Query 048546
Match_columns 125
No_of_seqs 103 out of 194
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 18:17:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2y_A 3300001G02RIK protein; 99.9 5.5E-28 1.9E-32 172.1 6.2 83 43-125 5-89 (105)
2 3v6c_B Ubiquitin; structural g 99.5 3E-14 1E-18 95.9 9.1 70 42-125 14-83 (91)
3 3phx_B Ubiquitin-like protein 99.5 3.5E-14 1.2E-18 92.6 9.1 68 44-125 3-70 (79)
4 2dzi_A Ubiquitin-like protein 99.5 6.7E-14 2.3E-18 90.9 9.8 69 43-125 5-73 (81)
5 3dbh_I NEDD8; cell cycle, acti 99.5 5.3E-14 1.8E-18 92.8 8.7 69 43-125 10-78 (88)
6 2kk8_A Uncharacterized protein 99.5 8.5E-14 2.9E-18 93.7 9.4 70 43-125 8-77 (84)
7 1wh3_A 59 kDa 2'-5'-oligoadeny 99.5 7E-14 2.4E-18 92.5 8.8 70 41-124 3-72 (87)
8 1ndd_A NEDD8, protein (ubiquit 99.5 7.2E-14 2.5E-18 89.1 8.3 66 46-125 1-66 (76)
9 3a9j_A Ubiquitin; protein comp 99.5 8.5E-14 2.9E-18 88.8 8.2 66 46-125 1-66 (76)
10 4fbj_B NEDD8; effector-HOST ta 99.5 7.4E-14 2.5E-18 93.9 8.1 66 46-125 1-66 (88)
11 3mtn_B UBA80, ubcep1, ubiquiti 99.5 1E-13 3.6E-18 90.5 8.6 68 44-125 2-69 (85)
12 2wyq_A HHR23A, UV excision rep 99.5 2.1E-13 7.1E-18 89.6 9.5 69 44-125 4-74 (85)
13 3n3k_B Ubiquitin; hydrolase, p 99.5 7E-14 2.4E-18 91.5 7.1 68 44-125 2-69 (85)
14 4hcn_B Polyubiquitin, ubiquiti 99.5 1.1E-13 3.7E-18 94.7 7.8 67 44-124 21-87 (98)
15 1uel_A HHR23B, UV excision rep 99.5 2.1E-13 7.2E-18 92.8 9.0 67 46-125 1-69 (95)
16 2bwf_A Ubiquitin-like protein 99.5 2.1E-13 7.3E-18 87.7 8.6 65 46-125 5-69 (77)
17 1sif_A Ubiquitin; hydrophobic 99.5 1.2E-13 4.2E-18 92.8 7.8 68 44-125 8-75 (88)
18 1uh6_A Ubiquitin-like 5; beta- 99.5 7.4E-14 2.5E-18 98.6 6.9 67 45-125 28-94 (100)
19 4dwf_A HLA-B-associated transc 99.5 1.9E-13 6.6E-18 91.2 8.6 67 43-124 3-69 (90)
20 3k9o_B Ubiquitin, UBB+1; E2-25 99.5 1.7E-13 5.8E-18 92.3 8.2 67 45-125 1-67 (96)
21 2faz_A Ubiquitin-like containi 99.5 2.4E-13 8.2E-18 88.2 8.2 67 45-125 2-70 (78)
22 4eew_A Large proline-rich prot 99.5 2.4E-13 8.2E-18 90.4 8.3 66 44-124 16-81 (88)
23 1yx5_B Ubiquitin; proteasome, 99.4 3.7E-13 1.3E-17 91.6 8.1 66 46-125 1-66 (98)
24 3m62_B UV excision repair prot 99.4 2E-13 6.8E-18 95.2 6.6 66 46-125 2-67 (106)
25 3plu_A Ubiquitin-like modifier 99.4 5E-13 1.7E-17 93.6 8.3 68 44-125 20-87 (93)
26 2hj8_A Interferon-induced 17 k 99.4 2.8E-13 9.7E-18 90.9 6.8 68 44-125 3-70 (88)
27 2uyz_B Small ubiquitin-related 99.4 4E-13 1.4E-17 87.5 7.2 67 45-125 3-69 (79)
28 1wy8_A NP95-like ring finger p 99.4 1.1E-12 3.7E-17 87.2 9.4 69 43-125 5-75 (89)
29 4a20_A Ubiquitin-like protein 99.4 6.2E-13 2.1E-17 92.7 8.0 71 40-124 14-88 (98)
30 1wgh_A Ubiquitin-like 3, HCG-1 99.4 1.2E-12 4.2E-17 94.2 9.6 79 39-124 10-89 (116)
31 2l7r_A Ubiquitin-like protein 99.4 5.7E-13 2E-17 90.7 7.2 71 39-125 13-83 (93)
32 1ttn_A DC-UBP, dendritic cell- 99.4 9.3E-13 3.2E-17 91.5 8.3 68 44-125 22-89 (106)
33 1wyw_B Ubiquitin-like protein 99.4 9.8E-13 3.3E-17 90.1 7.9 69 43-125 19-87 (97)
34 3vdz_A Ubiquitin-40S ribosomal 99.4 1.6E-12 5.4E-17 91.3 9.0 68 44-125 34-101 (111)
35 1yqb_A Ubiquilin 3; structural 99.4 1.4E-12 4.8E-17 90.2 8.7 71 40-125 17-87 (100)
36 2daf_A FLJ35834 protein; hypot 99.4 1E-12 3.4E-17 95.6 8.1 67 44-124 14-81 (118)
37 1wx8_A Riken cDNA 4931431F19; 99.4 6.2E-13 2.1E-17 90.0 6.6 67 43-124 15-81 (96)
38 1wju_A NEDD8 ultimate buster-1 99.4 7.6E-13 2.6E-17 93.4 7.0 64 47-124 17-84 (100)
39 2klc_A Ubiquilin-1; ubiquitin- 99.4 2.4E-12 8.3E-17 89.0 9.3 67 44-125 24-90 (101)
40 2ojr_A Ubiquitin; lanthide-bin 99.4 3E-12 1E-16 89.6 9.4 68 44-125 34-101 (111)
41 3b1l_X E3 ubiquitin-protein li 99.1 4.8E-14 1.6E-18 91.0 0.0 66 46-125 1-66 (76)
42 1wia_A Hypothetical ubiquitin- 99.4 1.4E-12 4.9E-17 88.2 7.3 65 43-124 5-70 (95)
43 1wgd_A Homocysteine-responsive 99.4 1.9E-12 6.6E-17 87.4 7.8 70 42-124 4-78 (93)
44 3rt3_B Ubiquitin-like protein 99.4 3E-12 1E-16 93.1 9.4 69 43-125 79-147 (159)
45 2lxa_A Ubiquitin-like protein 99.4 7.3E-13 2.5E-17 90.5 5.6 65 46-124 2-70 (87)
46 2gow_A HCG-1 protein, ubiquiti 99.3 2.5E-12 8.5E-17 93.5 7.8 74 44-124 16-90 (125)
47 1wx7_A Ubiquilin 3; ubiquitin- 99.3 3.3E-12 1.1E-16 88.4 7.9 66 44-124 16-81 (106)
48 1v5o_A 1700011N24RIK protein; 99.3 4E-12 1.4E-16 87.7 8.3 68 44-124 6-77 (102)
49 2kan_A Uncharacterized protein 99.3 5.1E-12 1.7E-16 86.5 8.6 66 44-124 14-80 (94)
50 1j8c_A Ubiquitin-like protein 99.3 8E-12 2.7E-16 89.9 9.4 66 44-124 31-96 (125)
51 3b08_A Polyubiquitin-C, ubiqui 99.3 6.3E-12 2.2E-16 89.5 8.2 66 46-125 1-66 (152)
52 3u30_A Ubiquitin, linear DI-ub 99.3 9E-12 3.1E-16 92.1 8.9 70 42-125 17-86 (172)
53 3l0w_B Monoubiquitinated proli 99.3 9.6E-12 3.3E-16 93.4 9.0 66 46-125 1-66 (169)
54 2kdb_A Homocysteine-responsive 99.3 8.1E-12 2.8E-16 87.1 7.5 69 43-124 21-94 (99)
55 1v5t_A 8430435I17RIK protein; 99.3 5.6E-12 1.9E-16 85.2 6.5 66 44-124 6-75 (90)
56 2kdi_A Ubiquitin, vacuolar pro 99.3 1.5E-11 5.3E-16 86.8 9.0 68 43-124 7-74 (114)
57 3b08_A Polyubiquitin-C, ubiqui 99.3 2.2E-11 7.4E-16 86.6 9.6 69 43-125 74-142 (152)
58 1wxv_A BAG-family molecular ch 99.3 1.9E-11 6.5E-16 82.2 8.7 67 44-124 6-77 (92)
59 3m63_B Ubiquitin domain-contai 99.3 2.2E-12 7.4E-17 89.5 4.0 66 44-124 27-92 (101)
60 1x1m_A Ubiquitin-like protein 99.3 1.1E-11 3.7E-16 86.3 7.5 69 42-124 9-92 (107)
61 1we6_A Splicing factor, putati 99.3 1.2E-11 4E-16 86.4 7.6 68 44-125 26-97 (111)
62 2dzj_A Synaptic glycoprotein S 99.3 4.7E-12 1.6E-16 86.2 5.5 67 45-124 10-81 (88)
63 3rt3_B Ubiquitin-like protein 99.3 1.4E-11 4.9E-16 89.5 8.3 66 45-124 2-69 (159)
64 2kd0_A LRR repeats and ubiquit 99.3 2.1E-11 7E-16 81.8 8.3 65 45-124 12-76 (85)
65 1wgg_A Ubiquitin carboxyl-term 99.2 1.3E-11 4.4E-16 84.9 6.8 65 44-124 6-71 (96)
66 1v86_A DNA segment, CHR 7, way 99.2 1.5E-11 5E-16 84.2 6.7 66 43-124 15-80 (95)
67 3u5e_m 60S ribosomal protein L 99.2 7.7E-13 2.6E-17 94.8 0.0 66 46-125 1-66 (128)
68 1se9_A Ubiquitin family; ubiqu 99.2 8.6E-11 2.9E-15 85.9 10.4 74 44-124 15-89 (126)
69 4dbg_A Ranbp-type and C3HC4-ty 99.2 3.8E-11 1.3E-15 85.4 8.1 73 39-125 16-93 (105)
70 3q3f_A Ribonuclease/ubiquitin 99.2 3.4E-11 1.2E-15 92.8 8.2 74 38-125 98-171 (189)
71 1wf9_A NPL4 family protein; be 99.2 3.2E-11 1.1E-15 84.2 6.3 68 44-125 6-88 (107)
72 3u30_A Ubiquitin, linear DI-ub 99.2 9.5E-11 3.2E-15 86.6 8.6 68 44-125 95-162 (172)
73 1we7_A SF3A1 protein; structur 99.1 2.3E-10 7.8E-15 80.4 8.6 67 44-124 24-100 (115)
74 3u5c_f 40S ribosomal protein S 99.1 7.1E-12 2.4E-16 93.5 0.0 66 46-125 1-66 (152)
75 1oqy_A HHR23A, UV excision rep 99.1 1.1E-10 3.7E-15 97.7 7.1 70 43-125 5-76 (368)
76 2kjr_A CG11242; UBL, ubiquitin 99.1 5.9E-10 2E-14 77.0 8.9 73 40-125 10-89 (95)
77 3ai5_A Yeast enhanced green fl 99.1 5E-10 1.7E-14 92.0 9.0 70 42-125 230-299 (307)
78 2kzr_A Ubiquitin thioesterase 99.0 1.6E-10 5.4E-15 77.3 4.6 66 46-125 1-71 (86)
79 2fnj_B Transcription elongatio 99.0 8E-10 2.8E-14 80.0 7.3 62 46-122 3-64 (118)
80 1v6e_A Cytoskeleton-associated 99.0 7.9E-10 2.7E-14 75.3 6.8 67 46-125 8-81 (95)
81 4ajy_B Transcription elongatio 99.0 6.5E-10 2.2E-14 80.7 6.5 60 48-122 5-64 (118)
82 2kj6_A Tubulin folding cofacto 98.9 3.5E-09 1.2E-13 73.5 7.9 69 44-125 13-89 (97)
83 2dzm_A FAS-associated factor 1 98.9 2.2E-09 7.4E-14 75.2 6.6 65 46-124 9-74 (100)
84 2io1_B Small ubiquitin-related 98.9 5.6E-09 1.9E-13 71.9 7.5 69 43-125 5-73 (94)
85 3shq_A UBLCP1; phosphatase, hy 98.9 2.1E-09 7.3E-14 88.1 6.2 66 44-124 4-72 (320)
86 3a4r_A Nfatc2-interacting prot 98.9 1.6E-08 5.4E-13 67.3 9.2 71 41-125 3-74 (79)
87 2io0_B Small ubiquitin-related 98.9 6.1E-09 2.1E-13 71.5 7.2 70 42-125 2-71 (91)
88 4b6w_A Tubulin-specific chaper 98.9 3.4E-09 1.2E-13 71.9 5.7 66 46-125 3-77 (86)
89 1t0y_A Tubulin folding cofacto 98.9 6.8E-09 2.3E-13 73.9 7.3 67 45-124 6-79 (122)
90 1wm3_A Ubiquitin-like protein 98.8 1.2E-08 4.3E-13 66.4 7.4 66 46-125 2-67 (72)
91 1wjn_A Tubulin-folding protein 98.7 3.1E-08 1.1E-12 67.4 6.9 70 43-125 7-86 (97)
92 2d07_B Ubiquitin-like protein 98.7 5E-08 1.7E-12 66.8 7.7 69 43-125 15-83 (93)
93 1wz0_A Ubiquitin-like protein 98.6 8.4E-08 2.9E-12 67.4 7.2 68 44-125 23-90 (104)
94 2k8h_A Small ubiquitin protein 98.6 6E-08 2E-12 69.0 6.2 69 43-125 24-92 (110)
95 2eke_C Ubiquitin-like protein 98.6 1.9E-07 6.4E-12 66.1 7.1 67 44-125 30-96 (106)
96 2xzm_9 RPS31E; ribosome, trans 98.4 3.4E-08 1.2E-12 76.4 0.0 57 46-116 1-57 (189)
97 3kyd_D Small ubiquitin-related 98.3 3E-06 1E-10 61.0 7.8 69 43-125 38-106 (115)
98 2pjh_A Protein NPL4, nuclear p 98.2 1.2E-06 4.3E-11 58.4 3.9 70 44-125 3-74 (80)
99 2bps_A YUKD protein; ubiquitin 98.2 6.7E-06 2.3E-10 55.9 7.3 72 45-125 4-77 (81)
100 3goe_A DNA repair protein RAD6 98.1 1.5E-05 5.3E-10 54.5 8.4 70 43-125 7-76 (82)
101 3pge_A SUMO-modified prolifera 98.0 2.7E-05 9.2E-10 60.6 7.9 68 43-125 27-94 (200)
102 3tix_A Ubiquitin-like protein 97.8 3.7E-05 1.3E-09 60.4 6.2 68 43-125 55-122 (207)
103 2jxx_A Nfatc2-interacting prot 97.7 0.00011 3.8E-09 51.1 7.4 68 44-125 24-92 (97)
104 3v7o_A Minor nucleoprotein VP3 97.5 1.8E-05 6E-10 62.9 0.0 69 42-125 18-86 (227)
105 2kc2_A Talin-1, F1; FERM, adhe 97.3 0.0017 5.7E-08 47.4 9.0 40 41-80 5-46 (128)
106 3uf8_A Ubiquitin-like protein 97.0 0.002 7E-08 49.3 6.9 69 42-125 18-86 (209)
107 2al3_A TUG long isoform; TUG U 96.9 0.0029 1E-07 43.8 6.6 67 44-124 8-74 (90)
108 3ix6_A TS, tsase, thymidylate 96.7 0.00025 8.5E-09 59.5 0.0 69 42-125 18-86 (360)
109 4da1_A Protein phosphatase 1K, 96.4 0.00052 1.8E-08 56.3 0.0 68 43-125 28-95 (389)
110 2l76_A Nfatc2-interacting prot 96.4 0.022 7.5E-07 39.7 8.2 67 44-125 20-86 (95)
111 2daj_A KIAA0977 protein, COBL- 95.3 0.072 2.4E-06 36.9 6.9 71 39-122 4-76 (91)
112 1s3s_G P47 protein; AAA ATPase 94.9 0.1 3.5E-06 37.1 7.1 68 44-123 51-120 (127)
113 3qx1_A FAS-associated factor 1 94.6 0.17 5.9E-06 32.9 7.2 67 44-124 6-76 (84)
114 2dzk_A UBX domain-containing p 92.9 0.61 2.1E-05 32.1 7.8 67 44-123 12-82 (109)
115 4a3p_A Ubiquitin carboxyl-term 92.8 0.17 5.6E-06 38.7 5.2 73 45-124 127-201 (217)
116 1wj4_A KIAA0794 protein; UBX d 92.4 0.88 3E-05 32.1 8.3 66 44-123 42-111 (124)
117 3jyu_A Ubiquitin carboxyl-term 92.4 0.6 2E-05 35.9 8.0 70 45-124 139-213 (231)
118 2ns5_A Partitioning-defective 92.1 0.59 2E-05 31.8 6.7 68 44-118 1-70 (85)
119 3ivf_A Talin-1; FERM domain, c 91.3 0.96 3.3E-05 36.3 8.3 61 55-124 12-77 (371)
120 1h4r_A Merlin; FERM, neurofibr 89.8 2.3 7.7E-05 33.2 9.1 68 43-123 20-90 (314)
121 1vd2_A Protein kinase C, IOTA 89.1 3.2 0.00011 28.1 8.2 40 43-83 4-43 (89)
122 1ryj_A Unknown; beta/alpha pro 88.8 2.4 8.1E-05 26.6 7.0 30 45-75 4-33 (70)
123 1vjk_A Molybdopterin convertin 88.6 1.1 3.7E-05 29.8 5.6 38 43-80 7-51 (98)
124 2cr5_A Reproduction 8; UBX dom 88.4 1.6 5.4E-05 29.9 6.5 66 44-123 22-90 (109)
125 1tyg_B YJBS; alpha beta barrel 87.3 1 3.5E-05 30.2 4.9 58 44-125 19-77 (87)
126 4e71_A Plexin-B2, MM1; transme 87.3 2 6.9E-05 30.4 6.6 35 45-79 11-47 (111)
127 1ef1_A Moesin; membrane, FERM 87.3 4.6 0.00016 31.0 9.2 65 45-122 1-69 (294)
128 4efo_A Serine/threonine-protei 87.0 2.4 8.1E-05 29.1 6.6 45 55-112 23-67 (94)
129 3ivf_A Talin-1; FERM domain, c 86.4 3.5 0.00012 33.0 8.4 49 29-80 72-120 (371)
130 1oey_A P67-PHOX, neutrophil cy 85.9 3.3 0.00011 27.7 6.8 38 44-83 4-41 (83)
131 1q1o_A Cell division control p 85.0 2.6 9E-05 29.2 6.1 40 42-81 2-48 (98)
132 1f0z_A THis protein; ubiquitin 84.0 2.2 7.4E-05 26.3 4.9 56 46-125 1-56 (66)
133 2r2o_A Plexin-B1; effector dom 83.4 2.4 8.2E-05 31.1 5.6 35 45-79 24-64 (138)
134 3po0_A Small archaeal modifier 83.0 2.1 7.1E-05 27.5 4.6 25 56-80 18-42 (89)
135 1ip9_A BEM1 protein; ubiquitin 82.3 3.6 0.00012 27.9 5.7 36 44-80 11-46 (85)
136 2l32_A Small archaeal modifier 81.5 1.9 6.3E-05 27.8 3.9 29 46-75 1-30 (74)
137 3qij_A Protein 4.1; cytoskelet 81.1 2.6 8.9E-05 33.0 5.4 42 39-80 10-52 (296)
138 4e74_A Plexin-A4; RBD, structu 80.4 7.7 0.00026 27.6 7.2 35 45-79 13-50 (117)
139 3h6n_A Plexin-D1; structural g 77.3 15 0.00052 26.4 8.0 27 53-79 14-40 (127)
140 2v1y_A Phosphatidylinositol-4, 75.6 7.7 0.00026 27.2 5.9 41 42-82 16-56 (108)
141 3rpf_C Molybdopterin convertin 75.4 3.7 0.00013 25.7 3.9 18 60-78 16-33 (74)
142 2i1j_A Moesin; FERM, coiled-co 75.0 14 0.00047 32.0 8.6 67 44-123 3-73 (575)
143 2ylm_A Ubiquitin carboxyl-term 71.4 16 0.00056 31.2 8.1 75 35-117 321-407 (530)
144 1t3q_A Quinoline 2-oxidoreduct 70.2 5.6 0.00019 29.0 4.3 30 44-74 8-37 (168)
145 3dwg_C 9.5 kDa culture filtrat 69.8 2 6.9E-05 27.9 1.7 21 59-80 20-40 (93)
146 2k5p_A THis protein, thiamine- 69.4 5 0.00017 26.0 3.5 57 46-125 1-59 (78)
147 4a6q_A Histone deacetylase com 69.0 13 0.00045 27.3 6.1 68 57-124 55-131 (143)
148 3hm6_X Plexin-B1; structural g 66.7 29 0.00099 31.1 8.8 34 45-78 257-296 (644)
149 3ig3_A Plxna3 protein; plexin 65.3 29 0.00099 31.0 8.5 35 45-79 233-270 (627)
150 2qjl_A URM1, ubiquitin-related 62.9 19 0.00066 23.6 5.5 24 56-79 20-45 (99)
151 3kuz_A Plexin-C1; structural g 62.7 40 0.0014 24.2 8.7 35 45-79 19-62 (126)
152 2kl0_A Putative thiamin biosyn 60.4 6 0.00021 25.2 2.5 54 46-124 1-54 (73)
153 1wgr_A Growth factor receptor- 59.1 21 0.00071 24.5 5.3 37 44-80 8-44 (100)
154 2q5w_D Molybdopterin convertin 58.6 12 0.00041 23.0 3.7 24 56-79 16-39 (77)
155 2kmm_A Guanosine-3',5'-BIS(dip 58.0 14 0.00048 22.3 3.9 30 46-77 1-30 (73)
156 3au4_A Myosin-X; protein-prote 56.6 23 0.00077 29.9 6.1 38 44-81 215-252 (555)
157 3pvl_A Myosin VIIA isoform 1; 56.2 39 0.0013 29.7 7.8 38 44-81 262-299 (655)
158 3chb_D Cholera toxin; toxin/re 55.2 26 0.00089 24.1 5.1 50 25-78 20-69 (104)
159 1y8x_B Ubiquitin-activating en 53.7 8.3 0.00029 26.3 2.5 64 57-125 6-78 (98)
160 2i1s_A Hypothetical protein; m 49.9 21 0.00071 26.3 4.3 23 58-80 24-46 (188)
161 2g1e_A Hypothetical protein TA 49.0 10 0.00034 24.0 2.2 20 60-79 19-38 (90)
162 2zjd_A Microtubule-associated 46.9 74 0.0025 22.5 7.3 62 44-117 34-102 (130)
163 1p9y_A Trigger factor, TF; alp 46.2 26 0.00088 24.0 4.1 33 44-80 2-36 (121)
164 2kkc_A Sequestosome-1; P62, PB 46.1 46 0.0016 22.8 5.3 18 66-83 42-59 (102)
165 1vq8_S 50S ribosomal protein L 45.7 23 0.00077 23.6 3.6 26 55-80 22-47 (85)
166 1wgk_A Riken cDNA 2900073H19 p 45.2 39 0.0013 23.2 4.9 35 45-79 11-56 (114)
167 1mli_A Muconolactone isomerase 44.7 7.9 0.00027 26.7 1.2 36 58-97 7-45 (96)
168 2r2q_A Gamma-aminobutyric acid 44.7 55 0.0019 22.2 5.6 61 44-117 26-92 (110)
169 3r8s_T 50S ribosomal protein L 44.6 29 0.001 23.4 4.1 28 55-82 27-54 (93)
170 1n62_A Carbon monoxide dehydro 44.3 25 0.00085 25.8 4.0 27 46-73 4-30 (166)
171 2zjr_Q 50S ribosomal protein L 44.0 24 0.00083 23.9 3.6 23 58-80 25-47 (95)
172 3j21_T 50S ribosomal protein L 42.4 36 0.0012 22.6 4.2 26 55-80 23-48 (86)
173 2nnz_A Hypothetical protein; b 42.3 11 0.00036 27.7 1.6 31 44-75 28-61 (153)
174 3hrd_D Nicotinate dehydrogenas 41.8 27 0.00094 25.6 3.9 26 46-72 4-29 (160)
175 4dxa_B KREV interaction trappe 41.7 23 0.0008 27.6 3.7 29 44-72 4-34 (322)
176 3tca_A Amyloid beta A4 precurs 41.2 54 0.0019 24.3 5.6 36 45-80 34-69 (291)
177 1ffv_A CUTS, iron-sulfur prote 41.1 30 0.001 25.3 4.0 27 46-73 4-30 (163)
178 2dhz_A RAP guanine nucleotide 40.1 97 0.0033 21.9 7.0 37 45-81 9-45 (120)
179 2cu3_A Unknown function protei 40.1 30 0.001 20.8 3.3 52 52-125 3-54 (64)
180 2cu1_A Mitogen-activated prote 38.8 88 0.003 21.8 5.8 26 55-80 17-42 (103)
181 3lxf_A Ferredoxin; iron, iron- 38.1 40 0.0014 22.2 4.0 25 47-71 2-26 (104)
182 3onh_A Ubiquitin-activating en 38.1 47 0.0016 23.9 4.5 54 65-124 19-72 (127)
183 1ltr_D ETB-R2, heat-labIle ent 38.1 34 0.0011 23.8 3.6 49 26-78 20-68 (113)
184 2bt6_A Adrenodoxin 1; rutheniu 38.1 43 0.0015 21.9 4.1 28 44-71 5-32 (108)
185 1rws_A Hypothetical protein PF 37.4 20 0.00068 22.5 2.2 21 54-76 21-41 (77)
186 3tve_T 50S ribosomal protein L 37.4 41 0.0014 22.6 3.9 25 56-80 22-46 (92)
187 1rm6_C 4-hydroxybenzoyl-COA re 36.5 35 0.0012 24.7 3.7 28 47-75 4-31 (161)
188 2jvr_A Nucleolar protein 3; RN 31.6 72 0.0025 21.2 4.4 37 33-78 16-52 (111)
189 3hk0_A Growth factor receptor- 31.5 68 0.0023 25.0 4.8 37 42-78 5-41 (256)
190 2ktr_A Sequestosome-1; autopha 31.2 1.3E+02 0.0045 21.0 5.9 52 32-83 7-74 (117)
191 2wlb_A ETP1-FD, electron trans 31.1 99 0.0034 19.8 5.0 29 44-72 2-30 (103)
192 3m95_A Autophagy related prote 30.6 1.2E+02 0.0042 21.3 5.7 41 44-84 35-81 (125)
193 2c7h_A RBBP6, retinoblastoma-b 30.4 77 0.0026 21.2 4.3 22 59-80 21-43 (86)
194 2nsc_A Trigger factor, TF; cha 30.4 64 0.0022 21.5 4.0 33 46-80 1-33 (109)
195 2y5c_A Adrenodoxin-like protei 30.1 74 0.0025 20.8 4.3 27 45-71 5-31 (109)
196 1b44_D ETB-POL, protein (B-POL 30.0 43 0.0015 23.7 3.1 50 25-78 19-68 (129)
197 2pmv_A Gastric intrinsic facto 28.6 1E+02 0.0036 25.7 5.8 58 58-125 315-391 (399)
198 2y3a_A Phosphatidylinositol-4, 28.4 96 0.0033 29.3 6.0 41 42-82 48-88 (1092)
199 1jq4_A Methane monooxygenase c 27.1 87 0.003 19.9 4.1 29 45-73 4-32 (98)
200 3hvz_A Uncharacterized protein 26.4 1E+02 0.0034 19.7 4.2 31 47-79 7-37 (78)
201 4gmv_A RAS-associated and plec 25.6 1.2E+02 0.0041 24.0 5.4 34 46-79 32-65 (281)
202 3u52_E Phenol hydroxylase comp 25.2 1.8E+02 0.0063 20.6 6.3 72 44-122 22-100 (119)
203 2kvr_A Ubiquitin carboxyl-term 25.0 94 0.0032 21.7 4.2 24 59-82 59-82 (130)
204 1wgy_A RAP guanine nucleotide 24.7 76 0.0026 21.9 3.6 34 48-81 12-45 (104)
205 2jrh_A Mitogen-activated prote 24.4 1.6E+02 0.0055 20.1 5.1 27 54-80 12-38 (94)
206 4a17_R RPL23A, 60S ribosomal p 24.1 73 0.0025 23.4 3.6 26 55-80 87-112 (150)
207 2zkr_s 60S ribosomal protein L 23.7 89 0.0031 23.1 4.0 25 56-80 94-118 (156)
208 3u5e_X 60S ribosomal protein L 23.4 93 0.0032 22.6 4.0 25 56-80 80-104 (142)
209 2bb6_A TCII, TC II, transcobal 22.9 2.2E+02 0.0076 23.9 6.7 75 46-124 319-405 (414)
210 3h9d_A ATG8, microtubule-assoc 22.3 2E+02 0.0068 19.9 7.0 61 44-117 30-96 (119)
211 1frr_A Ferredoxin I; electron 21.6 1.3E+02 0.0043 18.8 4.0 25 46-71 2-26 (95)
212 3rui_B Autophagy-related prote 21.5 2.1E+02 0.007 19.8 6.0 41 44-84 29-75 (118)
213 2npt_B Mitogen-activated prote 21.3 2E+02 0.0069 19.8 5.1 26 55-80 29-54 (100)
214 3hui_A Ferredoxin; cytochrome 21.3 1.3E+02 0.0044 20.7 4.3 26 46-71 22-47 (126)
215 2c60_A Human mitogen-activated 21.1 2E+02 0.0068 20.1 5.1 27 54-80 39-65 (111)
216 1uwm_A Ferredoxin VI, FDVI; el 21.0 1.2E+02 0.0041 19.5 3.9 25 47-71 2-26 (106)
217 1xlq_A Putidaredoxin, PDX; [2F 20.6 1.3E+02 0.0044 19.3 4.0 25 47-71 2-26 (106)
No 1
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.94 E-value=5.5e-28 Score=172.08 Aligned_cols=83 Identities=29% Similarity=0.574 Sum_probs=76.4
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcC--CCCCCCCcccccccccceEEeecCeeeccCcchhhhcCC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSH--MPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGI 120 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~--~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGI 120 (125)
.++|+|+|++++|+.|+|+|++++||+|||++|++++.. .++.|+++|||+|||+|+||+|+|++|.+|+++|++|||
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 378999999999999999999999999999999999753 346788999999999999999999888788999999999
Q ss_pred cCCCC
Q 048546 121 RDGDQ 125 (125)
Q Consensus 121 kdGd~ 125 (125)
++|++
T Consensus 85 ~~g~~ 89 (105)
T 1v2y_A 85 RNRDE 89 (105)
T ss_dssp CSSEE
T ss_pred CCCCE
Confidence 99974
No 2
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.54 E-value=3e-14 Score=95.88 Aligned_cols=70 Identities=20% Similarity=0.383 Sum_probs=60.6
Q ss_pred CCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCc
Q 048546 42 PEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIR 121 (125)
Q Consensus 42 ~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIk 121 (125)
+...|+|+|+..+|+.+.|+|+.++||.+||+.|++.....+ .+..|+|+| +.++|+.+|.+|||+
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~qrL~~~G-k~L~D~~tL~~~gi~ 79 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQ 79 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG-------------GGCEEEETT-EECCTTCBTGGGTCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCCh-------------hhEEEEECC-eECCCcCcHHHCCCC
Confidence 346799999999999999999999999999999999875443 455799999 556889999999999
Q ss_pred CCCC
Q 048546 122 DGDQ 125 (125)
Q Consensus 122 dGd~ 125 (125)
+|+.
T Consensus 80 ~g~~ 83 (91)
T 3v6c_B 80 KEST 83 (91)
T ss_dssp TTCE
T ss_pred CCCE
Confidence 9973
No 3
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.54 E-value=3.5e-14 Score=92.60 Aligned_cols=68 Identities=28% Similarity=0.374 Sum_probs=59.7
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
..|+|+|+..+|+.+.++|+.++||++||+.|+......+ .+..|+|+| +.++|+.+|++|||++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~-------------~~qrL~~~G-~~L~d~~tL~~~~i~~~ 68 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD-------------DLFWLTFEG-KPLEDQLPLGEYGLKPL 68 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG-------------GGEEEEETT-EECCTTSBGGGGTCCTT
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCH-------------HHEEEEECC-EECCCCCcHHHCCCCCC
Confidence 5799999999999999999999999999999999875443 456799999 55688999999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
+.
T Consensus 69 ~~ 70 (79)
T 3phx_B 69 ST 70 (79)
T ss_dssp CE
T ss_pred CE
Confidence 73
No 4
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=6.7e-14 Score=90.86 Aligned_cols=69 Identities=19% Similarity=0.352 Sum_probs=59.2
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
+..|+|+|+..+|+.+.++|+.++||++||+.|++.....+ .+..|+|+| +.++|+.+|.+|||++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~-------------~~qrL~~~g-k~L~d~~tL~~~~i~~ 70 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPV-------------RQQRLLFKG-KALADGKRLSDYSIGP 70 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCT-------------TTCEEEETT-EECCTTSBGGGGTCCS
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCH-------------HHEEEEECC-eECCCCCcHHHcCCCC
Confidence 46799999999999999999999999999999999865333 345689999 5558899999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
|++
T Consensus 71 g~~ 73 (81)
T 2dzi_A 71 NSK 73 (81)
T ss_dssp SBC
T ss_pred CCE
Confidence 974
No 5
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.52 E-value=5.3e-14 Score=92.82 Aligned_cols=69 Identities=22% Similarity=0.369 Sum_probs=59.7
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
...|+|+|+..+|+.+.|+|+.++||.+||+.|++.....+ .+..|+|+| +.++|+.+|.+|||++
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~-------------~~qrL~~~G-~~L~d~~tL~~~~i~~ 75 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP-------------QQQRLIYSG-KQMNDEKTAADYKILG 75 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG-------------GGCCEEETT-EECCTTSBGGGGTCCT
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCH-------------HHEEEEECC-eECCCCCcHHHcCCCC
Confidence 35799999999999999999999999999999999875433 345699999 5568999999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
|+.
T Consensus 76 ~~~ 78 (88)
T 3dbh_I 76 GSV 78 (88)
T ss_dssp TCE
T ss_pred CCE
Confidence 973
No 6
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.51 E-value=8.5e-14 Score=93.65 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=61.1
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
..-|+|+|++.+|+.+.++|+.++||++||+.|++.....+ .+..|+|+|+.+++|+.+|++|||++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~QrLi~~Gk~lL~D~~tL~~y~I~~ 74 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPV-------------SKQTLIVDGIVILREDLTVEQCQIVP 74 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCG-------------GGEEEEETTEECCCSSSBHHHHTCCT
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcCh-------------HHEEEEECCEEecCCcCCHHHcCCCC
Confidence 36799999999999999999999999999999999875433 56779999954278999999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
|+.
T Consensus 75 gs~ 77 (84)
T 2kk8_A 75 TSD 77 (84)
T ss_dssp TSC
T ss_pred CCE
Confidence 974
No 7
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.51 E-value=7e-14 Score=92.46 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=60.7
Q ss_pred CCCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCC
Q 048546 41 LPEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGI 120 (125)
Q Consensus 41 ~~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGI 120 (125)
.+...|+|+|+..+|+.+.++|+.++||.+||++|++.....+ .+..|+|+| +.++|+++|++|||
T Consensus 3 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~-------------~~qrL~~~G-k~L~d~~tL~~~~i 68 (87)
T 1wh3_A 3 SGSSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPK-------------KQQQLEFQG-QVLQDWLGLGIYGI 68 (87)
T ss_dssp CCSSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCT-------------TTEEEEETT-EECCSSSBHHHHTC
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCCh-------------HHEEEEECC-EEccCCCCHHHCCC
Confidence 4567899999999999999999999999999999999865333 456799999 55688999999999
Q ss_pred cCCC
Q 048546 121 RDGD 124 (125)
Q Consensus 121 kdGd 124 (125)
++|+
T Consensus 69 ~~g~ 72 (87)
T 1wh3_A 69 QDSD 72 (87)
T ss_dssp CTTE
T ss_pred CCCC
Confidence 9986
No 8
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.51 E-value=7.2e-14 Score=89.13 Aligned_cols=66 Identities=23% Similarity=0.393 Sum_probs=57.7
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+|+..+|+.+.++|+.++||.+||+.|++.....+ .+..|+|+| +.++|+.+|++|||++|+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~-------------~~q~L~~~g-~~L~d~~tL~~~~i~~g~~ 66 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP-------------QQQRLIYSG-KQMNDEKTAADYKILGGSV 66 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCG-------------GGEEEEETT-EECCTTSBGGGGTCCTTCE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcCh-------------HHEEEEECC-EECCCCCcHHHcCCCCCCE
Confidence 89999999999999999999999999999999875333 566799999 5558899999999999973
No 9
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.50 E-value=8.5e-14 Score=88.80 Aligned_cols=66 Identities=20% Similarity=0.374 Sum_probs=57.7
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+|+..+|+.+.++|+.++||++||+.|++.....+ .+..|+|+| +.++|+.+|++|||++|+.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~-------------~~q~L~~~g-~~L~d~~tL~~~~i~~g~~ 66 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQREST 66 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCG-------------GGEEEEETT-EECCTTCBTGGGTCCTTCE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCH-------------HHeEEEECC-eECCCCCcHHHcCCCCCCE
Confidence 89999999999999999999999999999999875333 567799999 5558899999999999973
No 10
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.50 E-value=7.4e-14 Score=93.93 Aligned_cols=66 Identities=23% Similarity=0.393 Sum_probs=58.0
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+|+..+|+.+.|+|+.++||++||+.|++.....+ .+..|+|+| +.++|+.+|++|||++|+.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~qrLi~~G-k~L~D~~tL~~~~i~~g~~ 66 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPP-------------QQQRLIYSG-KQMNDEKTAADYKILGGSV 66 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG-------------GGCEEEETT-EECCTTSBTTTTTCCTTCE
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh-------------hHEEEEECC-eECCCCCcHHHcCCCCCCE
Confidence 89999999999999999999999999999999875433 455799999 6668999999999999973
No 11
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=1e-13 Score=90.47 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=58.7
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
..|+|+|+..+|+.+.|+|+.++||.|||+.|++.....+ .+..|+|+| +.++|+.+|.+|||++|
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-------------~~qrL~~~g-~~L~d~~tL~~~~i~~~ 67 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQKW 67 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG-------------GGCEEEETT-EECCTTSBTGGGTCCTT
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh-------------HHEEEEECC-EECCCCCCHHHcCCCCC
Confidence 5799999999999999999999999999999999875443 345688999 55688999999999998
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
+.
T Consensus 68 ~~ 69 (85)
T 3mtn_B 68 ST 69 (85)
T ss_dssp CE
T ss_pred CE
Confidence 73
No 12
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.49 E-value=2.1e-13 Score=89.64 Aligned_cols=69 Identities=22% Similarity=0.413 Sum_probs=59.2
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHh--cCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCc
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAF--SHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIR 121 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~--~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIk 121 (125)
..|+|+|+..+|+.+.++|+.++||++||+.|+..+ ...+. .+..|+|+| +.++|+++|++|||+
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~------------~~qrLi~~G-k~L~D~~tL~~~~i~ 70 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPV------------AGQKLIYAG-KILSDDVPIRDYRID 70 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCG------------GGEEEEETT-EECCTTSBGGGGCCC
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCH------------HHeEEEECC-EECcCCCCHHHcCCC
Confidence 469999999999999999999999999999999984 22332 567899999 566899999999999
Q ss_pred CCCC
Q 048546 122 DGDQ 125 (125)
Q Consensus 122 dGd~ 125 (125)
+|+.
T Consensus 71 ~g~~ 74 (85)
T 2wyq_A 71 EKNF 74 (85)
T ss_dssp TTSE
T ss_pred CCCE
Confidence 9973
No 13
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=7e-14 Score=91.52 Aligned_cols=68 Identities=19% Similarity=0.342 Sum_probs=58.4
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
..|+|+|+..+|+.+.|+|+.++||.+||++|++.....+ .+..|+|+| +.++|+.+|++|||++|
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~-------------~~qrL~~~g-~~L~d~~tL~~~~i~~~ 67 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIHNH 67 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCG-------------GGEEEEETB-EECCTTCBTTTTTCCTT
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH-------------HHEEEEECC-eECCCCCCHHHCCCCCC
Confidence 5799999999999999999999999999999999875443 466799999 55688999999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
++
T Consensus 68 ~~ 69 (85)
T 3n3k_B 68 SA 69 (85)
T ss_dssp CE
T ss_pred CE
Confidence 73
No 14
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.1e-13 Score=94.74 Aligned_cols=67 Identities=21% Similarity=0.421 Sum_probs=58.7
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
..|+|+|+..+|+.|.|+|+.++||.+||+.|++.....+ .+..|+|+| +.++|+.+|.+|||++|
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~qrLi~~G-k~L~D~~tL~~~~i~~g 86 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQKE 86 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG-------------GGCEEEETT-EECCTTCBSGGGTCCTT
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh-------------hHEEEEECC-EECCCCCcHHHCCCCCC
Confidence 6899999999999999999999999999999999875433 455799999 55689999999999998
Q ss_pred C
Q 048546 124 D 124 (125)
Q Consensus 124 d 124 (125)
+
T Consensus 87 ~ 87 (98)
T 4hcn_B 87 S 87 (98)
T ss_dssp E
T ss_pred C
Confidence 6
No 15
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=2.1e-13 Score=92.82 Aligned_cols=67 Identities=21% Similarity=0.456 Sum_probs=57.6
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHh--cCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAF--SHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~--~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
|+|+|+..+|+.+.++|+.++||++||+.|+..+ ...|. .+..|+|+| +.++|+.+|++|||++|
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~------------~~qrLi~~G-k~L~D~~tL~~ygI~~g 67 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPV------------AGQKLIYAG-KILNDDTALKEYKIDEK 67 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCT------------TTEEEEETT-EECCTTSBGGGGTCCSS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCCh------------hhEEEEECC-EECCCcCcHHHCCCCCC
Confidence 8999999999999999999999999999999985 22332 566799999 55688999999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
+.
T Consensus 68 ~~ 69 (95)
T 1uel_A 68 NF 69 (95)
T ss_dssp SE
T ss_pred CE
Confidence 73
No 16
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.47 E-value=2.1e-13 Score=87.71 Aligned_cols=65 Identities=20% Similarity=0.457 Sum_probs=56.6
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+|+. +|+.+.++|+.++||.+||+.|+......+ .+..|+|+| +.++|+.+|++|||++|+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~-------------~~qrL~~~g-k~L~d~~tL~~~~i~~g~~ 69 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPV-------------ANQRLIYSG-KILKDDQTVESYHIQDGHS 69 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCG-------------GGEEEEETT-EECCTTSBTGGGTCCTTCE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCH-------------HHEEEEECC-eEcCCCCCHHHcCCCCCCE
Confidence 8999988 999999999999999999999999875333 566799999 5568889999999999973
No 17
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=1.2e-13 Score=92.81 Aligned_cols=68 Identities=24% Similarity=0.415 Sum_probs=58.1
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
+.|+|.|++.+|+.+.++|+.++||++||++|++.....+ .+..|+|+| +.++|+++|++|||++|
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~qrL~~~G-k~L~D~~tL~~~gi~~g 73 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQKE 73 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCG-------------GGCEEEETT-EECCTTSBSGGGTCCTT
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCh-------------hhEEEEECC-EECCCCCcHHHcCCCCC
Confidence 6799999999999999999999999999999999875433 455789999 55588999999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
+.
T Consensus 74 ~~ 75 (88)
T 1sif_A 74 ST 75 (88)
T ss_dssp CE
T ss_pred CE
Confidence 73
No 18
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=7.4e-14 Score=98.57 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=59.4
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
.|+|+|+.+.|+.+.|+|++++||++||+.|+++....+ .+.+|+|.| |.++|+.+|.+|||++|+
T Consensus 28 mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~-------------~qQrLi~~G-k~L~D~~TL~dygI~~gs 93 (100)
T 1uh6_A 28 MIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRW-------------NKIVLKKWY-TIFKDHVSLGDYEIHDGM 93 (100)
T ss_dssp EEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCG-------------GGCEEEETT-EECCSSCBHHHHTCCTTE
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCH-------------HHEEEEECC-EECCCCCCHHHcCCCCCC
Confidence 399999999999999999999999999999999875333 677899999 566899999999999986
Q ss_pred C
Q 048546 125 Q 125 (125)
Q Consensus 125 ~ 125 (125)
+
T Consensus 94 t 94 (100)
T 1uh6_A 94 N 94 (100)
T ss_dssp E
T ss_pred E
Confidence 3
No 19
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.47 E-value=1.9e-13 Score=91.19 Aligned_cols=67 Identities=19% Similarity=0.379 Sum_probs=58.4
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
...|+|+|+..+|+.+.|+|+.++||.+||+.|+......+ .+..|+|+| ++++|+.+|.+||| +
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~-------------~~qrLi~~G-k~L~d~~tL~~~~i-~ 67 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS-------------EKQRLIYQG-RVLQDDKKLQEYNV-G 67 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCG-------------GGEEEEETT-EECCTTSBGGGGTC-T
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH-------------HHEEEEECC-eECCCCCCHHHcCC-C
Confidence 46799999999999999999999999999999999875433 456799999 66689999999999 7
Q ss_pred CC
Q 048546 123 GD 124 (125)
Q Consensus 123 Gd 124 (125)
|+
T Consensus 68 g~ 69 (90)
T 4dwf_A 68 GK 69 (90)
T ss_dssp TE
T ss_pred Cc
Confidence 75
No 20
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.47 E-value=1.7e-13 Score=92.25 Aligned_cols=67 Identities=19% Similarity=0.364 Sum_probs=58.2
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
.|+|+|+..+|+.+.|+|+.++||.+||+.|++.+...+ .+..|+|+| +.++|+.+|.+|||++|+
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~-------------~~qrL~~~G-~~L~d~~tL~~~~i~~~~ 66 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQKES 66 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG-------------GGEEEEETT-EECCTTSBTGGGTCCTTC
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCCh-------------hHEEEEECC-EECCCCCcHHHcCCCCCC
Confidence 389999999999999999999999999999999875433 466799999 556899999999999997
Q ss_pred C
Q 048546 125 Q 125 (125)
Q Consensus 125 ~ 125 (125)
.
T Consensus 67 ~ 67 (96)
T 3k9o_B 67 T 67 (96)
T ss_dssp E
T ss_pred E
Confidence 3
No 21
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.46 E-value=2.4e-13 Score=88.21 Aligned_cols=67 Identities=25% Similarity=0.471 Sum_probs=57.9
Q ss_pred CeEEEEEccCCcEE-EEE-eCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 45 PLKLSVRKLDGSCF-DIE-VMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 45 aMkltV~k~~g~~~-~V~-V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
.|+|+|+..+|+.+ .++ |+.++||++||+.|+......+ .+..|+|+| +.++|+++|++|||++
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~-------------~~qrL~~~g-~~L~d~~tL~~~~i~~ 67 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEP-------------GLQRLFYRG-KQMEDGHTLFDYEVRL 67 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCG-------------GGEEEEETT-EECCTTCBTTTTTCCT
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcCh-------------hhEEEEECC-EECCCCCCHHHcCCCC
Confidence 69999999999985 999 9999999999999999875333 566799999 5558899999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
|+.
T Consensus 68 g~~ 70 (78)
T 2faz_A 68 NDT 70 (78)
T ss_dssp TCE
T ss_pred CCE
Confidence 973
No 22
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.46 E-value=2.4e-13 Score=90.39 Aligned_cols=66 Identities=20% Similarity=0.387 Sum_probs=57.9
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
..|+|+|+..+|+.+.++|+.++||++||+.|++.....+ .+..|+|+| ++++|+.+|.+||| +|
T Consensus 16 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~-------------~~qrLi~~G-k~L~D~~tL~~~~i-~g 80 (88)
T 4eew_A 16 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPS-------------EKQRLIYQG-RVLQDDKKLQEYNV-GG 80 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCG-------------GGEEEEETT-EECCTTSBGGGGTC-TT
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH-------------HHEEEEECC-EECCCCCcHHHcCC-CC
Confidence 5699999999999999999999999999999999875444 455799999 66689999999999 77
Q ss_pred C
Q 048546 124 D 124 (125)
Q Consensus 124 d 124 (125)
+
T Consensus 81 ~ 81 (88)
T 4eew_A 81 K 81 (88)
T ss_dssp E
T ss_pred c
Confidence 5
No 23
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.44 E-value=3.7e-13 Score=91.57 Aligned_cols=66 Identities=20% Similarity=0.378 Sum_probs=57.6
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+|+..+|+.+.++|+.++||.+||+.|++.....+ .+..|+|+| +.++|+++|++|||++|+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~-------------~~qrL~~~G-k~L~D~~tL~~~gi~~g~~ 66 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQKEST 66 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCG-------------GGEEEEETT-EECCTTSBTGGGTCCTTCE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh-------------hhEEEEECC-EECCCCCCHHHcCCCCCCE
Confidence 89999999999999999999999999999999864333 566799999 5558899999999999973
No 24
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2e-13 Score=95.22 Aligned_cols=66 Identities=21% Similarity=0.435 Sum_probs=56.9
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+|+..+|+.+.|+|+.++||.+||+.|+......+ .+..|+|+| ++++|+.+|.+|||++|+.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~QrLi~~G-k~L~D~~tL~~~~i~~g~~ 67 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEE-------------SQIKLIYSG-KVLQDSKTVSECGLKDGDQ 67 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCG-------------GGCEEEETT-EECCTTSBTTTTTCCTTCE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCh-------------hhEEEEECC-EECCCcCCHHHcCCCCCCE
Confidence 89999999999999999999999999999999865333 355799999 6668999999999999973
No 25
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.43 E-value=5e-13 Score=93.56 Aligned_cols=68 Identities=10% Similarity=0.301 Sum_probs=60.1
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
.-|.|.|+.+.|+++.|.|.++.||++||+.|+.+....+ ++..|+|+| +.++|+.||.+|||.||
T Consensus 20 ~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~-------------~qQrLif~G-k~LkD~~TL~dY~I~dg 85 (93)
T 3plu_A 20 HMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQP-------------NKIVLQKGG-SVLKDHISLEDYEVHDQ 85 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCG-------------GGEEEEETT-EECCTTSBTGGGTCCTT
T ss_pred ceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCH-------------HHEEEEeCC-EEccCcCCHHHcCCCCC
Confidence 4589999999999999999999999999999999864333 678899999 66789999999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
++
T Consensus 86 st 87 (93)
T 3plu_A 86 TN 87 (93)
T ss_dssp CE
T ss_pred CE
Confidence 74
No 26
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.43 E-value=2.8e-13 Score=90.87 Aligned_cols=68 Identities=28% Similarity=0.374 Sum_probs=58.8
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
..|+|+|+..+|+.+.++|+.++||++||+.|+......+ .+..|+|+| +.++|+++|++|||++|
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~-------------~~qrL~~~G-k~L~D~~tL~~~~I~~g 68 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD-------------DLFWLTFEG-KPLEDQLPLGEYGLKPL 68 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCT-------------TTEEEESSS-SCCCTTSBHHHHHCSTT
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCCh-------------hHEEEEECC-EECCCCCcHHHcCCCCC
Confidence 4699999999999999999999999999999999865433 456789999 55689999999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
+.
T Consensus 69 ~~ 70 (88)
T 2hj8_A 69 ST 70 (88)
T ss_dssp CE
T ss_pred CE
Confidence 73
No 27
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.42 E-value=4e-13 Score=87.51 Aligned_cols=67 Identities=21% Similarity=0.288 Sum_probs=58.8
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
.|+|+|+..+|+.+.++|..+.||.+||++|++.....+ .+..|+|+|+.| +|++||++|||++||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~-------------~~qrL~~~G~~L-~d~~tl~~~~i~~~~ 68 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM-------------NSLRFLFEGQRI-ADNHTPKELGMEEED 68 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG-------------GGEEEEETTEEC-CTTCCHHHHTCCTTE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCc-------------ccEEEEECCEEe-CCCCCHHHcCCCCCC
Confidence 599999999999999999999999999999999865333 577899999555 788999999999997
Q ss_pred C
Q 048546 125 Q 125 (125)
Q Consensus 125 ~ 125 (125)
.
T Consensus 69 ~ 69 (79)
T 2uyz_B 69 V 69 (79)
T ss_dssp E
T ss_pred E
Confidence 3
No 28
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=1.1e-12 Score=87.16 Aligned_cols=69 Identities=33% Similarity=0.416 Sum_probs=58.6
Q ss_pred CCCeEEEEEccCC-cEEEEE-eCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCC
Q 048546 43 EQPLKLSVRKLDG-SCFDIE-VMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGI 120 (125)
Q Consensus 43 ~~aMkltV~k~~g-~~~~V~-V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGI 120 (125)
+..|+|+|+..+| +.+.|+ |+.++||.+||+.|++.....+ .+..|+|.| +.++|+++|.+|||
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~-------------~~qrL~~~g-k~L~d~~tL~~~~i 70 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRP-------------ECQRLFYRG-KQLENGYTLFDYDV 70 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCT-------------TTEEEEETT-EECCSSSBHHHHTC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcCh-------------hhEEEEECC-eECCCCCCHHHCCC
Confidence 4679999999999 689994 9999999999999999864333 456789999 55689999999999
Q ss_pred cCCCC
Q 048546 121 RDGDQ 125 (125)
Q Consensus 121 kdGd~ 125 (125)
++|+.
T Consensus 71 ~~g~~ 75 (89)
T 1wy8_A 71 GLNDI 75 (89)
T ss_dssp CTTCE
T ss_pred CCCCE
Confidence 99873
No 29
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.41 E-value=6.2e-13 Score=92.75 Aligned_cols=71 Identities=17% Similarity=0.299 Sum_probs=55.8
Q ss_pred CCCCCCeEEEEEccCCcEEEE--EeCCCCcHHHHHHHH-HHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhh
Q 048546 40 KLPEQPLKLSVRKLDGSCFDI--EVMKTATIAELRQAV-EAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIK 116 (125)
Q Consensus 40 ~~~~~aMkltV~k~~g~~~~V--~V~~~ATV~dLK~aI-~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~ 116 (125)
+-....|+|+|++.+|+.|.+ +|+.++||++||+.| +.... .|. .+..|+|+| ++++|+.+|+
T Consensus 14 ~~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g-ip~------------~~QrLi~~G-k~L~D~~tL~ 79 (98)
T 4a20_A 14 KMDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA-SHI------------SEIKLLLKG-KVLHDNLFLS 79 (98)
T ss_dssp ----CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSC-SCG------------GGEEEEETT-EEECTTCBGG
T ss_pred cCCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcC-CCh------------hhEEEEECC-EECcCcCCHH
Confidence 334578999999999998766 566999999999999 55432 332 567899999 6668999999
Q ss_pred hcCC-cCCC
Q 048546 117 YYGI-RDGD 124 (125)
Q Consensus 117 dyGI-kdGd 124 (125)
+||| ++|+
T Consensus 80 dy~I~~~g~ 88 (98)
T 4a20_A 80 DLKVTPANS 88 (98)
T ss_dssp GSCCBTTBC
T ss_pred HcCcCCCCC
Confidence 9999 9987
No 30
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.41 E-value=1.2e-12 Score=94.16 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=62.5
Q ss_pred CCCCCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCC-CCCCCCcccccccccceEEeecCeeeccCcchhhh
Q 048546 39 NKLPEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHM-PKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKY 117 (125)
Q Consensus 39 ~~~~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~-~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~d 117 (125)
+..|...|.|+|+.++|+.+.++|+.++||++||+.|+...... .++.. |. -.+.+|+|+| |+++|+.+|++
T Consensus 10 ~~~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p--~p----~~qqrLIy~G-K~LeD~~TL~~ 82 (116)
T 1wgh_A 10 SHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQV--SS----PNILRLIYQG-RFLHGNVTLGA 82 (116)
T ss_dssp CCCCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCC--CC----TTTEEEEETT-EEECSSCBTTT
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCC--CC----hHHEEEEECC-cCCCCCCcHHH
Confidence 34577889999999999999999999999999999999954221 11100 00 1688999999 67799999999
Q ss_pred cCCcCCC
Q 048546 118 YGIRDGD 124 (125)
Q Consensus 118 yGIkdGd 124 (125)
|+|..|+
T Consensus 83 y~I~~~~ 89 (116)
T 1wgh_A 83 LKLPFGK 89 (116)
T ss_dssp TTCCSSC
T ss_pred cCCCCCC
Confidence 9998775
No 31
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.40 E-value=5.7e-13 Score=90.66 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=55.3
Q ss_pred CCCCCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhc
Q 048546 39 NKLPEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYY 118 (125)
Q Consensus 39 ~~~~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dy 118 (125)
|..+...|+|+|+. |+.+.++|+.++||.+||+.|++.....+ .+..|+|+| +.++|+++|.+|
T Consensus 13 ~~~~~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~qrLi~~G-k~L~D~~tL~~y 76 (93)
T 2l7r_A 13 GLVPRGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAP-------------EDQVVLLAG-APLEDEATLGQC 76 (93)
T ss_dssp -------CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCG-------------GGCEEEETT-EECCTTSBHHHH
T ss_pred CCCCCCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcCh-------------hHEEEEECC-EECCCCCcHHHC
Confidence 55666789999977 89999999999999999999999875433 455789999 555899999999
Q ss_pred CCcCCCC
Q 048546 119 GIRDGDQ 125 (125)
Q Consensus 119 GIkdGd~ 125 (125)
||++|+.
T Consensus 77 ~I~~gst 83 (93)
T 2l7r_A 77 GVEALTT 83 (93)
T ss_dssp TCCSSCE
T ss_pred CCCCCCE
Confidence 9999973
No 32
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.40 E-value=9.3e-13 Score=91.50 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=58.6
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
..|+|+|+..+|+.+.++|+.++||.+||+.|+......+ .+..|+|+| +.++|+.+|.+|||++|
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~qrLi~~G-k~L~D~~tL~~ygI~~g 87 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEP-------------GSQRWFFSG-RPLTDKMKFEELKIPKD 87 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCS-------------TTCEEEETT-EECCTTSHHHHCCCSSS
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCc-------------ccEEEEECC-EECCCCCcHHHcCCCCC
Confidence 4699999999999999999999999999999999764333 355689999 55689999999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
+.
T Consensus 88 ~t 89 (106)
T 1ttn_A 88 YV 89 (106)
T ss_dssp CE
T ss_pred CE
Confidence 73
No 33
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.39 E-value=9.8e-13 Score=90.11 Aligned_cols=69 Identities=22% Similarity=0.289 Sum_probs=60.2
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
+..|+|+|+..+|+.+.++|..+.||.+||++|+.+....+ .+..|+|+|+. ++|+.||++|||++
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~-------------~~qrLif~Gk~-L~d~~tl~dy~i~~ 84 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM-------------NSLRFLFEGQR-IADNHTPKELGMEE 84 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCG-------------GGEEEEETTEE-CCTTCCHHHHTCCT
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCh-------------hhEEEEECCeE-cCCCCCHHHCCCCC
Confidence 35699999999999999999999999999999999875333 57889999955 57899999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
||.
T Consensus 85 g~~ 87 (97)
T 1wyw_B 85 EDV 87 (97)
T ss_dssp TCE
T ss_pred CCE
Confidence 983
No 34
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.39 E-value=1.6e-12 Score=91.27 Aligned_cols=68 Identities=19% Similarity=0.360 Sum_probs=59.6
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
..|+|+|+..+|+.+.|.|+.++||.+||+.|++.....+ .+..|+|+| ++++|+.+|++|||++|
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~QrLi~~G-k~L~D~~tL~~~gI~~g 99 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQKE 99 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCG-------------GGEEEEETT-EECCTTSBTTTTTCCTT
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCh-------------HHEEEEECC-EECCCCCcHHHCCCCCC
Confidence 3699999999999999999999999999999999875443 466799999 56689999999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
+.
T Consensus 100 s~ 101 (111)
T 3vdz_A 100 ST 101 (111)
T ss_dssp CE
T ss_pred CE
Confidence 73
No 35
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=1.4e-12 Score=90.16 Aligned_cols=71 Identities=25% Similarity=0.488 Sum_probs=59.5
Q ss_pred CCCCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcC
Q 048546 40 KLPEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYG 119 (125)
Q Consensus 40 ~~~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyG 119 (125)
+.....|+|+|+..+|+ +.++|+.++||.+||+.|++.....+ .+..|+|+| ++++|+++|.+||
T Consensus 17 ~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~QrLi~~G-k~L~D~~tL~~yg 81 (100)
T 1yqb_A 17 RGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHP-------------DQLVLIFAG-KILKDPDSLAQCG 81 (100)
T ss_dssp SCCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCG-------------GGEEEEETT-EECCTTSBHHHHT
T ss_pred CCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcCh-------------hhEEEEECC-EECCCcCcHHHCC
Confidence 34456799999999886 79999999999999999999875433 466799999 5668999999999
Q ss_pred CcCCCC
Q 048546 120 IRDGDQ 125 (125)
Q Consensus 120 IkdGd~ 125 (125)
|++|+.
T Consensus 82 I~~gst 87 (100)
T 1yqb_A 82 VRDGLT 87 (100)
T ss_dssp CCTTCE
T ss_pred CCCCCE
Confidence 999973
No 36
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1e-12 Score=95.64 Aligned_cols=67 Identities=15% Similarity=0.235 Sum_probs=58.6
Q ss_pred CCeEEEEE-ccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 44 QPLKLSVR-KLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 44 ~aMkltV~-k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
..|+|.|+ ..+|+.+.|+|+.++||+|||++|+..+.. |. ++.||+|+| |+++|++||.+|||++
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~i-P~------------e~qrLIy~G-KiLKD~eTL~~~gIk~ 79 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGI-PH------------SVLQIRYSG-KILKNNETLVQHGVKP 79 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTC-CT------------TTEEEEETT-EEECSSCCHHHHSCCS
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCC-Ch------------HHEEEEECC-eEcCCcchHHHcCCCC
Confidence 45888886 777889999999999999999999999853 33 678999999 6779999999999999
Q ss_pred CC
Q 048546 123 GD 124 (125)
Q Consensus 123 Gd 124 (125)
|.
T Consensus 80 g~ 81 (118)
T 2daf_A 80 QE 81 (118)
T ss_dssp SC
T ss_pred CC
Confidence 86
No 37
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=6.2e-13 Score=90.01 Aligned_cols=67 Identities=16% Similarity=0.424 Sum_probs=57.0
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
...|+|+|+.. |+.+.++|+.++||.+||+.|++.....+ .+..|+|.| ++++|+++|.+|||++
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~-------------~~qrL~~~G-k~L~D~~tL~~~gi~~ 79 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNA-------------DRLVLIFTG-KILRDQDILSQRGILD 79 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCT-------------TTBCCEETT-EECCTTSCHHHHTCCT
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCH-------------HHEEEEECC-EECCCcCCHHHCCCCC
Confidence 35699999888 99999999999999999999999875333 344588999 5568999999999999
Q ss_pred CC
Q 048546 123 GD 124 (125)
Q Consensus 123 Gd 124 (125)
|+
T Consensus 80 g~ 81 (96)
T 1wx8_A 80 GS 81 (96)
T ss_dssp TE
T ss_pred CC
Confidence 86
No 38
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=7.6e-13 Score=93.37 Aligned_cols=64 Identities=16% Similarity=0.082 Sum_probs=55.7
Q ss_pred EEEEEccC----CcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 47 KLSVRKLD----GSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 47 kltV~k~~----g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
+|.|+..+ ++.++|+|+.++||.+||+.|+.++...+ .|.+|||+| |+++|++||++|||++
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~-------------~qQrLI~~G-KiL~D~~TL~~y~I~~ 82 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQE-------------NYIKIVINK-KQLQLGKTLEEQGVAH 82 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCS-------------TTCEEEETT-EECCTTSBHHHHTCCS
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCH-------------HHeEEEeCC-eECCCCCcHHHcCCCC
Confidence 67777777 77899999999999999999999985433 567899999 7779999999999999
Q ss_pred CC
Q 048546 123 GD 124 (125)
Q Consensus 123 Gd 124 (125)
|+
T Consensus 83 gs 84 (100)
T 1wju_A 83 NV 84 (100)
T ss_dssp SE
T ss_pred CC
Confidence 86
No 39
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.38 E-value=2.4e-12 Score=88.99 Aligned_cols=67 Identities=18% Similarity=0.410 Sum_probs=57.9
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
..|+|+|+.. |+.+.|+|+.++||++||+.|+......+ .+..|+|+| ++++|+++|.+|||++|
T Consensus 24 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~qrLi~~G-k~L~D~~tL~~~gI~~g 88 (101)
T 2klc_A 24 KIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHT-------------DQLVLIFAG-KILKDQDTLSQHGIHDG 88 (101)
T ss_dssp CCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCG-------------GGEEEEETT-EEECTTCCTGGGTCCTT
T ss_pred CeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcCh-------------hhEEEEECC-EECCCcCcHHHcCCCCC
Confidence 5799999888 88999999999999999999999875433 466789999 55589999999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
+.
T Consensus 89 ~~ 90 (101)
T 2klc_A 89 LT 90 (101)
T ss_dssp CE
T ss_pred CE
Confidence 73
No 40
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.37 E-value=3e-12 Score=89.55 Aligned_cols=68 Identities=19% Similarity=0.360 Sum_probs=59.3
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
..|+|+|+..+|+.+.++|+.++||++||++|++.....+ .+..|+|+| +.++|+++|++|||++|
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~qrLi~~G-k~L~D~~tL~~~gI~~g 99 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQKE 99 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCT-------------TTEEEEETT-EECCSSCBTTTTTCCTT
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCc-------------ccEEEEECC-EECCCCCcHHHcCCCCC
Confidence 5799999999999999999999999999999999875433 456789999 55588999999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
+.
T Consensus 100 s~ 101 (111)
T 2ojr_A 100 ST 101 (111)
T ss_dssp CE
T ss_pred CE
Confidence 73
No 41
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.06 E-value=4.8e-14 Score=90.96 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=56.6
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+|+..+|+.+.++|+.++||++||+.|++.....+ .+..|+|+| +.++|+++|++|||++|+.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~-------------~~qrL~~~g-k~L~d~~tL~~~~i~~g~~ 66 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPA-------------DQLRVIFAG-KELPNHLTVQNCDLEQQSI 66 (76)
Confidence 88999999999999999999999999999999764333 345689999 5558899999999999974
No 42
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=1.4e-12 Score=88.21 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=56.2
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCc-chhhhcCCc
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICEN-DNIKYYGIR 121 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~-~tL~dyGIk 121 (125)
...|+|+|+..+|+.+.++|+.++||.+||+.|+... + .+..|+|.|+ .++|+ .+|.+|||+
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~-------------~~qrLi~~Gk-~L~D~~~tL~~y~i~ 67 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---E-------------SQMKLIYQGR-LLQDPARTLSSLNIT 67 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---T-------------TTCEEEETTE-ECCCSSCBTTTTTCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---c-------------CcEEEEECCE-EccCCcCCHHHcCCC
Confidence 3579999999999999999999999999999999864 2 4567999995 55666 999999999
Q ss_pred CCC
Q 048546 122 DGD 124 (125)
Q Consensus 122 dGd 124 (125)
+|+
T Consensus 68 ~g~ 70 (95)
T 1wia_A 68 NNC 70 (95)
T ss_dssp TTE
T ss_pred CCC
Confidence 986
No 43
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=1.9e-12 Score=87.43 Aligned_cols=70 Identities=11% Similarity=0.199 Sum_probs=56.6
Q ss_pred CCCCeEEEEEccCCc--EEEEEeCCCCcHHHHHHHHHHHhc-CCCCCCCCcccccccccceEEeecCeeeccCcchhhhc
Q 048546 42 PEQPLKLSVRKLDGS--CFDIEVMKTATIAELRQAVEAAFS-HMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYY 118 (125)
Q Consensus 42 ~~~aMkltV~k~~g~--~~~V~V~~~ATV~dLK~aI~~~~~-~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dy 118 (125)
+...|+|+|+..+|+ .+.|+|+.++||.+||+.|++... ..+. .+..|+|+| ++++|+.+|++|
T Consensus 4 ~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~------------~~QrLi~~G-k~L~D~~tL~~~ 70 (93)
T 1wgd_A 4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRP------------EDQRLIYSG-KLLLDHQCLRDL 70 (93)
T ss_dssp CSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCT------------TTCEEEETT-EECCSSSCHHHH
T ss_pred CCcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCCh------------HHeEEEECC-EECcCcCCHHHH
Confidence 345799999999998 567777799999999999999862 2222 455699999 666889999999
Q ss_pred --CCcCCC
Q 048546 119 --GIRDGD 124 (125)
Q Consensus 119 --GIkdGd 124 (125)
||++|+
T Consensus 71 ~~~i~~~~ 78 (93)
T 1wgd_A 71 LPKQEKRH 78 (93)
T ss_dssp SCSSSCSE
T ss_pred hcCCCCCC
Confidence 999985
No 44
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.37 E-value=3e-12 Score=93.12 Aligned_cols=69 Identities=28% Similarity=0.382 Sum_probs=60.8
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
...|+|+|+..+|+.+.++|+.++||++||+.|+......+ .+.+|+|+| +.++|+.+|.+|||++
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~-------------~~q~L~~~G-~~L~d~~tL~~y~i~~ 144 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQD-------------DLFWLTFEG-KPLEDQLPLGEYGLKP 144 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCG-------------GGEEEEETT-EECCTTSBGGGGTCCT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCH-------------HHEEEEECC-eecCCCCCHHHcCCCC
Confidence 46799999999999999999999999999999999875433 577899999 6668999999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
|+.
T Consensus 145 g~~ 147 (159)
T 3rt3_B 145 LST 147 (159)
T ss_dssp TCE
T ss_pred CCE
Confidence 973
No 45
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.36 E-value=7.3e-13 Score=90.53 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=54.0
Q ss_pred eEEEEEccCCcEEEEEeC--CCCcHHHHHHHH-HHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCC-c
Q 048546 46 LKLSVRKLDGSCFDIEVM--KTATIAELRQAV-EAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGI-R 121 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~--~~ATV~dLK~aI-~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGI-k 121 (125)
|+|+|+..+|+.|.|+|+ .++||.+||+.| +.... .|. .+..|+|+| |+++|+.+|++||| .
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~g-ip~------------~~QrLi~~G-k~L~D~~tL~~y~I~~ 67 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKA-SHI------------SEIKLLLKG-KVLHDNLFLSDLKVTP 67 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSC-SSS------------TTEEEEETT-EECCTTCBHHHHCCCG
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcC-CCh------------HHEEEEECC-EECcCcCCHHHcCCCC
Confidence 899999999998877655 999999999999 76543 332 567899999 66789999999999 5
Q ss_pred CCC
Q 048546 122 DGD 124 (125)
Q Consensus 122 dGd 124 (125)
+|.
T Consensus 68 ~~s 70 (87)
T 2lxa_A 68 ANS 70 (87)
T ss_dssp GGC
T ss_pred CCC
Confidence 764
No 46
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.34 E-value=2.5e-12 Score=93.52 Aligned_cols=74 Identities=12% Similarity=0.154 Sum_probs=59.2
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCC-CCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHM-PKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~-~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
..|.|+|+..+|+.++++|++++||++||+.|+...... .++-+ ++ ..+..|+|+| |+++|++||++|||.+
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip--~~----~~~qrLIy~G-K~LeD~~TL~~y~I~~ 88 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQV--SS----PNILRLIYQG-RFLHGNVTLGALKLPF 88 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTT--CC----GGGEEEESSS-SEEESSCBTGGGCCCT
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCC--CC----hHHEEEEECC-cCCCCCCcHHHcCCCC
Confidence 469999999999999999999999999999999854321 11100 00 2788999999 6668999999999998
Q ss_pred CC
Q 048546 123 GD 124 (125)
Q Consensus 123 Gd 124 (125)
|+
T Consensus 89 ~~ 90 (125)
T 2gow_A 89 GK 90 (125)
T ss_dssp TS
T ss_pred CC
Confidence 76
No 47
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.34 E-value=3.3e-12 Score=88.44 Aligned_cols=66 Identities=27% Similarity=0.534 Sum_probs=56.7
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
..|+|+|+..+|+ +.|+|+.++||.+||+.|++.....+ .+..|+|+| ++++|+++|.+|||++|
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~qrLi~~G-k~L~D~~tL~~~gi~~g 80 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHP-------------DQLVLIFAG-KILKDPDSLAQCGVRDG 80 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCT-------------TTEEEEETT-EECCTTSCHHHHTCCTT
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcCh-------------hhEEEEECC-EECCCcCcHHHcCCCCC
Confidence 4599999998886 79999999999999999999875433 456789999 56689999999999998
Q ss_pred C
Q 048546 124 D 124 (125)
Q Consensus 124 d 124 (125)
+
T Consensus 81 ~ 81 (106)
T 1wx7_A 81 L 81 (106)
T ss_dssp E
T ss_pred C
Confidence 6
No 48
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.34 E-value=4e-12 Score=87.72 Aligned_cols=68 Identities=19% Similarity=0.280 Sum_probs=55.5
Q ss_pred CCeEEEEEccCC----cEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcC
Q 048546 44 QPLKLSVRKLDG----SCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYG 119 (125)
Q Consensus 44 ~aMkltV~k~~g----~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyG 119 (125)
..|+|+|+...+ +.+.|+|+.++||+|||+.|+......+ .+..|+|.|+.|.+|.++|.+||
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~-------------~~qrL~~~gk~L~D~~~tL~~yg 72 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPA-------------EEAQIVYMEQLLTDDHCSLGSYG 72 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCG-------------GGBCEEETTEEECCSSSBHHHHT
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcCh-------------HHeEEEECCEECCCCcccHHHCC
Confidence 469999988654 6899999999999999999999875433 45568999966544447999999
Q ss_pred CcCCC
Q 048546 120 IRDGD 124 (125)
Q Consensus 120 IkdGd 124 (125)
|++|+
T Consensus 73 I~~g~ 77 (102)
T 1v5o_A 73 LKDGD 77 (102)
T ss_dssp CCTTE
T ss_pred CCCCC
Confidence 99986
No 49
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.34 E-value=5.1e-12 Score=86.49 Aligned_cols=66 Identities=21% Similarity=0.377 Sum_probs=56.4
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCc-chhhhcCCcC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICEN-DNIKYYGIRD 122 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~-~tL~dyGIkd 122 (125)
..|+|+|+...| .+.|+|+.++||.+||+.|+......+ .+..|+|.| +.++|+ .+|.+|||++
T Consensus 14 ~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~QrLi~~G-k~L~D~~~tL~~ygI~~ 78 (94)
T 2kan_A 14 RKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPI-------------KRMQLYYSG-IELADDYRNLNEYGITE 78 (94)
T ss_dssp CCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCT-------------TTEEEEETT-EEECCTTSBHHHHTCCT
T ss_pred CCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCH-------------HHEEEEECC-EECCCCcccHHHCCCCC
Confidence 569999999887 899999999999999999999865433 466789999 555777 9999999999
Q ss_pred CC
Q 048546 123 GD 124 (125)
Q Consensus 123 Gd 124 (125)
|+
T Consensus 79 gs 80 (94)
T 2kan_A 79 FS 80 (94)
T ss_dssp TE
T ss_pred CC
Confidence 86
No 50
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=8e-12 Score=89.92 Aligned_cols=66 Identities=20% Similarity=0.419 Sum_probs=57.6
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
..|+|+|+.. |+.+.|+|+.+.||.+||+.|+......+ .+..|+|.| ++++|+.+|.+|||++|
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~QrLi~~G-k~L~D~~tL~dygI~~g 95 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQT-------------DQLVLIFAG-KILKDQDTLIQHGIHDG 95 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCS-------------SSEEEEETT-EEESTTSCGGGTTCSSS
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCc-------------ceEEEEECC-EEcCCCCCHHHcCCCCC
Confidence 5799999988 99999999999999999999999875433 456799999 55588999999999998
Q ss_pred C
Q 048546 124 D 124 (125)
Q Consensus 124 d 124 (125)
+
T Consensus 96 s 96 (125)
T 1j8c_A 96 L 96 (125)
T ss_dssp E
T ss_pred C
Confidence 6
No 51
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.31 E-value=6.3e-12 Score=89.45 Aligned_cols=66 Identities=20% Similarity=0.378 Sum_probs=57.9
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+|+..+|+.+.++|+.++||+|||++|++.....+ .+..|+|.| +.++|+.+|++|||++|+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~-------------~~q~L~~~g-~~L~d~~tL~~~~i~~~~~ 66 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQKEST 66 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCG-------------GGEEEEETT-EECCTTSBTGGGTCCTTCE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcCh-------------HHeEEEECC-eECcCcccHHHhccCCCCe
Confidence 89999999999999999999999999999999875433 466799999 5558999999999999973
No 52
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.30 E-value=9e-12 Score=92.10 Aligned_cols=70 Identities=19% Similarity=0.344 Sum_probs=59.9
Q ss_pred CCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCc
Q 048546 42 PEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIR 121 (125)
Q Consensus 42 ~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIk 121 (125)
+...|+|+|+..+|+.+.|+|+.++||.+||+.|+......+ .+..|+|+| +.++|+.+|++|||+
T Consensus 17 ~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~-------------~~QrL~~~g-~~L~d~~tL~~~~i~ 82 (172)
T 3u30_A 17 RGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQ 82 (172)
T ss_dssp --CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCG-------------GGEEEEETT-EECCTTCBTGGGTCC
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh-------------HHEEEEECC-ccccccCCHhHcCCc
Confidence 346799999999999999999999999999999999875443 456799999 566899999999999
Q ss_pred CCCC
Q 048546 122 DGDQ 125 (125)
Q Consensus 122 dGd~ 125 (125)
+|+.
T Consensus 83 ~~~~ 86 (172)
T 3u30_A 83 KEST 86 (172)
T ss_dssp TTCE
T ss_pred ccce
Confidence 9873
No 53
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.30 E-value=9.6e-12 Score=93.44 Aligned_cols=66 Identities=20% Similarity=0.382 Sum_probs=58.2
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+|+..+|+.+.++|+.++||.+||+.|++.....+ .+..|+|+| +.++|+.+|.+|||++|+.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~QrLi~~G-k~L~D~~tL~~y~I~~gst 66 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQKEST 66 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCT-------------TTEEEEETT-EECCTTSBGGGGTCCTTCE
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCH-------------HHEEEEECC-ccccCcCcHHHcCCCCCCE
Confidence 89999999999999999999999999999999875444 456799999 5568999999999999973
No 54
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.29 E-value=8.1e-12 Score=87.12 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=55.8
Q ss_pred CCCeEEEEEccCCc--EEEEEeCCCCcHHHHHHHHHHHhc-CCCCCCCCcccccccccceEEeecCeeeccCcchhhhc-
Q 048546 43 EQPLKLSVRKLDGS--CFDIEVMKTATIAELRQAVEAAFS-HMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYY- 118 (125)
Q Consensus 43 ~~aMkltV~k~~g~--~~~V~V~~~ATV~dLK~aI~~~~~-~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dy- 118 (125)
...|+|+|+..+|+ .+.|+|+.++||++||+.|+.++. ..|. .+..|+|+| |+++|+.+|++|
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~------------~~QrLIy~G-k~L~D~~tL~~y~ 87 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLT------------KDQRLVYSG-RLLPDHLQLKDIL 87 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCT------------TTCCEEETT-EEECTTSBTHHHH
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCCh------------hhEEEEECC-EECCCCCCHHHHh
Confidence 35699999999998 568888999999999999999763 2222 344699999 666899999999
Q ss_pred -CCcCCC
Q 048546 119 -GIRDGD 124 (125)
Q Consensus 119 -GIkdGd 124 (125)
||++|+
T Consensus 88 ~~I~~~~ 94 (99)
T 2kdb_A 88 RKQDEYH 94 (99)
T ss_dssp TTTCSEE
T ss_pred cCCCCCC
Confidence 999885
No 55
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.29 E-value=5.6e-12 Score=85.24 Aligned_cols=66 Identities=15% Similarity=0.256 Sum_probs=55.9
Q ss_pred CCeEEEEEccCCcEEEE-EeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEe---ecCeeeccCcchhhhcC
Q 048546 44 QPLKLSVRKLDGSCFDI-EVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLC---YNGQKLICENDNIKYYG 119 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V-~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~---~~g~KLl~D~~tL~dyG 119 (125)
..|+|+|+ ..|+.+.| +|+.++||.|||+.|++.....+ .+..|+ |+| +.++|+.+|++||
T Consensus 6 ~~m~i~Vk-~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~-------------~~QkLi~~k~~G-k~L~D~~~L~~~~ 70 (90)
T 1v5t_A 6 SGLPIIVK-WGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLP-------------ERQKLLGLKVKG-KPAENDVKLGALK 70 (90)
T ss_dssp CSCCEEEE-ETTEEEEECSCCSSSBHHHHHHHHHHHTCCCT-------------TTCEEESCEETT-EECCTTSBHHHHT
T ss_pred ceEEEEEE-ECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCH-------------HHeEEEeeccCC-cCcCCCCCHHHcC
Confidence 46999996 57899999 99999999999999999875444 344578 999 6668999999999
Q ss_pred CcCCC
Q 048546 120 IRDGD 124 (125)
Q Consensus 120 IkdGd 124 (125)
|++|+
T Consensus 71 i~~g~ 75 (90)
T 1v5t_A 71 LKPNT 75 (90)
T ss_dssp CCTTE
T ss_pred CCCCC
Confidence 99986
No 56
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.5e-11 Score=86.82 Aligned_cols=68 Identities=18% Similarity=0.336 Sum_probs=59.8
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
....+|.|+..+|+.+.++|+.++||.+||+.|+......+ .+..|+|+| +.++|+.+|++|||++
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~qrLi~~G-k~L~D~~tL~~ygI~~ 72 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-------------DQQRLIWAG-KQLEDGRTLSDYNIQR 72 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCG-------------GGEEEEETT-EECCTTCBTTTTTCCS
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcCh-------------HHEEEEECC-EECCCCCcHHHCCCCC
Confidence 36789999999999999999999999999999999875443 466799999 5558999999999999
Q ss_pred CC
Q 048546 123 GD 124 (125)
Q Consensus 123 Gd 124 (125)
|+
T Consensus 73 gs 74 (114)
T 2kdi_A 73 ES 74 (114)
T ss_dssp SC
T ss_pred CC
Confidence 97
No 57
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.28 E-value=2.2e-11 Score=86.65 Aligned_cols=69 Identities=19% Similarity=0.351 Sum_probs=59.7
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
...|+|+|+..+|+.+.++|+.++||++||+.|+......+ .+..|+|.| +.++|+++|++|||++
T Consensus 74 ~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~-------------~~qrL~~~g-~~L~d~~tL~~~~i~~ 139 (152)
T 3b08_A 74 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQK 139 (152)
T ss_dssp TTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCG-------------GGEEEEETT-EECCTTSBTGGGTCCT
T ss_pred ccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcCh-------------hhEEEEECC-EECCCCCCHHHcCCCC
Confidence 35699999999999999999999999999999999864333 567899999 5558999999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
|+.
T Consensus 140 ~~~ 142 (152)
T 3b08_A 140 EST 142 (152)
T ss_dssp TCE
T ss_pred CCE
Confidence 973
No 58
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=1.9e-11 Score=82.19 Aligned_cols=67 Identities=22% Similarity=0.322 Sum_probs=54.5
Q ss_pred CCeEEEEEccCCcEEEEEeCCC-----CcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhc
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKT-----ATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYY 118 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~-----ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dy 118 (125)
..|+|+|+. .|+.+.|+|+.+ +||.|||+.|+......+ .+..|+|.|+.|.+|+.+|.+|
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~-------------~~qrL~~~Gk~L~D~~~~L~~~ 71 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQ-------------SFQKLIFKGKSLKEMETPLSAL 71 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCT-------------TTCEEEETTEEECCSSSBHHHH
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCH-------------HHEEEEECCeecCCCcccHHHC
Confidence 469999976 588899999985 999999999999875333 3456899996664447789999
Q ss_pred CCcCCC
Q 048546 119 GIRDGD 124 (125)
Q Consensus 119 GIkdGd 124 (125)
||++|+
T Consensus 72 ~i~~g~ 77 (92)
T 1wxv_A 72 GIQDGC 77 (92)
T ss_dssp TCCSSE
T ss_pred CCCCCC
Confidence 999986
No 59
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.27 E-value=2.2e-12 Score=89.51 Aligned_cols=66 Identities=20% Similarity=0.441 Sum_probs=54.8
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
-.|+|+|+. +|+.+.|+|+.++||++||+.|++.....+. +..|+|+| +.++|+.+|++|||++|
T Consensus 27 m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~-------------~QrLi~~G-k~L~D~~tL~~~gI~~g 91 (101)
T 3m63_B 27 MSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVA-------------NQRLIYSG-KILKDDQTVESYHIQDG 91 (101)
T ss_dssp --CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCST-------------TCCEEETT-EECCTTSBTTTTTCCTT
T ss_pred cEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChH-------------HEEEEECC-EECCCcCcHHHCCCCCC
Confidence 457888976 8999999999999999999999998754432 33589999 66689999999999999
Q ss_pred C
Q 048546 124 D 124 (125)
Q Consensus 124 d 124 (125)
+
T Consensus 92 ~ 92 (101)
T 3m63_B 92 H 92 (101)
T ss_dssp E
T ss_pred C
Confidence 6
No 60
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.27 E-value=1.1e-11 Score=86.33 Aligned_cols=69 Identities=20% Similarity=0.331 Sum_probs=56.7
Q ss_pred CCCCeEEEEEccCC---cEEEEEeCC---------CCcHHHHHHHHHHHh--cCCCCCCCCcccccccccc-eEEeecCe
Q 048546 42 PEQPLKLSVRKLDG---SCFDIEVMK---------TATIAELRQAVEAAF--SHMPKTGPGKISWPHVWGH-FCLCYNGQ 106 (125)
Q Consensus 42 ~~~aMkltV~k~~g---~~~~V~V~~---------~ATV~dLK~aI~~~~--~~~~~~g~~~IsW~~VW~q-~~L~~~g~ 106 (125)
....|+|+|+..++ ..+.|+|+. ++||.+||+.|+... ...+ .+ ..|+|.|
T Consensus 9 ~~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~-------------~~~qrLi~~G- 74 (107)
T 1x1m_A 9 SLSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPD-------------PELIDLIYCG- 74 (107)
T ss_dssp CCCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCC-------------SSSEEEEETT-
T ss_pred cCCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCCh-------------hhcEEEEECC-
Confidence 34569999999988 789999655 599999999999986 3333 45 6799999
Q ss_pred eeccCcchhhhcCCcCCC
Q 048546 107 KLICENDNIKYYGIRDGD 124 (125)
Q Consensus 107 KLl~D~~tL~dyGIkdGd 124 (125)
+.++|+.+|.+|||++|+
T Consensus 75 k~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 75 RKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp EECCTTCBHHHHTCCTTC
T ss_pred eECCCCCcHHHcCCCCCC
Confidence 555889999999999997
No 61
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.27 E-value=1.2e-11 Score=86.39 Aligned_cols=68 Identities=18% Similarity=0.334 Sum_probs=58.3
Q ss_pred CCeEEEEEcc---CCcEEEEEeCC-CCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcC
Q 048546 44 QPLKLSVRKL---DGSCFDIEVMK-TATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYG 119 (125)
Q Consensus 44 ~aMkltV~k~---~g~~~~V~V~~-~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyG 119 (125)
..|+|+|+.. +|+.+.++|+. ++||.+||+.|+......+ .+..|+|+| ++++|+.+|.+||
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~-------------~~QrL~~~G-k~L~D~~tL~~y~ 91 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPA-------------NKQKLSGKA-GFLKDNMSLAHYN 91 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCT-------------TTSEEECSS-SBCCTTSBTTTTT
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCH-------------HHeEEEECC-EECCCCCcHHHCC
Confidence 5799999887 88999999998 9999999999999875433 345689999 6778999999999
Q ss_pred CcCCCC
Q 048546 120 IRDGDQ 125 (125)
Q Consensus 120 IkdGd~ 125 (125)
|++|+.
T Consensus 92 I~~g~~ 97 (111)
T 1we6_A 92 VGAGEI 97 (111)
T ss_dssp CSSSCE
T ss_pred CCCCCE
Confidence 999973
No 62
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=4.7e-12 Score=86.19 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=53.0
Q ss_pred CeEEEEEccCCcEE--EE-EeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeec--CeeeccCcchhhhcC
Q 048546 45 PLKLSVRKLDGSCF--DI-EVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYN--GQKLICENDNIKYYG 119 (125)
Q Consensus 45 aMkltV~k~~g~~~--~V-~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~--g~KLl~D~~tL~dyG 119 (125)
.|+|+|+.+.|+.+ .| +|++++||++||++|++.....+. .+..|+|. | |.++|+++|++||
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~------------~~QrL~~~~~G-k~L~D~~tL~~y~ 76 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYP------------ARQSLRLDPKG-KSLKDEDVLQKLP 76 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCT------------TTCCEESSTTS-CCCCTTCBTTTSS
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCCh------------HHeEEEecCCC-cCcCCCCCHHHcC
Confidence 39999999998875 58 899999999999999996432222 22346654 8 6678999999999
Q ss_pred CcCCC
Q 048546 120 IRDGD 124 (125)
Q Consensus 120 IkdGd 124 (125)
|++|+
T Consensus 77 i~~~s 81 (88)
T 2dzj_A 77 VGTTA 81 (88)
T ss_dssp CCSEE
T ss_pred CCCCC
Confidence 99986
No 63
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.27 E-value=1.4e-11 Score=89.49 Aligned_cols=66 Identities=17% Similarity=0.288 Sum_probs=56.9
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEe-e-cCeeeccCcchhhhcCCcC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLC-Y-NGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~-~-~g~KLl~D~~tL~dyGIkd 122 (125)
.|+|+|+..+|+.+.++|+.++||++||+.|+......+ .+..|+ | +| +.++|+.+|++|||++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~-------------~~QrL~~~~~g-~~L~d~~tL~~y~i~~ 67 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHA-------------FQQRLAVHPSG-VALQDRVPLASQGLGP 67 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCG-------------GGEEEEEETTC-CBCCTTSCGGGGTCCT
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCH-------------HHEEEEEcCCC-CCCCCCCCHHHcCCCC
Confidence 489999999999999999999999999999999986444 345577 9 79 5559999999999999
Q ss_pred CC
Q 048546 123 GD 124 (125)
Q Consensus 123 Gd 124 (125)
|+
T Consensus 68 ~~ 69 (159)
T 3rt3_B 68 GS 69 (159)
T ss_dssp TC
T ss_pred CC
Confidence 87
No 64
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.27 E-value=2.1e-11 Score=81.80 Aligned_cols=65 Identities=22% Similarity=0.422 Sum_probs=53.9
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
.+.+ +++.+|+.+.|+|+.++||++||+.|++.....+ .+..|+|+| +.++|+++|++|||++|+
T Consensus 12 ~~~~-~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~qrL~~~G-k~L~D~~tL~~~gi~~g~ 76 (85)
T 2kd0_A 12 TIKL-TVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLP-------------RGQKLIFKG-KVLVETSTLKQSDVGSGA 76 (85)
T ss_dssp CEEE-EEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCT-------------TTCEEEETT-EECCTTCBTTTTTCCTTE
T ss_pred cEEE-EEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCh-------------HHEEEEECC-eECCCcCCHHHCCCCCCC
Confidence 4554 4588999999999999999999999999875444 344688999 566899999999999986
No 65
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.25 E-value=1.3e-11 Score=84.85 Aligned_cols=65 Identities=11% Similarity=0.160 Sum_probs=53.9
Q ss_pred CCeEEEEEccCCcEE-EEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 44 QPLKLSVRKLDGSCF-DIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 44 ~aMkltV~k~~g~~~-~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
..|+|+|+ ..|+.+ .|+|+.++||.|||+.|++.....+ .+..|+|.| ++++|+ +|++|||++
T Consensus 6 ~~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~-------------~~QkLi~~G-k~L~D~-tL~~~~I~~ 69 (96)
T 1wgg_A 6 SGYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQP-------------ARQKVMVKG-GTLKDD-DWGNIKMKN 69 (96)
T ss_dssp CEEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCT-------------TTSCCEETT-EECCSS-CCCSCCCCS
T ss_pred cEEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCH-------------HHeEEEECC-cCCCCC-CHHHCCCCC
Confidence 46999996 578999 6999999999999999999875443 233477999 556777 999999999
Q ss_pred CC
Q 048546 123 GD 124 (125)
Q Consensus 123 Gd 124 (125)
|+
T Consensus 70 g~ 71 (96)
T 1wgg_A 70 GM 71 (96)
T ss_dssp SC
T ss_pred CC
Confidence 97
No 66
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.24 E-value=1.5e-11 Score=84.18 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=54.0
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
...|+|+|+ ..|+.+.|+|+.++||.|||+.|+......++ +..|+|.|+ +++| .+|.+|||++
T Consensus 15 ~~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~-------------~QrL~~~Gk-~Ldd-~tL~~~~i~~ 78 (95)
T 1v86_A 15 KELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPA-------------MQKVMYKGL-VPED-KTLREIKVTS 78 (95)
T ss_dssp CCCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCST-------------TCCCBSSSB-CCSS-SBHHHHCCCT
T ss_pred CceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHH-------------HeEEEECCe-eCCc-CcHHHCCCCC
Confidence 456999996 67999999999999999999999999764442 334779995 4555 4999999999
Q ss_pred CC
Q 048546 123 GD 124 (125)
Q Consensus 123 Gd 124 (125)
|+
T Consensus 79 g~ 80 (95)
T 1v86_A 79 GA 80 (95)
T ss_dssp TE
T ss_pred CC
Confidence 86
No 67
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.23 E-value=7.7e-13 Score=94.81 Aligned_cols=66 Identities=20% Similarity=0.382 Sum_probs=0.0
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+|+..+|+.+.|+|+.++||++||+.|++.....+ .+..|+|+| +.++|+.+|++|||++|+.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~QrLi~~G-k~L~D~~tL~~~~I~~gst 66 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQKEST 66 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcCh-------------HHEEEEECC-EECCCCCchhhhccCCCCE
Confidence 78999999999999999999999999999999765433 344688999 5568999999999999974
No 68
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.22 E-value=8.6e-11 Score=85.94 Aligned_cols=74 Identities=20% Similarity=0.299 Sum_probs=59.3
Q ss_pred CCeEEEEEccCCcEE-EEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 44 QPLKLSVRKLDGSCF-DIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 44 ~aMkltV~k~~g~~~-~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
..|.|+|+..+|+.+ +++|+++.||++||+.|+.......++.+ + -..+..|||+| |+++|+.||++|+|.+
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP----~--~~~qQrLIy~G-K~LeD~~TLsdy~I~~ 87 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGP----K--TVKEVKLISAG-KVLENSKTVKDYRSPV 87 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSC----C--SGGGEEEEETT-EECCTTSBGGGGSCCT
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCC----C--ChhhEEEEECC-eECcCCCcHHHcCCCc
Confidence 679999999999998 79999999999999999875432211110 0 01578899999 7779999999999999
Q ss_pred CC
Q 048546 123 GD 124 (125)
Q Consensus 123 Gd 124 (125)
|+
T Consensus 88 ~~ 89 (126)
T 1se9_A 88 SN 89 (126)
T ss_dssp TS
T ss_pred CC
Confidence 85
No 69
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.22 E-value=3.8e-11 Score=85.37 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=57.2
Q ss_pred CCCCCC--CeEEEEEccCC--cEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcch
Q 048546 39 NKLPEQ--PLKLSVRKLDG--SCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDN 114 (125)
Q Consensus 39 ~~~~~~--aMkltV~k~~g--~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~t 114 (125)
.-+|.+ .|+|+|....+ ..+.|+|++++||++||+.|+.++...++ .|. ++|+| ++++|+.|
T Consensus 16 ~~~~~~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~------------~QR-li~gg-kll~D~~T 81 (105)
T 4dbg_A 16 EVSPTQDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPV------------LQQ-WVIGQ-RLARDQET 81 (105)
T ss_dssp ----CCCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGG------------GEE-EEETT-EEECTTCB
T ss_pred CcCCCCcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHH------------HEE-EeccC-eEccCcCc
Confidence 344544 47888888875 67899999999999999999999876663 344 88888 68899999
Q ss_pred hhhcCCc-CCCC
Q 048546 115 IKYYGIR-DGDQ 125 (125)
Q Consensus 115 L~dyGIk-dGd~ 125 (125)
|.+|||+ +|++
T Consensus 82 L~~ygI~~~G~t 93 (105)
T 4dbg_A 82 LHSHGVRQNGDS 93 (105)
T ss_dssp TGGGTCCSTTCE
T ss_pred HHHcCCCCCCCE
Confidence 9999995 8873
No 70
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.21 E-value=3.4e-11 Score=92.81 Aligned_cols=74 Identities=19% Similarity=0.322 Sum_probs=61.6
Q ss_pred cCCCCCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhh
Q 048546 38 YNKLPEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKY 117 (125)
Q Consensus 38 ~~~~~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~d 117 (125)
|---.+-.|+|+|+..+|+.+.|+|+.++||.+||+.|+......+ .+..|+|+| ++++|+.+|++
T Consensus 98 y~T~d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~-------------~~QrLi~~G-k~L~D~~tL~d 163 (189)
T 3q3f_A 98 YKTTDHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSD 163 (189)
T ss_dssp EEESCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG-------------GGCCEEETT-EECCTTCBGGG
T ss_pred EEcccccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCH-------------HHEEEEECC-EECCCCCCHHH
Confidence 3333445699999999999999999999999999999999875433 345689999 56688999999
Q ss_pred cCCcCCCC
Q 048546 118 YGIRDGDQ 125 (125)
Q Consensus 118 yGIkdGd~ 125 (125)
|||++|+.
T Consensus 164 ygI~~gst 171 (189)
T 3q3f_A 164 YNIQKEST 171 (189)
T ss_dssp GTCCTTCE
T ss_pred CCCCCCCE
Confidence 99999973
No 71
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.19 E-value=3.2e-11 Score=84.24 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=56.2
Q ss_pred CCeEEEEEccCCcEEEEEeC-CCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCe-----------ee---
Q 048546 44 QPLKLSVRKLDGSCFDIEVM-KTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQ-----------KL--- 108 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~-~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~-----------KL--- 108 (125)
..|.|.|++.+|+. .|+|+ +++||.|||+.|+..+...+. +..|++.|+ .|
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~-------------~QrL~~~~~~~~~k~~~~~~~l~~~ 71 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIH-------------NQTLSTNRNLLLAKSPSDFLAFTDM 71 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTT-------------TCCCBSSGGGGTCCSHHHHTTCCSS
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcc-------------cCEEEECCccccccCcccccccccc
Confidence 35999999999977 79999 999999999999998764442 335778875 34
Q ss_pred ccCcchhhhcCCcCCCC
Q 048546 109 ICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 109 l~D~~tL~dyGIkdGd~ 125 (125)
++|+++|.+|||++|+.
T Consensus 72 l~d~~tL~~~gi~~G~~ 88 (107)
T 1wf9_A 72 ADPNLRISSLNLAHGSM 88 (107)
T ss_dssp CCTTCBGGGTCCCTTCE
T ss_pred CCCCCCHHHCCCCCCCE
Confidence 68999999999999983
No 72
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.17 E-value=9.5e-11 Score=86.59 Aligned_cols=68 Identities=19% Similarity=0.354 Sum_probs=59.2
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
..|.|.|+..+|+.+.+.|+.+.||.+||+.|+......+ ++.+|+|+| +.++|+.+|.+|||++|
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~-------------~~q~L~~~g-~~L~D~~tL~~y~i~~g 160 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQKE 160 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCG-------------GGCCEEETT-EECCTTSBSGGGTCCTT
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCc-------------eeEEEEECC-ccCCCCCcHHHhCCCCC
Confidence 5699999999999999999999999999999999875433 466799999 55689999999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
+.
T Consensus 161 ~t 162 (172)
T 3u30_A 161 ST 162 (172)
T ss_dssp CE
T ss_pred CE
Confidence 73
No 73
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.13 E-value=2.3e-10 Score=80.38 Aligned_cols=67 Identities=19% Similarity=0.394 Sum_probs=55.7
Q ss_pred CCeEEEEEcc----------CCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcc
Q 048546 44 QPLKLSVRKL----------DGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICEND 113 (125)
Q Consensus 44 ~aMkltV~k~----------~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~ 113 (125)
..|+|.|+.. +|+.+.++|+.++||.+||+.|+......+ .+..|+|.| +.++|+.
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~-------------~~QrL~~~G-k~L~D~~ 89 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPA-------------GKQKLQYEG-IFIKDSN 89 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCT-------------TTEEEEETT-EEECTTS
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCCh-------------HHEEEEECC-EECCCCC
Confidence 5788888764 477899999999999999999999865333 456799999 5558999
Q ss_pred hhhhcCCcCCC
Q 048546 114 NIKYYGIRDGD 124 (125)
Q Consensus 114 tL~dyGIkdGd 124 (125)
+|.+|||++|+
T Consensus 90 tL~~y~i~~g~ 100 (115)
T 1we7_A 90 SLAYYNMASGA 100 (115)
T ss_dssp BHHHHTCCSSC
T ss_pred CHHHCCCCCCC
Confidence 99999999987
No 74
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.11 E-value=7.1e-12 Score=93.51 Aligned_cols=66 Identities=20% Similarity=0.382 Sum_probs=0.0
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+|+..+|+.+.|+|+.++||.+||+.|++.....+ .+..|+|+| +.++|+.+|++|||++|+.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~-------------~~QrLi~~G-k~L~D~~tL~dygI~~gst 66 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQKEST 66 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCH-------------HHEEEEECC-EEccccCcHHHcCCCCCCE
Confidence 78999999999999999999999999999999865433 344688999 5568999999999999974
No 75
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.11 E-value=1.1e-10 Score=97.71 Aligned_cols=70 Identities=21% Similarity=0.413 Sum_probs=59.3
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhc--CCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFS--HMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGI 120 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~--~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGI 120 (125)
...|+|+|+.++|+.|.|+|+.+.||.+||+.|+..+. ..+. .+..|+|.| |+++|+++|.+|||
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~------------~~QrLiy~G-K~L~D~~tL~dygI 71 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPV------------AGQKLIYAG-KILSDDVPIRDYRI 71 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCS------------TEEEEESSS-SEECSSSBTTTTCC
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCCh------------hheEEEECC-eecCCcCCHHHcCC
Confidence 45799999999999999999999999999999999642 2222 577899999 56689999999999
Q ss_pred cCCCC
Q 048546 121 RDGDQ 125 (125)
Q Consensus 121 kdGd~ 125 (125)
++|+.
T Consensus 72 ~~gst 76 (368)
T 1oqy_A 72 DEKNF 76 (368)
T ss_dssp CTTSC
T ss_pred CCCCE
Confidence 99974
No 76
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.08 E-value=5.9e-10 Score=77.01 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=58.6
Q ss_pred CCCCCCeEEEEEccCCc--EEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeec--Ce---eeccCc
Q 048546 40 KLPEQPLKLSVRKLDGS--CFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYN--GQ---KLICEN 112 (125)
Q Consensus 40 ~~~~~aMkltV~k~~g~--~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~--g~---KLl~D~ 112 (125)
..+...++|.|+...++ .+++.|+.+.||++||+.|+....-.+ .+..|+|. |+ .|++|+
T Consensus 10 ~~~~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~-------------~~QrL~~~~~g~~~~~L~~D~ 76 (95)
T 2kjr_A 10 HGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCA-------------GTMKVQVFKGDTCVSTMDNND 76 (95)
T ss_dssp CCCCCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCT-------------TTEEEEEEETTEEEEECCCTT
T ss_pred cCCCCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCH-------------HHeEEEEecCCcccceeCCCC
Confidence 34556789999876664 789999999999999999999986444 45568887 54 367999
Q ss_pred chhhhcCCcCCCC
Q 048546 113 DNIKYYGIRDGDQ 125 (125)
Q Consensus 113 ~tL~dyGIkdGd~ 125 (125)
++|.+|||++|++
T Consensus 77 ~tL~~Y~i~~gst 89 (95)
T 2kjr_A 77 AQLGYYANSDGLR 89 (95)
T ss_dssp SBHHHHCCSSSCE
T ss_pred CCHhHCCcCCCCE
Confidence 9999999999973
No 77
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.06 E-value=5e-10 Score=92.01 Aligned_cols=70 Identities=19% Similarity=0.340 Sum_probs=60.2
Q ss_pred CCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCc
Q 048546 42 PEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIR 121 (125)
Q Consensus 42 ~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIk 121 (125)
....|+|+|+.++|+.+.|+|+.++||++||+.|++.....+ .+..|+|.| +.++|+++|++|||+
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~-------------~~QRLi~~G-k~L~D~~TLsdygI~ 295 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP-------------DQQRLIFAG-KQLEDGRTLSDYNIQ 295 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCG-------------GGCEEEETT-EECCTTSBTGGGTCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCh-------------HHEEEEeCC-eecCCCCCHHHcCCC
Confidence 346899999999999999999999999999999999875333 455799999 556899999999999
Q ss_pred CCCC
Q 048546 122 DGDQ 125 (125)
Q Consensus 122 dGd~ 125 (125)
+|+.
T Consensus 296 ~gst 299 (307)
T 3ai5_A 296 KEST 299 (307)
T ss_dssp TTCE
T ss_pred CCCE
Confidence 9973
No 78
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.05 E-value=1.6e-10 Score=77.32 Aligned_cols=66 Identities=15% Similarity=0.229 Sum_probs=51.2
Q ss_pred eEEEEEccCCcEEEEE-eCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeec--Ceeec--cCcchhhhcCC
Q 048546 46 LKLSVRKLDGSCFDIE-VMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYN--GQKLI--CENDNIKYYGI 120 (125)
Q Consensus 46 MkltV~k~~g~~~~V~-V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~--g~KLl--~D~~tL~dyGI 120 (125)
|+|.|+..+|+.. |. |+.++||.|||++|+++....+ .++.|+|+ ++.|. +|+++|++|||
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~-------------~~qrL~~~~p~k~l~l~~~~~tL~~~gl 66 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAP-------------GSQRILVGYPPECLDLSDRDITLGDLPI 66 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCT-------------TTCCCEESSCCCCCCCCCSSCBTTTSSC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCc-------------cceEEEeCCCCcccccCCCCCCHHHcCC
Confidence 7899999999764 88 8999999999999999875433 23345665 44442 37899999999
Q ss_pred cCCCC
Q 048546 121 RDGDQ 125 (125)
Q Consensus 121 kdGd~ 125 (125)
++|++
T Consensus 67 ~~g~~ 71 (86)
T 2kzr_A 67 QSGDM 71 (86)
T ss_dssp CTTCE
T ss_pred CCCCE
Confidence 99973
No 79
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.01 E-value=8e-10 Score=79.97 Aligned_cols=62 Identities=18% Similarity=0.290 Sum_probs=50.8
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
|.|.|++. .+.+.++|..+.||++||+.|+.+....+ .+..|+|+| |.++|++||++|||++
T Consensus 3 mfl~ir~~-ktti~lev~~sdTV~~lK~kI~~~egIP~-------------~qQrLi~~G-k~LeD~~TLsdy~I~~ 64 (118)
T 2fnj_B 3 VFLMIRRH-KTTIFTDAKESSTVFELKRIVEGILKRPP-------------EEQRLYKDD-QLLDDGKTLGECGFTS 64 (118)
T ss_dssp EEEEEEEB-TEEEEEEEETTSBHHHHHHHHHHHHCCCG-------------GGEEEEETT-EECCTTSBHHHHTCCT
T ss_pred EEEEEecC-CEEEEEEeCCcChHHHHHHHHHHHhCCCH-------------HHeEEEECC-eECCCCCCHHHcCccc
Confidence 56666443 35688999999999999999999875443 577899999 6779999999999993
No 80
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.00 E-value=7.9e-10 Score=75.26 Aligned_cols=67 Identities=19% Similarity=0.167 Sum_probs=53.2
Q ss_pred eEEEEEccCCc-EEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecC---ee---eccCcchhhhc
Q 048546 46 LKLSVRKLDGS-CFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNG---QK---LICENDNIKYY 118 (125)
Q Consensus 46 MkltV~k~~g~-~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g---~K---Ll~D~~tL~dy 118 (125)
++|.|....+. .++++|+.+.||++||+.|+......+ .+..|+|.| +. |++|+++|.+|
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~-------------~~qrL~~~~~~g~~~~~l~~D~~tL~~y 74 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPA-------------SCMELELYGADDKFYSKLDQEDALLGSY 74 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCT-------------TTCBCEEECSSSCEEEECCCSSSBTTSS
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCH-------------HHeEEEEeCCCCccccccCCCcCCHhHC
Confidence 78888766553 588999999999999999999875444 344577765 43 57899999999
Q ss_pred CCcCCCC
Q 048546 119 GIRDGDQ 125 (125)
Q Consensus 119 GIkdGd~ 125 (125)
||++|++
T Consensus 75 ~i~~g~~ 81 (95)
T 1v6e_A 75 PVDDGCR 81 (95)
T ss_dssp SCCTTCE
T ss_pred CCCCCCE
Confidence 9999973
No 81
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.00 E-value=6.5e-10 Score=80.67 Aligned_cols=60 Identities=17% Similarity=0.288 Sum_probs=49.7
Q ss_pred EEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 48 LSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 48 ltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
|.| ++.+..+.++|..+.||.+||+.|+......+ .|.+|+|+| |+++|++||++|||++
T Consensus 5 l~I-kr~ktTI~ldve~sdTV~~lK~kI~~~~giPp-------------~qQrLI~~G-k~LeD~kTL~dy~I~~ 64 (118)
T 4ajy_B 5 LMI-RRHKTTIFTDAKESSTVFELKRIVEGILKRPP-------------DEQRLYKDD-QLLDDGKTLGECGFTS 64 (118)
T ss_dssp EEE-EEBTEEEEEEEETTSBHHHHHHHHHHHHCCCG-------------GGEEEEETT-EECCTTSBTTTTTCCG
T ss_pred EEE-ecCCEEEEEEcCCCChHHHHHHHHHHHHCCCH-------------HHeEEEeCC-eECCCcCCHHHcCCCc
Confidence 444 33355788899999999999999999875444 567899999 7779999999999998
No 82
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.93 E-value=3.5e-09 Score=73.52 Aligned_cols=69 Identities=10% Similarity=0.146 Sum_probs=55.8
Q ss_pred CCeEEEEEccCC--cEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCe---e---eccCcchh
Q 048546 44 QPLKLSVRKLDG--SCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQ---K---LICENDNI 115 (125)
Q Consensus 44 ~aMkltV~k~~g--~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~---K---Ll~D~~tL 115 (125)
..++|.|..... ..+++.|+.+.||++||+.|+..+.-.+ .+..|+|.|+ . |++|+++|
T Consensus 13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~-------------~~QrLi~~g~~g~~~~~L~~D~~tL 79 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSV-------------NSMALELYDDSGSKVAVLSDDSRPL 79 (97)
T ss_dssp CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCT-------------TSEEEEEECSSSCBCCCSSGGGSCH
T ss_pred ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCH-------------HHeEEEEecCCCcccceecCCcCCH
Confidence 458888876544 3689999999999999999999986444 4667999873 2 46999999
Q ss_pred hhcCCcCCCC
Q 048546 116 KYYGIRDGDQ 125 (125)
Q Consensus 116 ~dyGIkdGd~ 125 (125)
.+|||++|++
T Consensus 80 ~~Y~I~~g~~ 89 (97)
T 2kj6_A 80 GFFSPFDGFR 89 (97)
T ss_dssp HHHCCCSCCE
T ss_pred HHCCCCCCCE
Confidence 9999999973
No 83
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.92 E-value=2.2e-09 Score=75.19 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=52.6
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEee-cCeeeccCcchhhhcCCcCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCY-NGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~-~g~KLl~D~~tL~dyGIkdGd 124 (125)
|-+.+++..|+.++|+|+.++||++||+.|+++....|+ +|. |+| .+.+ ++|+.+|++|||++|+
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~------------~Qk-Li~~~~gk-L~D~~tLs~~~I~~gs 74 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVS------------KML-LKGWKTGD-VEDSTVLKSLHLPKNN 74 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTT------------TCC-EECCSSSC-CCTTSBHHHHCCCSEE
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChh------------HeE-EEccCCCC-CCCcCCHHHcCCCCCC
Confidence 766677899999999999999999999999999865554 333 454 4335 5889999999999885
No 84
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.89 E-value=5.6e-09 Score=71.94 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=60.3
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
+..|+|.|+..+|+.+.+.|..+.++..|+++++++....+ +++.++|+|+.| .+++|+.+|++.|
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~-------------~~~rf~FdG~~l-~~~~Tp~dl~med 70 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM-------------RQIRFRFDGQPI-NETDTPAQLEMED 70 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCG-------------GGEEEEETTEEC-CTTCCTTTTTCCT
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCc-------------ccEEEEECCEEc-CCCCCHHHcCCCC
Confidence 35699999999999999999999999999999999865333 688999999776 6789999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
||+
T Consensus 71 gD~ 73 (94)
T 2io1_B 71 EDT 73 (94)
T ss_dssp TCE
T ss_pred CCE
Confidence 984
No 85
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.88 E-value=2.1e-09 Score=88.06 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=54.8
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEe---ecCeeeccCcchhhhcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLC---YNGQKLICENDNIKYYGI 120 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~---~~g~KLl~D~~tL~dyGI 120 (125)
..|+|+|+ ..|+.++|+|+.++||++||+.|++.....++ +..|+ |+| ++++|+.+|++|||
T Consensus 4 ~~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~-------------~QkLi~~k~~G-k~l~D~~~L~~~~i 68 (320)
T 3shq_A 4 KEVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPE-------------RQKLLNLKYKG-KTAADNVKISALEL 68 (320)
T ss_dssp CEEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGG-------------GCEETTCBSSS-SBCCTTSBTTSSCC
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHH-------------HeEEeecccCC-cccCccccHHHcCC
Confidence 56999995 78999999999999999999999998765443 33577 889 77799999999999
Q ss_pred cCCC
Q 048546 121 RDGD 124 (125)
Q Consensus 121 kdGd 124 (125)
++|.
T Consensus 69 k~g~ 72 (320)
T 3shq_A 69 KPNF 72 (320)
T ss_dssp C--C
T ss_pred CCCC
Confidence 9986
No 86
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.87 E-value=1.6e-08 Score=67.27 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=61.2
Q ss_pred CCCCCeEEEEEccCCc-EEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcC
Q 048546 41 LPEQPLKLSVRKLDGS-CFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYG 119 (125)
Q Consensus 41 ~~~~aMkltV~k~~g~-~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyG 119 (125)
+.+..|+|.|+..+|+ .+.+.|..+.++..|+++++++....+ .++.++|+|+.| .+++|..+++
T Consensus 3 ~~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~-------------~~~rf~fdG~~l-~~~~Tp~~l~ 68 (79)
T 3a4r_A 3 LGSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSG-------------HKLSFFFDGTKL-SGKELPADLG 68 (79)
T ss_dssp TCCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTT-------------CCCEEEETTEEC-CSCCCHHHHT
T ss_pred CCCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCc-------------ccEEEEECCEEc-CCCCCHHHcC
Confidence 4557899999999996 899999999999999999999865433 567899999776 6788999999
Q ss_pred CcCCCC
Q 048546 120 IRDGDQ 125 (125)
Q Consensus 120 IkdGd~ 125 (125)
+.|||+
T Consensus 69 medgD~ 74 (79)
T 3a4r_A 69 LESGDL 74 (79)
T ss_dssp CCTTCE
T ss_pred CCCCCE
Confidence 999984
No 87
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.87 E-value=6.1e-09 Score=71.52 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=60.1
Q ss_pred CCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCc
Q 048546 42 PEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIR 121 (125)
Q Consensus 42 ~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIk 121 (125)
+++.|+|.|+..+|+.+.+.|..+.++..|+++++++....+ +++.++|+|+.| .+++|..++++.
T Consensus 2 ~~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~-------------~~~rf~FdG~~l-~~~~Tp~dl~me 67 (91)
T 2io0_B 2 ANDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM-------------RQIRFRFDGQPI-NETDTPAQLEME 67 (91)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCS-------------TTEEEEETTEEC-CTTCCTTTTTCC
T ss_pred CCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc-------------ccEEEEECCEEc-CCCCCHHHcCCC
Confidence 457899999999999999999999999999999999754333 578899999777 677899999999
Q ss_pred CCCC
Q 048546 122 DGDQ 125 (125)
Q Consensus 122 dGd~ 125 (125)
|||+
T Consensus 68 dgD~ 71 (91)
T 2io0_B 68 DEDT 71 (91)
T ss_dssp TTEE
T ss_pred CCCE
Confidence 9984
No 88
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.86 E-value=3.4e-09 Score=71.86 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=51.0
Q ss_pred eEEEEE--ccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEee-------cCeeeccCcchhh
Q 048546 46 LKLSVR--KLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCY-------NGQKLICENDNIK 116 (125)
Q Consensus 46 MkltV~--k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~-------~g~KLl~D~~tL~ 116 (125)
++|.|. ......+++.++.+.||.+||+.|+..+.-.+ .+..|+| .| ++++|+++|.
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~-------------~~QrLi~~~~~~~~~g-~~l~d~~tL~ 68 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPP-------------EYMQLQLIDDRGITIE-KNMANDKQLG 68 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCG-------------GGEEEEEECTTSCEEE-SSCCTTSBGG
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCH-------------HHEEEEEecCCCCcee-eEcCCCCCHH
Confidence 345553 23445578999999999999999999875444 4667776 45 7889999999
Q ss_pred hcCCcCCCC
Q 048546 117 YYGIRDGDQ 125 (125)
Q Consensus 117 dyGIkdGd~ 125 (125)
+|||+||.+
T Consensus 69 ~Y~i~~g~~ 77 (86)
T 4b6w_A 69 YYQCRDEFV 77 (86)
T ss_dssp GGTCCTTCE
T ss_pred HCCCCCCCE
Confidence 999999963
No 89
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.85 E-value=6.8e-09 Score=73.91 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=54.4
Q ss_pred CeEEEEEccCCc-EEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecC---ee---eccCcchhhh
Q 048546 45 PLKLSVRKLDGS-CFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNG---QK---LICENDNIKY 117 (125)
Q Consensus 45 aMkltV~k~~g~-~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g---~K---Ll~D~~tL~d 117 (125)
.|+|.|....+. .+.+.|+.++||++||+.|+......+ .+..|+|.| +. |++|+.+|.+
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~-------------~~qrL~~~g~~~~~~~~l~~D~~tL~~ 72 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTV-------------DSMRIQLFDGDDQLKGELTDGAKSLKD 72 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCT-------------TTEEEEEECSSSSEEEECCCCSSBTTT
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCH-------------HHeEEEEecCCCccccccCCCcCCHHH
Confidence 588989776554 588999999999999999999976444 456788876 33 4689999999
Q ss_pred cCCcCCC
Q 048546 118 YGIRDGD 124 (125)
Q Consensus 118 yGIkdGd 124 (125)
|||.+|+
T Consensus 73 y~i~~g~ 79 (122)
T 1t0y_A 73 LGVRDGY 79 (122)
T ss_dssp TTCCSSE
T ss_pred CCCCCCC
Confidence 9999986
No 90
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.83 E-value=1.2e-08 Score=66.39 Aligned_cols=66 Identities=20% Similarity=0.300 Sum_probs=58.3
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|.|+..+|+.+.+.|..+.++..|+++++++....+ +++.++|+|+.| .+++|..++|+.|||+
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~-------------~~~rf~fdG~~l-~~~~Tp~~l~medgD~ 67 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM-------------RQIRFRFDGQPI-NETDTPAQLEMEDEDT 67 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCT-------------TTCEEEETTEEC-CTTCCTTTTTCCTTEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc-------------ceEEEEECCEEc-CCCCCHHHcCCCCCCE
Confidence 89999999999999999999999999999999865333 577899999777 6778999999999984
No 91
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.72 E-value=3.1e-08 Score=67.37 Aligned_cols=70 Identities=14% Similarity=0.307 Sum_probs=54.0
Q ss_pred CCCeEEEEEc---cCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecC-------eeeccCc
Q 048546 43 EQPLKLSVRK---LDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNG-------QKLICEN 112 (125)
Q Consensus 43 ~~aMkltV~k---~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g-------~KLl~D~ 112 (125)
++.++|+|.. .+|..+++.++.+.||.+||..|++.+...+. +..|.|.+ ..|.+|.
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~-------------~q~L~~~~~~~~~~~~~L~~d~ 73 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVS-------------ELLLSYESSKMPGREIELENDL 73 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTT-------------TCEEEEECTTSCSCEEECCCSS
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChh-------------HeEEEEEcCCCCceeeccCCCc
Confidence 4568888864 57888999999999999999999999864442 22344442 2366899
Q ss_pred chhhhcCCcCCCC
Q 048546 113 DNIKYYGIRDGDQ 125 (125)
Q Consensus 113 ~tL~dyGIkdGd~ 125 (125)
++|.+|||.||+.
T Consensus 74 ~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 74 QPLQFYSVENGDC 86 (97)
T ss_dssp SBSGGGTCCTTCE
T ss_pred ccHhhcCCCCCCE
Confidence 9999999999974
No 92
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.71 E-value=5e-08 Score=66.84 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=60.3
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
+..|+|.|+..+|+.+.+.|..+.++..|+++++++....+ +++.++|+|+.| .+++|..+|++.|
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~-------------~~~rf~fdG~~l-~~~~Tp~dl~med 80 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM-------------RQIRFRFDGQPI-NETDTPAQLEMED 80 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCG-------------GGEEEEETTEEC-CTTCCTTTTTCCT
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCc-------------cceEEEECCEEc-CCCCCHHHcCCCC
Confidence 35799999999999999999999999999999999865333 688999999776 6789999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
||+
T Consensus 81 gD~ 83 (93)
T 2d07_B 81 EDT 83 (93)
T ss_dssp TEE
T ss_pred CCE
Confidence 984
No 93
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.64 E-value=8.4e-08 Score=67.40 Aligned_cols=68 Identities=19% Similarity=0.290 Sum_probs=59.7
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
..|+|.|+..+|+.+.+.|..+.++..|+++++++....+ .++.++|+|+.| .+++|..++++.||
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~-------------~~~rf~FdG~~l-~~~~Tp~dl~medg 88 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM-------------RQIRFRFDGQPI-NETDTPAQLEMEDE 88 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCT-------------TTSCEESSSSBC-CTTSCTTTTTCCTT
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCc-------------ceEEEEECCEEc-CCCCCHHHcCCCCC
Confidence 5799999999999999999999999999999999875433 466799999777 67889999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
|+
T Consensus 89 D~ 90 (104)
T 1wz0_A 89 DT 90 (104)
T ss_dssp EE
T ss_pred CE
Confidence 84
No 94
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.63 E-value=6e-08 Score=69.00 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=60.2
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
+..|+|.|+..+|+.+.+.|..+.++..|+++++++....+ +++.++|+|+.| .+++|..++++.|
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~-------------~~~rfiFdG~~L-~~~~Tp~dl~mED 89 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISR-------------NSVRFLFDGTPI-DETKTPEELGMED 89 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCS-------------SSCEEESSSCBC-CSSSHHHHHHCSS
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc-------------ccEEEEECCEEc-CCCCCHHHcCCCC
Confidence 36799999999999999999999999999999999865333 577899999777 6778999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
||+
T Consensus 90 gD~ 92 (110)
T 2k8h_A 90 DDV 92 (110)
T ss_dssp EEE
T ss_pred CCE
Confidence 984
No 95
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.56 E-value=1.9e-07 Score=66.10 Aligned_cols=67 Identities=16% Similarity=0.237 Sum_probs=58.7
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
..|+|.|+. +|+.+.+.|..+.++..|+++++++....+ .++.++|+|+.| .+++|..++|+.||
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~-------------~~~rF~FdG~rl-~~~~Tp~dl~medg 94 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-------------DSLRFLYDGIRI-QADQTPEDLDMEDN 94 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCG-------------GGEEEEETTEEC-CTTCCTTTTTCCTT
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCc-------------ccEEEEECCeEc-CCCCCHHHcCCCCC
Confidence 569999999 999999999999999999999999864333 688999999777 67889999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
|+
T Consensus 95 D~ 96 (106)
T 2eke_C 95 DI 96 (106)
T ss_dssp EE
T ss_pred CE
Confidence 84
No 96
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.40 E-value=3.4e-08 Score=76.41 Aligned_cols=57 Identities=12% Similarity=0.260 Sum_probs=0.0
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhh
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIK 116 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~ 116 (125)
|.|+|+.++|+.+.++|+++.||.+||+.|+......+ .+..|+|+| +.++|+.+|+
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~-------------~qQRLIf~G-K~LeD~~TLs 57 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEI-------------DMMTLVNNG-FIAPNTELVT 57 (189)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcCh-------------hHEEEEecC-eECCCCCccc
Confidence 88999999999999999999999999999999764333 456799999 5568888987
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.28 E-value=3e-06 Score=60.96 Aligned_cols=69 Identities=20% Similarity=0.284 Sum_probs=60.3
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
..-|+|.|+..+|..+.+.|..+.++..|++++++.....+ +++.+.|+|++| .+++|..++|+.|
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~-------------~~irFlFDG~rI-~~~~TP~dL~MED 103 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPM-------------NSLRFLFEGQRI-ADNHTPKELGMEE 103 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCT-------------TSEEEEETTEEC-CTTCCTTTTTCCT
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCCh-------------hhEEEEECCeEC-CCCCCHHHcCCCC
Confidence 35799999999999999999999999999999999875333 688999999877 6789999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
||+
T Consensus 104 gD~ 106 (115)
T 3kyd_D 104 EDV 106 (115)
T ss_dssp TCE
T ss_pred CCE
Confidence 984
No 98
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.19 E-value=1.2e-06 Score=58.44 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=50.1
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecC-eee-ccCcchhhhcCCc
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNG-QKL-ICENDNIKYYGIR 121 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g-~KL-l~D~~tL~dyGIk 121 (125)
..|.|.|++.+|. +.|+|++++||.||++.|++.+....... ...+.+.. +.| ..++.+|++.||+
T Consensus 3 ~~m~lRvrs~~G~-~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~-----------~l~~~~~p~~~l~~~~~~~l~~lgl~ 70 (80)
T 2pjh_A 3 ESIIIRVQSPDGV-KRITATKRETAATFLKKVAKEFGFQNNGF-----------SVYINRNKTGEITASSSKSLHLLKIK 70 (80)
T ss_dssp CCCCCEEECSSEE-EECCCCSSCCHHHHHHHHHHHTCCCTTTC-----------CCCCSCCGGGGSSSCCCCTTTTTCCC
T ss_pred CcEEEEEECCCCC-EEEEcCCcChHHHHHHHHHHHcCCCCCcc-----------eEEecCCCCCcccCCCCCCHHHcCCC
Confidence 4689999888885 46889999999999999999886332211 11222232 123 2377899999999
Q ss_pred CCCC
Q 048546 122 DGDQ 125 (125)
Q Consensus 122 dGd~ 125 (125)
.||.
T Consensus 71 hGd~ 74 (80)
T 2pjh_A 71 HGDL 74 (80)
T ss_dssp TTCC
T ss_pred CCCE
Confidence 9995
No 99
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.17 E-value=6.7e-06 Score=55.89 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=52.9
Q ss_pred CeEEEEEc--cCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 45 PLKLSVRK--LDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 45 aMkltV~k--~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
-|+||+.- -.|+.|++.||..-||.+|.+.+-+.+......... -+......+ .++.++++|+||||+|
T Consensus 4 yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~--------~~irv~NK~-~~L~~~~~L~d~~Itn 74 (81)
T 2bps_A 4 YIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREG--------HWIRVVNKD-KVFSGECKLSDCGITN 74 (81)
T ss_dssp EEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTT--------CEEEEGGGT-EEEETTSBTGGGTCCT
T ss_pred EEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCC--------CEEEEecCC-EEEcCCCEEeeCCcCC
Confidence 46777742 478899999999999999999999998633211110 023344455 6778999999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
||.
T Consensus 75 GD~ 77 (81)
T 2bps_A 75 GDR 77 (81)
T ss_dssp TCE
T ss_pred CCE
Confidence 984
No 100
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.13 E-value=1.5e-05 Score=54.51 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=59.2
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
+..|++-+++....-+.+.|+.++||.+|=+++..+....+. +.+.|.|+|..| +.+.++.||++.|
T Consensus 7 ~~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~------------~~IrllFDGdRL-dp~~tp~DlemeD 73 (82)
T 3goe_A 7 HKLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFH------------ERIRLEFEGEWL-DPNDQVQSTELED 73 (82)
T ss_dssp CCEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCC------------TTCEEEETTEEC-CTTSBGGGSSCCT
T ss_pred hHHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcC------------ceEEEEEcCccc-CccCChhhhCCcC
Confidence 356888888888888999999999999999999998653332 367899999777 7889999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
||+
T Consensus 74 ~D~ 76 (82)
T 3goe_A 74 EDQ 76 (82)
T ss_dssp TCE
T ss_pred Cce
Confidence 995
No 101
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.95 E-value=2.7e-05 Score=60.56 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=59.1
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
+.-|+|.|+ .+|....+.|..+.++..|+++++++....+ +++.++|+|++| .++.|..++|+.|
T Consensus 27 ~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~-------------~~~RF~FdG~rI-~~~~TP~dL~MEd 91 (200)
T 3pge_A 27 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-------------DSLRFLYDGIRI-QADQTPEDLDMED 91 (200)
T ss_dssp CCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCG-------------GGEEEEETTEEC-CTTCCTTTTTCCT
T ss_pred CCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCCh-------------hhEEEEECCEEc-CCCCCHHHcCCCC
Confidence 466999995 6999999999999999999999999865433 789999999887 6789999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
||+
T Consensus 92 gD~ 94 (200)
T 3pge_A 92 NDI 94 (200)
T ss_dssp TEE
T ss_pred CCE
Confidence 984
No 102
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.79 E-value=3.7e-05 Score=60.36 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=58.1
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
+..|+|.|+ .+|..+.+.|..+.++..|++++.++....+ +++.++|+|++| .+++|..++++.|
T Consensus 55 ~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~-------------~sIRFLFDGqRI-~~ddTPeDLdMED 119 (207)
T 3tix_A 55 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-------------DSLTFLYDGIEI-QADQTPEDLDMED 119 (207)
T ss_dssp CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCG-------------GGSCEEETTEEC-CSSCCTTTTTCCT
T ss_pred CCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCc-------------ccEEEEECCeec-CCCCCHHHcCCCC
Confidence 456999995 6999999999999999999999999764333 577899999887 6789999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
||+
T Consensus 120 GDt 122 (207)
T 3tix_A 120 NDI 122 (207)
T ss_dssp TEE
T ss_pred CCE
Confidence 984
No 103
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.74 E-value=0.00011 Score=51.07 Aligned_cols=68 Identities=19% Similarity=0.344 Sum_probs=57.6
Q ss_pred CCeEEEEEccCCc-EEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 44 QPLKLSVRKLDGS-CFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 44 ~aMkltV~k~~g~-~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
..|+|.|+..+|. .+.+.|..+.+...|.+++.+.....+ +++.+.|+|++| ..++|-.++++.|
T Consensus 24 ~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~-------------~~vrF~FDG~rI-~~~~TP~dLdMED 89 (97)
T 2jxx_A 24 QQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSG-------------RKLSFFFDGTKL-SGRELPADLGMES 89 (97)
T ss_dssp SEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSS-------------SCCEEEETTEEC-CSCSCHHHHTCCT
T ss_pred CeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCc-------------ccEEEEECCEEc-CCCCCHHHcCCCC
Confidence 5699999999995 788999999999999999988764333 567899999887 6778999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
||+
T Consensus 90 gD~ 92 (97)
T 2jxx_A 90 GDL 92 (97)
T ss_dssp TEE
T ss_pred CCE
Confidence 984
No 104
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.46 E-value=1.8e-05 Score=62.93 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred CCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCc
Q 048546 42 PEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIR 121 (125)
Q Consensus 42 ~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIk 121 (125)
|+.-|+|.| ..+|..+.+.|..+..+..|+++++++....+ +++.+.|+|++| .+++|..++|+.
T Consensus 18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~-------------~siRFLFDGqRI-~dddTPadL~ME 82 (227)
T 3v7o_A 18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-------------DSLRFLYDGIRI-QADQTPEDLDME 82 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCc-------------cceEEEECCEec-CCCCCHHHcCCC
Confidence 346799999 88999999999999999999999999764333 577899999887 678999999999
Q ss_pred CCCC
Q 048546 122 DGDQ 125 (125)
Q Consensus 122 dGd~ 125 (125)
|||+
T Consensus 83 DGDt 86 (227)
T 3v7o_A 83 DNDI 86 (227)
T ss_dssp ----
T ss_pred CCCE
Confidence 9995
No 105
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.30 E-value=0.0017 Score=47.37 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=35.0
Q ss_pred CCCCCe--EEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 41 LPEQPL--KLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 41 ~~~~aM--kltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
|.-.++ .|.|+-.||+...+.|+.+.||.+++..|.+++.
T Consensus 5 l~f~~k~r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kig 46 (128)
T 2kc2_A 5 VPRGSHMRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG 46 (128)
T ss_dssp CSCSSEEEEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHT
T ss_pred eEeccCCccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhC
Confidence 333455 7999999999999999999999999999999986
No 106
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.95 E-value=0.002 Score=49.32 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=59.0
Q ss_pred CCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCc
Q 048546 42 PEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIR 121 (125)
Q Consensus 42 ~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIk 121 (125)
++..|+|.|+. +|....+.|..+.+..-|+++.+++....+ +++.+.|+|+++ .+++|-.+..+.
T Consensus 18 ~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~-------------~~~~f~fdG~~i-~~~~Tpk~L~~e 82 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-------------DSLRFLYDGIRI-QADQTPEDLDME 82 (209)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCG-------------GGCEEEETTEEC-CTTCCTTTTTCC
T ss_pred CCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCCh-------------heEEEEECCEec-cCCCChHHhhhc
Confidence 45679999976 888888999999999999999999875444 688999999887 678899999999
Q ss_pred CCCC
Q 048546 122 DGDQ 125 (125)
Q Consensus 122 dGd~ 125 (125)
|||.
T Consensus 83 d~d~ 86 (209)
T 3uf8_A 83 DNDI 86 (209)
T ss_dssp TTEE
T ss_pred cccc
Confidence 9873
No 107
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.90 E-value=0.0029 Score=43.75 Aligned_cols=67 Identities=9% Similarity=0.146 Sum_probs=54.5
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
.+|.|+|...+|....|.|.++.|+.|+=+..-++|...+ .+|+|.|++ |.+|-+-.++-.||-+|
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~-------------~~~~Lkh~~-k~lDLSlpfRlsgLpnn 73 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNP-------------SEYDLKFQR-TVLDLSLQWRFANLPNN 73 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCG-------------GGCEEEETT-EEESSSCBHHHHCCCSS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCCh-------------hhCeEEeCC-EeccccceeEecCCCCC
Confidence 6799999999999999999999999997666666666543 688999999 55588888888888887
Q ss_pred C
Q 048546 124 D 124 (125)
Q Consensus 124 d 124 (125)
.
T Consensus 74 A 74 (90)
T 2al3_A 74 A 74 (90)
T ss_dssp C
T ss_pred C
Confidence 5
No 108
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=96.71 E-value=0.00025 Score=59.48 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=0.0
Q ss_pred CCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCc
Q 048546 42 PEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIR 121 (125)
Q Consensus 42 ~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIk 121 (125)
|+.-|+|.|+. +|....+.|..+.++..|+++++++....+ +++.+.|+|++| .+++|..++|+.
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~-------------~~~rFlFdG~rI-~~~~TP~~L~ME 82 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-------------DSLRFLYDGIRI-QADQTPEDLDME 82 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCc-------------ceEEEEECCeEC-CCCCChHHcCCC
Confidence 45678999976 788888889999999999999998764333 577899999887 677999999999
Q ss_pred CCCC
Q 048546 122 DGDQ 125 (125)
Q Consensus 122 dGd~ 125 (125)
|||+
T Consensus 83 DgD~ 86 (360)
T 3ix6_A 83 DNDI 86 (360)
T ss_dssp ----
T ss_pred ccch
Confidence 9995
No 109
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.40 E-value=0.00052 Score=56.31 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
+..|+|.|+. +|....+.|..+.+...|+++.+++....+ +++.+.|+|++| .+++|-.++|+.|
T Consensus 28 ~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~-------------~~~~f~f~G~~i-~~~~Tp~~l~med 92 (389)
T 4da1_A 28 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-------------DSLRFLYDGIRI-QADQAPEDLDMED 92 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCc-------------ceEEEEECCEEc-CCCCCHHHcCCCC
Confidence 3568899976 788888889999999999999999865433 578899999887 6789999999999
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
||+
T Consensus 93 ~d~ 95 (389)
T 4da1_A 93 NDI 95 (389)
T ss_dssp ---
T ss_pred CCE
Confidence 984
No 110
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=96.38 E-value=0.022 Score=39.69 Aligned_cols=67 Identities=9% Similarity=0.180 Sum_probs=57.1
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
..|+|.|+ .+|..+-+.|..+.-..-|.+|..+.....+ .+..+.|+|++| .+++|=.+.|+.||
T Consensus 20 ~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~-------------~sirFlfDG~rI-~~~~TP~~L~meD~ 84 (95)
T 2l76_A 20 RLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSP-------------SRILLLFGETEL-SPTATPRTLKLGVA 84 (95)
T ss_dssp CCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCG-------------GGEEEEETTEEC-CTTSCHHHHTCCSS
T ss_pred CeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCCh-------------hhEEEEECCcCC-CCCCCHhHcCCCCC
Confidence 56999998 5788888999999999999999888765444 578899999998 67789999999999
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
|+
T Consensus 85 Di 86 (95)
T 2l76_A 85 DI 86 (95)
T ss_dssp CE
T ss_pred CE
Confidence 84
No 111
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.29 E-value=0.072 Score=36.87 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=55.7
Q ss_pred CCCCCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecC--eeeccCcchhh
Q 048546 39 NKLPEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNG--QKLICENDNIK 116 (125)
Q Consensus 39 ~~~~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g--~KLl~D~~tL~ 116 (125)
++.|+++.+|.|.-...++.-|-|.+.++..+|=-+|-++-+..|+ ++.|.... ..-++-+++|.
T Consensus 4 ~~~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~-------------~~~Ll~d~~~~e~LdLskSLn 70 (91)
T 2daj_A 4 GSSGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPL-------------HTLLLKDYQSQEPLDLTKSLN 70 (91)
T ss_dssp CSCCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTT-------------SEEEESCSSCCCBCCTTSCHH
T ss_pred CCCCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChh-------------hEEEecCCCCCcccchhcchh
Confidence 5789999999997666677777899999999999999998766664 44454432 23357889999
Q ss_pred hcCCcC
Q 048546 117 YYGIRD 122 (125)
Q Consensus 117 dyGIkd 122 (125)
||||++
T Consensus 71 dlgirE 76 (91)
T 2daj_A 71 DLGLRE 76 (91)
T ss_dssp HHTCSE
T ss_pred hhhhhh
Confidence 999985
No 112
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=94.87 E-value=0.1 Score=37.12 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=51.2
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEee--cCeeeccCcchhhhcCCc
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCY--NGQKLICENDNIKYYGIR 121 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~--~g~KLl~D~~tL~dyGIk 121 (125)
...+|.|+--||+.+.-....+.||.||..-|........ +..|.|+. -.+.+.+++.||.+.|+.
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~------------~~~f~L~t~fPrk~l~d~~~TL~eagL~ 118 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMA------------ATSFVLMTTFPNKELADENQTLKEANLL 118 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGG------------TSCEEEEETTTTEECCSTTCBHHHHTCS
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCC------------CCCeEEecCCCCCCCCCCCCcHHHCCCc
Confidence 4678999889999987778889999999999998632111 14555554 465666668999999998
Q ss_pred CC
Q 048546 122 DG 123 (125)
Q Consensus 122 dG 123 (125)
+.
T Consensus 119 ps 120 (127)
T 1s3s_G 119 NA 120 (127)
T ss_dssp SC
T ss_pred Cc
Confidence 74
No 113
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=94.60 E-value=0.17 Score=32.95 Aligned_cols=67 Identities=13% Similarity=0.246 Sum_probs=49.1
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEee--cCeeec--cCcchhhhcC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCY--NGQKLI--CENDNIKYYG 119 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~--~g~KLl--~D~~tL~dyG 119 (125)
...+|.|+--||+.+.-.-..+.||.+|...|... . .. +..|.|.. -.+.+. +.+.||.+.|
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~-~-~~------------~~~f~L~t~fPrk~l~~~d~~~TL~e~g 71 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-G-FP------------WDEYKLLSTFPRRDVTQLDPNKSLLEVK 71 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHT-T-CC------------TTTEEEECSSSCCBGGGSCTTSBTTTTT
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHc-C-CC------------CCCeEEEeCCCCCCCcCCCCCCCHHHCC
Confidence 45689999999998777778899999999999873 1 11 14555653 344554 5678999999
Q ss_pred CcCCC
Q 048546 120 IRDGD 124 (125)
Q Consensus 120 IkdGd 124 (125)
+.+++
T Consensus 72 L~p~a 76 (84)
T 3qx1_A 72 LFPQE 76 (84)
T ss_dssp CCSEE
T ss_pred CCCCC
Confidence 98753
No 114
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=92.90 E-value=0.61 Score=32.09 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=48.7
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEee--cCeeec--cCcchhhhcC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCY--NGQKLI--CENDNIKYYG 119 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~--~g~KLl--~D~~tL~dyG 119 (125)
...+|.||--||+.+.-.-..+.||.||...|..... .+ +..|.|+- -.+.+. +.++||.+.|
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~-~~------------~~~f~L~t~fPrk~l~~~d~~~TL~elg 78 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVG-NT------------YGNFSLATMFPRREFTREDYKRRLLDLE 78 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHT-TS------------SCSCEEECSSSCCBCCTTTTTSBTGGGT
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccC-CC------------CCceEEEcCCCCcCCcccccCCCHHHCC
Confidence 3578999999999888888999999999999998742 11 13344443 343343 3578999999
Q ss_pred CcCC
Q 048546 120 IRDG 123 (125)
Q Consensus 120 IkdG 123 (125)
+.+.
T Consensus 79 L~ps 82 (109)
T 2dzk_A 79 LAPS 82 (109)
T ss_dssp CSSE
T ss_pred CCCc
Confidence 8764
No 115
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.79 E-value=0.17 Score=38.72 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=45.3
Q ss_pred CeEEEEEccCCc--EEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 45 PLKLSVRKLDGS--CFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 45 aMkltV~k~~g~--~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
.+.+.+...... .+.+.++..+||.+|++.+.+.|...++... ++|+-+-- -....|.+++.||.+++|.+
T Consensus 127 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~------RlW~~~~~-~~~~~L~~~~~tl~~~~l~~ 199 (217)
T 4a3p_A 127 LTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKET------RLWNKYMS-NTFEPLNKPDSTIQDAGLYQ 199 (217)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCE------EEEEEEET-TEEEECCCTTSBHHHHTCCT
T ss_pred ccEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCce------EEEEecCC-CCeeecCCCCCCHHHhCCCC
Confidence 355556555433 2456679999999999999999865443111 23432210 01224444467999999988
Q ss_pred CC
Q 048546 123 GD 124 (125)
Q Consensus 123 Gd 124 (125)
|+
T Consensus 200 ~Q 201 (217)
T 4a3p_A 200 GQ 201 (217)
T ss_dssp TC
T ss_pred CC
Confidence 86
No 116
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=92.45 E-value=0.88 Score=32.12 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=49.5
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEee--cCeee--ccCcchhhhcC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCY--NGQKL--ICENDNIKYYG 119 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~--~g~KL--l~D~~tL~dyG 119 (125)
...+|.||--||+.+.-....+.||.+|...|... .. . +..|.|+. -.+.| .+.+.+|.+.|
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~-~------------~~~F~L~t~fPrk~l~~~d~~~TL~e~g 107 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GY-P------------NERFELLTNFPRRKLSHLDYDITLQEAG 107 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HC-C------------TTTEEEECSSSCCEETSSCSSSCTTTTT
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CC-C------------CCCeEEecCCCCcCCccCCCCCCHHHCC
Confidence 46899999999998888888899999999999875 22 1 14455553 35455 35689999999
Q ss_pred CcCC
Q 048546 120 IRDG 123 (125)
Q Consensus 120 IkdG 123 (125)
+.+.
T Consensus 108 L~ps 111 (124)
T 1wj4_A 108 LCPQ 111 (124)
T ss_dssp CCSS
T ss_pred CCCc
Confidence 9764
No 117
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.43 E-value=0.6 Score=35.94 Aligned_cols=70 Identities=17% Similarity=0.219 Sum_probs=45.7
Q ss_pred CeEEEEEccCCcE--EEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeec---CeeeccCcchhhhcC
Q 048546 45 PLKLSVRKLDGSC--FDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYN---GQKLICENDNIKYYG 119 (125)
Q Consensus 45 aMkltV~k~~g~~--~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~---g~KLl~D~~tL~dyG 119 (125)
.+.+++....... +.+.++..+||.+|++.+.+.|...++... ++|.++. ...|.+++.||.+++
T Consensus 139 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~----------RLW~~~~~~~~~~L~~~~~tl~d~~ 208 (231)
T 3jyu_A 139 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERET----------RLWNKYMSNTYEQLSKLDNTIQDAG 208 (231)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCE----------EEEECSSSSSCEECCCTTSBTTTTT
T ss_pred cceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeE----------EEEEecCCCCHhhhcCCCCCHHHhC
Confidence 3555665554433 345569999999999999999875443111 2334342 234555579999999
Q ss_pred CcCCC
Q 048546 120 IRDGD 124 (125)
Q Consensus 120 IkdGd 124 (125)
|.+|+
T Consensus 209 L~~~Q 213 (231)
T 3jyu_A 209 LYQGQ 213 (231)
T ss_dssp CCTTE
T ss_pred CCCCC
Confidence 98875
No 118
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=92.06 E-value=0.59 Score=31.78 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=42.6
Q ss_pred CCeEEEEEccCCcEEEEEeCC-CCcHHHHHH-HHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhc
Q 048546 44 QPLKLSVRKLDGSCFDIEVMK-TATIAELRQ-AVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYY 118 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~-~ATV~dLK~-aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dy 118 (125)
.+|||+|+ ..+..+-|.... +-||.+|=+ |+.++.+..+.... +|-+|= .|-+.|-.|++.++.|.|-
T Consensus 1 ~~MKvtV~-fg~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~---~~v~V~---~l~~~~ggiLD~DD~l~dV 70 (85)
T 2ns5_A 1 SEFKVTVC-FGRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPN---YWIQVH---RLEHGDGGILDLDDILCDV 70 (85)
T ss_dssp CCEEEEEE-ETTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTT---SCEEEE---EEECSSSCEECTTSCHHHH
T ss_pred CccEEEEE-ECCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCC---cEEEEE---EEEeCCCcEeCcccchhhh
Confidence 37999994 447777776643 469999954 77776665554222 233321 1344444888888888765
No 119
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=91.30 E-value=0.96 Score=36.33 Aligned_cols=61 Identities=13% Similarity=0.270 Sum_probs=43.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecC---e--eeccCcchhhhcCCcCCC
Q 048546 55 GSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNG---Q--KLICENDNIKYYGIRDGD 124 (125)
Q Consensus 55 g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g---~--KLl~D~~tL~dyGIkdGd 124 (125)
+..-.+..+++.||.|.-+.|.++++.... + . |..|-|.-.. + .-+++.++|..||+++|+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~-~----~----~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~ 77 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALA-G----P----PNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGD 77 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGS-S----C----GGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTC
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccC-C----C----HHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCc
Confidence 666788889999999999999997752210 1 1 3566565521 1 324667799999999987
No 120
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=89.77 E-value=2.3 Score=33.19 Aligned_cols=68 Identities=9% Similarity=0.083 Sum_probs=49.3
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEee--cCee-eccCcchhhhcC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCY--NGQK-LICENDNIKYYG 119 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~--~g~K-Ll~D~~tL~dyG 119 (125)
++.|.+.|.-.|| .+.|.|+.++|+.||=+.|.+....... .-|.|.| +|.. -++.+++|.+.+
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~------------~~FgL~~~~~~~~~wL~~~~~i~~q~ 86 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRET------------WFFGLQYTIKDTVAWLKMDKKVLDHD 86 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCG------------GGEEEEEEETTEEEECCTTSBGGGSS
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCC------------ccceEEEEeCCcCeeCCCccCHHHcC
Confidence 4789999999999 7889999999999999999998753321 3344544 4433 366677888776
Q ss_pred CcCC
Q 048546 120 IRDG 123 (125)
Q Consensus 120 IkdG 123 (125)
++.+
T Consensus 87 ~~~~ 90 (314)
T 1h4r_A 87 VSKE 90 (314)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 5443
No 121
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=89.07 E-value=3.2 Score=28.10 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=34.5
Q ss_pred CCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCC
Q 048546 43 EQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMP 83 (125)
Q Consensus 43 ~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~ 83 (125)
+++|+|.+ ..+|..+.+.|+.+.+..+|.+.+...++..+
T Consensus 4 ~~~vkvK~-~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~ 43 (89)
T 1vd2_A 4 GSQVRVKA-YYRGDIMITHFEPSISFEGLCNEVRDMCSFDN 43 (89)
T ss_dssp SSCEEEEE-ESSSCEEEEEECTTCCHHHHHHHHHHHTTCCS
T ss_pred CCeEEEEE-EeCCeEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 36799999 77788888889999999999999999887543
No 122
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=88.76 E-value=2.4 Score=26.60 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=22.1
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHH
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAV 75 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI 75 (125)
.|+|+|.-. .....++++..+||.||.+.+
T Consensus 4 ~m~i~vNg~-~~~~~~~~~~~~tv~~Ll~~l 33 (70)
T 1ryj_A 4 GMKFTVITD-DGKKILESGAPRRIKDVLGEL 33 (70)
T ss_dssp CEEEEEEET-TEEEEEEESSCCBHHHHHHHT
T ss_pred eEEEEEeCc-cCceeEECCCCCcHHHHHHHh
Confidence 489988433 333467788889999999876
No 123
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=88.57 E-value=1.1 Score=29.78 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=28.1
Q ss_pred CCCeEEEEEcc-------CCcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 43 EQPLKLSVRKL-------DGSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 43 ~~aMkltV~k~-------~g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
..+|+|+|+-. ......++++..+||.||.+.+...+.
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p 51 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHE 51 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCG
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHCh
Confidence 46899999643 224567888888999999999988653
No 124
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=88.44 E-value=1.6 Score=29.86 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=48.7
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEe--ecCeeec-cCcchhhhcCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLC--YNGQKLI-CENDNIKYYGI 120 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~--~~g~KLl-~D~~tL~dyGI 120 (125)
...+|.||--||+.+.-.-..+.||.+|...|...- .. +..|.|+ |-.+.+. +.+.||.+.|+
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~-~~-------------~~~f~L~t~fPrk~l~~d~~~TL~e~gL 87 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVG-YH-------------KSLYRLSTSFPRRALEVEGGSSLEDIGI 87 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHT-CC-------------TTTEEEECSSSCCBCCCCSSCBHHHHTC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcC-CC-------------CCCeEEEeCCCCcCCCCCCCCCHHHcCC
Confidence 368999999999987767788999999999998641 11 1345554 3355564 46799999999
Q ss_pred cCC
Q 048546 121 RDG 123 (125)
Q Consensus 121 kdG 123 (125)
.++
T Consensus 88 ~p~ 90 (109)
T 2cr5_A 88 TVD 90 (109)
T ss_dssp SSC
T ss_pred CCC
Confidence 875
No 125
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=87.35 E-value=1 Score=30.16 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=34.4
Q ss_pred CCeEEEEEccCCcEEEEEeCCC-CcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKT-ATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRD 122 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~-ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkd 122 (125)
..|+|+| +|+. ++++.. +||.||-+.+.- .+ +...+..+|+-+ +.....+.-++|
T Consensus 19 ~~M~I~v---NGe~--~el~~~~~Tv~dLL~~L~~----~~-------------~~vaVavNg~iV--~~~~~~~~~L~d 74 (87)
T 1tyg_B 19 GRHMLQL---NGKD--VKWKKDTGTIQDLLASYQL----EN-------------KIVIVERNKEII--GKERYHEVELCD 74 (87)
T ss_dssp ---CEEE---TTEE--ECCSSSCCBHHHHHHHTTC----TT-------------SCCEEEETTEEE--CGGGTTTSBCCS
T ss_pred cceEEEE---CCEE--EECCCCCCcHHHHHHHhCC----CC-------------CCEEEEECCEEC--ChhhcCCcCCCC
Confidence 4687777 7776 455777 999999887631 11 234466677443 223444556888
Q ss_pred CCC
Q 048546 123 GDQ 125 (125)
Q Consensus 123 Gd~ 125 (125)
||+
T Consensus 75 GD~ 77 (87)
T 1tyg_B 75 RDV 77 (87)
T ss_dssp SSE
T ss_pred CCE
Confidence 874
No 126
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=87.33 E-value=2 Score=30.37 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=26.6
Q ss_pred CeEEEEEcc--CCcEEEEEeCCCCcHHHHHHHHHHHh
Q 048546 45 PLKLSVRKL--DGSCFDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 45 aMkltV~k~--~g~~~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
.|+|+|.-. ++..++|.|-.-.||.+.|+.|-.++
T Consensus 11 ~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~v 47 (111)
T 4e71_A 11 PLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQV 47 (111)
T ss_dssp EEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHH
Confidence 566766533 34568888888899999999888864
No 127
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=87.31 E-value=4.6 Score=30.98 Aligned_cols=65 Identities=17% Similarity=0.226 Sum_probs=45.5
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEee---cCe-eeccCcchhhhcCC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCY---NGQ-KLICENDNIKYYGI 120 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~---~g~-KLl~D~~tL~dyGI 120 (125)
+|.+.|.-.|| .+.|.|+.++|+.||=+.|.+....... .-|-|.+ +|. ..++.+++|.+.++
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~------------~~FgL~~~~~~~~~~wLd~~~~l~~q~~ 67 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREV------------WFFGLQYQDTKGFSTWLKLNKKVTAQDV 67 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCG------------GGEEEEEEBTTSCEEECCSSSBGGGSCB
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCc------------ceeEEEEECCCCceeecccccCHHhhcc
Confidence 47888888888 5789999999999999999998753321 2345554 232 23566677777665
Q ss_pred cC
Q 048546 121 RD 122 (125)
Q Consensus 121 kd 122 (125)
+.
T Consensus 68 ~~ 69 (294)
T 1ef1_A 68 RK 69 (294)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 128
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=86.98 E-value=2.4 Score=29.05 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=34.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCc
Q 048546 55 GSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICEN 112 (125)
Q Consensus 55 g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~ 112 (125)
++...|.|..+.||..||++|+++..-.+ .+.-|+|+|+.+.-|.
T Consensus 23 a~~h~v~I~~~etv~~~ke~V~eqTgIp~-------------~~Q~LL~eg~~l~l~p 67 (94)
T 4efo_A 23 MTAHKIYIHSYNTATIFHELVYKQTKIIS-------------SNQELIYEGRRLVLEP 67 (94)
T ss_dssp TEEEEEEEETTCBHHHHHHHHHHHHCCCG-------------GGEEEEETTEEECCCT
T ss_pred ceEEEEEeccchHHHHHHHHHHHHhCCCH-------------HHHHHHhCCCccccCC
Confidence 34467888899999999999999875444 4557999997764443
No 129
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=86.44 E-value=3.5 Score=32.99 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=43.3
Q ss_pred cccceeeeecCCCCCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 29 GGFSRKNFSYNKLPEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 29 ~~~~~~~~~~~~~~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
++.+..+++|+ .+.+.+.|.-.||+...|.|+.++|+.||=+.|.++..
T Consensus 72 ~~~~~~~l~~~---~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~ 120 (371)
T 3ivf_A 72 MLRNGDTMEYR---KKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIG 120 (371)
T ss_dssp TCCTTCEEEEE---ECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTT
T ss_pred CCCCCceeecc---CceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcC
Confidence 67778888888 35689999999999999999999999999999999864
No 130
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=85.93 E-value=3.3 Score=27.75 Aligned_cols=38 Identities=11% Similarity=0.054 Sum_probs=32.1
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMP 83 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~ 83 (125)
..|+|.|.-. -.+.|.|+.+++..+|...|.++++..+
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~ 41 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRL 41 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCG
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 4589999766 5788999999999999999999986543
No 131
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=84.99 E-value=2.6 Score=29.16 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=33.0
Q ss_pred CCCCeEEEEEccC-------CcEEEEEeCCCCcHHHHHHHHHHHhcC
Q 048546 42 PEQPLKLSVRKLD-------GSCFDIEVMKTATIAELRQAVEAAFSH 81 (125)
Q Consensus 42 ~~~aMkltV~k~~-------g~~~~V~V~~~ATV~dLK~aI~~~~~~ 81 (125)
|.++|+|.|.-.+ +..+.+.|+.+.+..||...|.+++..
T Consensus 2 ~~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~ 48 (98)
T 1q1o_A 2 PLGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISN 48 (98)
T ss_dssp CSSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcC
Confidence 6678999996443 446889999999999999999999863
No 132
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=83.98 E-value=2.2 Score=26.29 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=33.0
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
|+|+| +|+.+ +++..+||.||.+.+.. .+ +......+|+-+ . .....++-+++||+
T Consensus 1 m~i~v---Ng~~~--~~~~~~tv~~ll~~l~~----~~-------------~~v~vavN~~~v-~-~~~~~~~~L~~gD~ 56 (66)
T 1f0z_A 1 MQILF---NDQAM--QCAAGQTVHELLEQLDQ----RQ-------------AGAALAINQQIV-P-REQWAQHIVQDGDQ 56 (66)
T ss_dssp CCEEE---SSCEE--CCCTTCCHHHHHHHHTC----CC-------------SSEEEEETTEEE-C-HHHHTTCCCCTTEE
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHHcCC----CC-------------CCEEEEECCEEC-C-chhcCCcCCCCCCE
Confidence 45555 77764 55788999999987732 11 234455666333 2 22333455777773
No 133
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=83.43 E-value=2.4 Score=31.14 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=27.0
Q ss_pred CeEEEEEccCC------cEEEEEeCCCCcHHHHHHHHHHHh
Q 048546 45 PLKLSVRKLDG------SCFDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 45 aMkltV~k~~g------~~~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
.|+|.|.-.+| ..++|.|-.-.||.++|+.|-..+
T Consensus 24 ~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDav 64 (138)
T 2r2o_A 24 PLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQL 64 (138)
T ss_dssp EEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHH
T ss_pred EEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHH
Confidence 67887755433 458999998999999999888864
No 134
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=82.96 E-value=2.1 Score=27.54 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 56 SCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 56 ~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
....++++..+||.||.+++...+.
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p 42 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHP 42 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCc
Confidence 4567888888999999999988754
No 135
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=82.33 E-value=3.6 Score=27.92 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=32.2
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
++|||.+ --++.-|.+-||.+.+..||+..|....+
T Consensus 11 ~~~KVK~-yy~DDIiAIrvP~di~~~~L~dKi~~RLk 46 (85)
T 1ip9_A 11 KTTKIKF-YYKDDIFALMLKGDTTYKELRSKIAPRID 46 (85)
T ss_dssp CCEEEEE-CBTTCCEEEEECSCCCHHHHHHHHHHHHT
T ss_pred CceEEEE-EecCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4799999 67778899999999999999999999875
No 136
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=81.46 E-value=1.9 Score=27.82 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=21.1
Q ss_pred eEEEEEccCCcE-EEEEeCCCCcHHHHHHHH
Q 048546 46 LKLSVRKLDGSC-FDIEVMKTATIAELRQAV 75 (125)
Q Consensus 46 MkltV~k~~g~~-~~V~V~~~ATV~dLK~aI 75 (125)
|+|+| +.+|.. -.++++..+||+||=+.+
T Consensus 1 M~v~V-kl~g~~~~~~ev~~g~Tv~dLL~~L 30 (74)
T 2l32_A 1 MNVTV-EVVGEETSEVAVDDDGTYADLVRAV 30 (74)
T ss_dssp CEEEE-ECSSSSEEEEECSTTCSHHHHHHTT
T ss_pred CEEEE-EEeCccceeEEcCCCCcHHHHHHHc
Confidence 78888 444554 457899999999986543
No 137
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=81.09 E-value=2.6 Score=33.02 Aligned_cols=42 Identities=19% Similarity=0.127 Sum_probs=34.0
Q ss_pred CCCCCC-CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 39 NKLPEQ-PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 39 ~~~~~~-aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
||.|.. .|.+.|.-.||+...++|+..+|+.||=..|.++..
T Consensus 10 ~~~~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~ 52 (296)
T 3qij_A 10 GRENLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLN 52 (296)
T ss_dssp -------CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHT
T ss_pred cCCCCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcC
Confidence 455444 699999999999999999999999999999999875
No 138
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=80.40 E-value=7.7 Score=27.56 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=26.0
Q ss_pred CeEEEEEccC---CcEEEEEeCCCCcHHHHHHHHHHHh
Q 048546 45 PLKLSVRKLD---GSCFDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 45 aMkltV~k~~---g~~~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
.|+|+|.-.+ ...++|.|-.-.||.+.|+.|-..+
T Consensus 13 ~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~v 50 (117)
T 4e74_A 13 TLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAI 50 (117)
T ss_dssp EEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHH
T ss_pred EEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHH
Confidence 5677764432 3458888888899999999888764
No 139
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=77.35 E-value=15 Score=26.44 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=22.3
Q ss_pred cCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 048546 53 LDGSCFDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 53 ~~g~~~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
.++..++|.|-.-.||.+.|+.|-..+
T Consensus 14 ~~~~~i~VkVLdCDTItQvKeKiLd~v 40 (127)
T 3h6n_A 14 CGMDSLSVRAMDTDTLTQVKEKILEAF 40 (127)
T ss_dssp SCCCCEEEEEETTSBHHHHHHHHHHHH
T ss_pred CCCCceeeeeeccCchhhhhHHHHHHH
Confidence 345668899988899999999888865
No 140
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=75.64 E-value=7.7 Score=27.16 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=33.8
Q ss_pred CCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCC
Q 048546 42 PEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHM 82 (125)
Q Consensus 42 ~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~ 82 (125)
+++.+.|.+.--+|--+.+.|+.+||+.|+|+.+-+..+.+
T Consensus 16 ~~~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~ 56 (108)
T 2v1y_A 16 MPPRILVECLLPNGMIVTLECLREATLITIKHELFKEARKY 56 (108)
T ss_dssp CCSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGS
T ss_pred CCCcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhC
Confidence 45678888888899999999999999999999777754433
No 141
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=75.38 E-value=3.7 Score=25.70 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=14.5
Q ss_pred EEeCCCCcHHHHHHHHHHH
Q 048546 60 IEVMKTATIAELRQAVEAA 78 (125)
Q Consensus 60 V~V~~~ATV~dLK~aI~~~ 78 (125)
+++ ..+||.||.+++...
T Consensus 16 ~e~-~~~tv~~ll~~L~~~ 33 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEK 33 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTC
T ss_pred Eee-CCCcHHHHHHHHHHC
Confidence 556 578999999999863
No 142
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=75.00 E-value=14 Score=32.05 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=47.2
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeec---C-eeeccCcchhhhcC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYN---G-QKLICENDNIKYYG 119 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~---g-~KLl~D~~tL~dyG 119 (125)
..|.+.|.-.|| .+.|.|+.++|+.||=..|......... .-|.|.|. | ...++.+++|.+.+
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~------------~~FGL~~~d~~~~~~WLd~~k~i~~q~ 69 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREV------------WFFGLQYTDSKGDLTWIKLYKKVMQQD 69 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCG------------GGEEEEEEBTTSCEEECCTTSBGGGSC
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCc------------cceeEEEEecCcchhHhhccccHHHhc
Confidence 568899989998 6789999999999999999998753221 23455442 2 23456667777766
Q ss_pred CcCC
Q 048546 120 IRDG 123 (125)
Q Consensus 120 IkdG 123 (125)
++.+
T Consensus 70 ~~~~ 73 (575)
T 2i1j_A 70 VKKE 73 (575)
T ss_dssp BCCC
T ss_pred ccCC
Confidence 5543
No 143
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=71.38 E-value=16 Score=31.21 Aligned_cols=75 Identities=12% Similarity=0.104 Sum_probs=46.5
Q ss_pred eeecCCCCC--------CCeEEEEEccCCc--EEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeec
Q 048546 35 NFSYNKLPE--------QPLKLSVRKLDGS--CFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYN 104 (125)
Q Consensus 35 ~~~~~~~~~--------~aMkltV~k~~g~--~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~ 104 (125)
.|.|-.|+- ..|+|+......+ .+.|-|+.++||.||-++++++.... +.+.++| ..+-+++
T Consensus 321 ~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l~vpK~gtV~Dll~~l~k~~~~~-~~~~~~l-------Rl~ev~~ 392 (530)
T 2ylm_A 321 KLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELG-EKASGKL-------RLLEIVS 392 (530)
T ss_dssp EEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEECCBTTCBHHHHHHHHHTTCCCC-TTCCCCE-------EEEEEET
T ss_pred eEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEEEcCCCCCHHHHHHHHHHhcCCC-cCCcccE-------EEEEEEC
Confidence 466655542 3589988744333 36777899999999999999876533 2222222 2234456
Q ss_pred Ce--eeccCcchhhh
Q 048546 105 GQ--KLICENDNIKY 117 (125)
Q Consensus 105 g~--KLl~D~~tL~d 117 (125)
++ ++.+++.+|..
T Consensus 393 ~ki~ki~~~~~~i~~ 407 (530)
T 2ylm_A 393 YKIIGVHQEDELLEC 407 (530)
T ss_dssp TEEEEEECTTSBGGG
T ss_pred CEEEEecCCCccccc
Confidence 64 55666666654
No 144
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=70.20 E-value=5.6 Score=29.05 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=25.1
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHH
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQA 74 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~a 74 (125)
+.|.+++ +.||+.+.|+|+++.||.|.=..
T Consensus 8 ~~m~i~~-~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 8 QLMRISA-TINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp CCEEEEE-EETTEEEEEEECTTSBHHHHHHH
T ss_pred CcceEEE-EECCEEEEEecCCCCcHHHHHHh
Confidence 6788887 78999999999999999886543
No 145
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=69.80 E-value=2 Score=27.90 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=16.4
Q ss_pred EEEeCCCCcHHHHHHHHHHHhc
Q 048546 59 DIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 59 ~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
.|++ ..+||.||.+++...+.
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p 40 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYS 40 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHST
T ss_pred EEec-CCCCHHHHHHHHHHHCh
Confidence 4664 46899999999998753
No 146
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=69.39 E-value=5 Score=25.95 Aligned_cols=57 Identities=26% Similarity=0.401 Sum_probs=33.0
Q ss_pred eEEEEEccCCcEEEEEeC--CCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCC
Q 048546 46 LKLSVRKLDGSCFDIEVM--KTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDG 123 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~--~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdG 123 (125)
|+|+| +|+.+ +++ ..+||.||-+.+.-. .+ +...+..+|+-+ ......++-++||
T Consensus 1 M~I~v---NGe~~--e~~~~~~~Tl~~LL~~l~~~---~~-------------~~vAVavNg~iV--pr~~~~~~~L~dG 57 (78)
T 2k5p_A 1 MNLTV---NGKPS--TVDGAESLNVTELLSALKVA---QA-------------EYVTVELNGEVL--EREAFDATTVKDG 57 (78)
T ss_dssp CEEEE---TTEEE--ECSSCSCEEHHHHHHHHTCS---CT-------------TTCCEEETTEEC--CTTHHHHCEECSS
T ss_pred CEEEE---CCEEE--EcCCCCCCcHHHHHHHcCCC---CC-------------CcEEEEECCEEC--ChHHcCcccCCCC
Confidence 66666 78764 456 778999998765321 01 123356667433 2334555566776
Q ss_pred CC
Q 048546 124 DQ 125 (125)
Q Consensus 124 d~ 125 (125)
|.
T Consensus 58 D~ 59 (78)
T 2k5p_A 58 DA 59 (78)
T ss_dssp BC
T ss_pred CE
Confidence 63
No 147
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=68.96 E-value=13 Score=27.27 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=46.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhcCCCCCCC----Ccccc-----cccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 57 CFDIEVMKTATIAELRQAVEAAFSHMPKTGP----GKISW-----PHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 57 ~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~----~~IsW-----~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
++.|=.=.+||+.||=..|.......+..|. +.|+. +|+=+.+-.++.|.+-.+|++||.+.+..-||
T Consensus 55 ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGD 131 (143)
T 4a6q_A 55 ELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGD 131 (143)
T ss_dssp CEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTC
T ss_pred eeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCC
Confidence 3444457799999999999997654443221 11111 23334556667777778899999999998887
No 148
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=66.67 E-value=29 Score=31.14 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=25.8
Q ss_pred CeEEEEEccCC------cEEEEEeCCCCcHHHHHHHHHHH
Q 048546 45 PLKLSVRKLDG------SCFDIEVMKTATIAELRQAVEAA 78 (125)
Q Consensus 45 aMkltV~k~~g------~~~~V~V~~~ATV~dLK~aI~~~ 78 (125)
.|+|+|.-.+| ..++|.|-.-.||.++|+.|-.+
T Consensus 257 ~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDa 296 (644)
T 3hm6_X 257 PLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQ 296 (644)
T ss_dssp EEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHH
T ss_pred eEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHH
Confidence 56888765443 45889998889999999988865
No 149
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=65.25 E-value=29 Score=31.04 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=27.4
Q ss_pred CeEEEEEccC---CcEEEEEeCCCCcHHHHHHHHHHHh
Q 048546 45 PLKLSVRKLD---GSCFDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 45 aMkltV~k~~---g~~~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
.|+|.|.-.+ ...++|.|-.-.||.++|+.|-.++
T Consensus 233 ~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdav 270 (627)
T 3ig3_A 233 TLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTV 270 (627)
T ss_dssp EEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHH
T ss_pred eEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHH
Confidence 5788886543 3568999988999999999888764
No 150
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=62.88 E-value=19 Score=23.57 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=19.6
Q ss_pred cEEEEEeC--CCCcHHHHHHHHHHHh
Q 048546 56 SCFDIEVM--KTATIAELRQAVEAAF 79 (125)
Q Consensus 56 ~~~~V~V~--~~ATV~dLK~aI~~~~ 79 (125)
....++++ ..+||+||.+.+.+.+
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHC
Confidence 44677777 6799999999998875
No 151
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=62.70 E-value=40 Score=24.22 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=26.2
Q ss_pred CeEEEEEc---cC------CcEEEEEeCCCCcHHHHHHHHHHHh
Q 048546 45 PLKLSVRK---LD------GSCFDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 45 aMkltV~k---~~------g~~~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
+++|.|.. .. ...++|.|-.-.||.++|+.|-..+
T Consensus 19 tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdav 62 (126)
T 3kuz_A 19 TVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAF 62 (126)
T ss_dssp EEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHH
T ss_pred EEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHH
Confidence 57777765 22 2458899988899999999877653
No 152
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=60.45 E-value=6 Score=25.20 Aligned_cols=54 Identities=19% Similarity=0.397 Sum_probs=31.3
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
|+|+| +|+.+++ ...||.||-+.+.- .+ +...+..+|+-+ ......++-+++||
T Consensus 1 M~I~v---NG~~~e~---~~~Tl~~LL~~l~~----~~-------------~~vAV~vNg~iV--pr~~~~~~~L~dGD 54 (73)
T 2kl0_A 1 MLVTI---NGEQREV---QSASVAALMTELDC----TG-------------GHFAVALNYDVV--PRGKWDETPVTAGD 54 (73)
T ss_dssp CCEEE---TTEEECC---CCSBHHHHHHHTTC----CS-------------SSCEEEESSSEE--CHHHHTTCBCCTTC
T ss_pred CEEEE---CCEEEEc---CCCcHHHHHHHcCC----CC-------------CcEEEEECCEEC--ChHHcCcccCCCCC
Confidence 55655 7876554 56899999775432 22 223456667443 23344555677776
No 153
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=59.12 E-value=21 Score=24.51 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=32.6
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
+.+-|.|-..||+...|.|+.+.|+.|+=+.+..+.+
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~ 44 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAH 44 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSS
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcC
Confidence 4567888889999999999999999999999988764
No 154
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=58.64 E-value=12 Score=23.00 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=19.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHh
Q 048546 56 SCFDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 56 ~~~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
....++++..+||.||.+.+...+
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~ 39 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERY 39 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC
Confidence 345677788899999999988764
No 155
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=58.04 E-value=14 Score=22.30 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=22.3
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHH
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEA 77 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~ 77 (125)
|.+.|.--+|+. .+++..+|+.||-+.+..
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~ 30 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHS 30 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCS
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhh
Confidence 566774447876 566889999999888744
No 156
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=56.59 E-value=23 Score=29.86 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=34.7
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSH 81 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~ 81 (125)
+.|.+.|.-.||+...|.|+..+|+.||=+.|.++...
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL 252 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAM 252 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCC
Confidence 56999999999999999999999999999999998753
No 157
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=56.17 E-value=39 Score=29.66 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=35.0
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcC
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSH 81 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~ 81 (125)
+.|.+.|.-.||+...|.|+..+|+.||=..|..+...
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL 299 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISL 299 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTC
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCC
Confidence 57999999999999999999999999999999998753
No 158
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=55.22 E-value=26 Score=24.08 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=35.6
Q ss_pred eeeccccceeeeecCCCCCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHH
Q 048546 25 SLMIGGFSRKNFSYNKLPEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAA 78 (125)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~ 78 (125)
++++.+++-..-.-| .+-| +.|--.+|-.|.|+||.+--+..-|++|++-
T Consensus 20 ~ln~~i~syteslag---krem-viisf~ngatfqvevpgsqh~~sqk~~~erm 69 (104)
T 3chb_D 20 TLNDKIFSYTESLAG---KREM-AIITFKNGATFQVEVPGSQHIDSQKKAIERM 69 (104)
T ss_dssp EEEECCSEEEEECST---TCCE-EEEECTTCCEEEECCCCTTSCHHHHHHHHHH
T ss_pred ehhHHHHHHHHhhcC---ceeE-EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 344455554444445 1335 4455788999999999999999999999985
No 159
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=53.73 E-value=8.3 Score=26.34 Aligned_cols=64 Identities=17% Similarity=0.172 Sum_probs=36.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHHHhc-CCCCCCCCccccccc--ccceEEeecCeeec------cCcchhhhcCCcCCCC
Q 048546 57 CFDIEVMKTATIAELRQAVEAAFS-HMPKTGPGKISWPHV--WGHFCLCYNGQKLI------CENDNIKYYGIRDGDQ 125 (125)
Q Consensus 57 ~~~V~V~~~ATV~dLK~aI~~~~~-~~~~~g~~~IsW~~V--W~q~~L~~~g~KLl------~D~~tL~dyGIkdGd~ 125 (125)
..+++|+.++|..||=+.+..... +...++. .+. =+..-|...+-+.+ +-+++|.+.|+.||+|
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSl-----tt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~e 78 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAI-----TATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQE 78 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEE-----EEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCee-----eeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCE
Confidence 346888999999999999988432 2221111 000 01222333321111 2357799999999985
No 160
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=49.86 E-value=21 Score=26.26 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=21.5
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhc
Q 048546 58 FDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 58 ~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
-.|+|+.++|..+|=.+|+.+|.
T Consensus 24 Rri~Vp~~~TL~~LH~vIq~afg 46 (188)
T 2i1s_A 24 RRIQVPENYTFLDLHKAIQAVMD 46 (188)
T ss_dssp EEEEEETTCBHHHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHHhC
Confidence 48999999999999999999986
No 161
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=48.98 E-value=10 Score=23.96 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=16.3
Q ss_pred EEeCCCCcHHHHHHHHHHHh
Q 048546 60 IEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 60 V~V~~~ATV~dLK~aI~~~~ 79 (125)
++++..+||.||.+++...+
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~ 38 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEY 38 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHS
T ss_pred EEcCCCCcHHHHHHHHHHHC
Confidence 45666799999999998864
No 162
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=46.91 E-value=74 Score=22.54 Aligned_cols=62 Identities=15% Similarity=0.264 Sum_probs=42.3
Q ss_pred CCeEEEEEccCCcE-E------EEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhh
Q 048546 44 QPLKLSVRKLDGSC-F------DIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIK 116 (125)
Q Consensus 44 ~aMkltV~k~~g~~-~------~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~ 116 (125)
..+-|.|.+.+++. . -.-|+.+.||+++-..|.+..+..++ +.+.|.|-++.+-.-+.++.
T Consensus 34 ~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~------------~alFl~~vn~~~p~~~~~m~ 101 (130)
T 2zjd_A 34 TKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNAN------------QAFFLLVNGHSMVSVSTPIS 101 (130)
T ss_dssp TEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTT------------CCEEEEETTTEECCTTSBHH
T ss_pred CceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCC------------ceEEEEEECCccCCccchHH
Confidence 66777777665544 1 34579999999999999998865554 34555455545666666665
Q ss_pred h
Q 048546 117 Y 117 (125)
Q Consensus 117 d 117 (125)
+
T Consensus 102 ~ 102 (130)
T 2zjd_A 102 E 102 (130)
T ss_dssp H
T ss_pred H
Confidence 4
No 163
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=46.23 E-value=26 Score=24.03 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=22.7
Q ss_pred CCeEEEEEccCCcE--EEEEeCCCCcHHHHHHHHHHHhc
Q 048546 44 QPLKLSVRKLDGSC--FDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 44 ~aMkltV~k~~g~~--~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
++|++++.+.++.. +.|+|+ -.++++++.+.++
T Consensus 2 ~~M~v~~e~~~~~~~~l~v~v~----~~~~~~~~~~~~~ 36 (121)
T 1p9y_A 2 SHMQVSVETTQGLGRRVTITIA----ADSIETAVKSELV 36 (121)
T ss_dssp --CEEEEEECSTTEEEEEEEEC----HHHHHHHHHHHHH
T ss_pred CcceEEEEECCCcEEEEEEEEC----HHHHHHHHHHHHH
Confidence 67999999999877 455555 4677777777654
No 164
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=46.14 E-value=46 Score=22.77 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=15.2
Q ss_pred CcHHHHHHHHHHHhcCCC
Q 048546 66 ATIAELRQAVEAAFSHMP 83 (125)
Q Consensus 66 ATV~dLK~aI~~~~~~~~ 83 (125)
.|..+|+..|++.|+...
T Consensus 42 ~s~~~L~~~V~~lFp~l~ 59 (102)
T 2kkc_A 42 GPCERLLSRVAVLFPALR 59 (102)
T ss_dssp CHHHHHHHHHHHHCTTSC
T ss_pred ccHHHHHHHHHHHccccC
Confidence 389999999999987554
No 165
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=45.72 E-value=23 Score=23.59 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 55 GSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 55 g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
...+.+.|+.+||=-|.|+||++.|.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~ 47 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYD 47 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhC
Confidence 45678899999999999999999986
No 166
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=45.17 E-value=39 Score=23.17 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=25.0
Q ss_pred CeEEEEEccC------C--cEEEEEeC---CCCcHHHHHHHHHHHh
Q 048546 45 PLKLSVRKLD------G--SCFDIEVM---KTATIAELRQAVEAAF 79 (125)
Q Consensus 45 aMkltV~k~~------g--~~~~V~V~---~~ATV~dLK~aI~~~~ 79 (125)
.|+|+|+-.. | +...|+++ ..+||.||-+.+.+.+
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~ 56 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL 56 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc
Confidence 4788875432 2 24568888 3379999999999876
No 167
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=44.73 E-value=7.9 Score=26.67 Aligned_cols=36 Identities=17% Similarity=0.422 Sum_probs=19.3
Q ss_pred EEEEeCCCCcHHHHHHHHHH---HhcCCCCCCCCccccccccc
Q 048546 58 FDIEVMKTATIAELRQAVEA---AFSHMPKTGPGKISWPHVWG 97 (125)
Q Consensus 58 ~~V~V~~~ATV~dLK~aI~~---~~~~~~~~g~~~IsW~~VW~ 97 (125)
++|.+|.+.+-.++-...++ ......+.|. |+|+||
T Consensus 7 m~V~~P~~~~~~~~~~~~a~Eka~a~eLq~~G~----~~~lWR 45 (96)
T 1mli_A 7 MTVKLPVDMDPAKATQLKADEKELAQRLQREGT----WRHLWR 45 (96)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHHHHHhCCe----eEEEEE
Confidence 56777877655554333322 2222223343 888887
No 168
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=44.67 E-value=55 Score=22.24 Aligned_cols=61 Identities=10% Similarity=0.092 Sum_probs=38.4
Q ss_pred CCeEEEEEccCCcEE------EEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhh
Q 048546 44 QPLKLSVRKLDGSCF------DIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKY 117 (125)
Q Consensus 44 ~aMkltV~k~~g~~~------~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~d 117 (125)
..+-|.|.+..++.. -..|+.+.||+++...|.+..+..+. +.+.|.-++ .+..-+.++.+
T Consensus 26 ~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~------------~alfl~vn~-~~p~~~~~m~~ 92 (110)
T 2r2q_A 26 DRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPE------------DALFFFVNN-TIPPTSATMGQ 92 (110)
T ss_dssp TEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTT------------SCCEEEBTT-BCCCTTSBHHH
T ss_pred CceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCC------------CcEEEEECC-EecCccChHHH
Confidence 556677766654432 24678999999999999988765443 233444444 45555555543
No 169
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=44.57 E-value=29 Score=23.36 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=24.0
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhcCC
Q 048546 55 GSCFDIEVMKTATIAELRQAVEAAFSHM 82 (125)
Q Consensus 55 g~~~~V~V~~~ATV~dLK~aI~~~~~~~ 82 (125)
...+.+.|+.+||=-|.|+||++.|...
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~Vk 54 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVE 54 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCc
Confidence 3567889999999999999999998633
No 170
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=44.29 E-value=25 Score=25.85 Aligned_cols=27 Identities=7% Similarity=0.190 Sum_probs=21.8
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHH
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQ 73 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~ 73 (125)
|+|++ +.||+.+.|+|+++.|+.|+=.
T Consensus 4 ~~i~~-~vNG~~~~~~v~~~~tLLd~LR 30 (166)
T 1n62_A 4 AHIEL-TINGHPVEALVEPRTLLIHFIR 30 (166)
T ss_dssp EEEEE-EETTEEEEEEECTTCBHHHHHH
T ss_pred ceEEE-EECCEEEEEecCCCCcHHHHHH
Confidence 55665 6699999999999999998544
No 171
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=44.03 E-value=24 Score=23.87 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.6
Q ss_pred EEEEeCCCCcHHHHHHHHHHHhc
Q 048546 58 FDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 58 ~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
+.+.|+.+||=-|.|+||++.|.
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~ 47 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFG 47 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhC
Confidence 78889999999999999999986
No 172
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.41 E-value=36 Score=22.64 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 55 GSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 55 g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
...+.+.|+.+||=-|.|+||++.|.
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~ 48 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFN 48 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTT
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcC
Confidence 35678889999999999999999986
No 173
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=42.31 E-value=11 Score=27.66 Aligned_cols=31 Identities=13% Similarity=0.392 Sum_probs=25.3
Q ss_pred CCeEEEEEccCCcEEEEEeCCCC---cHHHHHHHH
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTA---TIAELRQAV 75 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~A---TV~dLK~aI 75 (125)
+.|+|.+ +.+|..+.+++.+++ |+.+|.+++
T Consensus 28 ~~~~I~i-~~~~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 28 VEMRLRI-RFESAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp SCCCEEE-EETTEEEEECCCTTSCHHHHHHHHHTC
T ss_pred CCeEEEE-EECCEEEEEEEcCCCCHHHHHHHHHhC
Confidence 4688888 557788999999999 999998864
No 174
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=41.81 E-value=27 Score=25.57 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=22.1
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHH
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELR 72 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK 72 (125)
|+|++ +.||+.+.|+|+++.|+.|+=
T Consensus 4 ~~i~~-~vNG~~~~v~v~p~~tLLd~L 29 (160)
T 3hrd_D 4 ITINL-NLNGEARSIVTEPNKRLLDLL 29 (160)
T ss_dssp EEEEE-EETTEEEEEEECSSSBHHHHH
T ss_pred ceEEE-EECCEEEEEecCCCCCHHHHH
Confidence 66776 779999999999999999853
No 175
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=41.74 E-value=23 Score=27.64 Aligned_cols=29 Identities=21% Similarity=0.392 Sum_probs=25.7
Q ss_pred CCeEEEEEccCCcEEEEEeCC--CCcHHHHH
Q 048546 44 QPLKLSVRKLDGSCFDIEVMK--TATIAELR 72 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~--~ATV~dLK 72 (125)
+-++|.|--.||+...|+|.. ++|+.||-
T Consensus 4 ~~~~i~V~l~dg~~~~~~i~~~~~tt~~el~ 34 (322)
T 4dxa_B 4 EFEKVRIYRMDGSYRSVELKHGNNTTVQQIM 34 (322)
T ss_dssp -CCEEEEECTTSCEEEEECTTGGGCCHHHHH
T ss_pred CceEEEEEEECCcEEEEEEcCCCCCcHHHHH
Confidence 457899999999999999998 89999994
No 176
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=41.16 E-value=54 Score=24.34 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=31.2
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
.+.|.|-..||....|.|+.+.|+.||-+.+..+++
T Consensus 34 k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~ 69 (291)
T 3tca_A 34 KLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTH 69 (291)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHC
T ss_pred ceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhC
Confidence 356777789999999999999999999998888765
No 177
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=41.08 E-value=30 Score=25.32 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=21.4
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHH
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQ 73 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~ 73 (125)
|.|++ +.||+.+.|+|+++.|+.|+=.
T Consensus 4 ~~i~~-~vNG~~~~~~v~~~~tLLd~LR 30 (163)
T 1ffv_A 4 KIITV-NVNGKAQEKAVEPRTLLIHFLR 30 (163)
T ss_dssp EEEEE-EETTEEEEEEECTTCBHHHHHH
T ss_pred ceEEE-EECCEEEEEecCCCCcHHHHHH
Confidence 45555 5699999999999999998543
No 178
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=40.07 E-value=97 Score=21.90 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=30.4
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcC
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSH 81 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~ 81 (125)
-+-..|-..|-+.+.|.++-++||.|++.++..+...
T Consensus 9 ei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~ 45 (120)
T 2dhz_A 9 EIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQY 45 (120)
T ss_dssp CEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTT
T ss_pred cEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhcc
Confidence 3445566678888889999999999999999998853
No 179
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=40.06 E-value=30 Score=20.81 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=30.3
Q ss_pred ccCCcEEEEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCCC
Q 048546 52 KLDGSCFDIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGDQ 125 (125)
Q Consensus 52 k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd~ 125 (125)
..+|+.++ + ..+||.||.+.+.. .+ +......+|+-+ . ...-.++-+++||+
T Consensus 3 ~vNg~~~~--~-~~~tv~~ll~~l~~----~~-------------~~v~vavN~~~v-~-~~~~~~~~L~dgD~ 54 (64)
T 2cu3_A 3 WLNGEPRP--L-EGKTLKEVLEEMGV----EL-------------KGVAVLLNEEAF-L-GLEVPDRPLRDGDV 54 (64)
T ss_dssp EETTEEEC--C-TTCCHHHHHHHHTB----CG-------------GGEEEEETTEEE-E-GGGCCCCCCCTTCE
T ss_pred EECCEEEE--c-CCCcHHHHHHHcCC----CC-------------CcEEEEECCEEC-C-ccccCCcCCCCCCE
Confidence 34787754 4 57899999987742 11 234455666443 2 22233445777774
No 180
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=38.83 E-value=88 Score=21.77 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.9
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 55 GSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 55 g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
|.+.-++++..-+.+||.+.+...|.
T Consensus 17 GEkRIi~f~RPv~f~eL~~Kv~~~fG 42 (103)
T 2cu1_A 17 GEKRILQFPRPVKLEDLRSKAKIAFG 42 (103)
T ss_dssp TEEEEEEEESSCCHHHHHHHHHHHHS
T ss_pred CeEEEEeccCCccHHHHHHHHHHHhC
Confidence 88888999999999999999999885
No 181
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=38.14 E-value=40 Score=22.22 Aligned_cols=25 Identities=20% Similarity=0.260 Sum_probs=22.1
Q ss_pred EEEEEccCCcEEEEEeCCCCcHHHH
Q 048546 47 KLSVRKLDGSCFDIEVMKTATIAEL 71 (125)
Q Consensus 47 kltV~k~~g~~~~V~V~~~ATV~dL 71 (125)
+|++...+|....|+++...|+.|.
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a 26 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEA 26 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHH
Confidence 6888889999999999999999873
No 182
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=38.12 E-value=47 Score=23.85 Aligned_cols=54 Identities=9% Similarity=0.123 Sum_probs=30.6
Q ss_pred CCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhhcCCcCCC
Q 048546 65 TATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYYGIRDGD 124 (125)
Q Consensus 65 ~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dyGIkdGd 124 (125)
.||..||=+.+..++.+..+ ||-.++ .+.-|+|+--==..-.++|++.||++|.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~e-----iSV~~~-~~~rLLyD~DfDDnl~k~L~dLgv~~gs 72 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQD-----ISLLDA-SNQRLLFDYDFEDLNDRTLSEINLGNGS 72 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSS-----EEEEET-TTTEEEEETTBCTTTTSBTTTTTCCTTC
T ss_pred ccCHHHHHHHHHHhcCCCCc-----EEEEec-CCCCeEeCCCccccccCcHHHcCcCCCc
Confidence 49999999988877754322 111100 0112444431101224899999999985
No 183
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=38.12 E-value=34 Score=23.81 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=34.3
Q ss_pred eeccccceeeeecCCCCCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHH
Q 048546 26 LMIGGFSRKNFSYNKLPEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAA 78 (125)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~ 78 (125)
+++.+++-..-.-| .+-|- .|--.+|-.|.|+||.+--+..-|++|++-
T Consensus 20 ln~~i~syteslag---kremv-iisf~ngatfqvevpgsqh~~sqk~~~erm 68 (113)
T 1ltr_D 20 INDKILSYTESMAG---KREMV-IITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (113)
T ss_dssp EEEECSEEEEECST---TCCCE-EEECTTSCEEEECCCSTTSCSHHHHHHHHH
T ss_pred hhHHHHHHHHhhcC---ceeEE-EEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 44444444444444 13354 444788999999999999999999999985
No 184
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=38.10 E-value=43 Score=21.88 Aligned_cols=28 Identities=7% Similarity=0.170 Sum_probs=22.1
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHH
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAEL 71 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dL 71 (125)
..++|++...+|....|+++...|+.|.
T Consensus 5 ~m~~V~~~~~~g~~~~v~~~~g~tLL~a 32 (108)
T 2bt6_A 5 DKITVHFINRDGETLTTKGKIGDSLLDV 32 (108)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHH
T ss_pred ceEEEEEECCCCCEEEEEECCCChHHHH
Confidence 3468888767899778888888999763
No 185
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=37.41 E-value=20 Score=22.50 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=15.1
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHH
Q 048546 54 DGSCFDIEVMKTATIAELRQAVE 76 (125)
Q Consensus 54 ~g~~~~V~V~~~ATV~dLK~aI~ 76 (125)
++.. ++++..+||.||.+.+.
T Consensus 21 n~~~--~~~~~~~Tv~dLl~~L~ 41 (77)
T 1rws_A 21 IEKE--IEWREGMKVRDILRAVG 41 (77)
T ss_dssp CCCC--CCCCSSCCHHHHHHTTT
T ss_pred CCEE--EECCCCCcHHHHHHHhC
Confidence 4444 45677899999988664
No 186
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=37.38 E-value=41 Score=22.56 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 56 SCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 56 ~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
..+.+.|+.+||=-|.|+||++.|.
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~ 46 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFK 46 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhC
Confidence 5678899999999999999999986
No 187
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=36.50 E-value=35 Score=24.70 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=21.6
Q ss_pred EEEEEccCCcEEEEEeCCCCcHHHHHHHH
Q 048546 47 KLSVRKLDGSCFDIEVMKTATIAELRQAV 75 (125)
Q Consensus 47 kltV~k~~g~~~~V~V~~~ATV~dLK~aI 75 (125)
+|++ +.||+.+.|+|+++.|+.|+=...
T Consensus 4 ~i~~-~vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 4 ILRL-TLNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp EEEE-EETTEEEEEEEETTCBHHHHHHHT
T ss_pred eEEE-EECCEEEEEecCCcCcHHHHHHHc
Confidence 3444 569999999999999998865543
No 188
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=31.61 E-value=72 Score=21.17 Aligned_cols=37 Identities=14% Similarity=0.347 Sum_probs=22.0
Q ss_pred eeeeecCCCCCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHH
Q 048546 33 RKNFSYNKLPEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAA 78 (125)
Q Consensus 33 ~~~~~~~~~~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~ 78 (125)
.+..+|++.|...-+|.|..+ +.++|-.||++.+++.
T Consensus 16 ~~~~~~~~~p~~~~~l~VgnL---------p~~~te~dL~~~F~~~ 52 (111)
T 2jvr_A 16 PRGSHMSKLPAKRYRITMKNL---------PEGCSWQDLKDLAREN 52 (111)
T ss_dssp ---------CCCCEEEEEECS---------SCCCCHHHHHHHHHHH
T ss_pred ecchhcCCCCCCCCEEEEECC---------CCCCCHHHHHHHHHHh
Confidence 456788888888888888554 6678889999888764
No 189
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=31.47 E-value=68 Score=24.98 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=28.8
Q ss_pred CCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHH
Q 048546 42 PEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAA 78 (125)
Q Consensus 42 ~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~ 78 (125)
+.+.--|+|-..||....|.|+++.|+.||=+.+..+
T Consensus 5 ~~~~~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k 41 (256)
T 3hk0_A 5 AAAKQDVKVFSEDGTSKVVEILADMTARDLCQLLVYK 41 (256)
T ss_dssp ---CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHCC
T ss_pred CCCceEEEEEecCCcEEEEEECCCCCHHHHHHHHHHh
Confidence 3445566777799999999999999999998877765
No 190
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=31.17 E-value=1.3e+02 Score=21.05 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=23.3
Q ss_pred ceeeeecCCCCCCCeEEEEEcc--CC--cE-EEEEeCC-----------CCcHHHHHHHHHHHhcCCC
Q 048546 32 SRKNFSYNKLPEQPLKLSVRKL--DG--SC-FDIEVMK-----------TATIAELRQAVEAAFSHMP 83 (125)
Q Consensus 32 ~~~~~~~~~~~~~aMkltV~k~--~g--~~-~~V~V~~-----------~ATV~dLK~aI~~~~~~~~ 83 (125)
..-+++-+.||-..+.|.+.-. ++ .. -.+.++. ..|..+|+..|++.|+...
T Consensus 7 ~~~~~~~~~~~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~ 74 (117)
T 2ktr_A 7 NDGAYEGDELHMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR 74 (117)
T ss_dssp -------------CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC
T ss_pred CccceeccccccccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccC
Confidence 3445666667777766666332 11 12 1333331 1499999999999986544
No 191
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=31.12 E-value=99 Score=19.82 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=22.9
Q ss_pred CCeEEEEEccCCcEEEEEeCCCCcHHHHH
Q 048546 44 QPLKLSVRKLDGSCFDIEVMKTATIAELR 72 (125)
Q Consensus 44 ~aMkltV~k~~g~~~~V~V~~~ATV~dLK 72 (125)
...+|++...+|....|+++...|+.|.=
T Consensus 2 ~~~~v~~~~~~g~~~~~~~~~g~tlL~a~ 30 (103)
T 2wlb_A 2 TGIKVFFVTPEGREIMIEGNEGDSILDLA 30 (103)
T ss_dssp CCEEEEEECTTCCEEEEEECTTCBHHHHH
T ss_pred CceEEEEEeCCCCEEEEEECCCCHHHHHH
Confidence 45788886588977788889999998753
No 192
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=30.60 E-value=1.2e+02 Score=21.30 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=27.6
Q ss_pred CCeEEEEEccCCcEE------EEEeCCCCcHHHHHHHHHHHhcCCCC
Q 048546 44 QPLKLSVRKLDGSCF------DIEVMKTATIAELRQAVEAAFSHMPK 84 (125)
Q Consensus 44 ~aMkltV~k~~g~~~------~V~V~~~ATV~dLK~aI~~~~~~~~~ 84 (125)
..+=|.|.+.+++.. -.-|+.+.||+++...|.+.....++
T Consensus 35 ~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~ 81 (125)
T 3m95_A 35 DRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPE 81 (125)
T ss_dssp TEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTT
T ss_pred CeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCcc
Confidence 344555555544332 24579999999999999998765554
No 193
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=30.44 E-value=77 Score=21.17 Aligned_cols=22 Identities=5% Similarity=0.163 Sum_probs=16.6
Q ss_pred EEEeCC-CCcHHHHHHHHHHHhc
Q 048546 59 DIEVMK-TATIAELRQAVEAAFS 80 (125)
Q Consensus 59 ~V~V~~-~ATV~dLK~aI~~~~~ 80 (125)
.|.++. ..+|.|||++|..+-+
T Consensus 21 ~v~fdG~~Isv~dLKr~I~~~~k 43 (86)
T 2c7h_A 21 TVTFDGLHISLCDLKKQIMGREK 43 (86)
T ss_dssp EEEESSSEEEHHHHHHHHHHHHT
T ss_pred eEEEcCCEEEHHHHHHHHHHHhC
Confidence 555554 3799999999998754
No 194
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=30.40 E-value=64 Score=21.52 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=22.0
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
|++++.+.++....++|.- +-.++++++.+.++
T Consensus 1 M~v~~e~~~~~~~~l~v~v--~~~~~~~~~~~~~~ 33 (109)
T 2nsc_A 1 MEVKELERDKNRVVLEYVF--GAEEIAQAEDKAVR 33 (109)
T ss_dssp CEEEEEEEETTEEEEEEEC--CHHHHHHHHHHHHH
T ss_pred CceEEEEcCCCEEEEEEEE--CHHHHHHHHHHHHH
Confidence 7888888888774444433 45677777777654
No 195
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=30.14 E-value=74 Score=20.77 Aligned_cols=27 Identities=7% Similarity=0.069 Sum_probs=22.0
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHH
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAEL 71 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dL 71 (125)
.++|++...+|....|+++...|+.|.
T Consensus 5 m~~v~~~~~~g~~~~~~~~~g~tlL~a 31 (109)
T 2y5c_A 5 VVNVVFVDRSGQRIPVSGRVGDNVLHL 31 (109)
T ss_dssp EEEEEEECTTSCEEEEEEETTCBHHHH
T ss_pred cEEEEEEcCCCCEEEEEECCCCcHHHH
Confidence 457888778899888888999999774
No 196
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=29.98 E-value=43 Score=23.72 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=34.4
Q ss_pred eeeccccceeeeecCCCCCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHH
Q 048546 25 SLMIGGFSRKNFSYNKLPEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAA 78 (125)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~ 78 (125)
++++.+++-..-.-| .+-|- .|--.+|-.|.|+||.+--+..-|++|++-
T Consensus 19 ~ln~~i~syteslag---kremv-iisf~ngatfqvevpgsqh~~sqk~~~erm 68 (129)
T 1b44_D 19 TINDKILSYTESMAG---KREMV-IITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (129)
T ss_dssp EEEEECSEEEEECBT---TBCCE-EEECTTSCEEEECCCCTTSCSTHHHHHHHH
T ss_pred ehhHHHHHHHHhhcC---ceeEE-EEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 344444444444444 12344 444788999999999998898899999885
No 197
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=28.59 E-value=1e+02 Score=25.75 Aligned_cols=58 Identities=7% Similarity=0.137 Sum_probs=37.8
Q ss_pred EEEEeCCCCcHHHHHHHHHHH-----hcCC--------------CCCCCCcccccccccceEEeecCeeeccCcchhhhc
Q 048546 58 FDIEVMKTATIAELRQAVEAA-----FSHM--------------PKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKYY 118 (125)
Q Consensus 58 ~~V~V~~~ATV~dLK~aI~~~-----~~~~--------------~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~dy 118 (125)
+.|.|+.+.|+.|.=++.++. |... .+...+ ++||..+.+.+.+. .=..+|
T Consensus 315 ~~Vtv~~gssll~vLk~a~e~n~~F~F~~~e~~~G~fItSInG~~~~~~~--------~~YW~l~~~g~~~~--~G~~~y 384 (399)
T 2pmv_A 315 INVSVKSGSVLLVVLEEAQRKNPMFKFETTMTSWGLVVSSINNIAENVNH--------KTYWQFLSGVTPLN--EGVADY 384 (399)
T ss_dssp EEEESSSCSCHHHHHHHHHHSCCSCCEEEEEETTEEEEEEESSCBCCGGG--------TEEEEEEETTEECS--SCTTTC
T ss_pred eEEEecCCCCHHHHHHHHHHhCcCCceEEeecCCCceEEeECCCccCcCC--------CeeEEEEECCeecc--cchhhe
Confidence 689999999999988877765 2110 011113 57777777534332 357788
Q ss_pred CCcCCCC
Q 048546 119 GIRDGDQ 125 (125)
Q Consensus 119 GIkdGd~ 125 (125)
.++|||.
T Consensus 385 ~~~~gd~ 391 (399)
T 2pmv_A 385 IPFNHEH 391 (399)
T ss_dssp CCCTTCE
T ss_pred ecCCCCE
Confidence 9999973
No 198
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=28.36 E-value=96 Score=29.27 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=34.0
Q ss_pred CCCCeEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcCC
Q 048546 42 PEQPLKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSHM 82 (125)
Q Consensus 42 ~~~aMkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~~ 82 (125)
+++.+.|...--+|..+.++|+.++|+.++|+.+-+....+
T Consensus 48 ~~~~v~vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw~~A~~~ 88 (1092)
T 2y3a_A 48 SDGAISVDFLLPTGIYIQLEVPREATISYIKQMLWKQVHNY 88 (1092)
T ss_dssp CCSEEEEEEECTTCCEEEEEEETTCBHHHHHHHHHHHGGGS
T ss_pred CCCceEEEEECCCceEEEEEecCcccHHHHHHHHHHHHHhC
Confidence 34668888888889999999999999999999888864433
No 199
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=27.10 E-value=87 Score=19.91 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=22.3
Q ss_pred CeEEEEEccCCcEEEEEeCCCCcHHHHHH
Q 048546 45 PLKLSVRKLDGSCFDIEVMKTATIAELRQ 73 (125)
Q Consensus 45 aMkltV~k~~g~~~~V~V~~~ATV~dLK~ 73 (125)
.++|++...++....|+++...|+.|.=.
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~g~tlL~a~~ 32 (98)
T 1jq4_A 4 VHTITAVTEDGESLRFECRSDEDVITAAL 32 (98)
T ss_dssp EEEEEEEETTTEEEEEEEESCCTHHHHHH
T ss_pred cEEEEEEecCCCcEEEEeCCCChHHHHHH
Confidence 46788876677778888999999988543
No 200
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=26.38 E-value=1e+02 Score=19.72 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=23.7
Q ss_pred EEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 048546 47 KLSVRKLDGSCFDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 47 kltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
.|.|..-+|+. ++++..+|+.|+=.+|...+
T Consensus 7 ~i~v~tP~G~~--~~lp~GaT~~D~A~~Ih~~l 37 (78)
T 3hvz_A 7 EVFVFTPKGDV--ISLPIGSTVIDFAYAIHSAV 37 (78)
T ss_dssp EEEEECTTSCE--EEEETTCBHHHHHHHHCHHH
T ss_pred eEEEECCCCCE--EEecCCCCHHHHHHHhhhhh
Confidence 46776778887 45699999999988876543
No 201
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=25.64 E-value=1.2e+02 Score=23.98 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=28.8
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHHHHHHHHHh
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAELRQAVEAAF 79 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~ 79 (125)
+-|.|-..||+...|.|+++.|+.||=+.+..+.
T Consensus 32 ~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~ 65 (281)
T 4gmv_A 32 LVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKS 65 (281)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHS
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhc
Confidence 4577777899999999999999999988777664
No 202
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=25.22 E-value=1.8e+02 Score=20.55 Aligned_cols=72 Identities=18% Similarity=0.168 Sum_probs=45.3
Q ss_pred CCeEEEEEccCC-----cEEEEEeCCCCcHHHHHHHHHHH-hcCCCCCCCCcccccccccceEEeecCeeecc-Ccchhh
Q 048546 44 QPLKLSVRKLDG-----SCFDIEVMKTATIAELRQAVEAA-FSHMPKTGPGKISWPHVWGHFCLCYNGQKLIC-ENDNIK 116 (125)
Q Consensus 44 ~aMkltV~k~~g-----~~~~V~V~~~ATV~dLK~aI~~~-~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~-D~~tL~ 116 (125)
.++-|.| .=++ ..+.+-|+++.+.++|=+.+-.- +.+-| .-.+|.|.-| -|+ -+|+.... .+++|.
T Consensus 22 g~qLlYi-gWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hP--Dfa~idws~v---~W~-l~g~pftPD~~kSLa 94 (119)
T 3u52_E 22 GMQLLYV-YWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHP--DSAKADFLNA---EWL-LNDEPFTPKADASLK 94 (119)
T ss_dssp TCEEEEE-ECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTST--TGGGCCTTSS---EEE-ETTEEECCCTTSBTT
T ss_pred CCEEEEE-EecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCC--ccccCCcchh---eEE-ECCccCCCChhhhHH
Confidence 5666666 3333 23678889999999998766553 33223 3356777331 233 45666644 468999
Q ss_pred hcCCcC
Q 048546 117 YYGIRD 122 (125)
Q Consensus 117 dyGIkd 122 (125)
+.||.-
T Consensus 95 enG~~H 100 (119)
T 3u52_E 95 EQGIDH 100 (119)
T ss_dssp TTTCCT
T ss_pred HcCCCc
Confidence 999863
No 203
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=24.95 E-value=94 Score=21.70 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.5
Q ss_pred EEEeCCCCcHHHHHHHHHHHhcCC
Q 048546 59 DIEVMKTATIAELRQAVEAAFSHM 82 (125)
Q Consensus 59 ~V~V~~~ATV~dLK~aI~~~~~~~ 82 (125)
.+-|..++|+.+|+..|++.+...
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~ 82 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFP 82 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCC
T ss_pred eEEEeccCcHHHHHHHHHHHhCCC
Confidence 467789999999999999998643
No 204
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=24.72 E-value=76 Score=21.89 Aligned_cols=34 Identities=12% Similarity=0.102 Sum_probs=28.5
Q ss_pred EEEEccCCcEEEEEeCCCCcHHHHHHHHHHHhcC
Q 048546 48 LSVRKLDGSCFDIEVMKTATIAELRQAVEAAFSH 81 (125)
Q Consensus 48 ltV~k~~g~~~~V~V~~~ATV~dLK~aI~~~~~~ 81 (125)
..|-..|.+.+.|.++.++|+.|++.++..+...
T Consensus 12 ~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~ 45 (104)
T 1wgy_A 12 CHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQY 45 (104)
T ss_dssp EEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTS
T ss_pred EEEEeccCceEEEEEeccchHHHHHHHHHHHhcC
Confidence 4455668888889899999999999999999853
No 205
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=24.43 E-value=1.6e+02 Score=20.09 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=23.5
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 54 DGSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 54 ~g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
.|.+.-++++......||.+.+..+|.
T Consensus 12 ~gEKRIi~f~RPvkf~dl~qkv~~afG 38 (94)
T 2jrh_A 12 NGERRIIAFSRPVKYEDVEHKVTTVFG 38 (94)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHC
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhC
Confidence 388888889999999999999999885
No 206
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=24.13 E-value=73 Score=23.43 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=23.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 55 GSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 55 g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
...+.+.|+.+||=-|.|+||+..|.
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~ 112 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYN 112 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhC
Confidence 45678899999999999999999986
No 207
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.67 E-value=89 Score=23.07 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 56 SCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 56 ~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
..+.+.|+.+||=-|.|+||++.|.
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~ 118 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYD 118 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHC
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhC
Confidence 4578899999999999999999986
No 208
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=23.37 E-value=93 Score=22.62 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 56 SCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 56 ~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
..+.+.|+.+||=-|.|+||++.|.
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~ 104 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYE 104 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhC
Confidence 4578889999999999999999986
No 209
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=22.93 E-value=2.2e+02 Score=23.85 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=42.7
Q ss_pred eEEEEEccC-CcEEEEEeCCCCcHHHHHHHHHHH--hcCC-CC--CCC-----CcccccccccceEEeecC-eeeccCcc
Q 048546 46 LKLSVRKLD-GSCFDIEVMKTATIAELRQAVEAA--FSHM-PK--TGP-----GKISWPHVWGHFCLCYNG-QKLICEND 113 (125)
Q Consensus 46 MkltV~k~~-g~~~~V~V~~~ATV~dLK~aI~~~--~~~~-~~--~g~-----~~IsW~~VW~q~~L~~~g-~KLl~D~~ 113 (125)
++++|...+ -..+.|.|+.+.|+.|.=++.++. |.+. .+ .|+ .-|. .. =++||..+.+ .+.+ ..
T Consensus 319 VtytV~~~~~~~~~~Vtv~~gssll~vLk~A~e~~~F~F~~~es~~G~fItSInG~~-~~-~~~YW~l~~~p~~pl--~~ 394 (414)
T 2bb6_A 319 VLLKVSGISPSYRHSVSVPAGSSLEDILKNAQEHGRFRFRTQASLSGPFLTSVLGRK-AG-EREFWQVLRDPDTPL--QQ 394 (414)
T ss_dssp EEEEEESSSSCEEEEEEEETTCCHHHHHHHHHHSSSCCEEEECCTTSCEEEEETTEE-CC-TTEEEEEEETTTEEC--SS
T ss_pred EEEEEeeCCCccceEEEecCCCCHHHHHHHHHhccCCceEeeecCCCceEEEECCCc-cC-CCceEEEEECCCCcc--cc
Confidence 455565322 233689999999999988877775 2210 01 000 0000 00 1678887776 3332 34
Q ss_pred hhhhcCCcCCC
Q 048546 114 NIKYYGIRDGD 124 (125)
Q Consensus 114 tL~dyGIkdGd 124 (125)
=..+|.++|||
T Consensus 395 Gv~~y~~~~ge 405 (414)
T 2bb6_A 395 GIADYRPKDGE 405 (414)
T ss_dssp CTTTCCCCTTC
T ss_pred cccceecCCCC
Confidence 56788899987
No 210
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=22.33 E-value=2e+02 Score=19.91 Aligned_cols=61 Identities=10% Similarity=0.110 Sum_probs=38.5
Q ss_pred CCeEEEEEccCCcEE------EEEeCCCCcHHHHHHHHHHHhcCCCCCCCCcccccccccceEEeecCeeeccCcchhhh
Q 048546 44 QPLKLSVRKLDGSCF------DIEVMKTATIAELRQAVEAAFSHMPKTGPGKISWPHVWGHFCLCYNGQKLICENDNIKY 117 (125)
Q Consensus 44 ~aMkltV~k~~g~~~------~V~V~~~ATV~dLK~aI~~~~~~~~~~g~~~IsW~~VW~q~~L~~~g~KLl~D~~tL~d 117 (125)
..|=|.|.+.+++.. -.-|+.+.||+++...|.+..+..++ +.+.|.-++ .+..-+.++.+
T Consensus 30 ~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~------------~alFl~Vn~-~~p~~~~~m~~ 96 (119)
T 3h9d_A 30 DRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAE------------SALFVYTND-TVLPSSAQMAD 96 (119)
T ss_dssp TEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTT------------SCCEEEETT-EECCTTSBHHH
T ss_pred CeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCcc------------ceEEEEECC-cCCCccchHHH
Confidence 445566655554432 24579999999999999998865554 334444455 46555555543
No 211
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=21.57 E-value=1.3e+02 Score=18.81 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=18.6
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHH
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAEL 71 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dL 71 (125)
.+|++...+| ...|+++.+.|+.|.
T Consensus 2 ~~v~~~~~~g-~~~~~~~~g~tlL~a 26 (95)
T 1frr_A 2 YKTVLKTPSG-EFTLDVPEGTTILDA 26 (95)
T ss_dssp EEEEEEETTE-EEEEEECTTCCHHHH
T ss_pred eEEEEEeCCC-cEEEEeCCCCcHHHH
Confidence 4677755677 556788999999874
No 212
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=21.52 E-value=2.1e+02 Score=19.77 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=27.7
Q ss_pred CCeEEEEEccCCcEE------EEEeCCCCcHHHHHHHHHHHhcCCCC
Q 048546 44 QPLKLSVRKLDGSCF------DIEVMKTATIAELRQAVEAAFSHMPK 84 (125)
Q Consensus 44 ~aMkltV~k~~g~~~------~V~V~~~ATV~dLK~aI~~~~~~~~~ 84 (125)
..|=|.|.+.+++.. -.-|+.+.||+++...|.+..+..++
T Consensus 29 ~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~ 75 (118)
T 3rui_B 29 NRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPE 75 (118)
T ss_dssp SEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTT
T ss_pred CceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCC
Confidence 345555555544332 34579999999999999998765443
No 213
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=21.35 E-value=2e+02 Score=19.81 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 55 GSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 55 g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
|.++-++++......||.+.+..+|.
T Consensus 29 gEkRIi~f~RPv~f~el~~kv~~afG 54 (100)
T 2npt_B 29 GEKRILQFPRPVKLEDLRSKAKIAFG 54 (100)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHHHHT
T ss_pred CceEEEecCCCccHHHHHHHHHHHhC
Confidence 89999999999999999999999985
No 214
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=21.30 E-value=1.3e+02 Score=20.70 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=21.8
Q ss_pred eEEEEEccCCcEEEEEeCCCCcHHHH
Q 048546 46 LKLSVRKLDGSCFDIEVMKTATIAEL 71 (125)
Q Consensus 46 MkltV~k~~g~~~~V~V~~~ATV~dL 71 (125)
.+|++...+|....|+++...|+.|.
T Consensus 22 ~~Vt~~~~~G~~~~v~~~~G~tLL~a 47 (126)
T 3hui_A 22 AKINFVDHTGETRTVEVEEGATVMEA 47 (126)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHH
T ss_pred eEEEEEeCCCCEEEEEECCCCcHHHH
Confidence 48999778998888888999999873
No 215
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=21.14 E-value=2e+02 Score=20.14 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=24.7
Q ss_pred CCcEEEEEeCCCCcHHHHHHHHHHHhc
Q 048546 54 DGSCFDIEVMKTATIAELRQAVEAAFS 80 (125)
Q Consensus 54 ~g~~~~V~V~~~ATV~dLK~aI~~~~~ 80 (125)
.|.+.-|+++......||.+.+..+|.
T Consensus 39 ~gEKRIiqf~RPvkf~dl~qkv~~afG 65 (111)
T 2c60_A 39 NGERRIIAFSRPVKYEDVEHKVTTVFG 65 (111)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHHHHS
T ss_pred cCceEEEecCCCccHHHHHHHHHHHhC
Confidence 488889999999999999999999985
No 216
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=21.05 E-value=1.2e+02 Score=19.47 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=19.9
Q ss_pred EEEEEccCCcEEEEEeCCCCcHHHH
Q 048546 47 KLSVRKLDGSCFDIEVMKTATIAEL 71 (125)
Q Consensus 47 kltV~k~~g~~~~V~V~~~ATV~dL 71 (125)
+|++...+|....|+++...|+.|.
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~a 26 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEA 26 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 6777677887778888999999764
No 217
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=20.65 E-value=1.3e+02 Score=19.33 Aligned_cols=25 Identities=16% Similarity=0.282 Sum_probs=19.9
Q ss_pred EEEEEccCCcEEEEEeCCCCcHHHH
Q 048546 47 KLSVRKLDGSCFDIEVMKTATIAEL 71 (125)
Q Consensus 47 kltV~k~~g~~~~V~V~~~ATV~dL 71 (125)
+|++...+|....|+++...|+.|.
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLea 26 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQA 26 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHH
Confidence 5777677897778888999999774
Done!