BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048549
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GUZ|A Chain A, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|C Chain C, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|E Chain E, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|G Chain G, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|I Chain I, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|K Chain K, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|M Chain M, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|O Chain O, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
Length = 71
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 33 FEGSFQPVMTRREAAMILGVRESTPTEK-VKESHRRVMVANHPDAGGSHYLASKINEAKA 91
+G F P M +EA IL + E+T T+K +KE HR++M+ANHPD GGS +LA+KINEAK
Sbjct: 3 LKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKD 62
Query: 92 IMLRR 96
+ +R
Sbjct: 63 FLEKR 67
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Query: 49 ILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLAS----KINEAKAIMLRRTKRS 100
+LG+ ++ ++ +K+S+R++ + HPD + A+ +IN A AI+ TKR+
Sbjct: 22 VLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77
>pdb|2GUZ|B Chain B, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|D Chain D, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|F Chain F, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|H Chain H, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|J Chain J, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|L Chain L, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|N Chain N, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|P Chain P, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
Length = 65
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 41 MTRREAAMILGVRES---TPTEKVKESHRRVMVANHPDAGGSHYLASKI 86
MT E+ IL + ES +K+ + N + GGS YL SK+
Sbjct: 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKV 49
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 49 ILGVRESTPTEKVKESHRRVMVANHPD 75
ILGV E +K+++RR+ + HPD
Sbjct: 12 ILGVSRGASDEDLKKAYRRLALKFHPD 38
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 49 ILGVRESTPTEKVKESHRRVMVANHPD 75
+LGV+ S E +K+++R++ + HPD
Sbjct: 14 VLGVQASASPEDIKKAYRKLALRWHPD 40
>pdb|1FAF|A Chain A, Nmr Structure Of The N-Terminal J Domain Of Murine
Polyomavirus T Antigens
Length = 79
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 60 KVKESHRRVMVANHPDAGGSHYLASKIN 87
++++++++ + HPD GGSH L ++N
Sbjct: 29 RMQQAYKQQSLLLHPDKGGSHALMQELN 56
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 20/27 (74%)
Query: 49 ILGVRESTPTEKVKESHRRVMVANHPD 75
+LGV+ + E++K+++R++ + HPD
Sbjct: 11 VLGVKPNATQEELKKAYRKLALKYHPD 37
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKA 91
M ++ ILGV+ + + +K ++RR+ HPD SK N+A+A
Sbjct: 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPD-------VSKENDAEA 68
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 40 VMTRREAAMILGVRESTPTEKVKESHRRVMVANHPD---AGGSHYLASKINEAKAIMLRR 96
+ +++ +LGV+ ++V +++R++ V HPD A GS + A+ +L+
Sbjct: 23 IRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKN 82
Query: 97 TKRSNSA 103
K S+
Sbjct: 83 IKSGPSS 89
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 22/33 (66%)
Query: 43 RREAAMILGVRESTPTEKVKESHRRVMVANHPD 75
+R+ ILGV+ + +++ +++R++ + HPD
Sbjct: 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 49 ILGVRESTPTEKVKESHRRVMVANHPD 75
ILGV ++ +++++++R+ + HPD
Sbjct: 8 ILGVSKTAEEREIRKAYKRLAMKYHPD 34
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 22/33 (66%)
Query: 43 RREAAMILGVRESTPTEKVKESHRRVMVANHPD 75
+R+ ILGV+ + +++ +++R++ + HPD
Sbjct: 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 49 ILGVRESTPTEKVKESHRRVMVANHPD 75
ILGV ++ +++++++R+ + HPD
Sbjct: 8 ILGVSKTAEEREIRKAYKRLAMKYHPD 34
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 49 ILGVRESTPTEKVKESHRRVMVANHPD 75
ILGV ++ +++++++R+ + HPD
Sbjct: 8 ILGVSKTAEEREIRKAYKRLAMKYHPD 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.127 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,508,876
Number of Sequences: 62578
Number of extensions: 74205
Number of successful extensions: 207
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 17
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)