sum_probs=46.1
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhc--CCCCCCCCcccccccccceEEeec--Ceee---ccCcchhhhc
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFS--HMPKTGPGKISWPHVWGHFCLCYN--GQKL---ICENDNIKYY 118 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~--~~~~~g~~~IsW~~VW~q~~L~~~--g~KL---l~D~~tL~dy 118 (125)
|-+.++...|.. .|+|.++.+.+-|-..+-.-|. +.| +|+.+|-+ |+.. +..+.|+.|.
T Consensus 1 Mi~rfRsk~G~~-Rve~qe~d~lg~l~~kll~~~~~n~~~-------------e~~svc~~p~~qG~~~s~l~dqt~~dl 66 (571)
T COG5100 1 MIFRFRSKEGQR-RVEVQESDVLGMLSPKLLAFFEVNYSP-------------EQISVCSAPDGQGEIFSLLKDQTPDDL 66 (571)
T ss_pred CeEEEecCCCce-eeeccccchhhhhhHHHHhhhccCCCc-------------cceEEEeCCCCCceeeecccccChhhh
Confidence 557777777766 7888999888888777777654 333 35555543 3444 4566799999
Q ss_pred CCcCCC
Q 048546 119 GIRDGD 124 (125)
Q Consensus 119 GIkdGd 124 (125)
|++.|+
T Consensus 67 GL~hGq 72 (571)
T COG5100 67 GLRHGQ 72 (571)
T ss_pred ccccCc
Confidence 999997
No 115
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=53.69 E-value=26 Score=28.12 Aligned_cols=36 Identities=8% Similarity=0.147 Sum_probs=29.4
Q ss_pred CCeEEEEEccCC---------cEEEEEeCCCCcHHHHHHHHHHHh
Q 048546 44 QPLKLSVRKLDG---------SCFDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 44 ~aMkltV~k~~g---------~~~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
+.|+|.|.+-+. +.|.|+++++.||.|+=..|....
T Consensus 3 ~~~~~~i~R~~p~~~~~~~~~~~y~v~~~~~~tvLdaL~~Ik~~~ 47 (239)
T PRK13552 3 RTLTFNIFRYNPQDPGSKPHMVTYQLEETPGMTLFIALNRIREEQ 47 (239)
T ss_pred ceEEEEEEeeCCCCCCCCcceEEEEecCCCCCCHHHHHHHHHhcC
Confidence 568999988763 337898999999999999999853
No 116
>PRK08453 fliD flagellar capping protein; Validated
Probab=53.35 E-value=23 Score=33.09 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=22.4
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHH
Q 048546 54 DGSCFDIEVMKTATIAELRQAVEA 77 (125)
Q Consensus 54 ~g~~~~V~V~~~ATV~dLK~aI~~ 77 (125)
+|+.+.|+|+...|+.||+++|-.
T Consensus 136 ~G~~~sIdi~~gtTL~~L~~~INd 159 (673)
T PRK08453 136 QGKDYAIDIKAGMTLGDVAQSITD 159 (673)
T ss_pred CCEEEEEEeCCCCcHHHHHHHhcC
Confidence 499999999999999999999994
No 117
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=52.06 E-value=28 Score=23.62 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhc-CCCC
Q 048546 56 SCFDIEVMKTATIAELRQAVEAAFS-HMPK 84 (125)
Q Consensus 56 ~~~~V~V~~~ATV~dLK~aI~~~~~-~~~~ 84 (125)
++|=+-.+++.|+.+|+..|.++|. .||.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~ 32 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPN 32 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCC
Confidence 3454557889999999999999986 4654
No 118
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=51.98 E-value=22 Score=22.41 Aligned_cols=52 Identities=27% Similarity=0.362 Sum_probs=30.3
Q ss_pred cCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 53 LDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 53 ~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
.+|+.+ +++..+||.||.+.+.- .+ +.+....+|+-+ . .+.-.++-+++||+
T Consensus 4 iNg~~~--~~~~~~tv~~ll~~l~~----~~-------------~~i~V~vNg~~v-~-~~~~~~~~L~~gD~ 55 (65)
T cd00565 4 VNGEPR--EVEEGATLAELLEELGL----DP-------------RGVAVALNGEIV-P-RSEWASTPLQDGDR 55 (65)
T ss_pred ECCeEE--EcCCCCCHHHHHHHcCC----CC-------------CcEEEEECCEEc-C-HHHcCceecCCCCE
Confidence 367764 45788999999887642 11 234556777433 2 22233345777764
No 119
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=51.61 E-value=50 Score=23.06 Aligned_cols=36 Identities=11% Similarity=0.226 Sum_probs=30.3
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSH 81 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~ 81 (125)
.|+|.| ...|...-+.|+.+.+..||...|...|+.
T Consensus 2 ~ikVKv-~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~ 37 (86)
T cd06408 2 KIRVKV-HAQDDTRYIMIGPDTGFADFEDKIRDKFGF 37 (86)
T ss_pred cEEEEE-EecCcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 467777 456778889999999999999999999874
No 120
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=50.21 E-value=23 Score=24.39 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=19.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhcCC
Q 048546 58 FDIEVMKTATIAELRQAVEAAFSHM 82 (125)
Q Consensus 58 ~~V~V~~~ATV~dLK~aI~~~~~~~ 82 (125)
+.+.|+.+||+.|+|+.+-+..+.+
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~~~ 26 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQARKM 26 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHHhC
Confidence 4678899999999999887754433
No 121
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=49.12 E-value=74 Score=22.01 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhcCCC
Q 048546 57 CFDIEVMKTATIAELRQAVEAAFSHMP 83 (125)
Q Consensus 57 ~~~V~V~~~ATV~dLK~aI~~~~~~~~ 83 (125)
.+.|.|+.+.+..+|.+.|.++++..+
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~ 38 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPA 38 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 678889999999999999999986543
No 122
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=48.74 E-value=87 Score=21.90 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=29.2
Q ss_pred EEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 47 KLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 47 kltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
-|.|-..||++..|.|+...|+.|+=+.+..+.+
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h 37 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNH 37 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhC
Confidence 3566679999999999999999999998888764
No 123
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=48.03 E-value=39 Score=27.36 Aligned_cols=35 Identities=14% Similarity=0.330 Sum_probs=28.3
Q ss_pred CCeEEEEEccCC-------cEEEEEeCCCCcHHHHHHHHHHH
Q 048546 44 QPLKLSVRKLDG-------SCFDIEVMKTATIAELRQAVEAA 78 (125)
Q Consensus 44 ~aMkltV~k~~g-------~~~~V~V~~~ATV~dLK~aI~~~ 78 (125)
..|+|.|.+.++ +.|.|+++++.||.|+=..|...
T Consensus 4 ~~~~~~i~R~~~~~~~~~~q~y~v~~~~~~tvLdaL~~I~~~ 45 (249)
T PRK08640 4 KTVRLIIKRQDGPDSKPYWEEFEIPYRPNMNVISALMEIRRN 45 (249)
T ss_pred cEEEEEEEeeCCCCCCceeEEEEecCCCCCcHHHHHHHHHhc
Confidence 467888887763 33788888999999999999774
No 124
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=47.87 E-value=36 Score=23.42 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 56 SCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 56 ~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
..+.+.|+.+||=.|+|++|+..|.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~ 45 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYG 45 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcC
Confidence 4578899999999999999999986
No 125
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=46.49 E-value=88 Score=20.99 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=45.6
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEE--eecCeeec--cCcchhhhcC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCL--CYNGQKLI--CENDNIKYYG 119 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L--~~~g~KLl--~D~~tL~dyG 119 (125)
+..+|.|+--+|+.+.-.-..++|+.+|-..|... .++. +.|.| .|=-+.+. +.+.||.+.|
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~--~~~~------------~~f~L~t~fPRk~~~~~d~~~TL~e~g 68 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK--GYPI------------DEYKLLSSWPRRDLTQLDPNFTLLELK 68 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc--CCCC------------CCEEEecCCCCCCCcCCCCCCcHHHcC
Confidence 57899999999998877788999999999999763 1111 22333 23333332 3457999999
Q ss_pred CcCC
Q 048546 120 IRDG 123 (125)
Q Consensus 120 IkdG 123 (125)
+...
T Consensus 69 L~p~ 72 (80)
T cd01771 69 LYPQ 72 (80)
T ss_pred CCCC
Confidence 8654
No 126
>CHL00030 rpl23 ribosomal protein L23
Probab=46.03 E-value=38 Score=23.85 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=23.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 55 GSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 55 g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
...+.+.|+.+||=.|.|+||+..|.
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~ 44 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFG 44 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999999886
No 127
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=45.92 E-value=41 Score=22.88 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhcC
Q 048546 56 SCFDIEVMKTATIAELRQAVEAAFSH 81 (125)
Q Consensus 56 ~~~~V~V~~~ATV~dLK~aI~~~~~~ 81 (125)
..+.+.|+.+||=.|.|+||+..|..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~V 40 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDV 40 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 57889999999999999999999863
No 128
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=45.81 E-value=36 Score=25.28 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=37.0
Q ss_pred CCeEEEEEccCCc--EEEE-EeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhh
Q 048546 44 QPLKLSVRKLDGS--CFDI-EVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKY 117 (125)
Q Consensus 44 ~aMkltV~k~~g~--~~~V-~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~d 117 (125)
..+=|.|-+.+.+ +--. -||.+.||+++...|.+..+..++ ++.|..++ .|..-+.++.+
T Consensus 26 drIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~-------------k~flfVnn-~lp~~s~~mg~ 88 (121)
T PTZ00380 26 GHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAK-------------KVTLAIEG-STPAVTATVGD 88 (121)
T ss_pred CccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChh-------------HEEEEECC-ccCCccchHHH
Confidence 4455555554421 1123 579999999999999998765553 34344444 56565656553
No 129
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=45.65 E-value=98 Score=21.27 Aligned_cols=66 Identities=21% Similarity=0.205 Sum_probs=44.1
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeec--Ceee--ccCcchhhhcC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYN--GQKL--ICENDNIKYYG 119 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~--g~KL--l~D~~tL~dyG 119 (125)
+.=+|.|+--+|+.+.-....+.|+.+|-..|... ...+ ..|.|+-+ -+.+ .+.+.||.+.|
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~-g~~~-------------~~f~L~t~FPRr~~~~~d~~~TL~e~G 69 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQSK-GYPN-------------ERFELLTNFPRRKLSHLDYDITLQEAG 69 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCC-------------CCEEEecCCCCcccCCcccCCCHHHcC
Confidence 34589999999999888888889999999988873 1111 12222221 2122 23357999999
Q ss_pred CcCC
Q 048546 120 IRDG 123 (125)
Q Consensus 120 IkdG 123 (125)
+...
T Consensus 70 L~P~ 73 (82)
T cd01773 70 LCPQ 73 (82)
T ss_pred CCCC
Confidence 8764
No 130
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.86 E-value=18 Score=29.66 Aligned_cols=58 Identities=17% Similarity=0.300 Sum_probs=42.1
Q ss_pred ccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 52 KLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 52 k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
+..++.|-..++.-.||.++|.+.+.+-...+- . |. ..|+| +++-|+..|..++|..|
T Consensus 153 TtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~-s-----------Qr-if~Sg-~~l~dkt~LeEc~iekg 210 (231)
T KOG0013|consen 153 TTTREDFWLTAPHYDTVGEIKRALRAAEGVDPL-S-----------QR-IFFSG-GVLVDKTDLEECKIEKG 210 (231)
T ss_pred hhhhhheeecccCcCcHHHHHHHHHHhhccchh-h-----------he-eeccC-CceeccccceeeeecCC
Confidence 334666778888889999999999997433321 1 11 34667 66788999999999887
No 131
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=44.76 E-value=40 Score=24.00 Aligned_cols=29 Identities=28% Similarity=0.258 Sum_probs=24.6
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhcCC
Q 048546 54 DGSCFDIEVMKTATIAELRQAVEAAFSHM 82 (125)
Q Consensus 54 ~g~~~~V~V~~~ATV~dLK~aI~~~~~~~ 82 (125)
+...+.+.|+.+||=.|+|+||++.|...
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~Vk 48 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVK 48 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCe
Confidence 34567889999999999999999998733
No 132
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=44.40 E-value=29 Score=22.14 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=17.5
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHH
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAV 75 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI 75 (125)
|+|+| +|+.+++ +.++||.||=+..
T Consensus 1 m~i~v---NG~~~~~--~~~~tl~~ll~~l 25 (65)
T PRK05863 1 MIVVV---NEEQVEV--DEQTTVAALLDSL 25 (65)
T ss_pred CEEEE---CCEEEEc--CCCCcHHHHHHHc
Confidence 55666 7887555 6788988886643
No 133
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=42.15 E-value=1.3e+02 Score=21.65 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=31.4
Q ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhh
Q 048546 60 IEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKY 117 (125)
Q Consensus 60 V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~d 117 (125)
..|+.+.||+++...|.+..+..++ ..+.|..++ .+...+.++.+
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~------------~slfl~Vn~-~~p~~~~~~~~ 89 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPE------------KALFLFVNN-SLPPTSATMSQ 89 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCcc------------ceEEEEECC-ccCCchhHHHH
Confidence 3579999999999999988764443 344455555 56666666654
No 134
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=41.94 E-value=66 Score=24.25 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=27.0
Q ss_pred CCCCCeEEEEEccCCcEEEEEeCCCCcHHHH
Q 048546 41 LPEQPLKLSVRKLDGSCFDIEVMKTATIAEL 71 (125)
Q Consensus 41 ~~~~aMkltV~k~~g~~~~V~V~~~ATV~dL 71 (125)
.+....+|+|...||+...|+++...|+.|.
T Consensus 31 ~~~g~v~I~~~~~dG~~~~v~~~~G~sLLea 61 (143)
T PTZ00490 31 STPGKVKVCVKKRDGTHCDVEVPVGMSLMHA 61 (143)
T ss_pred cCCCcEEEEEEcCCCCEEEEEECCCccHHHH
Confidence 3466899999999999999999999999885
No 135
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=41.89 E-value=35 Score=21.34 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=17.3
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHH
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAV 75 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI 75 (125)
|+|+| +|+. ++++...||.||=++.
T Consensus 1 m~i~v---NG~~--~~~~~~~tl~~lL~~l 25 (66)
T PRK05659 1 MNIQL---NGEP--RELPDGESVAALLARE 25 (66)
T ss_pred CEEEE---CCeE--EEcCCCCCHHHHHHhc
Confidence 55555 7886 4557889998876653
No 136
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=41.80 E-value=68 Score=22.14 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=22.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhcCCCC
Q 048546 58 FDIEVMKTATIAELRQAVEAAFSHMPK 84 (125)
Q Consensus 58 ~~V~V~~~ATV~dLK~aI~~~~~~~~~ 84 (125)
+.+.|+..++..+|...|.+++...++
T Consensus 9 Vai~v~~g~~y~~L~~~ls~kL~l~~~ 35 (78)
T cd06411 9 VALRAPRGADVSSLRALLSQALPQQAQ 35 (78)
T ss_pred EEEEccCCCCHHHHHHHHHHHhcCChh
Confidence 466789999999999999999876554
No 137
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=40.77 E-value=1.1e+02 Score=22.66 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=37.2
Q ss_pred eeeeecCCCCCCCeEEEEEccCCcE--EEEEeCCCCcHHHHHHHHHHHhc
Q 048546 33 RKNFSYNKLPEQPLKLSVRKLDGSC--FDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 33 ~~~~~~~~~~~~aMkltV~k~~g~~--~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
.=.++|+ +-|+...+-.+++. -.|-|..++|+.|+-+++-++|+
T Consensus 15 ~e~lef~----gvmrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk 60 (112)
T cd01782 15 TEDLEFH----GVMRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFR 60 (112)
T ss_pred CcccEEe----eEEEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhc
Confidence 5677888 89999997777654 37889999999999999999997
No 138
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=40.70 E-value=53 Score=22.71 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.7
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhcC
Q 048546 55 GSCFDIEVMKTATIAELRQAVEAAFSH 81 (125)
Q Consensus 55 g~~~~V~V~~~ATV~dLK~aI~~~~~~ 81 (125)
...+.+.|+.+||=.|.|+||+..|..
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~V 47 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDV 47 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCC
Confidence 356889999999999999999999863
No 139
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=40.25 E-value=86 Score=21.65 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=26.9
Q ss_pred EEEEEccCCcEEEEEeCC--CCcHHHHHHHHHHHhcCC
Q 048546 47 KLSVRKLDGSCFDIEVMK--TATIAELRQAVEAAFSHM 82 (125)
Q Consensus 47 kltV~k~~g~~~~V~V~~--~ATV~dLK~aI~~~~~~~ 82 (125)
+|.+ +-+|....+.+++ +-|..||++.|.+.|+..
T Consensus 2 ~vKa-ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 2 NLKV-TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEE-EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 4444 5567777788888 559999999999998644
No 140
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=39.83 E-value=55 Score=22.72 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=23.3
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 55 GSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 55 g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
...+.+.|+.+||=.|.|+||+..|.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~ 45 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFG 45 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcC
Confidence 45778899999999999999999886
No 141
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=39.78 E-value=1.3e+02 Score=20.90 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=22.5
Q ss_pred cCCcEEEEEeC-----CCCcHHHHHHHHHHHhcCCC
Q 048546 53 LDGSCFDIEVM-----KTATIAELRQAVEAAFSHMP 83 (125)
Q Consensus 53 ~~g~~~~V~V~-----~~ATV~dLK~aI~~~~~~~~ 83 (125)
.+|....+.++ .+.+..+|++.|.+.|+..+
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~ 42 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSP 42 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCC
Confidence 34555455555 36899999999999997544
No 142
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=39.23 E-value=17 Score=25.59 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHH---HhcCCCCCCCCccccccccc
Q 048546 57 CFDIEVMKTATIAELRQAVEA---AFSHMPKTGPGKISWPHVWG 97 (125)
Q Consensus 57 ~~~V~V~~~ATV~dLK~aI~~---~~~~~~~~g~~~IsW~~VW~ 97 (125)
.++|.+|.+.+-.++.+..++ ......+.|. |+|+|+
T Consensus 6 ~m~v~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~----~~~lWr 45 (91)
T PF02426_consen 6 RMTVNVPPDMPPEEVDRLKAREKARAQELQRQGK----WRHLWR 45 (91)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHCCe----eeEEEE
Confidence 357788888665554443333 2222333343 888887
No 143
>PRK06437 hypothetical protein; Provisional
Probab=38.30 E-value=93 Score=20.04 Aligned_cols=47 Identities=13% Similarity=0.190 Sum_probs=28.6
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 55 GSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 55 g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
++.-.++++..+||.||=+.+ ...+ +.+.+..+|+.+ . .++-+++||
T Consensus 10 ~~~~~~~i~~~~tv~dLL~~L----gi~~-------------~~vaV~vNg~iv-~-----~~~~L~dgD 56 (67)
T PRK06437 10 HINKTIEIDHELTVNDIIKDL----GLDE-------------EEYVVIVNGSPV-L-----EDHNVKKED 56 (67)
T ss_pred CcceEEEcCCCCcHHHHHHHc----CCCC-------------ccEEEEECCEEC-C-----CceEcCCCC
Confidence 344567788899999986554 2222 344566777444 3 344566766
No 144
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=36.98 E-value=97 Score=21.53 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=27.3
Q ss_pred EEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCC
Q 048546 50 VRKLDGSCFDIEVMKTATIAELRQAVEAAFSHM 82 (125)
Q Consensus 50 V~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~ 82 (125)
++...|....+.+.++..+.+|+++|.+++...
T Consensus 5 ~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d 37 (86)
T cd06409 5 FKDPKGRVHRFRLRPSESLEELRTLISQRLGDD 37 (86)
T ss_pred eeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCc
Confidence 445678888888888999999999999998633
No 145
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=35.63 E-value=92 Score=25.32 Aligned_cols=34 Identities=12% Similarity=0.419 Sum_probs=25.3
Q ss_pred eEEEEEccCC-------cEEEEE-eCCCCcHHHHHHHHHHHh
Q 048546 46 LKLSVRKLDG-------SCFDIE-VMKTATIAELRQAVEAAF 79 (125)
Q Consensus 46 MkltV~k~~g-------~~~~V~-V~~~ATV~dLK~aI~~~~ 79 (125)
|++.|.+.++ +.|.|+ +.++.||.|+=..|.+..
T Consensus 3 ~~~~i~R~~~~~~~~~~q~y~v~~~~~~~tvLd~L~~Ik~~~ 44 (250)
T PRK07570 3 LTLKIWRQKGPDDKGKFETYEVDDISPDMSFLEMLDVLNEQL 44 (250)
T ss_pred EEEEEEecCCCCCCceeEEEEecCCCCCCcHHHHHHHHHHHh
Confidence 5677776652 337787 678999999999997654
No 146
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=35.08 E-value=41 Score=23.30 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=16.1
Q ss_pred EEeCCCCcHHHHHHHHHHHhc
Q 048546 60 IEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 60 V~V~~~ATV~dLK~aI~~~~~ 80 (125)
+++...+||.||=+.+.+.+.
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~ 43 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLL 43 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCc
Confidence 334457999999999988763
No 147
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=34.51 E-value=77 Score=26.02 Aligned_cols=37 Identities=16% Similarity=0.394 Sum_probs=29.3
Q ss_pred CCCCeEEEEEccCC------cEEEEEeCCCCcHHHHHHHHHHH
Q 048546 42 PEQPLKLSVRKLDG------SCFDIEVMKTATIAELRQAVEAA 78 (125)
Q Consensus 42 ~~~aMkltV~k~~g------~~~~V~V~~~ATV~dLK~aI~~~ 78 (125)
|+..|+|.|.+.+. +.+.|++++..||.|+=..|...
T Consensus 5 ~~~~~~~~i~R~~~~~~~~~~~~~v~~~~~~tvLd~L~~i~~~ 47 (279)
T PRK12576 5 PEKEVIFKVKRYDPEKGSWWQEYKVKVDRFTQVTEALRRIKEE 47 (279)
T ss_pred CCcEEEEEEEecCCCCCCeEEEEEEecCCCCHHHHHHHHhCCc
Confidence 45678899988775 33789999999999988887654
No 148
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=33.71 E-value=1.6e+02 Score=20.14 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=32.5
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
.|+|+| +|+.+.+ +.+.||.||=+.+ ...+ +...+-.+|+-+ ..+.-.++-+++||
T Consensus 18 ~m~I~V---NG~~~~~--~~~~tl~~LL~~l----~~~~-------------~~vAVevNg~iV--pr~~w~~t~L~egD 73 (84)
T PRK06083 18 LITISI---NDQSIQV--DISSSLAQIIAQL----SLPE-------------LGCVFAINNQVV--PRSEWQSTVLSSGD 73 (84)
T ss_pred eEEEEE---CCeEEEc--CCCCcHHHHHHHc----CCCC-------------ceEEEEECCEEe--CHHHcCcccCCCCC
Confidence 356665 8887555 7788999886643 2222 233455666443 33445555566666
No 149
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=33.68 E-value=29 Score=23.77 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=24.6
Q ss_pred CCcHHHHHHHHHH-HhcC-CCCCCCCcccccccccceEEeecCee---eccCcchhhhcCCcCCC
Q 048546 65 TATIAELRQAVEA-AFSH-MPKTGPGKISWPHVWGHFCLCYNGQK---LICENDNIKYYGIRDGD 124 (125)
Q Consensus 65 ~ATV~dLK~aI~~-~~~~-~~~~g~~~IsW~~VW~q~~L~~~g~K---Ll~D~~tL~dyGIkdGd 124 (125)
.+|+.+|-+.|-+ ++.. .|. |+. .--++|+..- =....++|+++||++|.
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~-----v~~-----~~~ilyd~de~~~~~~l~k~L~elgi~~gs 62 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPD-----VSV-----GGTILYDSDEEEYDDNLPKKLSELGIVNGS 62 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEE-----EEE-----S-EEEE-SSSSSSTTCTTSBGGGGT--TT-
T ss_pred hCcHHHHHHHHHHhccCCCCCE-----EEe-----CCCEEEcCCcchhhhcccCChhHcCCCCCC
Confidence 5999999887655 3321 121 111 1224444322 23456899999999996
No 150
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.33 E-value=1.9e+02 Score=20.96 Aligned_cols=51 Identities=20% Similarity=0.291 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHHHHHhcCCCC-----CCCCcccccccccceEEeecCeeeccCcchhh--hcCCcCCCC
Q 048546 64 KTATIAELRQAVEAAFSHMPK-----TGPGKISWPHVWGHFCLCYNGQKLICENDNIK--YYGIRDGDQ 125 (125)
Q Consensus 64 ~~ATV~dLK~aI~~~~~~~~~-----~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~--dyGIkdGd~ 125 (125)
..+||.+|=.-|..++-..|. .|. -+ -...||+.+- |-+-|. +|.+++||.
T Consensus 34 ~~~tvgdll~yi~~~~ie~r~~lFi~~gs----vr--pGii~lINd~-----DWEllekedy~ledgD~ 91 (101)
T KOG4146|consen 34 SPATVGDLLDYIFGKYIETRDSLFIHHGS----VR--PGIIVLINDM-----DWELLEKEDYPLEDGDH 91 (101)
T ss_pred CcccHHHHHHHHHHHHhcCCcceEeeCCc----Cc--CcEEEEEecc-----chhhhcccccCcccCCE
Confidence 359999998888875422221 111 11 1567777664 333343 788888883
No 151
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=32.75 E-value=1.1e+02 Score=22.12 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=24.5
Q ss_pred EEEEEccCC---------cEEEEEeCCCCcHHHHHHHHHHHh
Q 048546 47 KLSVRKLDG---------SCFDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 47 kltV~k~~g---------~~~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
++.|.+.+. +.|.|.+++..||.|+=..|++..
T Consensus 1 t~~I~R~~~~~~~~~~~~~~y~v~~~~~~tVLd~L~~Ik~~~ 42 (110)
T PF13085_consen 1 TLRIFRFDPESDEGEPYYQEYEVPVEPGMTVLDALNYIKEEQ 42 (110)
T ss_dssp EEEEEE--TTSTTSS-EEEEEEEEGGSTSBHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCCCCCeEEEEEecCCCCCcHHHHHHHHHhcc
Confidence 455666555 237899999999999999999974
No 152
>PRK12765 flagellar capping protein; Provisional
Probab=31.51 E-value=94 Score=28.41 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=27.9
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHH
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAA 78 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~ 78 (125)
..+.+++ ..+|+.+.|.|+.+.|+.||..+|-..
T Consensus 131 gt~tlti-~~~g~~~tI~i~~~~TL~dl~~aIN~a 164 (595)
T PRK12765 131 GETDLTI-FSNGKEYTITVDKSTTYRDLADKINEA 164 (595)
T ss_pred CceEEEE-EeCCEEEEEEECCCCCHHHHHHHHhcC
Confidence 4556666 557888999999999999999999764
No 153
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=31.45 E-value=57 Score=28.41 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=45.9
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecC--eeecc--CcchhhhcCCc
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNG--QKLIC--ENDNIKYYGIR 121 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g--~KLl~--D~~tL~dyGIk 121 (125)
=.|.||-.||+.+-+....+.+|.-|=..++.+.+-+.+ +.|.|+.+= .|+++ .+.||.++||.
T Consensus 278 t~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k------------~~FkLv~a~P~~k~l~~~~daT~~eaGL~ 345 (356)
T KOG1364|consen 278 TSIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDK------------KRFKLVQAIPASKTLDYGADATFKEAGLA 345 (356)
T ss_pred eEEEEecCCccHHHHhhccccHHHHHHHHHHHhhccccc------------ccceeeecccchhhhhccccchHHHhccC
Confidence 348899999998766666677888777777776553333 455666654 45543 35899999998
Q ss_pred CC
Q 048546 122 DG 123 (125)
Q Consensus 122 dG 123 (125)
|.
T Consensus 346 nS 347 (356)
T KOG1364|consen 346 NS 347 (356)
T ss_pred cc
Confidence 85
No 154
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=30.85 E-value=1.1e+02 Score=24.60 Aligned_cols=35 Identities=11% Similarity=0.278 Sum_probs=27.9
Q ss_pred CeEEEEEccCC--------cEEEEEeCCCCcHHHHHHHHHHHh
Q 048546 45 PLKLSVRKLDG--------SCFDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 45 aMkltV~k~~g--------~~~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
.|+|.|.+.+. +.+.|+++++.||.|+=..|....
T Consensus 6 ~v~~~i~R~~~~~~~~~~~~~~~v~~~~~~tvl~~L~~ik~~~ 48 (244)
T PRK12385 6 NLKIEVLRYNPEVDTEPHSQTYEVPYDETTSLLDALGYIKDNL 48 (244)
T ss_pred EEEEEEEeeCCCCCCCceeEEEEeeCCCCCcHHHHHHHHHHhc
Confidence 47899988764 236888889999999999998754
No 155
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=29.56 E-value=58 Score=21.54 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=17.0
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHH
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAV 75 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI 75 (125)
|++.+ +|+. ++++...||+||=+.+
T Consensus 3 m~i~~---ng~~--~e~~~~~tv~dLL~~l 27 (68)
T COG2104 3 MTIQL---NGKE--VEIAEGTTVADLLAQL 27 (68)
T ss_pred EEEEE---CCEE--EEcCCCCcHHHHHHHh
Confidence 44444 5776 6667778999986654
No 156
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=29.50 E-value=90 Score=21.11 Aligned_cols=22 Identities=9% Similarity=0.163 Sum_probs=16.0
Q ss_pred EEEeCC-CCcHHHHHHHHHHHhc
Q 048546 59 DIEVMK-TATIAELRQAVEAAFS 80 (125)
Q Consensus 59 ~V~V~~-~ATV~dLK~aI~~~~~ 80 (125)
.|.++. ..+|.|||++|..+-+
T Consensus 13 ~i~fdG~~Isv~dLKr~I~~~~~ 35 (74)
T PF08783_consen 13 TITFDGTSISVFDLKREIIEKKK 35 (74)
T ss_dssp EEEESSSEEEHHHHHHHHHHHHT
T ss_pred EEEECCCeeEHHHHHHHHHHHhC
Confidence 455544 3799999999977643
No 157
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=28.74 E-value=21 Score=23.49 Aligned_cols=14 Identities=36% Similarity=0.738 Sum_probs=12.0
Q ss_pred cchhhhcCCcCCCC
Q 048546 112 NDNIKYYGIRDGDQ 125 (125)
Q Consensus 112 ~~tL~dyGIkdGd~ 125 (125)
.+.|...|+++||+
T Consensus 46 ~~~L~~~G~~~GD~ 59 (69)
T TIGR03595 46 EDALRKAGAKDGDT 59 (69)
T ss_pred HHHHHHcCCCCCCE
Confidence 46899999999984
No 158
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=28.40 E-value=89 Score=26.84 Aligned_cols=55 Identities=18% Similarity=0.264 Sum_probs=32.4
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
|+|+| ||+. ++++.+.||.||=+.+ ...+ +...+..+|+-+ ..+.-.++-++|||
T Consensus 1 M~I~V---NGk~--~el~e~~TL~dLL~~L----~i~~-------------~~VAVeVNgeIV--pr~~w~~t~LkeGD 55 (326)
T PRK11840 1 MRIRL---NGEP--RQVPAGLTIAALLAEL----GLAP-------------KKVAVERNLEIV--PRSEYGQVALEEGD 55 (326)
T ss_pred CEEEE---CCEE--EecCCCCcHHHHHHHc----CCCC-------------CeEEEEECCEEC--CHHHcCccccCCCC
Confidence 55555 7886 4457888999887653 2222 345566777444 23334455566666
No 159
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=28.37 E-value=1.1e+02 Score=19.17 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=23.0
Q ss_pred EEEccCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 048546 49 SVRKLDGSCFDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 49 tV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
+|..-||+..+ ++..+|+.|+=+.|...+
T Consensus 2 ~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l 30 (60)
T PF02824_consen 2 RVYLPDGSIKE--LPEGSTVLDVAYSIHSSL 30 (60)
T ss_dssp EEEETTSCEEE--EETTBBHHHHHHHHSHHH
T ss_pred EEECCCCCeee--CCCCCCHHHHHHHHCHHH
Confidence 44457788755 689999999999999865
No 160
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=27.62 E-value=1.5e+02 Score=20.24 Aligned_cols=61 Identities=16% Similarity=0.313 Sum_probs=32.8
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 54 DGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 54 ~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
+|+..+|+-..+|-.--. +++........++..=+|.. ---+| .+++-++++.|||+.+|-
T Consensus 4 NGqPv~VEANvnaPLh~v---~akALe~sgNvgQP~ENWEl------kDe~G-~vlD~~kKveD~Gftngv 64 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPV---RAKALEQSGNVGQPPENWEL------KDESG-QVLDVNKKVEDFGFTNGV 64 (76)
T ss_pred CCCceeeecCCCCcchHH---HHHHHhhccccCCCccccee------eccCC-cEeeccchhhhccccccc
Confidence 677777776666654433 33333211111221123411 12346 556888999999999873
No 161
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=26.86 E-value=1.3e+02 Score=20.17 Aligned_cols=33 Identities=6% Similarity=0.238 Sum_probs=23.7
Q ss_pred eEEEEEccCCcE----EEEEeCCCCcHHHHHHHHHHHh
Q 048546 46 LKLSVRKLDGSC----FDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 46 MkltV~k~~g~~----~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
|+|.-++ .|.. -++.++..|||.|+=.+|...+
T Consensus 2 irvytk~-~g~~~d~~~~liL~~GaTV~D~a~~iH~di 38 (75)
T cd01666 2 IRVYTKP-KGQEPDFDEPVILRRGSTVEDVCNKIHKDL 38 (75)
T ss_pred EEEEeCC-CCCCCCCCCCEEECCCCCHHHHHHHHHHHH
Confidence 4555533 3432 3688899999999999999744
No 162
>PRK01777 hypothetical protein; Validated
Probab=26.86 E-value=1.1e+02 Score=21.43 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=20.3
Q ss_pred CeEEEEEc-cCCcE--EEEEeCCCCcHHHHHHHH
Q 048546 45 PLKLSVRK-LDGSC--FDIEVMKTATIAELRQAV 75 (125)
Q Consensus 45 aMkltV~k-~~g~~--~~V~V~~~ATV~dLK~aI 75 (125)
.|+|+|.- .+... ..++|+..+||.|+=++.
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s 36 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS 36 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc
Confidence 46666654 23333 578899999999865543
No 163
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=26.31 E-value=1.1e+02 Score=23.32 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=24.0
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 54 DGSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 54 ~g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
+...+.+.|+..|+=.|.|+||++.|.
T Consensus 81 ~~N~yvF~Vd~kAnK~qIK~AVEklf~ 107 (145)
T PTZ00191 81 DNNTLVFIVDQRANKTQIKKAVEKLYD 107 (145)
T ss_pred hCCEEEEEEcCCCCHHHHHHHHHHHhC
Confidence 346788999999999999999999986
No 164
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=25.71 E-value=24 Score=23.21 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=8.8
Q ss_pred cchhhhcCCcCCCC
Q 048546 112 NDNIKYYGIRDGDQ 125 (125)
Q Consensus 112 ~~tL~dyGIkdGd~ 125 (125)
.+.|...|+++||.
T Consensus 46 ~~~L~~~G~~~GD~ 59 (69)
T PF09269_consen 46 EKALRKAGAKEGDT 59 (69)
T ss_dssp HHHHHTTT--TT-E
T ss_pred HHHHHHcCCCCCCE
Confidence 46889999999984
No 165
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=25.55 E-value=1.1e+02 Score=23.57 Aligned_cols=30 Identities=13% Similarity=0.392 Sum_probs=24.0
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHH
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQA 74 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~a 74 (125)
..+.|++ +.||+.+.|+++++.+..|+=+.
T Consensus 5 ~~~~i~~-~vNG~~~~~~~~~~~~Ll~~LR~ 34 (159)
T PRK09908 5 ETITIEC-TINGMPFQLHAAPGTPLSELLRE 34 (159)
T ss_pred CceeEEE-EECCEEEEEecCCCCcHHHHHHH
Confidence 4556666 78999999999999999887664
No 166
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=25.29 E-value=1.1e+02 Score=24.93 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=27.3
Q ss_pred CeEEEEEccCC-----cEEEEEeCCCCcHHHHHHHHHHH
Q 048546 45 PLKLSVRKLDG-----SCFDIEVMKTATIAELRQAVEAA 78 (125)
Q Consensus 45 aMkltV~k~~g-----~~~~V~V~~~ATV~dLK~aI~~~ 78 (125)
.|++.|.+.++ +.|.|+++++.||.|+=..|...
T Consensus 4 ~~~~~I~R~~~~~~~~q~y~v~~~~~~tvLd~L~~i~~~ 42 (251)
T PRK12386 4 TAKFRVWRGDASGGELQDYTVEVNEGEVVLDVIHRLQAT 42 (251)
T ss_pred EEEEEEEcCCCCCCceEEEEEeCCCCCCHHHHHHHhccc
Confidence 48888888775 44788899999999988887763
No 167
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=25.22 E-value=86 Score=21.77 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=10.8
Q ss_pred EEEEeCCCCcHHHH
Q 048546 58 FDIEVMKTATIAEL 71 (125)
Q Consensus 58 ~~V~V~~~ATV~dL 71 (125)
+.++|+..+||.|-
T Consensus 16 ~~l~vp~GtTv~~A 29 (84)
T PF03658_consen 16 LTLEVPEGTTVAQA 29 (84)
T ss_dssp EEEEEETT-BHHHH
T ss_pred EEEECCCcCcHHHH
Confidence 58889999999873
No 168
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=24.87 E-value=55 Score=19.20 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=11.7
Q ss_pred CCCCcHHHHHHHHHHH
Q 048546 63 MKTATIAELRQAVEAA 78 (125)
Q Consensus 63 ~~~ATV~dLK~aI~~~ 78 (125)
+.+.||.|||..+.++
T Consensus 1 p~sltV~~Lk~iL~~~ 16 (35)
T PF12949_consen 1 PKSLTVAQLKRILDEH 16 (35)
T ss_dssp STT--SHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHc
Confidence 3568999999999886
No 169
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=24.43 E-value=1.6e+02 Score=24.50 Aligned_cols=46 Identities=7% Similarity=0.193 Sum_probs=34.9
Q ss_pred eeeeecCCCCCCCeEEEEEccCCc--------EEEEEeCC-CCcHHHHHHHHHHH
Q 048546 33 RKNFSYNKLPEQPLKLSVRKLDGS--------CFDIEVMK-TATIAELRQAVEAA 78 (125)
Q Consensus 33 ~~~~~~~~~~~~aMkltV~k~~g~--------~~~V~V~~-~ATV~dLK~aI~~~ 78 (125)
..+-+-|-.|.+.|++.|.+.+.. .|.|++.+ ..||.|+=..|++.
T Consensus 31 ~~~~~~~~~~~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tVLd~L~~Ik~~ 85 (276)
T PLN00129 31 TKASSKGSKPSNLKEFQIYRWNPDNPGKPHLQSYKVDLNDCGPMVLDVLIKIKNE 85 (276)
T ss_pred ccccCCCCCCCceEEEEEEeeCCCCCCCceeEEEEeCCCCCCchHHHHHHHHHHc
Confidence 556677877778899999887632 25676654 69999999999875
No 170
>PF09118 DUF1929: Domain of unknown function (DUF1929); InterPro: IPR015202 This domain adopts a secondary structure consisting of a bundle of seven, mostly antiparallel, beta-strands surrounding a hydrophobic core. The 7 strands are arranged in 2 sheets, in a Greek-key topology. Their precise function, has not, as yet, been defined, though they are mostly found in sugar-utilising enzymes, such as galactose oxidase []. ; PDB: 2JKX_A 2EIC_A 1K3I_A 1GOH_A 2EIB_A 2WQ8_A 2VZ1_A 1GOF_A 2VZ3_A 1GOG_A ....
Probab=24.05 E-value=88 Score=21.79 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=26.8
Q ss_pred cceeeccccceeeeecCCCCCC-CeEEEEEccCCcEEEEEeCCCCcH
Q 048546 23 ALSLMIGGFSRKNFSYNKLPEQ-PLKLSVRKLDGSCFDIEVMKTATI 68 (125)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~-aMkltV~k~~g~~~~V~V~~~ATV 68 (125)
...++.+.++.=+++.| | .+.|.+...++..+.|..|.++.|
T Consensus 31 ~v~L~~~~~~THs~~~~----QR~v~L~~~~~~~~~~~v~~P~~~~v 73 (98)
T PF09118_consen 31 KVSLVRPGFVTHSFNMG----QRMVELEFVSGGGNTVTVTAPPNPNV 73 (98)
T ss_dssp EEEEEE--EEETTB-SS-----EEEEE-EEEESSSEEEEE--S-TTT
T ss_pred EEEEEeCCcccccccCC----CCEEeeeeecCCCCEEEEECCCCCcc
Confidence 45666677888888888 6 578999888899999999987754
No 171
>PF05868 Rotavirus_VP7: Rotavirus major outer capsid protein VP7; InterPro: IPR008818 This family consists of several Rotavirus major outer capsid protein VP7 sequences. The rotavirus capsid is composed of three concentric protein layers. Proteins VP4 and VP7 comprise the outer layer. VP4 forms spikes and is the viral attachment protein. VP7 is a glycoprotein and the major constituent of the outer protein layer [].; GO: 0016021 integral to membrane, 0019012 virion
Probab=23.44 E-value=20 Score=29.73 Aligned_cols=13 Identities=38% Similarity=0.940 Sum_probs=11.1
Q ss_pred CcccccccccceE
Q 048546 88 GKISWPHVWGHFC 100 (125)
Q Consensus 88 ~~IsW~~VW~q~~ 100 (125)
++|||..||..+.
T Consensus 213 ~~i~WgnVWt~vk 225 (249)
T PF05868_consen 213 QRISWGNVWTNVK 225 (249)
T ss_pred eccchhhhHHHHH
Confidence 8999999998653
No 172
>PF10290 DUF2403: Glycine-rich protein domain (DUF2403); InterPro: IPR018807 This domain is found N-terminal to IPR018805 from INTERPRO. The function of this glycine-rich domain is unknown.
Probab=22.67 E-value=83 Score=20.97 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=26.2
Q ss_pred cccccCCCCCCCCCCccccceeeccccceeeeecCCCCCCCeEEE
Q 048546 5 AMEEFSPRISVDSPRHSGALSLMIGGFSRKNFSYNKLPEQPLKLS 49 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aMklt 49 (125)
+|.+-.-+-+...--|+++++++++ .++++|. +.|+|.
T Consensus 20 ~md~~~~~C~~~~~~fsG~laPl~E---elSvhFR----GPl~L~ 57 (65)
T PF10290_consen 20 SMDDSSCSCSKEPVSFSGPLAPLNE---ELSVHFR----GPLNLK 57 (65)
T ss_pred EecCCCccccCCcEEeeCCCCCCCC---cEEEEEe----CCcEEE
Confidence 4433333344555567888888777 7999999 888875
No 173
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=22.65 E-value=1.4e+02 Score=20.18 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=16.4
Q ss_pred EEEEEccCCcEEEEEeCCCCcHHHHH
Q 048546 47 KLSVRKLDGSCFDIEVMKTATIAELR 72 (125)
Q Consensus 47 kltV~k~~g~~~~V~V~~~ATV~dLK 72 (125)
+|.+++.||..+.|.+. ..+.+|+.
T Consensus 35 kV~L~k~nG~~i~VP~~-kLS~~D~~ 59 (70)
T PF03983_consen 35 KVHLHKTNGVKIAVPLE-KLSDEDQE 59 (70)
T ss_dssp EEEEE-TTS-EEEEETT-SB-HHHHH
T ss_pred EEEEEecCCeEEEeEhH-HcCHHHHH
Confidence 88899999999777554 36677764
No 174
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=22.61 E-value=85 Score=27.27 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=27.3
Q ss_pred CeEEEEEccCCcEEEEE--eCCCCcHHHHHHHHHHHh
Q 048546 45 PLKLSVRKLDGSCFDIE--VMKTATIAELRQAVEAAF 79 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~--V~~~ATV~dLK~aI~~~~ 79 (125)
.|-+.|-..+++-.+++ +.+.+|++|+.+++.+.-
T Consensus 246 G~a~RVPt~nvS~vDLt~~l~k~~t~eein~a~k~aa 282 (361)
T PTZ00434 246 GMSFRVPTPDVSVVDLTFRATRDTSIQEIDAAIKRAS 282 (361)
T ss_pred eEEEecccCcEeEEEEEEEeCCCCCHHHHHHHHHHhh
Confidence 36667777888876555 688899999999998864
No 175
>PF13157 DUF3992: Protein of unknown function (DUF3992)
Probab=22.16 E-value=1.7e+02 Score=20.67 Aligned_cols=42 Identities=10% Similarity=0.152 Sum_probs=30.9
Q ss_pred ccceeeeecCCCCCCCeEEEEEccCCcEE-EEEeCCC----CcHHHHH
Q 048546 30 GFSRKNFSYNKLPEQPLKLSVRKLDGSCF-DIEVMKT----ATIAELR 72 (125)
Q Consensus 30 ~~~~~~~~~~~~~~~aMkltV~k~~g~~~-~V~V~~~----ATV~dLK 72 (125)
+.+.+.+.|...+..+|+|++. .+|.-. .+.|.+. .|+.+|.
T Consensus 26 i~gTi~V~n~~~~~~~itV~i~-~~g~~v~tftV~pG~S~S~T~~~~~ 72 (92)
T PF13157_consen 26 ISGTIYVYNDTGSGNPITVTIL-QNGTAVNTFTVQPGNSRSFTVRDFQ 72 (92)
T ss_pred EEEEEEEEECCCCCCCEEEEEE-ECCcEEeEEEECCCceEEEEeccce
Confidence 5678999999999999999987 555553 4555443 6777664
No 176
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=21.87 E-value=1.8e+02 Score=20.83 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=19.3
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
|++++.+.++....++|.- +-.++++++++.+
T Consensus 1 M~v~~~~~~~~~~~~~v~v--~~~~~~~~~~~~l 32 (145)
T PF05697_consen 1 MKVTVEKIEDSKVKLEVEV--PAEEVEKAYEKAL 32 (145)
T ss_dssp -EEEEEEESTTEEEEEEEE---HHHHHHHHHHHH
T ss_pred CccEEEECCCcEEEEEEEE--CHHHHHHHHHHHH
Confidence 8999999999885444432 3355555555543
No 177
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=21.18 E-value=2e+02 Score=22.50 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=29.7
Q ss_pred eecCCCCCCCeEEEEEccCCcEEEEEeCCCCcHHHH
Q 048546 36 FSYNKLPEQPLKLSVRKLDGSCFDIEVMKTATIAEL 71 (125)
Q Consensus 36 ~~~~~~~~~aMkltV~k~~g~~~~V~V~~~ATV~dL 71 (125)
.+-+.-+.+-++|+....||....+.+....||.|+
T Consensus 34 ~~~~~~~~e~i~Itfv~~dG~~~~i~g~vGdtlLd~ 69 (159)
T KOG3309|consen 34 PSKGPRKVEDIKITFVDPDGEEIKIKGKVGDTLLDA 69 (159)
T ss_pred cccCCCCCceEEEEEECCCCCEEEeeeecchHHHHH
Confidence 345555555699999999999999999888899886
No 178
>cd02851 Galactose_oxidase_C_term Galactose oxidase C-terminus domain. Galactose oxidase is an extracellular monomeric enzyme which catalyses the stereospecific oxidation of a broad range of primary alcohol substrates and possesses a unique mononuclear copper site essential for catalysing a two-electron transfer reaction during the oxidation of primary alcohols to corresponding aldehydes. The second redox active center necessary for the reaction was found to be situated at a tyrosine residue. The C-terminus of galactose oxidase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=20.47 E-value=1.6e+02 Score=20.87 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=28.1
Q ss_pred ceeeccccceeeeecCCCCCC-CeEEEEEccCCcEEEEEeCCCCcH
Q 048546 24 LSLMIGGFSRKNFSYNKLPEQ-PLKLSVRKLDGSCFDIEVMKTATI 68 (125)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~-aMkltV~k~~g~~~~V~V~~~ATV 68 (125)
..|+.+.++.=+++.| | .+.|.+....+..+.|.+|.++.|
T Consensus 34 v~Lvr~~~~THs~~~~----QR~v~L~~~~~~~~~~~v~~P~n~~v 75 (101)
T cd02851 34 ASLVRYGSATHTVNTD----QRRIPLTLFSVGGNSYSVQIPSDPGV 75 (101)
T ss_pred EEEEecccccccccCC----ccEEEeeeEecCCCEEEEEcCCCCCc
Confidence 4444456666667777 5 467877666777888988887655
No 179
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=20.46 E-value=81 Score=21.78 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=21.7
Q ss_pred CCcHHHHHHHHHHHhcCCCCCCCCcccccccc
Q 048546 65 TATIAELRQAVEAAFSHMPKTGPGKISWPHVW 96 (125)
Q Consensus 65 ~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW 96 (125)
.|+..++++|++.......+.....|+|...+
T Consensus 6 ~A~~e~I~~AL~~~~~~~~~~~~~~it~~dL~ 37 (87)
T PF13331_consen 6 HASPEAIREALENARTEDEEPKESEITWEDLI 37 (87)
T ss_pred CCCHHHHHHHHHHhCccccCCccCcCCHHHHH
Confidence 79999999999998654433222247776533
No 180
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=20.23 E-value=2.7e+02 Score=18.38 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=26.0
Q ss_pred CCCeEEEEEccCCcEEEEEeCCC----CcHHHHHHHHHHHhc
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKT----ATIAELRQAVEAAFS 80 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~----ATV~dLK~aI~~~~~ 80 (125)
.+.++|+| ..+|.-.+|++++. ....+|...|-..++
T Consensus 29 ~g~V~V~v-~g~g~v~~i~i~~~~~~~~~~~~L~~~I~~A~n 69 (93)
T PF02575_consen 29 DGLVTVTV-NGNGEVVDIEIDPSALRPLDPEELEDLIVEAVN 69 (93)
T ss_dssp CCTEEEEE-ETTS-EEEEEE-GGGGCTS-HHHHHHHHHHHHH
T ss_pred CCEEEEEE-ecCceEEEEEEehHhhccCCHHHHHHHHHHHHH
Confidence 36899999 88899999999775 456777777766554
No 181
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=20.16 E-value=1e+02 Score=20.69 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=12.7
Q ss_pred CCcHHHHHHHHHHHhc
Q 048546 65 TATIAELRQAVEAAFS 80 (125)
Q Consensus 65 ~ATV~dLK~aI~~~~~ 80 (125)
-+||.+|.+.+.+.+.
T Consensus 27 ~~tv~~L~~~l~~~~~ 42 (84)
T COG1977 27 GATVGELEELLPKEGE 42 (84)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 5899999998877654
Done!