BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048547
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 79/117 (67%), Gaps = 7/117 (5%)
Query: 53 RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQ 112
RRS NYQP++WD +++QSLN+ YT+E + R+ EL +V +K+ EP+ QLELI L+
Sbjct: 6 RRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLK 65
Query: 113 RLGLAYHFETEIRNILHDIYNS-----NNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
LGL+ F+ EI+ IL IYN NN+ K +LY T+L FRLLRQHG+ +SQ
Sbjct: 66 YLGLSDFFQDEIKEILGVIYNEHKCFHNNEV--EKMDLYFTALGFRLLRQHGFNISQ 120
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 99.4 bits (246), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 75/116 (64%), Gaps = 4/116 (3%)
Query: 53 RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQ 112
RRS NY PS WD +F+QSL S+Y ++ + R EL V ++ T+ + QLELID LQ
Sbjct: 2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKETDQIRQLELIDDLQ 61
Query: 113 RLGLAYHFETEIRNILHDIYNSN----NDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
R+GL+ HF+ E + IL IY + N + + +LY+TSL FRLLR+HG+ V+Q
Sbjct: 62 RMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQ 117
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 76/113 (67%), Gaps = 1/113 (0%)
Query: 53 RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIK-DVTEPLNQLELIDSL 111
RRSA+Y+P+ WD+DFL S +++ + E YK + ++L+ +V I + E L LELID++
Sbjct: 15 RRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNV 74
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
QRLGL Y FE++IR L +S K +L+AT+L FRLLRQHG+ VSQ
Sbjct: 75 QRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQ 127
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 72/111 (64%), Gaps = 2/111 (1%)
Query: 54 RSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQR 113
R+ YQP++WD +QS +S Y +E + R + +V +++ + + +LELID L+R
Sbjct: 36 RTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRR 95
Query: 114 LGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVSQ 164
LG++ HFE EI IL+ Y +NN+ + +LY+T+L FRLLRQ+ + VSQ
Sbjct: 96 LGISCHFEREIVEILNSKYYTNNEI--DERDLYSTALRFRLLRQYDFSVSQ 144
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 9/114 (7%)
Query: 53 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRE---EELKGKVMTTIKDVTEPLNQLELID 109
R A++QPSIW FL + N ET KR + EE++ ++ + + T+ +L ID
Sbjct: 22 RPKADFQPSIWGDLFLNCPDKNIDAETEKRHQQLKEEVRKMIVAPMANSTQ---KLAFID 78
Query: 110 SLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
S+QRLG++YHF EI + L +IY++NND + +LY TS+ FRLLR+HGY VS
Sbjct: 79 SVQRLGVSYHFTKEIEDELENIYHNNND---AENDLYTTSIRFRLLREHGYNVS 129
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 53 RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
R A++ PS+W FL N E Y + E LK + + L + L LID++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
+RLG++YHFE EI +IL IYN N++ +L ++L+FRLLRQHG+ +S
Sbjct: 75 ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 122
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 53 RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
R A++ PS+W FL N E Y + E LK + + L + L LID++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
+RLG++YHFE EI +IL IYN N++ +L ++L+FRLLRQHG+ +S
Sbjct: 75 ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 122
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 53 RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
R A++ PS+W FL N E Y + E LK + + L + L LID++
Sbjct: 2 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 61
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
+RLG++YHFE EI +IL IYN N++ +L ++L+FRLLRQHG+ +S
Sbjct: 62 ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 109
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 53 RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
R A++ PS+W FL N E Y + E LK + + L + L LID++
Sbjct: 17 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 76
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
+RLG++YHFE EI +IL IYN N++ +L ++L+FRLLRQHG+ +S
Sbjct: 77 ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 124
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 53 RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
R A++ PS+W FL N E Y + E LK + + L + L LID++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
+RLG++YHFE EI +IL IYN N++ +L ++L+FRLLRQHG+ +S
Sbjct: 75 ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 122
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 53 RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
R A++ PS+W FL N E Y + E LK + + L + L LID++
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 74
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
+RLG++YHFE EI +IL IYN N++ +L ++L+FRLLRQHG+ +S
Sbjct: 75 ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 122
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 53 RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
R A++ PS+W FL N E Y + E LK + + L + L LID++
Sbjct: 17 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTI 76
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
+RLG++YHFE EI +IL IYN N++ +L ++L+FRLLRQHG+ +S
Sbjct: 77 ERLGISYHFEKEIDDILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 124
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 53 RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
R A++ PS+W FL N E Y + E LK + + + L + L LID +
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDII 74
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
+RLG++YHFE EI IL IYN N++ +L ++L+FRLLRQHG+ +S
Sbjct: 75 ERLGISYHFEKEIDEILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 122
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 53 RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPL-NQLELIDSL 111
R A++ PS+W FL N E Y + E LK + + + L + L LID +
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDII 74
Query: 112 QRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPVS 163
+RLG++YHFE EI IL IYN N++ +L ++L+FRLLRQHG+ +S
Sbjct: 75 ERLGISYHFEKEIDEILDQIYNQNSNC----NDLCTSALQFRLLRQHGFNIS 122
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 58 YQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLA 117
+ PS F+Q+ +SN E + + G V + + ++D LQRLG++
Sbjct: 205 FSPSSTAFAFMQTRDSNCL-EYLRNAVKRFNGGVPNVFP--VDLFEHIWIVDRLQRLGIS 261
Query: 118 YHFETEIRNILHDI--YNSNNDYVWRK----ENLYATSLEFRLLRQHGYPVS 163
+FE EI+ L + Y ++N W + +++ T++ FRLLRQHGY VS
Sbjct: 262 RYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVS 313
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 102 LNQLELIDSLQRLGLAYHFETEIRNILHDIYN--SNNDYVWRKENLY----ATSLEFRLL 155
L +L L+D+++ LG+ HF+ EI+ L +Y S W +++L T+L R L
Sbjct: 247 LERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTL 306
Query: 156 RQHGYPVS 163
R HGY VS
Sbjct: 307 RMHGYNVS 314
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 102 LNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNND--YVWRKEN----LYATSLEFRLL 155
L +L ++D++ RLG+ HFE EI+ L +Y N+ W + N L T+L FRLL
Sbjct: 299 LERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLL 358
Query: 156 RQHGYPVS 163
R H Y VS
Sbjct: 359 RLHRYNVS 366
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 53 RRSANYQPSIWDHDFLQSLNSNYTDETYKRREEELKGKVMTTI 95
RR+AN P++W +D + SL S Y D +Y+ R E L ++ +
Sbjct: 25 RRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAML 67
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 101 PLNQLE---LIDSLQRLGLAYHFETEIRNILHDIYNSNND--YVWRKEN----LYATSLE 151
PL+ E +D+++RLG+ HF+ EI+ L +Y+ ++ W +EN + T++
Sbjct: 267 PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMG 326
Query: 152 FRLLRQHGYPVS 163
R+LR HGY VS
Sbjct: 327 LRILRLHGYNVS 338
>pdb|3J26|N Chain N, The 3.5 A Resolution Structure Of The Sputnik Virophage By
Cryo-Em
Length = 378
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 90 KVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATS 149
+ +TT ++ +N DS++ +GL Y+ T R+IL D+ N+Y E +
Sbjct: 185 RTLTTPIEIYCNVNLFTFFDSIKHIGLGYNTPTG-RDILFDVRFLGNNYYQDPETAPSYP 243
Query: 150 LEFRLLRQHGYP 161
EF ++Q YP
Sbjct: 244 PEFIQMQQE-YP 254
>pdb|3MES|A Chain A, Crystal Structure Of Choline Kinase From Cryptosporidium
Parvum Iowa Ii, Cgd3_2030
pdb|3MES|B Chain B, Crystal Structure Of Choline Kinase From Cryptosporidium
Parvum Iowa Ii, Cgd3_2030
Length = 424
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 25 NKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRE 84
++ + IM K V L+S L R+ YQP+ + DF + N+ +T K++E
Sbjct: 349 SQQIVHIMTKAVEVFTLISHITWGLWSIARTPGYQPNSVEFDFTEYANTRFTHYLQKKKE 408
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Query: 87 LKGKVMTTI-KDVTEPLNQLELIDSLQRLGLAYHFETE----IRNILHDIYNSNN 136
L+GK+M T+ +DV L + EL + LQR+ + + T I +++D+ N NN
Sbjct: 96 LQGKIMLTLSQDVVFRLRK-ELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINN 149
>pdb|1L1L|A Chain A, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|B Chain B, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|C Chain C, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|D Chain D, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
Length = 739
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 78 ETYKRREEELKGKVMTTIKDVTEPLNQLELID 109
ETY++R +E+ G V + + LEL+D
Sbjct: 696 ETYEKRSQEITGNVEEVFSQLNSDVKDLELVD 727
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 26.9 bits (58), Expect = 5.8, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 64 DHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLEL 107
D + L + + E + ++ EL GK+ T+K VTE L L
Sbjct: 698 DREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRF 741
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 26.9 bits (58), Expect = 5.8, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 64 DHDFLQSLNSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLEL 107
D + L + + E + ++ EL GK+ T+K VTE L L
Sbjct: 698 DREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRF 741
>pdb|2VXK|A Chain A, Structural Comparison Between Aspergillus Fumigatus And
Human Gna1
pdb|2VEZ|A Chain A, Afgna1 Crystal Structure Complexed With Acetyl-Coa And
Glucose-6p Gives New Insights Into Catalysis
Length = 190
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 42 VSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYT-----DETYKRREEELKGKVMTTIK 96
V+ D T D + + PS+ D L L ++YT YKR ++ +V+TT+
Sbjct: 15 VTKSVDAPTADENTPLFSPSLISPDVLAVLPADYTIRPLCRSDYKRGYLDVL-RVLTTVG 73
Query: 97 DVTE 100
D+ E
Sbjct: 74 DINE 77
>pdb|3GHG|A Chain A, Crystal Structure Of Human Fibrinogen
pdb|3GHG|D Chain D, Crystal Structure Of Human Fibrinogen
pdb|3GHG|G Chain G, Crystal Structure Of Human Fibrinogen
pdb|3GHG|J Chain J, Crystal Structure Of Human Fibrinogen
Length = 562
Score = 26.2 bits (56), Expect = 9.1, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 72 NSNYTDETYKRREEELKGKVMTTIKDVTEPLNQLELI 108
++N D TY R E+L+ ++ + V E + ++L+
Sbjct: 100 SANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLL 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,757,620
Number of Sequences: 62578
Number of extensions: 173929
Number of successful extensions: 514
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 461
Number of HSP's gapped (non-prelim): 48
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)