Query 048547
Match_columns 164
No_of_seqs 144 out of 710
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 10:31:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01397 Terpene_synth: Terpen 100.0 2E-36 4.4E-41 241.8 6.2 102 63-164 1-109 (183)
2 cd00684 Terpene_cyclase_plant_ 100.0 1E-34 2.2E-39 263.3 10.0 112 53-164 1-117 (542)
3 PLN02279 ent-kaur-16-ene synth 100.0 2.7E-34 5.9E-39 269.2 10.1 132 6-164 198-334 (784)
4 PLN02592 ent-copalyl diphospha 100.0 2.8E-33 6.1E-38 262.3 9.9 131 6-164 239-379 (800)
5 PF02084 Bindin: Bindin; Inte 64.4 5.8 0.00013 33.1 2.5 34 122-158 107-140 (238)
6 PF09633 DUF2023: Protein of u 50.0 15 0.00031 27.0 2.2 40 82-121 5-44 (101)
7 PF11000 DUF2840: Protein of u 49.0 10 0.00022 29.6 1.4 14 105-118 98-111 (149)
8 PF08373 RAP: RAP domain; Int 48.3 12 0.00027 23.5 1.5 18 145-162 17-34 (58)
9 cd07604 BAR_ASAPs The Bin/Amph 46.3 52 0.0011 27.0 5.3 54 78-131 12-68 (215)
10 COG4738 Predicted transcriptio 45.6 44 0.00095 25.3 4.2 49 106-160 15-70 (124)
11 cd03569 VHS_Hrs_Vps27p VHS dom 38.3 66 0.0014 24.4 4.4 22 143-164 120-141 (142)
12 smart00027 EH Eps15 homology d 37.9 1.3E+02 0.0029 20.6 7.8 74 84-164 9-84 (96)
13 PF03578 HGWP: HGWP repeat; I 37.6 13 0.00029 21.1 0.4 11 154-164 8-18 (28)
14 PHA00438 hypothetical protein 32.0 23 0.0005 24.9 0.9 11 151-161 40-50 (81)
15 PF14164 YqzH: YqzH-like prote 31.5 28 0.00061 23.5 1.2 13 152-164 11-23 (64)
16 PF00233 PDEase_I: 3'5'-cyclic 28.3 29 0.00063 28.5 1.0 47 111-162 44-90 (237)
17 COG1400 SEC65 Signal recogniti 26.2 43 0.00093 24.2 1.5 13 106-118 36-48 (93)
18 PF00601 Flu_NS2: Influenza no 25.2 77 0.0017 22.9 2.6 42 82-126 47-88 (94)
19 PF08041 PetM: PetM family of 24.8 81 0.0018 18.3 2.2 15 145-159 15-29 (31)
20 PF09278 MerR-DNA-bind: MerR, 23.6 97 0.0021 19.6 2.7 23 103-128 2-24 (65)
21 PF00797 Acetyltransf_2: N-ace 23.1 41 0.00089 27.0 1.0 22 142-163 47-68 (240)
22 PF07499 RuvA_C: RuvA, C-termi 22.9 1.4E+02 0.0031 18.1 3.3 24 107-133 6-29 (47)
23 PF01963 TraB: TraB family; I 22.4 38 0.00082 27.2 0.7 13 152-164 246-258 (259)
24 cd03568 VHS_STAM VHS domain fa 21.8 1.9E+02 0.004 22.1 4.4 20 143-162 116-135 (144)
25 PF01585 G-patch: G-patch doma 21.3 64 0.0014 19.7 1.4 13 149-161 3-15 (45)
26 PF11848 DUF3368: Domain of un 21.0 74 0.0016 19.6 1.7 11 153-163 26-36 (48)
27 KOG2336 Molybdopterin biosynth 21.0 92 0.002 27.5 2.8 35 80-122 45-79 (422)
28 PF11121 DUF2639: Protein of u 20.3 71 0.0015 19.6 1.4 21 105-125 6-26 (40)
29 PRK02048 4-hydroxy-3-methylbut 20.3 1.7E+02 0.0037 28.0 4.5 24 73-96 125-148 (611)
No 1
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=2e-36 Score=241.82 Aligned_cols=102 Identities=55% Similarity=0.890 Sum_probs=84.9
Q ss_pred CcccccccCCCCCc------hHHHHHHHHHHHHHhcccccccc-cccchhhHHHHHHHhCcccchHHHHHHHHHHHHhcc
Q 048547 63 WDHDFLQSLNSNYT------DETYKRREEELKGKVMTTIKDVT-EPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSN 135 (164)
Q Consensus 63 W~~~fl~sl~~~~~------~~~~~~~~e~LKeeVr~ml~~~~-d~~e~L~lID~LQRLGIsyhFe~EI~~~L~~i~~~~ 135 (164)
|||.|++++.+.+. .+++.+++++||++||+|+.... |+.++|+|||+||||||+|||++||+++|+++|+.+
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~ 80 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSW 80 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTT
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhc
Confidence 99999965443333 37889999999999999998754 899999999999999999999999999999999987
Q ss_pred CCcCCCCCChHHHHHHHHHhhhCCCCCCC
Q 048547 136 NDYVWRKENLYATSLEFRLLRQHGYPVSQ 164 (164)
Q Consensus 136 ~~~~~~~~DL~~~AL~FRLLRqhGY~VS~ 164 (164)
...+....|||+|||+|||||||||+|||
T Consensus 81 ~~~~~~~~dL~~~AL~FRLLRqhGy~VS~ 109 (183)
T PF01397_consen 81 DEDNEEIDDLYTTALRFRLLRQHGYYVSS 109 (183)
T ss_dssp TTTSHTSSCHHHHHHHHHHHHHTT----G
T ss_pred cccccccCchhHHHHHHHHHHHcCCcccH
Confidence 76432235999999999999999999996
No 2
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=1e-34 Score=263.31 Aligned_cols=112 Identities=47% Similarity=0.780 Sum_probs=96.9
Q ss_pred CCCCCCCCCCCcccccccCCCCCchH-HHHHHHHHHHHHhcccccc---cccccchhhHHHHHHHhCcccchHHHHHHHH
Q 048547 53 RRSANYQPSIWDHDFLQSLNSNYTDE-TYKRREEELKGKVMTTIKD---VTEPLNQLELIDSLQRLGLAYHFETEIRNIL 128 (164)
Q Consensus 53 r~~a~~~PsiW~~~fl~sl~~~~~~~-~~~~~~e~LKeeVr~ml~~---~~d~~e~L~lID~LQRLGIsyhFe~EI~~~L 128 (164)
|+.++|+|++||+.+++++..++... .+.+++++||++||+|+.. +.|++++|++||+||||||+|||++||+++|
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~~~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L 80 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEIL 80 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcchhHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHH
Confidence 67899999999995555555544443 7889999999999999976 6799999999999999999999999999999
Q ss_pred HHHHhccCCcC-CCCCChHHHHHHHHHhhhCCCCCCC
Q 048547 129 HDIYNSNNDYV-WRKENLYATSLEFRLLRQHGYPVSQ 164 (164)
Q Consensus 129 ~~i~~~~~~~~-~~~~DL~~~AL~FRLLRqhGY~VS~ 164 (164)
++||+.|...+ ....|||+|||+|||||||||+|||
T Consensus 81 ~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~ 117 (542)
T cd00684 81 DYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSS 117 (542)
T ss_pred HHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCH
Confidence 99999876532 2237999999999999999999996
No 3
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=2.7e-34 Score=269.24 Aligned_cols=132 Identities=24% Similarity=0.313 Sum_probs=108.2
Q ss_pred CCchhHhhhcCCCCCChhhHHHHHHhhhcCCCeeeccCcccccccccCCCCCCCCCCCcccccccCCCCCchHHHHHHHH
Q 048547 6 NPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRREE 85 (164)
Q Consensus 6 ~p~~~~~~~eg~~~~~~~~w~~~~~~~~~~gs~~~s~s~~~~~~~~~r~~a~~~PsiW~~~fl~sl~~~~~~~~~~~~~e 85 (164)
.|+||+||+|||+++ +||++++++|++||||++|||+ ||.. +++. .++.+....+
T Consensus 198 ~~~~l~~s~Egl~~~--~dw~~v~~~q~~~Gs~~~SPsa--TAa~----------------l~~~-----~~~~~~~yL~ 252 (784)
T PLN02279 198 REAYLAYVSEGIGKL--QDWEMVMKYQRKNGSLFNSPST--TAAA----------------FSHL-----QNAGCLRYLR 252 (784)
T ss_pred CcchHHHHHhhcccc--ccHHHHHhhcCCCCCcccCcHH--HHHH----------------HHcc-----CChHHHHHHH
Confidence 699999999999998 5999999999999999999999 8733 3322 1233333333
Q ss_pred ----HHHHHhcccccccccccchhhHHHHHHHhCcccchHHHHHHHHHHHHhccCCcCC-CCCChHHHHHHHHHhhhCCC
Q 048547 86 ----ELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVW-RKENLYATSLEFRLLRQHGY 160 (164)
Q Consensus 86 ----~LKeeVr~ml~~~~d~~e~L~lID~LQRLGIsyhFe~EI~~~L~~i~~~~~~~~~-~~~DL~~~AL~FRLLRqhGY 160 (164)
+....|+.++ +.+.++++|+||+||||||+|||++||+++|+++|+.|...+. ...|||+|||+|||||||||
T Consensus 253 ~~~~~~~g~vP~~y--p~~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy 330 (784)
T PLN02279 253 SLLQKFGNAVPTVY--PLDQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGY 330 (784)
T ss_pred HHHHhcCCCCCCCC--cccHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCC
Confidence 3335577777 4789999999999999999999999999999999997764211 12699999999999999999
Q ss_pred CCCC
Q 048547 161 PVSQ 164 (164)
Q Consensus 161 ~VS~ 164 (164)
+|||
T Consensus 331 ~VS~ 334 (784)
T PLN02279 331 DVSS 334 (784)
T ss_pred CCCh
Confidence 9996
No 4
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=2.8e-33 Score=262.25 Aligned_cols=131 Identities=25% Similarity=0.415 Sum_probs=106.8
Q ss_pred CCchhHhhhcCCCCCChhhHHHHHHhhhcCCCeeeccCcccccccccCCCCCCCCCCCcccccccCCCCCchHHHHHH--
Q 048547 6 NPSTLVTSVNGFKCLPLATNKAAIRIMAKNKPVQCLVSAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRR-- 83 (164)
Q Consensus 6 ~p~~~~~~~eg~~~~~~~~w~~~~~~~~~~gs~~~s~s~~~~~~~~~r~~a~~~PsiW~~~fl~sl~~~~~~~~~~~~-- 83 (164)
+|+||+||+|||+++ ||++++++|++||||++|||+ ||... ++. .++.+.+.
T Consensus 239 ~p~~llhslEgl~~~---dw~~v~~~q~~~GS~~~SPSa--TAaaL----------------~~~-----~d~~cl~YL~ 292 (800)
T PLN02592 239 VPTTLLHSLEGMPGL---DWEKLLKLQCQDGSFLFSPSS--TAFAL----------------MQT-----KDENCLEYLN 292 (800)
T ss_pred CcchHHHHHhccccC---CHHHHhcccCCCCCccCCchH--HHHHH----------------hcc-----CchHHHHHHH
Confidence 799999999999986 999999999999999999999 87432 221 12233333
Q ss_pred --HHHHHHHhcccccccccccchhhHHHHHHHhCcccchHHHHHHHHHHHHhccCCcC--C--C--CCChHHHHHHHHHh
Q 048547 84 --EEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYV--W--R--KENLYATSLEFRLL 155 (164)
Q Consensus 84 --~e~LKeeVr~ml~~~~d~~e~L~lID~LQRLGIsyhFe~EI~~~L~~i~~~~~~~~--~--~--~~DL~~~AL~FRLL 155 (164)
+.+....|+.++ +.+++++|++||+||||||+|||++||+++|+++|+.|...+ + + ..|+++|||+||||
T Consensus 293 ~~~~k~~GgVP~vy--P~d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLL 370 (800)
T PLN02592 293 KAVQRFNGGVPNVY--PVDLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLL 370 (800)
T ss_pred HHHHHcCCCCCCCC--CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHH
Confidence 334445677777 478999999999999999999999999999999999665422 1 1 26999999999999
Q ss_pred hhCCCCCCC
Q 048547 156 RQHGYPVSQ 164 (164)
Q Consensus 156 RqhGY~VS~ 164 (164)
|||||+|||
T Consensus 371 RqhGy~VS~ 379 (800)
T PLN02592 371 RLHGHQVSA 379 (800)
T ss_pred HHcCCCCCh
Confidence 999999996
No 5
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=64.40 E-value=5.8 Score=33.14 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhccCCcCCCCCChHHHHHHHHHhhhC
Q 048547 122 TEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQH 158 (164)
Q Consensus 122 ~EI~~~L~~i~~~~~~~~~~~~DL~~~AL~FRLLRqh 158 (164)
++|+++|...--.... +++|-|+.-|..|=||+|
T Consensus 107 ~~ikavLgaTKiDLPV---DINDPYDlGLLLRhLRHH 140 (238)
T PF02084_consen 107 EDIKAVLGATKIDLPV---DINDPYDLGLLLRHLRHH 140 (238)
T ss_pred HHHHHHhccccccccc---ccCChhhHHHHHHHHHHH
Confidence 5566666433111111 458999999999999998
No 6
>PF09633 DUF2023: Protein of unknown function (DUF2023); InterPro: IPR018594 This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. ; PDB: 2GUK_B.
Probab=49.95 E-value=15 Score=27.04 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=26.4
Q ss_pred HHHHHHHHHhcccccccccccchhhHHHHHHHhCcccchH
Q 048547 82 RREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFE 121 (164)
Q Consensus 82 ~~~e~LKeeVr~ml~~~~d~~e~L~lID~LQRLGIsyhFe 121 (164)
..+=+.|+.||.|+.-+...-..-..+..|+|-||+|+.+
T Consensus 5 hhIYEy~KGvR~LvL~T~~~~~~~~~~~rL~~~~I~y~iq 44 (101)
T PF09633_consen 5 HHIYEYKKGVRQLVLHTLPKRYEEFAIARLERQGIDYFIQ 44 (101)
T ss_dssp HHHHHHHCTS-SEEEEEEEGGGHHHHHHHHHHTT--EEEE
T ss_pred HHHHHhhhhhhhHhhhhCCHhhHHHHHHHHHHCCCCEEEE
Confidence 3455778899999865444444455789999999999864
No 7
>PF11000 DUF2840: Protein of unknown function (DUF2840); InterPro: IPR021263 This bacterial family of proteins have no known function.
Probab=49.05 E-value=10 Score=29.63 Aligned_cols=14 Identities=36% Similarity=0.672 Sum_probs=12.3
Q ss_pred hhHHHHHHHhCccc
Q 048547 105 LELIDSLQRLGLAY 118 (164)
Q Consensus 105 L~lID~LQRLGIsy 118 (164)
|..||+|+.|||+-
T Consensus 98 L~~IDaiEalGidp 111 (149)
T PF11000_consen 98 LQAIDAIEALGIDP 111 (149)
T ss_pred HHHHhHHHHcCCCh
Confidence 56999999999974
No 8
>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes. It is particularly abundant in apicomplexans and might mediate a range of cellular functions through its potential interactions with RNA []. The RAP domain consists of multiple blocks of charged and aromatics residues and is predicted to be composed of alpha helical and beta strand structures. Two predicted loop regions that are dominated by glycine and tryptophan residues are found before and after the central beta sheet []. Some proteins known to contain a RAP domain are listed below: Human hypothetical protein MGC5297, Mammalian FAST kinase domain-containing proteins (FASTKDs), Chlamydomonas reinhardtii chloroplastic trans-splicing factor Raa3.
Probab=48.26 E-value=12 Score=23.46 Aligned_cols=18 Identities=39% Similarity=0.521 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhhhCCCCC
Q 048547 145 LYATSLEFRLLRQHGYPV 162 (164)
Q Consensus 145 L~~~AL~FRLLRqhGY~V 162 (164)
+-.++|+=|+|+..||+|
T Consensus 17 ~g~t~lk~r~L~~~G~~V 34 (58)
T PF08373_consen 17 TGSTKLKHRHLKALGYKV 34 (58)
T ss_pred chHHHHHHHHHHHCCCEE
Confidence 357999999999999987
No 9
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=46.32 E-value=52 Score=26.95 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhccccccccc-ccchhhHHHHHHHhCcccc--hHHHHHHHHHHH
Q 048547 78 ETYKRREEELKGKVMTTIKDVTE-PLNQLELIDSLQRLGLAYH--FETEIRNILHDI 131 (164)
Q Consensus 78 ~~~~~~~e~LKeeVr~ml~~~~d-~~e~L~lID~LQRLGIsyh--Fe~EI~~~L~~i 131 (164)
+..+.+.++++..++.|.....+ ......++++|+.||=..- .+.+|..+|...
T Consensus 12 ~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF 68 (215)
T cd07604 12 EGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKF 68 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHH
Confidence 34467788999999998854333 4557889999999993221 233688888665
No 10
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=45.61 E-value=44 Score=25.27 Aligned_cols=49 Identities=22% Similarity=0.319 Sum_probs=30.0
Q ss_pred hHHHHHHHhCcccchHHHHHHHHHHHHhccCCcCC-------CCCChHHHHHHHHHhhhCCC
Q 048547 106 ELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVW-------RKENLYATSLEFRLLRQHGY 160 (164)
Q Consensus 106 ~lID~LQRLGIsyhFe~EI~~~L~~i~~~~~~~~~-------~~~DL~~~AL~FRLLRqhGY 160 (164)
.+|+.|++|||++.- ++--+|-...+... .+.-=-.||++-|.||.+|+
T Consensus 15 ~~ie~L~~lgi~R~v------A~tlv~L~~~~E~sS~~IE~~sgLRQPEVSiAMr~Lre~gW 70 (124)
T COG4738 15 EIIELLRILGIPRNV------ATTLVCLAKGDEASSREIERVSGLRQPEVSIAMRYLRENGW 70 (124)
T ss_pred HHHHHHHHcCCCchH------HHHHHHHhcCcchhhhhhHHhhcCCCchhHHHHHHHHHccc
Confidence 489999999999874 22222222111100 01112368999999999996
No 11
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=38.31 E-value=66 Score=24.45 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=18.2
Q ss_pred CChHHHHHHHHHhhhCCCCCCC
Q 048547 143 ENLYATSLEFRLLRQHGYPVSQ 164 (164)
Q Consensus 143 ~DL~~~AL~FRLLRqhGY~VS~ 164 (164)
.++-.+.=.+..||..||..++
T Consensus 120 ~~l~~i~~~y~~L~~~G~~FP~ 141 (142)
T cd03569 120 PQLKYVVDTYQILKAEGHKFPE 141 (142)
T ss_pred cccHHHHHHHHHHHHcCCCCCC
Confidence 4677788889999999998764
No 12
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=37.90 E-value=1.3e+02 Score=20.58 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=40.9
Q ss_pred HHHHHHHhcccccccccccchhhHHHHHHHhCcccchHHHHHHHHHHHHhccCCcCCCCCChH--HHHHHHHHhhhCCCC
Q 048547 84 EEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLY--ATSLEFRLLRQHGYP 161 (164)
Q Consensus 84 ~e~LKeeVr~ml~~~~d~~e~L~lID~LQRLGIsyhFe~EI~~~L~~i~~~~~~~~~~~~DL~--~~AL~FRLLRqhGY~ 161 (164)
.+.+++..+.+=.+..+.+..-++...+.++|++ ++|++.++..+- ...+ +.-|+. -.++..---.+.||.
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~---~~ev~~i~~~~d-~~~~---g~I~~~eF~~~~~~~~~~~~g~~ 81 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLP---QTLLAKIWNLAD-IDND---GELDKDEFALAMHLIYRKLNGYP 81 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCC---HHHHHHHHHHhc-CCCC---CCcCHHHHHHHHHHHHHHHcCCC
Confidence 3344444433222234556666677788888875 467887776542 1111 112333 345555556678998
Q ss_pred CCC
Q 048547 162 VSQ 164 (164)
Q Consensus 162 VS~ 164 (164)
|++
T Consensus 82 ~~~ 84 (96)
T smart00027 82 IPA 84 (96)
T ss_pred CCc
Confidence 874
No 13
>PF03578 HGWP: HGWP repeat; InterPro: IPR005213 This short (30 amino acids) repeat is found in a number of plant proteins. It contains a conserved HGWP motif, hence its name. The function of these proteins is unknown.
Probab=37.59 E-value=13 Score=21.07 Aligned_cols=11 Identities=45% Similarity=0.951 Sum_probs=8.8
Q ss_pred HhhhCCCCCCC
Q 048547 154 LLRQHGYPVSQ 164 (164)
Q Consensus 154 LLRqhGY~VS~ 164 (164)
-||.||+.|.|
T Consensus 8 c~rLhGW~i~p 18 (28)
T PF03578_consen 8 CLRLHGWPIMP 18 (28)
T ss_pred heeeccCcccC
Confidence 47899998865
No 14
>PHA00438 hypothetical protein
Probab=31.96 E-value=23 Score=24.88 Aligned_cols=11 Identities=73% Similarity=1.171 Sum_probs=9.0
Q ss_pred HHHHhhhCCCC
Q 048547 151 EFRLLRQHGYP 161 (164)
Q Consensus 151 ~FRLLRqhGY~ 161 (164)
..|+|||+||-
T Consensus 40 ~i~~lR~~G~S 50 (81)
T PHA00438 40 EIRLLRQAGYS 50 (81)
T ss_pred hHHHHHHcCCc
Confidence 35899999984
No 15
>PF14164 YqzH: YqzH-like protein
Probab=31.54 E-value=28 Score=23.49 Aligned_cols=13 Identities=46% Similarity=0.613 Sum_probs=10.0
Q ss_pred HHHhhhCCCCCCC
Q 048547 152 FRLLRQHGYPVSQ 164 (164)
Q Consensus 152 FRLLRqhGY~VS~ 164 (164)
=+-|||.||++.+
T Consensus 11 ~~~l~QYg~d~~~ 23 (64)
T PF14164_consen 11 INCLRQYGYDVEC 23 (64)
T ss_pred HHHHHHhCCcccC
Confidence 3678999999753
No 16
>PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This entry represents the catalytic domain of PDE which is multihelical and can be divided into three subdomains.; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0007165 signal transduction; PDB: 3I8V_A 3TVX_A 2QYK_A 1ZKL_A 3G3N_A 4DFF_B 2OUS_B 3SNL_A 2OUY_A 2OUP_B ....
Probab=28.35 E-value=29 Score=28.48 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=34.4
Q ss_pred HHHhCcccchHHHHHHHHHHHHhccCCcCCCCCChHHHHHHHHHhhhCCCCC
Q 048547 111 LQRLGLAYHFETEIRNILHDIYNSNNDYVWRKENLYATSLEFRLLRQHGYPV 162 (164)
Q Consensus 111 LQRLGIsyhFe~EI~~~L~~i~~~~~~~~~~~~DL~~~AL~FRLLRqhGY~V 162 (164)
+..=|+..-|.-..+..|..+|.... ...-|-+|+.|+|||..|+++
T Consensus 44 v~HpG~~N~flv~~~~~LA~~Y~d~S-----vLE~~H~~~~~~lL~~~~~ni 90 (237)
T PF00233_consen 44 VDHPGVNNAFLVKTNSPLAILYNDRS-----VLENHHCALAFQLLRKEECNI 90 (237)
T ss_dssp TT-SSSCHHHHHHTTSHHHHHTTTSS-----HHHHHHHHHHHHHHTSTTTTT
T ss_pred CCCCccccchhhccccchhhhcCccC-----CccccHHHHHHHHHHhhhhhh
Confidence 34558888888888888888874311 124677899999999999986
No 17
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=26.23 E-value=43 Score=24.18 Aligned_cols=13 Identities=38% Similarity=0.677 Sum_probs=11.9
Q ss_pred hHHHHHHHhCccc
Q 048547 106 ELIDSLQRLGLAY 118 (164)
Q Consensus 106 ~lID~LQRLGIsy 118 (164)
+++|+++.||+.+
T Consensus 36 ei~~a~~~LGl~~ 48 (93)
T COG1400 36 EIAEALRELGLKP 48 (93)
T ss_pred HHHHHHHHcCCCe
Confidence 4899999999999
No 18
>PF00601 Flu_NS2: Influenza non-structural protein (NS2); InterPro: IPR000968 The Influenza A virus belongs to the class of ssRNA negative-strand viruses. Nonstructural protein 2 (NS2) may play a role in promoting normal replication of the genomic RNAs by preventing the replication of short-length RNA species []. NS1 and NS2 proteins are produced from the same gene by alternative splicing.; GO: 0006405 RNA export from nucleus, 0042025 host cell nucleus; PDB: 1PD3_B.
Probab=25.24 E-value=77 Score=22.86 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcccccccccccchhhHHHHHHHhCcccchHHHHHH
Q 048547 82 RREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFETEIRN 126 (164)
Q Consensus 82 ~~~e~LKeeVr~ml~~~~d~~e~L~lID~LQRLGIsyhFe~EI~~ 126 (164)
+++.-+.+++|..+..+.+.++++-+.-+||-| +--++||+.
T Consensus 47 e~IrwlI~e~r~~l~~tensf~qItfmqaLqlL---lEve~eirt 88 (94)
T PF00601_consen 47 EEIRWLIEEHRHRLKITENSFEQITFMQALQLL---LEVEQEIRT 88 (94)
T ss_dssp HHHHHHHHHHHHC----TTSHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH---HHHHHHHHH
Confidence 456677789999998778888888777666654 555666654
No 19
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=24.75 E-value=81 Score=18.29 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=12.7
Q ss_pred hHHHHHHHHHhhhCC
Q 048547 145 LYATSLEFRLLRQHG 159 (164)
Q Consensus 145 L~~~AL~FRLLRqhG 159 (164)
|--.|+.|=|||-+|
T Consensus 15 lvGla~Gf~LLkiQG 29 (31)
T PF08041_consen 15 LVGLALGFVLLKIQG 29 (31)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhheeec
Confidence 556799999999887
No 20
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=23.61 E-value=97 Score=19.57 Aligned_cols=23 Identities=39% Similarity=0.729 Sum_probs=18.6
Q ss_pred chhhHHHHHHHhCcccchHHHHHHHH
Q 048547 103 NQLELIDSLQRLGLAYHFETEIRNIL 128 (164)
Q Consensus 103 e~L~lID~LQRLGIsyhFe~EI~~~L 128 (164)
++|.+|=.++.||.+ =+||++.|
T Consensus 2 ~rL~~I~~~r~lGfs---L~eI~~~l 24 (65)
T PF09278_consen 2 ERLQFIRRLRELGFS---LEEIRELL 24 (65)
T ss_dssp HHHHHHHHHHHTT-----HHHHHHHH
T ss_pred hHHHHHHHHHHcCCC---HHHHHHHH
Confidence 578899999999977 47999998
No 21
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=23.05 E-value=41 Score=26.99 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=16.8
Q ss_pred CCChHHHHHHHHHhhhCCCCCC
Q 048547 142 KENLYATSLEFRLLRQHGYPVS 163 (164)
Q Consensus 142 ~~DL~~~AL~FRLLRqhGY~VS 163 (164)
+....--.|-.+|||+-||+|.
T Consensus 47 G~C~elN~lf~~lL~~lGf~v~ 68 (240)
T PF00797_consen 47 GYCFELNGLFYWLLRELGFDVT 68 (240)
T ss_dssp B-HHHHHHHHHHHHHHCT-EEE
T ss_pred eEhHHHHHHHHHHHHHCCCeEE
Confidence 3467778889999999999985
No 22
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=22.92 E-value=1.4e+02 Score=18.14 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=20.0
Q ss_pred HHHHHHHhCcccchHHHHHHHHHHHHh
Q 048547 107 LIDSLQRLGLAYHFETEIRNILHDIYN 133 (164)
Q Consensus 107 lID~LQRLGIsyhFe~EI~~~L~~i~~ 133 (164)
.+++|.-|| |-+.||+.++..+..
T Consensus 6 ~~~AL~~LG---y~~~e~~~av~~~~~ 29 (47)
T PF07499_consen 6 ALEALISLG---YSKAEAQKAVSKLLE 29 (47)
T ss_dssp HHHHHHHTT---S-HHHHHHHHHHHHH
T ss_pred HHHHHHHcC---CCHHHHHHHHHHhhc
Confidence 578899999 557899999999975
No 23
>PF01963 TraB: TraB family; InterPro: IPR002816 In prokaryotes, for example Enterococcus faecalis (Streptococcus faecalis), the conjugative transfer of certain plasmids is controlled by peptide pheromones []. Plasmid free recipient cells secret plasmid specific oligopeptides, termed sex pheromones. They induce bacterial clumping and specifically activate the conjugative transfer of the corresponding plasmid. Once recipient cells acquire the plasmid they start to produce a pheromone inhibitor to block the activity of the pheromone and to prevent plasmid containing cells from clumping; they also become donor cells able to transfer the plasmid to plasmid free recipient cells. Examples of such plasmid-pheromone systems are bacteriocin plasmid pPD1 [], haemolysin/bacteriocin plasmid, pAD1 [], tetracycline-resistance plasmid, pCF10 [], and the haemolysin/bacteriocin plasmid, pOB1 []. TraB in combination with another factor contributes to pheromone shutdown in cells that have acquired a plasmid. It exact function has not yet been determined [, ]. This entry also contains plant and mammalian proteins, suggesting that these Trab-related proteins may have a somewhat wider or different function in eukaryotes.
Probab=22.44 E-value=38 Score=27.21 Aligned_cols=13 Identities=46% Similarity=0.882 Sum_probs=10.9
Q ss_pred HHHhhhCCCCCCC
Q 048547 152 FRLLRQHGYPVSQ 164 (164)
Q Consensus 152 FRLLRqhGY~VS~ 164 (164)
-.+||+.||.|.+
T Consensus 246 l~lLr~~Gy~V~~ 258 (259)
T PF01963_consen 246 LDLLRKKGYTVEP 258 (259)
T ss_pred HHHHHhCCceeec
Confidence 4799999999875
No 24
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=21.84 E-value=1.9e+02 Score=22.07 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=17.1
Q ss_pred CChHHHHHHHHHhhhCCCCC
Q 048547 143 ENLYATSLEFRLLRQHGYPV 162 (164)
Q Consensus 143 ~DL~~~AL~FRLLRqhGY~V 162 (164)
.+|--++=.++.||..||..
T Consensus 116 ~~l~~i~~~y~~L~~~G~~f 135 (144)
T cd03568 116 PSLSLMSDLYKKLKNEGPDL 135 (144)
T ss_pred cccHHHHHHHHHHHHcCCCC
Confidence 47878888899999999975
No 25
>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function. This domain has seven highly conserved glycines. A multiple alignment of a small subset of D111/G-patch domains is shown in Fig. 2b of [].; GO: 0003676 nucleic acid binding, 0005622 intracellular
Probab=21.29 E-value=64 Score=19.69 Aligned_cols=13 Identities=31% Similarity=0.863 Sum_probs=11.2
Q ss_pred HHHHHHhhhCCCC
Q 048547 149 SLEFRLLRQHGYP 161 (164)
Q Consensus 149 AL~FRLLRqhGY~ 161 (164)
+..||||++.||.
T Consensus 3 ~~g~~lm~kmGw~ 15 (45)
T PF01585_consen 3 SIGFKLMKKMGWK 15 (45)
T ss_pred cHHHHHHHHCCCC
Confidence 4679999999996
No 26
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=21.04 E-value=74 Score=19.63 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=5.9
Q ss_pred HHhhhCCCCCC
Q 048547 153 RLLRQHGYPVS 163 (164)
Q Consensus 153 RLLRqhGY~VS 163 (164)
.-|+++||++|
T Consensus 26 ~~l~~~g~~is 36 (48)
T PF11848_consen 26 DRLQQAGFRIS 36 (48)
T ss_pred HHHHHcCcccC
Confidence 33456666655
No 27
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=21.01 E-value=92 Score=27.45 Aligned_cols=35 Identities=29% Similarity=0.586 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcccccccccccchhhHHHHHHHhCcccchHH
Q 048547 80 YKRREEELKGKVMTTIKDVTEPLNQLELIDSLQRLGLAYHFET 122 (164)
Q Consensus 80 ~~~~~e~LKeeVr~ml~~~~d~~e~L~lID~LQRLGIsyhFe~ 122 (164)
.+.++++|-.||-. .+|+.+|. +|||+||-..+|.
T Consensus 45 ~R~kieklSsEVVD-----SNPYSRLM---ALqRMgIV~dYEr 79 (422)
T KOG2336|consen 45 RRSKIEKLSSEVVD-----SNPYSRLM---ALQRMGIVDDYER 79 (422)
T ss_pred hhHHHHHhhhhHhc-----CChHHHHH---HHHHhcchhhHHH
Confidence 34567777666633 67888886 8999999776653
No 28
>PF11121 DUF2639: Protein of unknown function (DUF2639); InterPro: IPR022580 This family is conserved in the Bacillaceae family. Several members are named as being YflJ, but the function is not known.
Probab=20.34 E-value=71 Score=19.56 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=16.2
Q ss_pred hhHHHHHHHhCcccchHHHHH
Q 048547 105 LELIDSLQRLGLAYHFETEIR 125 (164)
Q Consensus 105 L~lID~LQRLGIsyhFe~EI~ 125 (164)
=|.|..|..+||.+|=..-++
T Consensus 6 Gw~V~eLKk~GI~~h~~rKle 26 (40)
T PF11121_consen 6 GWYVKELKKLGIRRHEGRKLE 26 (40)
T ss_pred hHHHHHHHHhCccccchhHHH
Confidence 478999999999999644443
No 29
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=20.27 E-value=1.7e+02 Score=27.96 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=17.4
Q ss_pred CCCchHHHHHHHHHHHHHhccccc
Q 048547 73 SNYTDETYKRREEELKGKVMTTIK 96 (164)
Q Consensus 73 ~~~~~~~~~~~~e~LKeeVr~ml~ 96 (164)
..|++++|.+..+++++.|+.++.
T Consensus 125 ~~Ytdeey~~el~~i~e~~~~~v~ 148 (611)
T PRK02048 125 LEYTDEEYAQEIQKIRDRFVPFLN 148 (611)
T ss_pred cccchhhhhhhhhhHHHHHHHHHH
Confidence 346788888888888877776653
Done!