Query 048549
Match_columns 104
No_of_seqs 109 out of 1348
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 10:32:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0723 Molecular chaperone (D 99.9 1.1E-25 2.3E-30 147.4 9.7 96 2-97 10-109 (112)
2 PTZ00100 DnaJ chaperone protei 99.9 7.8E-25 1.7E-29 146.2 11.6 95 1-95 8-116 (116)
3 PF03656 Pam16: Pam16; InterP 99.9 4.4E-22 9.5E-27 135.0 6.0 98 1-98 9-112 (127)
4 COG0484 DnaJ DnaJ-class molecu 99.8 1.2E-18 2.7E-23 135.3 6.1 61 41-101 1-65 (371)
5 KOG3442 Uncharacterized conser 99.7 6.4E-18 1.4E-22 113.4 7.2 98 1-98 8-113 (132)
6 PTZ00037 DnaJ_C chaperone prot 99.7 3.7E-17 8E-22 129.2 7.1 65 36-100 20-84 (421)
7 PHA03102 Small T antigen; Revi 99.7 1.1E-16 2.3E-21 111.7 6.9 60 42-101 3-64 (153)
8 KOG0713 Molecular chaperone (D 99.7 7.1E-17 1.5E-21 123.6 5.5 61 40-100 12-76 (336)
9 PRK14296 chaperone protein Dna 99.6 3E-16 6.4E-21 122.3 5.9 60 41-100 1-63 (372)
10 smart00271 DnaJ DnaJ molecular 99.6 8.2E-16 1.8E-20 90.4 6.2 53 45-97 2-59 (60)
11 cd06257 DnaJ DnaJ domain or J- 99.6 1.8E-15 3.8E-20 87.5 6.0 51 45-95 1-55 (55)
12 PF00226 DnaJ: DnaJ domain; I 99.6 2.3E-15 5E-20 89.9 6.4 56 45-100 1-61 (64)
13 PRK14288 chaperone protein Dna 99.6 1.2E-15 2.7E-20 118.7 5.6 57 44-100 3-63 (369)
14 PRK14286 chaperone protein Dna 99.6 1.4E-15 3.1E-20 118.4 5.6 60 41-100 1-64 (372)
15 PRK14279 chaperone protein Dna 99.6 1.9E-15 4.1E-20 118.5 5.8 58 43-100 8-69 (392)
16 PRK14299 chaperone protein Dna 99.6 2.5E-15 5.4E-20 113.7 5.9 60 41-100 1-63 (291)
17 PRK14282 chaperone protein Dna 99.6 2.7E-15 5.9E-20 116.7 5.6 60 41-100 1-65 (369)
18 PRK14287 chaperone protein Dna 99.6 3.4E-15 7.3E-20 116.3 6.0 60 41-100 1-63 (371)
19 PRK14276 chaperone protein Dna 99.6 5.8E-15 1.3E-19 115.2 6.2 60 41-100 1-63 (380)
20 KOG0712 Molecular chaperone (D 99.6 4.1E-15 8.8E-20 114.5 5.0 57 44-100 4-61 (337)
21 PRK14294 chaperone protein Dna 99.5 6.1E-15 1.3E-19 114.6 5.6 60 41-100 1-64 (366)
22 PRK14285 chaperone protein Dna 99.5 6.2E-15 1.3E-19 114.6 5.5 57 44-100 3-63 (365)
23 PRK14298 chaperone protein Dna 99.5 7.9E-15 1.7E-19 114.5 6.1 58 43-100 4-64 (377)
24 PRK10767 chaperone protein Dna 99.5 6.8E-15 1.5E-19 114.4 5.6 60 41-100 1-64 (371)
25 PRK14301 chaperone protein Dna 99.5 7.3E-15 1.6E-19 114.5 5.7 60 41-100 1-64 (373)
26 PRK14283 chaperone protein Dna 99.5 7.8E-15 1.7E-19 114.4 5.6 60 41-100 2-64 (378)
27 PRK14280 chaperone protein Dna 99.5 7.8E-15 1.7E-19 114.4 5.6 60 41-100 1-63 (376)
28 PRK14297 chaperone protein Dna 99.5 1E-14 2.2E-19 113.9 6.0 59 42-100 2-64 (380)
29 PRK14278 chaperone protein Dna 99.5 8.8E-15 1.9E-19 114.2 5.2 57 44-100 3-62 (378)
30 PRK14295 chaperone protein Dna 99.5 1.3E-14 2.9E-19 113.6 6.0 58 43-100 8-69 (389)
31 PRK14277 chaperone protein Dna 99.5 1.2E-14 2.6E-19 113.7 5.8 57 44-100 5-65 (386)
32 PRK10266 curved DNA-binding pr 99.5 1.9E-14 4.2E-19 109.5 5.6 60 41-100 1-63 (306)
33 PRK14281 chaperone protein Dna 99.5 2.2E-14 4.9E-19 112.5 5.8 57 44-100 3-63 (397)
34 PRK14291 chaperone protein Dna 99.5 3.6E-14 7.8E-19 110.9 6.4 57 44-100 3-62 (382)
35 KOG0717 Molecular chaperone (D 99.5 5.9E-14 1.3E-18 111.3 6.5 59 42-100 6-69 (508)
36 PRK14300 chaperone protein Dna 99.5 6.2E-14 1.3E-18 109.2 6.2 57 44-100 3-62 (372)
37 KOG0716 Molecular chaperone (D 99.5 1.2E-13 2.5E-18 103.5 7.2 59 42-100 29-91 (279)
38 PRK14284 chaperone protein Dna 99.5 6.2E-14 1.3E-18 109.8 5.9 56 45-100 2-61 (391)
39 PRK14289 chaperone protein Dna 99.5 7.5E-14 1.6E-18 109.1 5.8 60 41-100 2-65 (386)
40 TIGR02349 DnaJ_bact chaperone 99.5 8.9E-14 1.9E-18 107.4 6.1 56 45-100 1-59 (354)
41 PRK14290 chaperone protein Dna 99.5 8.6E-14 1.9E-18 108.2 5.9 57 44-100 3-64 (365)
42 PHA02624 large T antigen; Prov 99.5 1.5E-13 3.4E-18 112.6 7.5 60 43-102 10-71 (647)
43 PRK09430 djlA Dna-J like membr 99.5 2.2E-13 4.7E-18 102.3 7.4 58 39-96 195-263 (267)
44 PRK14292 chaperone protein Dna 99.4 1.6E-13 3.4E-18 106.7 6.6 56 45-100 3-61 (371)
45 KOG0721 Molecular chaperone (D 99.4 1.3E-13 2.9E-18 100.5 5.2 63 39-101 94-160 (230)
46 KOG0715 Molecular chaperone (D 99.4 1.7E-13 3.6E-18 104.0 5.4 62 39-100 38-102 (288)
47 PRK14293 chaperone protein Dna 99.4 2.9E-13 6.3E-18 105.5 5.7 57 44-100 3-62 (374)
48 KOG0718 Molecular chaperone (D 99.4 5.8E-13 1.3E-17 105.9 6.7 60 41-100 6-72 (546)
49 KOG0691 Molecular chaperone (D 99.4 8.9E-13 1.9E-17 100.3 5.8 58 43-100 4-65 (296)
50 PTZ00341 Ring-infected erythro 99.3 1.4E-12 3.1E-17 110.8 6.1 63 38-100 567-632 (1136)
51 COG2214 CbpA DnaJ-class molecu 99.3 3E-12 6.5E-17 89.5 6.5 59 42-100 4-67 (237)
52 PRK01356 hscB co-chaperone Hsc 99.3 9.8E-12 2.1E-16 87.7 6.2 56 45-100 3-67 (166)
53 PRK05014 hscB co-chaperone Hsc 99.3 9.2E-12 2E-16 88.2 5.9 57 45-101 2-69 (171)
54 TIGR03835 termin_org_DnaJ term 99.2 1.1E-11 2.3E-16 103.6 6.2 57 44-100 2-61 (871)
55 PRK00294 hscB co-chaperone Hsc 99.2 1.6E-11 3.6E-16 87.1 5.7 60 41-100 1-71 (173)
56 KOG1789 Endocytosis protein RM 99.2 5.8E-11 1.3E-15 102.0 9.7 82 9-103 1259-1346(2235)
57 KOG0719 Molecular chaperone (D 99.2 1.5E-11 3.1E-16 90.9 4.7 57 44-100 14-76 (264)
58 PRK03578 hscB co-chaperone Hsc 99.2 3.2E-11 7E-16 85.8 5.8 57 44-100 6-73 (176)
59 KOG0722 Molecular chaperone (D 99.0 1.8E-10 3.9E-15 86.4 3.4 59 43-101 32-93 (329)
60 KOG0720 Molecular chaperone (D 99.0 3.3E-10 7.2E-15 90.1 4.2 58 43-100 234-294 (490)
61 KOG0624 dsRNA-activated protei 99.0 5.8E-10 1.3E-14 87.2 5.2 59 43-101 393-458 (504)
62 PRK01773 hscB co-chaperone Hsc 99.0 1.3E-09 2.8E-14 77.5 5.4 56 45-100 3-69 (173)
63 COG5407 SEC63 Preprotein trans 98.8 8.7E-09 1.9E-13 82.4 6.6 57 45-101 99-164 (610)
64 KOG0550 Molecular chaperone (D 98.8 4.8E-09 1E-13 83.1 4.6 59 43-101 372-435 (486)
65 TIGR00714 hscB Fe-S protein as 98.8 1E-08 2.2E-13 71.7 5.2 45 56-100 3-56 (157)
66 KOG0714 Molecular chaperone (D 98.8 5.2E-09 1.1E-13 76.4 3.8 58 44-101 3-65 (306)
67 KOG1150 Predicted molecular ch 98.7 1.8E-08 3.8E-13 73.4 4.3 55 44-98 53-112 (250)
68 KOG0568 Molecular chaperone (D 98.6 1.5E-07 3.3E-12 70.1 6.3 53 43-95 46-102 (342)
69 COG5269 ZUO1 Ribosome-associat 97.9 2E-05 4.4E-10 60.1 5.3 58 44-101 43-109 (379)
70 COG1076 DjlA DnaJ-domain-conta 97.4 0.00023 4.9E-09 50.3 3.9 50 44-93 113-173 (174)
71 PF13446 RPT: A repeated domai 97.2 0.002 4.3E-08 38.1 6.2 49 40-95 1-49 (62)
72 KOG3192 Mitochondrial J-type c 97.1 0.0013 2.8E-08 46.4 5.0 60 42-101 6-76 (168)
73 KOG0431 Auxilin-like protein a 96.5 0.0034 7.4E-08 50.7 4.0 23 54-76 398-420 (453)
74 PF11833 DUF3353: Protein of u 95.6 0.023 5.1E-07 41.1 4.3 42 53-98 1-42 (194)
75 COG1076 DjlA DnaJ-domain-conta 94.5 0.032 6.9E-07 39.4 2.4 44 57-100 16-68 (174)
76 PF14687 DUF4460: Domain of un 87.7 0.8 1.7E-05 30.4 3.3 42 55-96 5-54 (112)
77 KOG0724 Zuotin and related mol 61.9 12 0.00027 28.5 3.7 42 56-97 4-53 (335)
78 COG5552 Uncharacterized conser 59.0 42 0.00091 21.0 5.8 30 47-76 6-39 (88)
79 PF03820 Mtc: Tricarboxylate c 55.0 15 0.00033 28.4 3.2 40 38-77 24-69 (308)
80 PF11300 DUF3102: Protein of u 52.8 20 0.00043 24.4 3.1 15 41-55 90-104 (130)
81 KOG3767 Sideroflexin [General 48.8 21 0.00045 28.0 3.0 40 38-77 42-87 (328)
82 PF12728 HTH_17: Helix-turn-he 47.7 12 0.00026 20.4 1.3 15 41-55 2-16 (51)
83 COG1072 CoaA Panthothenate kin 45.2 41 0.0009 25.9 4.1 36 38-73 22-57 (283)
84 PF07709 SRR: Seven Residue Re 44.8 22 0.00048 14.7 1.6 12 83-94 3-14 (14)
85 smart00427 H2B Histone H2B. 44.0 33 0.00071 22.0 2.9 15 66-80 8-22 (89)
86 TIGR01764 excise DNA binding d 43.4 16 0.00035 19.0 1.3 14 41-54 2-15 (49)
87 PF04967 HTH_10: HTH DNA bindi 41.1 26 0.00055 20.1 1.9 32 38-69 21-52 (53)
88 PRK13798 putative OHCU decarbo 40.0 32 0.0007 24.1 2.7 12 81-92 99-110 (166)
89 PF08447 PAS_3: PAS fold; Int 39.8 9.6 0.00021 22.4 -0.0 29 44-76 6-35 (91)
90 PRK05439 pantothenate kinase; 39.5 1.1E+02 0.0023 23.8 5.7 36 37-72 25-60 (311)
91 PF01466 Skp1: Skp1 family, di 39.5 44 0.00095 20.2 3.0 24 40-63 45-68 (78)
92 PF13543 KSR1-SAM: SAM like do 38.8 1.3E+02 0.0027 20.5 5.8 57 37-93 63-128 (129)
93 cd01388 SOX-TCF_HMG-box SOX-TC 37.8 68 0.0015 18.7 3.6 35 63-98 14-48 (72)
94 KOG2320 RAS effector RIN1 (con 37.3 46 0.001 28.4 3.5 42 49-95 394-435 (651)
95 TIGR00824 EIIA-man PTS system, 37.0 84 0.0018 20.3 4.2 36 47-82 30-74 (116)
96 PF07739 TipAS: TipAS antibiot 35.7 66 0.0014 20.2 3.5 38 50-90 50-88 (118)
97 PRK09649 RNA polymerase sigma 35.2 40 0.00087 23.2 2.6 38 38-75 144-181 (185)
98 PF08897 DUF1841: Domain of un 33.5 1.6E+02 0.0035 20.3 5.3 63 10-72 7-97 (137)
99 KOG3960 Myogenic helix-loop-he 33.0 31 0.00067 26.4 1.7 14 82-95 129-142 (284)
100 PF05344 DUF746: Domain of Unk 32.5 84 0.0018 18.9 3.3 37 38-75 11-47 (65)
101 PRK12547 RNA polymerase sigma 32.5 51 0.0011 22.1 2.7 33 40-72 128-160 (164)
102 COG2879 Uncharacterized small 30.2 49 0.0011 19.9 2.0 25 47-78 17-41 (65)
103 PF05379 Peptidase_C23: Carlav 29.6 58 0.0013 20.5 2.4 54 2-55 7-60 (89)
104 PF08673 RsbU_N: Phosphoserine 29.4 84 0.0018 19.3 3.0 24 53-76 32-55 (77)
105 PLN00158 histone H2B; Provisio 29.1 78 0.0017 21.2 3.0 16 65-80 33-48 (116)
106 PTZ00463 histone H2B; Provisio 29.0 79 0.0017 21.2 3.0 16 65-80 34-49 (117)
107 PRK12529 RNA polymerase sigma 29.0 64 0.0014 22.0 2.7 31 39-69 142-172 (178)
108 PF14019 DUF4235: Protein of u 28.6 60 0.0013 19.9 2.3 21 2-22 9-29 (78)
109 cd04762 HTH_MerR-trunc Helix-T 28.3 40 0.00086 17.2 1.3 14 41-54 1-14 (49)
110 TIGR03180 UraD_2 OHCU decarbox 28.1 70 0.0015 22.2 2.8 11 81-91 94-104 (158)
111 TIGR00554 panK_bact pantothena 27.7 1.3E+02 0.0029 22.9 4.5 35 38-72 2-36 (290)
112 PF13374 TPR_10: Tetratricopep 27.6 40 0.00087 16.6 1.2 17 59-75 26-42 (42)
113 cd06170 LuxR_C_like C-terminal 27.0 62 0.0013 17.1 2.0 30 39-72 14-43 (57)
114 PF10041 DUF2277: Uncharacteri 27.0 1.6E+02 0.0036 18.3 6.4 55 47-101 6-67 (78)
115 KOG1573 Aldehyde reductase [Ge 26.3 1.3E+02 0.0028 21.7 3.9 39 38-76 70-115 (204)
116 PF14893 PNMA: PNMA 26.2 63 0.0014 25.3 2.5 28 40-67 14-41 (331)
117 cd04761 HTH_MerR-SF Helix-Turn 26.0 45 0.00097 17.5 1.2 30 41-76 1-30 (49)
118 PRK09636 RNA polymerase sigma 25.7 1.5E+02 0.0033 22.0 4.5 35 38-72 129-163 (293)
119 TIGR03164 UHCUDC OHCU decarbox 25.6 1E+02 0.0023 21.3 3.3 10 82-91 95-104 (157)
120 smart00421 HTH_LUXR helix_turn 25.3 71 0.0015 16.7 2.0 30 39-72 17-46 (58)
121 PF00505 HMG_box: HMG (high mo 25.1 97 0.0021 17.4 2.7 35 62-97 12-46 (69)
122 PF13950 Epimerase_Csub: UDP-g 25.0 1.5E+02 0.0033 17.2 3.8 33 42-75 28-60 (62)
123 COG3755 Uncharacterized protei 24.0 1E+02 0.0022 21.0 2.9 33 56-91 48-81 (127)
124 PF15178 TOM_sub5: Mitochondri 23.7 1E+02 0.0022 17.5 2.4 23 48-70 3-25 (51)
125 PF04282 DUF438: Family of unk 23.0 45 0.00098 20.3 0.9 26 49-74 6-31 (71)
126 PF04512 Baculo_PEP_N: Baculov 22.4 80 0.0017 20.4 2.1 34 42-76 18-51 (97)
127 PRK08570 rpl19e 50S ribosomal 22.4 1.3E+02 0.0028 21.1 3.2 35 56-90 36-70 (150)
128 PF08281 Sigma70_r4_2: Sigma-7 22.3 49 0.0011 17.9 1.0 28 37-68 23-50 (54)
129 COG1725 Predicted transcriptio 21.4 2E+02 0.0044 19.3 4.0 30 38-71 33-62 (125)
130 TIGR03759 conj_TIGR03759 integ 21.1 2.2E+02 0.0048 20.9 4.3 72 14-96 16-88 (200)
131 KOG3219 Transcription initiati 20.6 1E+02 0.0022 22.5 2.5 29 43-71 150-181 (195)
132 cd00481 Ribosomal_L19e Ribosom 20.3 1.5E+02 0.0033 20.6 3.2 35 56-90 33-67 (145)
No 1
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-25 Score=147.44 Aligned_cols=96 Identities=54% Similarity=0.834 Sum_probs=90.5
Q ss_pred hHhHHHHHHHHHHH----HHHHHHhcCCchhhhhhhcCCCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC
Q 048549 2 AVAAAAYAGKYGIT----AWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAG 77 (104)
Q Consensus 2 ~~~~~~~~~ra~~~----a~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~ 77 (104)
+|+++++.||++++ +|+.+...+..+...+|++++|++.|+..||..||||+++++.+.||++||+++..||||+|
T Consensus 10 gvaa~a~ag~~gl~~~~~~~qa~~~~~~~~~~~~~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~G 89 (112)
T KOG0723|consen 10 GVAALAFAGRYGLWMKTLAKQAFKTLPKGPFFGAFYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRG 89 (112)
T ss_pred HHHHHHHhchhhhhchhHHHHHHHHcCCCcchhhhhhcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCC
Confidence 57888999999999 88888888878888999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcchh
Q 048549 78 GSHYLASKINEAKAIMLRRT 97 (104)
Q Consensus 78 g~~~~~~~i~~Aye~L~~~~ 97 (104)
||+|+..+||||+++|....
T Consensus 90 GSPYlAsKINEAKdlLe~~~ 109 (112)
T KOG0723|consen 90 GSPYLASKINEAKDLLEGTS 109 (112)
T ss_pred CCHHHHHHHHHHHHHHhccc
Confidence 99999999999999998653
No 2
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.93 E-value=7.8e-25 Score=146.24 Aligned_cols=95 Identities=33% Similarity=0.598 Sum_probs=82.1
Q ss_pred ChHhHHHHHHHHHHHHHHHHHhcCCch----------hhhhhh----cCCCCCCCCHHHHHHHhCCCCCCChHHHHHHHH
Q 048549 1 MAVAAAAYAGKYGITAWQAFKAQTPTA----------RMRKVF----EGSFQPVMTRREAAMILGVRESTPTEKVKESHR 66 (104)
Q Consensus 1 ~~~~~~~~~~ra~~~a~~~~~~~~~~~----------~~~~~~----~~~~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr 66 (104)
|+++++.+++|+++++|++.......+ ..+.++ ..+++..|+.+|||+||||++++|.+||+++||
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~~As~~eIkkaYR 87 (116)
T PTZ00100 8 LTFGGGVLAVRYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISPTASKERIREAHK 87 (116)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhccCccccCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 356777999999999999877665421 233332 568999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q 048549 67 RVMVANHPDAGGSHYLASKINEAKAIMLR 95 (104)
Q Consensus 67 ~l~~~~HPDk~g~~~~~~~i~~Aye~L~~ 95 (104)
+|++++|||++|+++.+++|++|||+|.+
T Consensus 88 rLa~~~HPDkgGs~~~~~kIneAyevL~k 116 (116)
T PTZ00100 88 QLMLRNHPDNGGSTYIASKVNEAKDLLLK 116 (116)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999964
No 3
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=99.86 E-value=4.4e-22 Score=134.97 Aligned_cols=98 Identities=29% Similarity=0.358 Sum_probs=48.0
Q ss_pred ChHhHHHHHHHHHHHHHHHHHhcCCch-hh-hhh----hcCCCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCC
Q 048549 1 MAVAAAAYAGKYGITAWQAFKAQTPTA-RM-RKV----FEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHP 74 (104)
Q Consensus 1 ~~~~~~~~~~ra~~~a~~~~~~~~~~~-~~-~~~----~~~~~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HP 74 (104)
|+|+|+.++||||.+||||+..+.+.. .. +.. ........||.+||+.||||++..++++|.++|.+|+..|+|
T Consensus 9 iiv~G~~vvgRAf~~AyrQA~aa~~~a~~a~~~a~~~~~a~~~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~ 88 (127)
T PF03656_consen 9 IIVTGGQVVGRAFTQAYRQAAAAAQAAAGAGQNASARGAAASNSKGMTLDEARQILNVKEELSREEIQKRYKHLFKANDP 88 (127)
T ss_dssp ------------------------------------------------HHHHHHHHT--G--SHHHHHHHHHHHHHHT-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCC
Confidence 579999999999999999988554221 11 111 111233479999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcchhc
Q 048549 75 DAGGSHYLASKINEAKAIMLRRTK 98 (104)
Q Consensus 75 Dk~g~~~~~~~i~~Aye~L~~~~~ 98 (104)
++|||+|++++|..|+|+|..+.+
T Consensus 89 ~kGGSfYLQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 89 SKGGSFYLQSKVFRAKERLEQELK 112 (127)
T ss_dssp CCTS-HHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 4
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.2e-18 Score=135.32 Aligned_cols=61 Identities=30% Similarity=0.437 Sum_probs=55.7
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcchhcccC
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-S---HYLASKINEAKAIMLRRTKRSN 101 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~---~~~~~~i~~Aye~L~~~~~r~~ 101 (104)
|...++|+||||+.++|.+|||+|||+|+++||||+|. + .++|++|++|||+|+++++|+-
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~ 65 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAA 65 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45568899999999999999999999999999999986 4 4789999999999999999863
No 5
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=6.4e-18 Score=113.36 Aligned_cols=98 Identities=24% Similarity=0.311 Sum_probs=82.2
Q ss_pred ChHhHHHHHHHHHHHHHHHHHhcCCchhhhhh-hcC-------CCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHh
Q 048549 1 MAVAAAAYAGKYGITAWQAFKAQTPTARMRKV-FEG-------SFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVAN 72 (104)
Q Consensus 1 ~~~~~~~~~~ra~~~a~~~~~~~~~~~~~~~~-~~~-------~~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~ 72 (104)
|||.|+.++||||.+||||...+.......+. -+. .....||.+|+.+||+|++..+.++|.++|.+|+..|
T Consensus 8 iIi~G~qvvgrAf~~A~RQeia~s~~aa~~~~a~k~g~~~~~~~~~~~iTlqEa~qILnV~~~ln~eei~k~yehLFevN 87 (132)
T KOG3442|consen 8 IIIMGSQVVGRAFVQAYRQEIAASQQAAARQAAGKSGTRSAEANSNGKITLQEAQQILNVKEPLNREEIEKRYEHLFEVN 87 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccccHHHHhhHhCCCCCCCHHHHHHHHHHHHhcc
Confidence 58999999999999999998887644332211 011 1124599999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcchhc
Q 048549 73 HPDAGGSHYLASKINEAKAIMLRRTK 98 (104)
Q Consensus 73 HPDk~g~~~~~~~i~~Aye~L~~~~~ 98 (104)
.+.+|||+|++++|-.|.|.|..+.+
T Consensus 88 dkskGGSFYLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 88 DKSKGGSFYLQSKVFRAKERLDEELK 113 (132)
T ss_pred CcccCcceeehHHHHHHHHHHHHHHH
Confidence 99999999999999999999987655
No 6
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.69 E-value=3.7e-17 Score=129.22 Aligned_cols=65 Identities=20% Similarity=0.347 Sum_probs=59.9
Q ss_pred CCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhccc
Q 048549 36 SFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 36 ~~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~r~ 100 (104)
.....|...++|+||||++++|.+|||++||+|++++|||++++.+.|++|++||++|+++.+|+
T Consensus 20 ~~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~ 84 (421)
T PTZ00037 20 RRKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRK 84 (421)
T ss_pred cccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHH
Confidence 34455667899999999999999999999999999999999999999999999999999999885
No 7
>PHA03102 Small T antigen; Reviewed
Probab=99.68 E-value=1.1e-16 Score=111.72 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=56.8
Q ss_pred CHHHHHHHhCCCCCC--ChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhcccC
Q 048549 42 TRREAAMILGVREST--PTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSN 101 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~--s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~r~~ 101 (104)
..++++++|||++++ |.++||++||++++++|||+||+.+.|++||+||++|.++.+|..
T Consensus 3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence 357999999999999 999999999999999999999999999999999999999988765
No 8
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=7.1e-17 Score=123.60 Aligned_cols=61 Identities=25% Similarity=0.405 Sum_probs=55.5
Q ss_pred CCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHHhcchhccc
Q 048549 40 VMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH----YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~----~~~~~i~~Aye~L~~~~~r~ 100 (104)
..+.++.|+||||+.++|.+|||++||+|++++|||||.+. +.|++|+.|||+|+++.+|.
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk 76 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRK 76 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34557899999999999999999999999999999998643 78999999999999999986
No 9
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=3e-16 Score=122.29 Aligned_cols=60 Identities=27% Similarity=0.515 Sum_probs=54.6
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG---SHYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Aye~L~~~~~r~ 100 (104)
|+..++|+||||++++|.+||+++||+|++++|||++. ..+.|++|++||++|+++.+|+
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~ 63 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRK 63 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhh
Confidence 45568999999999999999999999999999999974 3478999999999999999885
No 10
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.63 E-value=8.2e-16 Score=90.44 Aligned_cols=53 Identities=25% Similarity=0.375 Sum_probs=49.1
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHhcchh
Q 048549 45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-----SHYLASKINEAKAIMLRRT 97 (104)
Q Consensus 45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-----~~~~~~~i~~Aye~L~~~~ 97 (104)
++|+||||+++++.++|+++|+++++.+|||+++ ..+.|.+|++||++|.++.
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 5899999999999999999999999999999987 3478999999999999874
No 11
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.61 E-value=1.8e-15 Score=87.49 Aligned_cols=51 Identities=27% Similarity=0.394 Sum_probs=47.2
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcc
Q 048549 45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLR 95 (104)
Q Consensus 45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~ 95 (104)
++|++|||+++++.++|+++|++|++++|||++++ .+.|.+|++||++|++
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999999999874 5789999999999974
No 12
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.61 E-value=2.3e-15 Score=89.87 Aligned_cols=56 Identities=30% Similarity=0.453 Sum_probs=51.4
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC-CCH----HHHHHHHHHHHHhcchhccc
Q 048549 45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAG-GSH----YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~-g~~----~~~~~i~~Aye~L~~~~~r~ 100 (104)
++|+||||+++++.++|+++|+++++.+|||++ ++. +.+..|++||++|.++.+|+
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~ 61 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR 61 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence 589999999999999999999999999999995 555 78999999999999998774
No 13
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.60 E-value=1.2e-15 Score=118.69 Aligned_cols=57 Identities=28% Similarity=0.349 Sum_probs=52.5
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcchhccc
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-S---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
.++|+||||++++|.+||+++||+|++++|||++. + .+.|++|++||++|+++.+|+
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~ 63 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHH
Confidence 47899999999999999999999999999999975 3 378999999999999999885
No 14
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.4e-15 Score=118.42 Aligned_cols=60 Identities=30% Similarity=0.404 Sum_probs=54.4
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-S---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
|+..++|+||||++++|.+||+++||+|++++|||++. + .+.|++|++||++|+++.+|+
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 64 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ 64 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence 45568999999999999999999999999999999975 2 378999999999999998884
No 15
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.9e-15 Score=118.47 Aligned_cols=58 Identities=24% Similarity=0.360 Sum_probs=53.5
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcchhccc
Q 048549 43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-S---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
..++|+||||++++|.+||+++||+|++++|||+++ + .+.|++|++||++|+++.+|+
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~ 69 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence 369999999999999999999999999999999975 3 378999999999999999885
No 16
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=2.5e-15 Score=113.65 Aligned_cols=60 Identities=27% Similarity=0.422 Sum_probs=54.1
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
|...++|+||||++++|.+||+++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~ 63 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRR 63 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHH
Confidence 445689999999999999999999999999999999854 378999999999999998774
No 17
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.7e-15 Score=116.67 Aligned_cols=60 Identities=25% Similarity=0.370 Sum_probs=54.1
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
|...++|+||||++++|.+||+++||+|++++|||++.. .+.|++|++||++|+++.+|+
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 65 (369)
T PRK14282 1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA 65 (369)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHH
Confidence 445689999999999999999999999999999999743 368999999999999999885
No 18
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=3.4e-15 Score=116.31 Aligned_cols=60 Identities=23% Similarity=0.393 Sum_probs=54.1
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
|...++|++|||++++|.+||+++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~ 63 (371)
T PRK14287 1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKA 63 (371)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHH
Confidence 344689999999999999999999999999999999854 368999999999999998885
No 19
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=5.8e-15 Score=115.24 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=54.3
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
|...++|+||||++++|.+||+++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 63 (380)
T PRK14276 1 MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRA 63 (380)
T ss_pred CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhh
Confidence 344689999999999999999999999999999999754 478999999999999999885
No 20
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.1e-15 Score=114.51 Aligned_cols=57 Identities=25% Similarity=0.359 Sum_probs=52.7
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhcchhccc
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH-YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-~~~~~i~~Aye~L~~~~~r~ 100 (104)
...|+||||++++|.+||+++||+|+++||||||.+. +.|++|.+|||+|+++.+|.
T Consensus 4 ~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~ 61 (337)
T KOG0712|consen 4 TKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKRE 61 (337)
T ss_pred cccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHH
Confidence 3568999999999999999999999999999998665 89999999999999998874
No 21
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=6.1e-15 Score=114.59 Aligned_cols=60 Identities=30% Similarity=0.443 Sum_probs=54.4
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
|+..++|+||||++++|.+||+++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~ 64 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRG 64 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence 455789999999999999999999999999999999853 378999999999999998875
No 22
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=6.2e-15 Score=114.61 Aligned_cols=57 Identities=23% Similarity=0.471 Sum_probs=52.2
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
.++|+||||++++|.+||+++||+|++++|||++++ .+.|++|++||++|+++.+|.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 63 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA 63 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhH
Confidence 578999999999999999999999999999999753 267999999999999998874
No 23
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=7.9e-15 Score=114.49 Aligned_cols=58 Identities=28% Similarity=0.424 Sum_probs=53.2
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549 43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
..++|+||||++++|.+||+++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~ 64 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRA 64 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhh
Confidence 4589999999999999999999999999999999754 368999999999999998875
No 24
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=6.8e-15 Score=114.40 Aligned_cols=60 Identities=25% Similarity=0.437 Sum_probs=53.8
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-SH---YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~~---~~~~~i~~Aye~L~~~~~r~ 100 (104)
|...++|+||||++++|.+||+++||+|++++|||+++ +. +.|.+|++||++|+++.+|.
T Consensus 1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~ 64 (371)
T PRK10767 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64 (371)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhh
Confidence 44568999999999999999999999999999999975 32 68999999999999998875
No 25
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=7.3e-15 Score=114.49 Aligned_cols=60 Identities=23% Similarity=0.407 Sum_probs=53.9
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
|+..++|+||||++++|.++|+++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 64 (373)
T PRK14301 1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA 64 (373)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence 344689999999999999999999999999999999753 258999999999999999885
No 26
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=7.8e-15 Score=114.41 Aligned_cols=60 Identities=25% Similarity=0.393 Sum_probs=54.2
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG---SHYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Aye~L~~~~~r~ 100 (104)
|...++|++|||++++|.+||+++||+|++++|||++. ..+.|++|++||++|+++.+|.
T Consensus 2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~ 64 (378)
T PRK14283 2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQ 64 (378)
T ss_pred CCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHH
Confidence 34568999999999999999999999999999999974 4578999999999999998874
No 27
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=7.8e-15 Score=114.39 Aligned_cols=60 Identities=27% Similarity=0.430 Sum_probs=54.1
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
|...++|+||||++++|.+||+++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 63 (376)
T PRK14280 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRA 63 (376)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHH
Confidence 344689999999999999999999999999999999743 478999999999999998875
No 28
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=1e-14 Score=113.86 Aligned_cols=59 Identities=20% Similarity=0.416 Sum_probs=53.5
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549 42 TRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
...++|++|||++++|.++|+++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 2 ~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 64 (380)
T PRK14297 2 ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA 64 (380)
T ss_pred CCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhC
Confidence 34689999999999999999999999999999999753 368999999999999999886
No 29
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=8.8e-15 Score=114.21 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=52.7
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhcchhccc
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH---YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~---~~~~~i~~Aye~L~~~~~r~ 100 (104)
.++|+||||++++|.+||+++||+|++++|||++++. +.|++|++||++|+++.+|+
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 62 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRR 62 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhh
Confidence 4789999999999999999999999999999998764 57999999999999998875
No 30
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=1.3e-14 Score=113.64 Aligned_cols=58 Identities=24% Similarity=0.384 Sum_probs=52.7
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549 43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
..++|+||||++++|.+||+++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 69 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHH
Confidence 3689999999999999999999999999999999742 378999999999999998774
No 31
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=1.2e-14 Score=113.68 Aligned_cols=57 Identities=32% Similarity=0.427 Sum_probs=52.4
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
.++|+||||++++|.+||+++||+|++++|||++.+ .+.|++|++||++|+++.+|.
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 65 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 65 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 589999999999999999999999999999999752 368999999999999998874
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.51 E-value=1.9e-14 Score=109.45 Aligned_cols=60 Identities=22% Similarity=0.365 Sum_probs=54.0
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG---SHYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Aye~L~~~~~r~ 100 (104)
|+..++|++|||++++|.+||+++||+|++++|||++. ..+.|++|++||++|+++.+|+
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~ 63 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA 63 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHH
Confidence 44568999999999999999999999999999999974 4478999999999999998774
No 33
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=2.2e-14 Score=112.54 Aligned_cols=57 Identities=26% Similarity=0.432 Sum_probs=52.4
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
.++|+||||++++|.++|+++||+|++++|||++++ .+.|++|++||++|+++.+|+
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 63 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRR 63 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhh
Confidence 488999999999999999999999999999999853 378999999999999998775
No 34
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=3.6e-14 Score=110.87 Aligned_cols=57 Identities=30% Similarity=0.408 Sum_probs=52.6
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
.++|+||||++++|.++|+++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~ 62 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRK 62 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHH
Confidence 478999999999999999999999999999999853 478999999999999998875
No 35
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=5.9e-14 Score=111.25 Aligned_cols=59 Identities=20% Similarity=0.341 Sum_probs=54.1
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhcchhccc
Q 048549 42 TRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH-----YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-----~~~~~i~~Aye~L~~~~~r~ 100 (104)
....+|++|||+.+++.++|+++||+|++++|||++++. +.|+.|+.||++|++|+.|+
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~ 69 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERA 69 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhh
Confidence 456899999999999999999999999999999998764 68999999999999998874
No 36
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.48 E-value=6.2e-14 Score=109.21 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=52.2
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
.++|+||||++++|.+||+++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~ 62 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRA 62 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhh
Confidence 588999999999999999999999999999999743 468999999999999998775
No 37
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.2e-13 Score=103.48 Aligned_cols=59 Identities=29% Similarity=0.450 Sum_probs=54.1
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549 42 TRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
...+.|++|||+++++.++|+++||+|++++|||++|+ .++|.+||.||++|+++.+|.
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~ 91 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRN 91 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhh
Confidence 36789999999999999999999999999999999876 378999999999999998873
No 38
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=6.2e-14 Score=109.84 Aligned_cols=56 Identities=27% Similarity=0.428 Sum_probs=51.5
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549 45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
++|+||||++++|.+||+++||+|++++|||++.+ .+.|++|++||++|+++.+|.
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 61 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHH
Confidence 68999999999999999999999999999999853 368999999999999998874
No 39
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=7.5e-14 Score=109.11 Aligned_cols=60 Identities=23% Similarity=0.374 Sum_probs=53.9
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-S---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
|...++|++|||++++|.+||+++||+|++++|||++. + .+.|++|++||++|+++.+|+
T Consensus 2 ~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 65 (386)
T PRK14289 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65 (386)
T ss_pred CccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34468999999999999999999999999999999975 3 368999999999999998875
No 40
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.46 E-value=8.9e-14 Score=107.45 Aligned_cols=56 Identities=29% Similarity=0.407 Sum_probs=51.4
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549 45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
++|+||||++++|.++|+++||+|++++|||++.+ .+.|++|++||++|+++.+|.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 59 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRA 59 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHH
Confidence 47999999999999999999999999999999853 478999999999999998875
No 41
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.46 E-value=8.6e-14 Score=108.15 Aligned_cols=57 Identities=26% Similarity=0.359 Sum_probs=52.1
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-H----HHHHHHHHHHHHhcchhccc
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-H----YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-~----~~~~~i~~Aye~L~~~~~r~ 100 (104)
.++|+||||++++|.+||+++||+|++++|||++.+ . +.|++|++||++|+++.+|+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~ 64 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR 64 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhh
Confidence 478999999999999999999999999999999753 2 78999999999999998874
No 42
>PHA02624 large T antigen; Provisional
Probab=99.46 E-value=1.5e-13 Score=112.56 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=56.4
Q ss_pred HHHHHHHhCCCCCC--ChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhcccCC
Q 048549 43 RREAAMILGVREST--PTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSNS 102 (104)
Q Consensus 43 ~~ea~~iLgl~~~~--s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~r~~~ 102 (104)
.+++|++|||++++ +.++|+++||++++++|||+||+.+.|++|++||++|.++.++...
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 47899999999999 9999999999999999999999999999999999999998877653
No 43
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.45 E-value=2.2e-13 Score=102.27 Aligned_cols=58 Identities=29% Similarity=0.417 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC---C-C-------HHHHHHHHHHHHHhcch
Q 048549 39 PVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAG---G-S-------HYLASKINEAKAIMLRR 96 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~---g-~-------~~~~~~i~~Aye~L~~~ 96 (104)
..++..++|++|||++++|.++||++||+|++++|||+. | + .+.+++|++||++|++.
T Consensus 195 ~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 195 RGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CCCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 368899999999999999999999999999999999994 2 2 25899999999999874
No 44
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=1.6e-13 Score=106.74 Aligned_cols=56 Identities=27% Similarity=0.430 Sum_probs=51.9
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549 45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
++|+||||++++|.++|+++||+|++++|||++++ .+.|.+|++||++|+++.+|+
T Consensus 3 d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~ 61 (371)
T PRK14292 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRA 61 (371)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhh
Confidence 68999999999999999999999999999999864 478999999999999998874
No 45
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.3e-13 Score=100.50 Aligned_cols=63 Identities=22% Similarity=0.366 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHhcchhcccC
Q 048549 39 PVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDA----GGSHYLASKINEAKAIMLRRTKRSN 101 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk----~g~~~~~~~i~~Aye~L~~~~~r~~ 101 (104)
..+..-++++||||++++|..|||++||+|.+++|||| +++.+.+..|+.||+.|.++..|.+
T Consensus 94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN 160 (230)
T KOG0721|consen 94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSREN 160 (230)
T ss_pred HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHH
Confidence 33444577999999999999999999999999999999 5777889999999999999887754
No 46
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.7e-13 Score=103.95 Aligned_cols=62 Identities=23% Similarity=0.392 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcchhccc
Q 048549 39 PVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG---SHYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Aye~L~~~~~r~ 100 (104)
..++.+++|+||||+.+++..||+.+|++|++++|||.+- ....|++|.+|||+|+++.+|.
T Consensus 38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~ 102 (288)
T KOG0715|consen 38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQ 102 (288)
T ss_pred ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHH
Confidence 3345558999999999999999999999999999999863 4578999999999999998875
No 47
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.41 E-value=2.9e-13 Score=105.47 Aligned_cols=57 Identities=25% Similarity=0.344 Sum_probs=52.3
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
.++|+||||++++|.++|+++||+|++++|||++.+ .+.|.+|++||++|+++.+|+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~ 62 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHH
Confidence 478999999999999999999999999999999743 478999999999999998874
No 48
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.8e-13 Score=105.93 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=54.7
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH-------YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-------~~~~~i~~Aye~L~~~~~r~ 100 (104)
....|.|.+|||++++|.+||+++||++.+.+||||.-|+ +.|++|.+|||+|+|+++|+
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRa 72 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRA 72 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 3446999999999999999999999999999999998665 57999999999999999985
No 49
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=8.9e-13 Score=100.32 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=53.3
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHHhcchhccc
Q 048549 43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-SH---YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~~---~~~~~i~~Aye~L~~~~~r~ 100 (104)
..|+|+||||+++++..+|+++||..++++|||||. |+ +.|+.|.+||++|.++..|.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~ 65 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRA 65 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 468999999999999999999999999999999984 44 68999999999999998875
No 50
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.34 E-value=1.4e-12 Score=110.79 Aligned_cols=63 Identities=21% Similarity=0.131 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549 38 QPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
...+...++|+||||++++|..+|+++||+|++++|||++.+ ...|++|++||++|+++.+|+
T Consensus 567 t~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk 632 (1136)
T PTZ00341 567 TIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKK 632 (1136)
T ss_pred cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHH
Confidence 334455799999999999999999999999999999999754 367999999999999999886
No 51
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=3e-12 Score=89.50 Aligned_cols=59 Identities=27% Similarity=0.354 Sum_probs=53.3
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-CH----HHHHHHHHHHHHhcchhccc
Q 048549 42 TRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-SH----YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~~----~~~~~i~~Aye~L~~~~~r~ 100 (104)
...+.|+||||+++++..||+++||++++++|||++. +. +.|..|++||++|+++.+|.
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~ 67 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA 67 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHH
Confidence 3468899999999999999999999999999999975 33 78999999999999998875
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.27 E-value=9.8e-12 Score=87.71 Aligned_cols=56 Identities=21% Similarity=0.295 Sum_probs=49.2
Q ss_pred HHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcchhccc
Q 048549 45 EAAMILGVRES--TPTEKVKESHRRVMVANHPDAGGSH-------YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 45 ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g~~-------~~~~~i~~Aye~L~~~~~r~ 100 (104)
++|++|||++. ++..+|+++|++|.+++|||+..+. +.+..||+||++|++|.+|+
T Consensus 3 ~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra 67 (166)
T PRK01356 3 NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRA 67 (166)
T ss_pred CHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 57999999997 7899999999999999999997543 23679999999999998875
No 53
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.27 E-value=9.2e-12 Score=88.17 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=49.1
Q ss_pred HHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcchhcccC
Q 048549 45 EAAMILGVRES--TPTEKVKESHRRVMVANHPDAGGS---------HYLASKINEAKAIMLRRTKRSN 101 (104)
Q Consensus 45 ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g~---------~~~~~~i~~Aye~L~~~~~r~~ 101 (104)
++|++|||++. ++..+|+++||+|++++|||+..+ .+.+..||+||++|+++.+|+.
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~ 69 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAE 69 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHH
Confidence 57999999996 688999999999999999999532 2367889999999999988863
No 54
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.25 E-value=1.1e-11 Score=103.57 Aligned_cols=57 Identities=25% Similarity=0.464 Sum_probs=52.1
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhcchhccc
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH---YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~---~~~~~i~~Aye~L~~~~~r~ 100 (104)
.++|+||||+++++.++|+++||+|++++|||++++. ..|++|++||++|+++.+|+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa 61 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRA 61 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHH
Confidence 4789999999999999999999999999999998654 46899999999999998876
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.23 E-value=1.6e-11 Score=87.14 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=51.3
Q ss_pred CCHHHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRES--TPTEKVKESHRRVMVANHPDAGGS---------HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g~---------~~~~~~i~~Aye~L~~~~~r~ 100 (104)
|....++++||+++. .+..+|+++||+|.+++|||+..+ .+.+..||+||++|+++.+|+
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra 71 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRA 71 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence 344578999999998 688999999999999999999532 245789999999999998886
No 56
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.8e-11 Score=102.01 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhhhcCCCCCCCCHHHHHHHhCCCCC----CChHHHHHHHHHHHHHhCCCCCCC-HHHH
Q 048549 9 AGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRES----TPTEKVKESHRRVMVANHPDAGGS-HYLA 83 (104)
Q Consensus 9 ~~ra~~~a~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~----~s~~eIk~~yr~l~~~~HPDk~g~-~~~~ 83 (104)
+.|-.+.+|+.....+ ...|+.++|++||+++-+ ..+++|+++|++|+.+||||||.. -++|
T Consensus 1259 fL~~~L~~W~~ElekK-------------P~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemF 1325 (2235)
T KOG1789|consen 1259 FLRCCLATWYNELEKK-------------PATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMF 1325 (2235)
T ss_pred HHHHHHHHHHHHHhcC-------------CCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 4567777887766666 567999999999999875 456899999999999999999965 4899
Q ss_pred HHHHHHHHHhc-chhcccCCC
Q 048549 84 SKINEAKAIML-RRTKRSNSA 103 (104)
Q Consensus 84 ~~i~~Aye~L~-~~~~r~~~~ 103 (104)
.+||.|||.|+ +..+..++|
T Consensus 1326 e~VnKAYE~L~~~ta~~~~GP 1346 (2235)
T KOG1789|consen 1326 ERVNKAYELLSSETANNSGGP 1346 (2235)
T ss_pred HHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999 444444444
No 57
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.5e-11 Score=90.90 Aligned_cols=57 Identities=18% Similarity=0.357 Sum_probs=52.1
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHHhcchhccc
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGG------SHYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g------~~~~~~~i~~Aye~L~~~~~r~ 100 (104)
.+.|+||||..+++..+|+++|++|++++|||++. ..+.|+.|+.||++|.+.++|+
T Consensus 14 ~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~ 76 (264)
T KOG0719|consen 14 KDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRA 76 (264)
T ss_pred cCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 38899999999999999999999999999999973 3478999999999999998875
No 58
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.20 E-value=3.2e-11 Score=85.80 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=49.4
Q ss_pred HHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCCC--H-------HHHHHHHHHHHHhcchhccc
Q 048549 44 REAAMILGVRES--TPTEKVKESHRRVMVANHPDAGGS--H-------YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g~--~-------~~~~~i~~Aye~L~~~~~r~ 100 (104)
.++|++|||++. ++..+|+++|++|.+++|||+..+ . +.+..||+||++|+++.+|+
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra 73 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRA 73 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHH
Confidence 589999999996 689999999999999999999632 1 33578999999999998875
No 59
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.8e-10 Score=86.36 Aligned_cols=59 Identities=22% Similarity=0.332 Sum_probs=53.0
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhcccC
Q 048549 43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRSN 101 (104)
Q Consensus 43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~~ 101 (104)
.++.|++|||+.+++..||.++||.|++++|||++.+ ..+|..|..||++|.+...|++
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ 93 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQ 93 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHh
Confidence 5789999999999999999999999999999999744 4689999999999999876653
No 60
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.3e-10 Score=90.09 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=53.0
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549 43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
..++|.+|||+.++|.++||+.||+++...|||||-. .|.|+.|..|||+|.+..+|.
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~ 294 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRK 294 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhh
Confidence 3579999999999999999999999999999999854 488999999999999988875
No 61
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.99 E-value=5.8e-10 Score=87.16 Aligned_cols=59 Identities=24% Similarity=0.347 Sum_probs=53.8
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCHH-------HHHHHHHHHHHhcchhcccC
Q 048549 43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSHY-------LASKINEAKAIMLRRTKRSN 101 (104)
Q Consensus 43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~-------~~~~i~~Aye~L~~~~~r~~ 101 (104)
..++|.||||.+++++.||.++||+|+.++|||..-+.+ .|.-|..|+|+|+++.+|+.
T Consensus 393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrq 458 (504)
T KOG0624|consen 393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQ 458 (504)
T ss_pred cchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhh
Confidence 468999999999999999999999999999999976654 58889999999999999875
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.95 E-value=1.3e-09 Score=77.49 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=49.2
Q ss_pred HHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCC--C-------HHHHHHHHHHHHHhcchhccc
Q 048549 45 EAAMILGVRES--TPTEKVKESHRRVMVANHPDAGG--S-------HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 45 ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g--~-------~~~~~~i~~Aye~L~~~~~r~ 100 (104)
+++++||+++. .+...++++|+.|.+++|||+.. + .+....||+||.+|++|.+|+
T Consensus 3 nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA 69 (173)
T PRK01773 3 NPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRA 69 (173)
T ss_pred ChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHH
Confidence 57899999997 89999999999999999999942 2 245788999999999999886
No 63
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.83 E-value=8.7e-09 Score=82.42 Aligned_cols=57 Identities=23% Similarity=0.377 Sum_probs=49.9
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcchhcccC
Q 048549 45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---------HYLASKINEAKAIMLRRTKRSN 101 (104)
Q Consensus 45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---------~~~~~~i~~Aye~L~~~~~r~~ 101 (104)
++|+||||+.+.|.++||++||+|..++||||-.. .+...+|+.||+.|.+...|.+
T Consensus 99 DPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~ren 164 (610)
T COG5407 99 DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRREN 164 (610)
T ss_pred ChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34999999999999999999999999999999543 2567889999999999877754
No 64
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.8e-09 Score=83.09 Aligned_cols=59 Identities=27% Similarity=0.485 Sum_probs=53.0
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC-CCH----HHHHHHHHHHHHhcchhcccC
Q 048549 43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAG-GSH----YLASKINEAKAIMLRRTKRSN 101 (104)
Q Consensus 43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~-g~~----~~~~~i~~Aye~L~~~~~r~~ 101 (104)
..++|.|||+..+++.+||+++||++++.+|||++ |+. -+|++|-+||.+|.++.+|+.
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 36899999999999999999999999999999997 441 369999999999999988864
No 65
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.79 E-value=1e-08 Score=71.72 Aligned_cols=45 Identities=18% Similarity=0.151 Sum_probs=38.7
Q ss_pred CChHHHHHHHHHHHHHhCCCCCC--C-------HHHHHHHHHHHHHhcchhccc
Q 048549 56 TPTEKVKESHRRVMVANHPDAGG--S-------HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 56 ~s~~eIk~~yr~l~~~~HPDk~g--~-------~~~~~~i~~Aye~L~~~~~r~ 100 (104)
.+..+|+++|++|++++|||+.. + .+.+..||+||++|+++.+|+
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra 56 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRA 56 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhH
Confidence 47799999999999999999842 1 256889999999999998886
No 66
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=5.2e-09 Score=76.38 Aligned_cols=58 Identities=28% Similarity=0.387 Sum_probs=50.7
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhcchhcccC
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH-----YLASKINEAKAIMLRRTKRSN 101 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-----~~~~~i~~Aye~L~~~~~r~~ 101 (104)
.++|.||+|..+++.++|+++|+++++++|||++.+. ..|.++.+||++|+++.+|..
T Consensus 3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~ 65 (306)
T KOG0714|consen 3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKI 65 (306)
T ss_pred ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhh
Confidence 5789999999999989999999999999999996444 347889999999999988763
No 67
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.8e-08 Score=73.44 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=48.6
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhcchhc
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH-----YLASKINEAKAIMLRRTK 98 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-----~~~~~i~~Aye~L~~~~~ 98 (104)
-.+|++|.|+|.++.++|+++||+|....|||+|.+. -.|--|..||..|.++..
T Consensus 53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~ 112 (250)
T KOG1150|consen 53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKI 112 (250)
T ss_pred cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHH
Confidence 3789999999999999999999999999999999765 346678999999988763
No 68
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.5e-07 Score=70.15 Aligned_cols=53 Identities=28% Similarity=0.397 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHH-Hhcc
Q 048549 43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAG---GSHYLASKINEAKA-IMLR 95 (104)
Q Consensus 43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~---g~~~~~~~i~~Aye-~L~~ 95 (104)
..|.+.||||+++++.++++.+|.+|++++|||.| .|.+.|.+|.+||. +|..
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999997 46789999999999 5543
No 69
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=2e-05 Score=60.05 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=51.0
Q ss_pred HHHHHHhCCCCC---CChHHHHHHHHHHHHHhCCCCC------CCHHHHHHHHHHHHHhcchhcccC
Q 048549 44 REAAMILGVRES---TPTEKVKESHRRVMVANHPDAG------GSHYLASKINEAKAIMLRRTKRSN 101 (104)
Q Consensus 44 ~ea~~iLgl~~~---~s~~eIk~~yr~l~~~~HPDk~------g~~~~~~~i~~Aye~L~~~~~r~~ 101 (104)
.+.|.+|||+.- +++..|.+++++.+.+||||+. |..+.|.-|..||++|.++.+|..
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~q 109 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQ 109 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhh
Confidence 688999999874 7889999999999999999983 456889999999999999988764
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00023 Score=50.34 Aligned_cols=50 Identities=26% Similarity=0.419 Sum_probs=42.0
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCC---CCCH--------HHHHHHHHHHHHh
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDA---GGSH--------YLASKINEAKAIM 93 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk---~g~~--------~~~~~i~~Aye~L 93 (104)
.+++.+||++...+..+|+++|+.++..+|||+ -|.+ +.++++++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999998 2433 4566677777754
No 71
>PF13446 RPT: A repeated domain in UCH-protein
Probab=97.22 E-value=0.002 Score=38.06 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=39.0
Q ss_pred CCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q 048549 40 VMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLR 95 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~ 95 (104)
.|+.++||++||++++.+.+.|...|+.... .++.....+.+|-.+|-+
T Consensus 1 ~~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-------~~P~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 1 YMDVEEAYEILGIDEDTDDDFIISAFQSKVN-------DDPSQKDTLREALRVIAE 49 (62)
T ss_pred CCCHHHHHHHhCcCCCCCHHHHHHHHHHHHH-------cChHhHHHHHHHHHHHHH
Confidence 3899999999999999999999999999888 334455556666666654
No 72
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0013 Score=46.36 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=49.1
Q ss_pred CHHHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCC-------C--HHHHHHHHHHHHHhcchhcccC
Q 048549 42 TRREAAMILGVRES--TPTEKVKESHRRVMVANHPDAGG-------S--HYLASKINEAKAIMLRRTKRSN 101 (104)
Q Consensus 42 ~~~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g-------~--~~~~~~i~~Aye~L~~~~~r~~ 101 (104)
+..+.+.+||.... .+++.+...|-...++.|||+-+ + .+...+||+||..|.++..|+.
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~ 76 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARAR 76 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34688999988775 68888888999999999999832 2 2567889999999999988863
No 73
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.49 E-value=0.0034 Score=50.66 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.2
Q ss_pred CCCChHHHHHHHHHHHHHhCCCC
Q 048549 54 ESTPTEKVKESHRRVMVANHPDA 76 (104)
Q Consensus 54 ~~~s~~eIk~~yr~l~~~~HPDk 76 (104)
+-++...||++|||-.+..||||
T Consensus 398 DLVtp~~VKKaYrKA~L~VHPDK 420 (453)
T KOG0431|consen 398 DLVTPAQVKKAYRKAVLCVHPDK 420 (453)
T ss_pred hccCHHHHHHHHHhhhheeCccc
Confidence 33799999999999999999999
No 74
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=95.55 E-value=0.023 Score=41.10 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=36.3
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhc
Q 048549 53 RESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTK 98 (104)
Q Consensus 53 ~~~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~ 98 (104)
++++|.|||+++++++..+| +||.....+|..|||.|+-.+-
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~ILM~rL 42 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAILMERL 42 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999 5888888999999998875543
No 75
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.032 Score=39.38 Aligned_cols=44 Identities=23% Similarity=0.242 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHHHhcchhccc
Q 048549 57 PTEKVKESHRRVMVANHPDAGGSH---------YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 57 s~~eIk~~yr~l~~~~HPDk~g~~---------~~~~~i~~Aye~L~~~~~r~ 100 (104)
..+.+...|+.+.+.+|||+.++. +.+..+|.||..|+++..|+
T Consensus 16 ~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra 68 (174)
T COG1076 16 DLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRA 68 (174)
T ss_pred HHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 557788999999999999996532 35677999999999987764
No 76
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=87.70 E-value=0.8 Score=30.37 Aligned_cols=42 Identities=21% Similarity=0.276 Sum_probs=28.7
Q ss_pred CCChHHHHHHHHHHHHHhCCCCCCCH--------HHHHHHHHHHHHhcch
Q 048549 55 STPTEKVKESHRRVMVANHPDAGGSH--------YLASKINEAKAIMLRR 96 (104)
Q Consensus 55 ~~s~~eIk~~yr~l~~~~HPDk~g~~--------~~~~~i~~Aye~L~~~ 96 (104)
..+..+++.+-|.+.++.|||.-++. +-++.|+.=-+.|...
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 35678999999999999999975433 2344455545555443
No 77
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=61.88 E-value=12 Score=28.49 Aligned_cols=42 Identities=19% Similarity=0.297 Sum_probs=34.3
Q ss_pred CChHHHHHHHHHHHHHhCCCCCC--------CHHHHHHHHHHHHHhcchh
Q 048549 56 TPTEKVKESHRRVMVANHPDAGG--------SHYLASKINEAKAIMLRRT 97 (104)
Q Consensus 56 ~s~~eIk~~yr~l~~~~HPDk~g--------~~~~~~~i~~Aye~L~~~~ 97 (104)
.+..++...|+......||++-. ..+.+.+|..||+++.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~ 53 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDE 53 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccc
Confidence 46788999999999999999752 3356899999999999743
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=58.98 E-value=42 Score=21.00 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=23.9
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHHh----CCCC
Q 048549 47 AMILGVRESTPTEKVKESHRRVMVAN----HPDA 76 (104)
Q Consensus 47 ~~iLgl~~~~s~~eIk~~yr~l~~~~----HPDk 76 (104)
.+++|+++.++..||+.+-+..+++. ||..
T Consensus 6 k~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~ 39 (88)
T COG5552 6 KELFNFDPPATPVEVRDAALQFVRKLSGTTHPSA 39 (88)
T ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcch
Confidence 46899999999999999877666665 5554
No 79
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=55.02 E-value=15 Score=28.40 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHh-----CCCC-CCChHHHHHHHHHHHHHhCCCCC
Q 048549 38 QPVMTRREAAMIL-----GVRE-STPTEKVKESHRRVMVANHPDAG 77 (104)
Q Consensus 38 ~~~m~~~ea~~iL-----gl~~-~~s~~eIk~~yr~l~~~~HPDk~ 77 (104)
......++|.++| |-.+ +.+.+++-++.+..--..|||-|
T Consensus 24 ~S~~~l~~a~~ll~~~~~g~~~~~~~~~~lw~Ak~l~~Sa~HPDTg 69 (308)
T PF03820_consen 24 ASEAELEEAKELLEDYRAGKVPPGLTDDELWKAKKLYDSAFHPDTG 69 (308)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhhcccCCCCC
Confidence 3444567888888 3322 25999999999999999999974
No 80
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=52.82 E-value=20 Score=24.45 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=11.5
Q ss_pred CCHHHHHHHhCCCCC
Q 048549 41 MTRREAAMILGVRES 55 (104)
Q Consensus 41 m~~~ea~~iLgl~~~ 55 (104)
.+..+|..+||++..
T Consensus 90 L~~tqal~Ll~lpee 104 (130)
T PF11300_consen 90 LSYTQALILLGLPEE 104 (130)
T ss_pred hhHHHHHHHHcCCch
Confidence 456789999999764
No 81
>KOG3767 consensus Sideroflexin [General function prediction only]
Probab=48.84 E-value=21 Score=28.02 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHhC------CCCCCChHHHHHHHHHHHHHhCCCCC
Q 048549 38 QPVMTRREAAMILG------VRESTPTEKVKESHRRVMVANHPDAG 77 (104)
Q Consensus 38 ~~~m~~~ea~~iLg------l~~~~s~~eIk~~yr~l~~~~HPDk~ 77 (104)
...-+.+++++|+. ++++.+.+++-++.+..--.+|||-|
T Consensus 42 ~s~~~le~ar~iv~~yk~G~~~p~~t~~~lW~Akkl~dS~~HPDTg 87 (328)
T KOG3767|consen 42 VSEKKLEEARQIVEDYKAGKVPPGLTDDELWKAKKLYDSTFHPDTG 87 (328)
T ss_pred hhHHHHHHHHHHHHhhccCCcCCCCcHHHHHHHHHHHhcccCCCCC
Confidence 33445678888874 34457899999999999999999975
No 82
>PF12728 HTH_17: Helix-turn-helix domain
Probab=47.75 E-value=12 Score=20.36 Aligned_cols=15 Identities=47% Similarity=0.696 Sum_probs=12.8
Q ss_pred CCHHHHHHHhCCCCC
Q 048549 41 MTRREAAMILGVRES 55 (104)
Q Consensus 41 m~~~ea~~iLgl~~~ 55 (104)
+|.+|+.++||++..
T Consensus 2 lt~~e~a~~l~is~~ 16 (51)
T PF12728_consen 2 LTVKEAAELLGISRS 16 (51)
T ss_pred CCHHHHHHHHCcCHH
Confidence 688999999999763
No 83
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=45.18 E-value=41 Score=25.88 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhC
Q 048549 38 QPVMTRREAAMILGVRESTPTEKVKESHRRVMVANH 73 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~H 73 (104)
+...+.+|...+.|+++..|..||...|.-|....|
T Consensus 22 ~~~lt~~e~~~~~~ln~~~~l~eV~~iylpL~~l~~ 57 (283)
T COG1072 22 PLTLTEEELKRLRGLNEPISLDEVEDIYLPLSRLLQ 57 (283)
T ss_pred ccccCHHHHHHhccCCCCCCHHHHHHHHHHHHHHHH
Confidence 455688999999999999999999999999988764
No 84
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=44.80 E-value=22 Score=14.71 Aligned_cols=12 Identities=17% Similarity=0.141 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhc
Q 048549 83 ASKINEAKAIML 94 (104)
Q Consensus 83 ~~~i~~Aye~L~ 94 (104)
+..|..||+.|+
T Consensus 3 ~~~V~~aY~~l~ 14 (14)
T PF07709_consen 3 FEKVKNAYEQLS 14 (14)
T ss_pred HHHHHHHHHhcC
Confidence 556777777663
No 85
>smart00427 H2B Histone H2B.
Probab=44.00 E-value=33 Score=21.95 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=11.9
Q ss_pred HHHHHHhCCCCCCCH
Q 048549 66 RRVMVANHPDAGGSH 80 (104)
Q Consensus 66 r~l~~~~HPDk~g~~ 80 (104)
.+..++.|||.+-+.
T Consensus 8 ~kvLKqVhpd~giS~ 22 (89)
T smart00427 8 YKVLKQVHPDTGISS 22 (89)
T ss_pred HHHHHHhCCCccccH
Confidence 567899999997554
No 86
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=43.38 E-value=16 Score=19.01 Aligned_cols=14 Identities=50% Similarity=0.582 Sum_probs=12.4
Q ss_pred CCHHHHHHHhCCCC
Q 048549 41 MTRREAAMILGVRE 54 (104)
Q Consensus 41 m~~~ea~~iLgl~~ 54 (104)
|+.+|+.+.||+++
T Consensus 2 lt~~e~a~~lgis~ 15 (49)
T TIGR01764 2 LTVEEAAEYLGVSK 15 (49)
T ss_pred CCHHHHHHHHCCCH
Confidence 68899999999976
No 87
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=41.12 E-value=26 Score=20.12 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHhCCCCCCChHHHHHHHHHHH
Q 048549 38 QPVMTRREAAMILGVRESTPTEKVKESHRRVM 69 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~ 69 (104)
+...+..|--+.|||++..=.+-|+++-++++
T Consensus 21 PR~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 21 PRRITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CCcCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 34568899999999999888888888888875
No 88
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=40.03 E-value=32 Score=24.13 Aligned_cols=12 Identities=17% Similarity=-0.180 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHH
Q 048549 81 YLASKINEAKAI 92 (104)
Q Consensus 81 ~~~~~i~~Aye~ 92 (104)
+.+..+|.+|+-
T Consensus 99 ~~l~~lN~~Y~~ 110 (166)
T PRK13798 99 AALAAGNRAYEE 110 (166)
T ss_pred HHHHHHHHHHHH
Confidence 457778888873
No 89
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=39.79 E-value=9.6 Score=22.38 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=20.1
Q ss_pred HHHHHHhCCCCCCChHHH-HHHHHHHHHHhCCCC
Q 048549 44 REAAMILGVRESTPTEKV-KESHRRVMVANHPDA 76 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eI-k~~yr~l~~~~HPDk 76 (104)
++.+++||+++ +++ ......+....|||-
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 46788999866 666 556777888899974
No 90
>PRK05439 pantothenate kinase; Provisional
Probab=39.54 E-value=1.1e+02 Score=23.75 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=30.7
Q ss_pred CCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHh
Q 048549 37 FQPVMTRREAAMILGVRESTPTEKVKESHRRVMVAN 72 (104)
Q Consensus 37 ~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~ 72 (104)
...+++.+|...+-|++...|.+||..-|.=|++..
T Consensus 25 ~~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli 60 (311)
T PRK05439 25 TPLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLL 60 (311)
T ss_pred CCCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999997666544
No 91
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=39.46 E-value=44 Score=20.16 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=16.1
Q ss_pred CCCHHHHHHHhCCCCCCChHHHHH
Q 048549 40 VMTRREAAMILGVRESTPTEKVKE 63 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~~s~~eIk~ 63 (104)
.+|.+|-+++|||+.+.+.++-.+
T Consensus 45 gks~eeir~~fgi~~d~t~eee~~ 68 (78)
T PF01466_consen 45 GKSPEEIRKYFGIENDLTPEEEEE 68 (78)
T ss_dssp TS-HHHHHHHHT---TSSHHHHHH
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHH
Confidence 478999999999999988776544
No 92
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=38.77 E-value=1.3e+02 Score=20.54 Aligned_cols=57 Identities=12% Similarity=0.121 Sum_probs=32.5
Q ss_pred CCCCCCHHHHHHHhCCCCC---------CChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Q 048549 37 FQPVMTRREAAMILGVRES---------TPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIM 93 (104)
Q Consensus 37 ~~~~m~~~ea~~iLgl~~~---------~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L 93 (104)
..+-++..+|..+.|+.+. .|.+.+...-..-++..--+.|.+.+...++..|...|
T Consensus 63 l~~yP~l~~WL~vVgl~~~~i~~i~~~~~tLe~Llemsd~el~~~l~~~g~~~EE~rRL~~Al~~L 128 (129)
T PF13543_consen 63 LNSYPSLRQWLRVVGLRPESIQAILSKVLTLEALLEMSDEELKEILNRCGAREEECRRLCRALSNL 128 (129)
T ss_pred cccCCcHHHHhhhcCCCHHHHHHHHHhhcCHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3445788999999999875 12222222111111111111356778888888887665
No 93
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=37.83 E-value=68 Score=18.72 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhc
Q 048549 63 ESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTK 98 (104)
Q Consensus 63 ~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~ 98 (104)
..++.-++.-||+. +..+....|.+.|..|.+..+
T Consensus 14 ~~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~eK 48 (72)
T cd01388 14 KRHRRKVLQEYPLK-ENRAISKILGDRWKALSNEEK 48 (72)
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 44566677778875 455677778888888876544
No 94
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.27 E-value=46 Score=28.37 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=30.7
Q ss_pred HhCCCCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q 048549 49 ILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLR 95 (104)
Q Consensus 49 iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~ 95 (104)
.|-.+..+.+++|+.++..+.+.|||.+ +...+-+|++.|..
T Consensus 394 ~~~~Ps~~~mEqvk~k~~~m~r~YSP~k-----kl~~Llk~ckLly~ 435 (651)
T KOG2320|consen 394 FLSTPSDVLMEQVKQKFTAMQRRYSPSK-----KLHALLKACKLLYA 435 (651)
T ss_pred eccCCcHHHHHHHHHHHHHHHHhhChHH-----HHHHHHHHHHHHHH
Confidence 4445555788999999999999999976 44555566665543
No 95
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=37.00 E-value=84 Score=20.35 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=29.5
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHHhCCCC---------CCCHHH
Q 048549 47 AMILGVRESTPTEKVKESHRRVMVANHPDA---------GGSHYL 82 (104)
Q Consensus 47 ~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk---------~g~~~~ 82 (104)
...+++.++.+.++++++.++.+....++. |||+..
T Consensus 30 i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n 74 (116)
T TIGR00824 30 VGAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYN 74 (116)
T ss_pred eEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHH
Confidence 556788888999999999999999987654 688854
No 96
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=35.73 E-value=66 Score=20.18 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=24.5
Q ss_pred hCCCCCC-ChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 048549 50 LGVREST-PTEKVKESHRRVMVANHPDAGGSHYLASKINEAK 90 (104)
Q Consensus 50 Lgl~~~~-s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay 90 (104)
-|++|+. .-.++-+.|..++...++ ++.+.+..|...|
T Consensus 50 ~g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y 88 (118)
T PF07739_consen 50 EGVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY 88 (118)
T ss_dssp HT--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 3667763 667788888888887765 6777888777777
No 97
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=35.20 E-value=40 Score=23.20 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCC
Q 048549 38 QPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPD 75 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPD 75 (104)
-..|+.+|--++||++++.-..-+.++-++|-+-..||
T Consensus 144 ~~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~~~~~ 181 (185)
T PRK09649 144 LLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPD 181 (185)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCcc
Confidence 34566667777777766555555555555555544443
No 98
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=33.48 E-value=1.6e+02 Score=20.25 Aligned_cols=63 Identities=13% Similarity=0.343 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhcCCchhh---------------------hhhhcCCCCCCCCHHHHHHHhCCCCC-------CChHHH
Q 048549 10 GKYGITAWQAFKAQTPTARM---------------------RKVFEGSFQPVMTRREAAMILGVRES-------TPTEKV 61 (104)
Q Consensus 10 ~ra~~~a~~~~~~~~~~~~~---------------------~~~~~~~~~~~m~~~ea~~iLgl~~~-------~s~~eI 61 (104)
=+-|..+|+.+.++...... ..+....+.+.+-..+++-=|++.-. .-+..|
T Consensus 7 R~ff~~~w~K~~~~~~L~~lE~~a~~~i~~HPEYh~~l~~~e~~l~~dy~pe~G~tNPFLHlsmHLsI~EQ~sidqP~GI 86 (137)
T PF08897_consen 7 RRFFCDAWRKYRAGEPLTPLEQIAADVIEEHPEYHALLDDPERALARDYSPEQGETNPFLHLSMHLSIQEQLSIDQPPGI 86 (137)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCcchHHHHhCHHHHhhccCCcccCccchhHHHHHHHHHHHHHhccCChHH
Confidence 35788999887777543221 11123345555554444443333321 356779
Q ss_pred HHHHHHHHHHh
Q 048549 62 KESHRRVMVAN 72 (104)
Q Consensus 62 k~~yr~l~~~~ 72 (104)
+.+|.+|..+.
T Consensus 87 r~a~~~L~~r~ 97 (137)
T PF08897_consen 87 RAAYERLAARG 97 (137)
T ss_pred HHHHHHHHHHc
Confidence 99999999873
No 99
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=32.97 E-value=31 Score=26.37 Aligned_cols=14 Identities=36% Similarity=0.342 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhcc
Q 048549 82 LASKINEAKAIMLR 95 (104)
Q Consensus 82 ~~~~i~~Aye~L~~ 95 (104)
.+++||+|+|+|+.
T Consensus 129 RLkKVNEAFE~LKR 142 (284)
T KOG3960|consen 129 RLKKVNEAFETLKR 142 (284)
T ss_pred HHHHHHHHHHHHHh
Confidence 57889999999984
No 100
>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons.
Probab=32.47 E-value=84 Score=18.93 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCC
Q 048549 38 QPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPD 75 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPD 75 (104)
+.+++..+|-+.||++...- .+--..||+...+..|.
T Consensus 11 s~~~s~~~Aa~~lG~~~~~v-~~wv~~fR~wll~LDPS 47 (65)
T PF05344_consen 11 SQQISVAQAADRLGTDPGTV-RRWVRMFRQWLLQLDPS 47 (65)
T ss_pred cccccHHHHHHHHCcCHHHH-HHHHHHHHHHHHHcCCC
Confidence 56789999999999987633 33446799999998765
No 101
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=32.46 E-value=51 Score=22.05 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=15.0
Q ss_pred CCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHh
Q 048549 40 VMTRREAAMILGVRESTPTEKVKESHRRVMVAN 72 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~ 72 (104)
.++.+|--++||++++.-...+.++-++|-...
T Consensus 128 g~s~~eIA~~lgis~~tV~~~l~Rar~~Lr~~l 160 (164)
T PRK12547 128 GFSYEDAAAICGCAVGTIKSRVSRARNRLQELL 160 (164)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444444444444444333
No 102
>COG2879 Uncharacterized small protein [Function unknown]
Probab=30.25 E-value=49 Score=19.92 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=18.1
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC
Q 048549 47 AMILGVRESTPTEKVKESHRRVMVANHPDAGG 78 (104)
Q Consensus 47 ~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g 78 (104)
.-+-||++- ..|-.-+++.|||+..
T Consensus 17 ~lmvGvpdY-------dnYVehmr~~hPd~p~ 41 (65)
T COG2879 17 KLMVGVPDY-------DNYVEHMRKKHPDKPP 41 (65)
T ss_pred HHHcCCCcH-------HHHHHHHHHhCcCCCc
Confidence 344566552 5788889999999964
No 103
>PF05379 Peptidase_C23: Carlavirus endopeptidase ; InterPro: IPR008041 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C23 (clan CA). The type example is Carlavirus (apple stem pitting virus) endopeptidase, this thought to play a role in the post-translational cleavage of the high molecular weight primary translation products of the virus.; GO: 0003968 RNA-directed RNA polymerase activity, 0016817 hydrolase activity, acting on acid anhydrides
Probab=29.65 E-value=58 Score=20.55 Aligned_cols=54 Identities=9% Similarity=0.073 Sum_probs=35.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHhcCCchhhhhhhcCCCCCCCCHHHHHHHhCCCCC
Q 048549 2 AVAAAAYAGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRES 55 (104)
Q Consensus 2 ~~~~~~~~~ra~~~a~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~ 55 (104)
+-|+|..++|-.....+...+..........+.|.--..+..++.+++|+|.-.
T Consensus 7 i~AiA~aL~R~~~dVl~Vl~~~~~~~~~~~l~~G~Gl~l~~le~~f~~F~I~A~ 60 (89)
T PF05379_consen 7 IRAIAEALGRREQDVLAVLSRKCGEELLEELWSGEGLDLEDLEELFELFDICAH 60 (89)
T ss_pred hHHHHHHhCCCHHHHHHHHHhccCHHHHHHHHcCCCcCHHHHHHHHHHcCeEEE
Confidence 456777777777777777666554434445565555555677888899988643
No 104
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=29.40 E-value=84 Score=19.31 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=18.4
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCC
Q 048549 53 RESTPTEKVKESHRRVMVANHPDA 76 (104)
Q Consensus 53 ~~~~s~~eIk~~yr~l~~~~HPDk 76 (104)
..+.+++||-.-|++.+...-|+.
T Consensus 32 ~~~I~PEeIv~iH~~~v~~l~~~~ 55 (77)
T PF08673_consen 32 EKDISPEEIVEIHKSAVQELSPSL 55 (77)
T ss_dssp HTT--HHHHHHHHHHHHHHH-TTS
T ss_pred HcCCCHHHHHHHHHHHHHHHcccc
Confidence 346788999999999999998886
No 105
>PLN00158 histone H2B; Provisional
Probab=29.09 E-value=78 Score=21.23 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=12.4
Q ss_pred HHHHHHHhCCCCCCCH
Q 048549 65 HRRVMVANHPDAGGSH 80 (104)
Q Consensus 65 yr~l~~~~HPDk~g~~ 80 (104)
..+..++.|||.+-+.
T Consensus 33 I~kVLKQVhPd~gIS~ 48 (116)
T PLN00158 33 IYKVLKQVHPDTGISS 48 (116)
T ss_pred HHHHHHHhCCCCCccH
Confidence 4567889999998654
No 106
>PTZ00463 histone H2B; Provisional
Probab=28.98 E-value=79 Score=21.23 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=12.1
Q ss_pred HHHHHHHhCCCCCCCH
Q 048549 65 HRRVMVANHPDAGGSH 80 (104)
Q Consensus 65 yr~l~~~~HPDk~g~~ 80 (104)
..+.+++.|||.+-+.
T Consensus 34 I~KVLKqVhPd~gIS~ 49 (117)
T PTZ00463 34 IFKVLKQVHPDTGISR 49 (117)
T ss_pred HHHHHHhhCCCCCccH
Confidence 3566788999998664
No 107
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=28.95 E-value=64 Score=21.98 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHHH
Q 048549 39 PVMTRREAAMILGVRESTPTEKVKESHRRVM 69 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~ 69 (104)
..++.+|.-++||++.+.-...+.++.+++.
T Consensus 142 ~g~s~~EIA~~lgis~~tVk~~l~rAl~~~~ 172 (178)
T PRK12529 142 DGMKQKDIAQALDIALPTVKKYIHQAYVTCL 172 (178)
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3455555666666655544444444444443
No 108
>PF14019 DUF4235: Protein of unknown function (DUF4235)
Probab=28.64 E-value=60 Score=19.87 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=17.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHh
Q 048549 2 AVAAAAYAGKYGITAWQAFKA 22 (104)
Q Consensus 2 ~~~~~~~~~ra~~~a~~~~~~ 22 (104)
.++++.+++|.|-++|+....
T Consensus 9 ~~~ag~~a~k~~~~~W~~~tg 29 (78)
T PF14019_consen 9 GLAAGFLAGKVFEQVWKKVTG 29 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 467889999999999988654
No 109
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=28.33 E-value=40 Score=17.24 Aligned_cols=14 Identities=50% Similarity=0.722 Sum_probs=11.7
Q ss_pred CCHHHHHHHhCCCC
Q 048549 41 MTRREAAMILGVRE 54 (104)
Q Consensus 41 m~~~ea~~iLgl~~ 54 (104)
|+..|+.+.||+++
T Consensus 1 ~s~~e~a~~lgvs~ 14 (49)
T cd04762 1 LTTKEAAELLGVSP 14 (49)
T ss_pred CCHHHHHHHHCcCH
Confidence 57789999999965
No 110
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=28.07 E-value=70 Score=22.20 Aligned_cols=11 Identities=18% Similarity=-0.176 Sum_probs=7.9
Q ss_pred HHHHHHHHHHH
Q 048549 81 YLASKINEAKA 91 (104)
Q Consensus 81 ~~~~~i~~Aye 91 (104)
+.+.++|.+|+
T Consensus 94 ~~L~~lN~~Y~ 104 (158)
T TIGR03180 94 AALLEGNAAYE 104 (158)
T ss_pred HHHHHHHHHHH
Confidence 35677888886
No 111
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=27.73 E-value=1.3e+02 Score=22.90 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHh
Q 048549 38 QPVMTRREAAMILGVRESTPTEKVKESHRRVMVAN 72 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~ 72 (104)
+.+++.+|...+=|+++..|.+||..-|.=|....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~iy~pl~~~~ 36 (290)
T TIGR00554 2 PMTLSEDEIKRLKGINEDLSLEEVATIYLPLSRLL 36 (290)
T ss_pred CCCCCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999998777654
No 112
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=27.63 E-value=40 Score=16.57 Aligned_cols=17 Identities=35% Similarity=0.636 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHHhCCC
Q 048549 59 EKVKESHRRVMVANHPD 75 (104)
Q Consensus 59 ~eIk~~yr~l~~~~HPD 75 (104)
++.-..++++.-..|||
T Consensus 26 ~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 26 EEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHH----------
T ss_pred HHHHHHHHHHhcccccC
Confidence 56667777787888886
No 113
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=27.01 E-value=62 Score=17.06 Aligned_cols=30 Identities=37% Similarity=0.405 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHh
Q 048549 39 PVMTRREAAMILGVRESTPTEKVKESHRRVMVAN 72 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~ 72 (104)
..++..+..+.||++. ..|+..-+++..+.
T Consensus 14 ~~~s~~eia~~l~~s~----~tv~~~~~~~~~~l 43 (57)
T cd06170 14 EGKTNKEIADILGISE----KTVKTHLRNIMRKL 43 (57)
T ss_pred cCCCHHHHHHHHCCCH----HHHHHHHHHHHHHh
Confidence 4578899999999855 55666655555544
No 114
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=27.00 E-value=1.6e+02 Score=18.30 Aligned_cols=55 Identities=5% Similarity=0.028 Sum_probs=36.0
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHHhCCCCC---CCHHH----HHHHHHHHHHhcchhcccC
Q 048549 47 AMILGVRESTPTEKVKESHRRVMVANHPDAG---GSHYL----ASKINEAKAIMLRRTKRSN 101 (104)
Q Consensus 47 ~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~---g~~~~----~~~i~~Aye~L~~~~~r~~ 101 (104)
..+.|++|.++.+||+.+=...+++..=-.. .+.+. ..+|..+-..|++....+.
T Consensus 6 ~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~~L~~~~ 67 (78)
T PF10041_consen 6 KTLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLDSLPTRA 67 (78)
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence 3567899999999999998888877642221 12233 3456777777776654443
No 115
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=26.28 E-value=1.3e+02 Score=21.73 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHhCC-----CCCCChHHHHHHHHH--HHHHhCCCC
Q 048549 38 QPVMTRREAAMILGV-----RESTPTEKVKESHRR--VMVANHPDA 76 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl-----~~~~s~~eIk~~yr~--l~~~~HPDk 76 (104)
...|+.-|++++|+- +|+.+...|..+|.. .+++.|||+
T Consensus 70 ~~kM~i~ec~ell~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~ 115 (204)
T KOG1573|consen 70 KMKMTIWECCELLNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDE 115 (204)
T ss_pred hhheeHHHHHHHHHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCc
Confidence 466999999999863 345788888888864 578899998
No 116
>PF14893 PNMA: PNMA
Probab=26.21 E-value=63 Score=25.33 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=22.7
Q ss_pred CCCHHHHHHHhCCCCCCChHHHHHHHHH
Q 048549 40 VMTRREAAMILGVRESTPTEKVKESHRR 67 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~ 67 (104)
.++.+.+.-|+||+++++.+||.++-+.
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHH
Confidence 3566788889999999999999886544
No 117
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=25.99 E-value=45 Score=17.49 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=18.7
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCC
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDA 76 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk 76 (104)
|+..|+.++||+++ ..|+ .|.+.-... |.+
T Consensus 1 ~~~~e~a~~~gv~~----~tlr-~~~~~g~l~-~~~ 30 (49)
T cd04761 1 YTIGELAKLTGVSP----STLR-YYERIGLLS-PAR 30 (49)
T ss_pred CcHHHHHHHHCcCH----HHHH-HHHHCCCCC-CCc
Confidence 57789999999965 4554 344433332 554
No 118
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=25.67 E-value=1.5e+02 Score=21.95 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHh
Q 048549 38 QPVMTRREAAMILGVRESTPTEKVKESHRRVMVAN 72 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~ 72 (104)
-..++.+|--++||++.+.-...+.++-++|-...
T Consensus 129 ~~g~s~~EIA~~lg~s~~tVk~~l~RAr~~Lr~~~ 163 (293)
T PRK09636 129 VFGVPFDEIASTLGRSPAACRQLASRARKHVRAAR 163 (293)
T ss_pred HhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC
Confidence 34567778888888887766666666666666543
No 119
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=25.60 E-value=1e+02 Score=21.29 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=7.0
Q ss_pred HHHHHHHHHH
Q 048549 82 LASKINEAKA 91 (104)
Q Consensus 82 ~~~~i~~Aye 91 (104)
.+.++|.+|+
T Consensus 95 ~L~~lN~~Y~ 104 (157)
T TIGR03164 95 RFTRLNNAYR 104 (157)
T ss_pred HHHHHHHHHH
Confidence 4666777776
No 120
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=25.35 E-value=71 Score=16.68 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHh
Q 048549 39 PVMTRREAAMILGVRESTPTEKVKESHRRVMVAN 72 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~ 72 (104)
..++..|..+.||++. ..|+...+++..+.
T Consensus 17 ~g~s~~eia~~l~is~----~tv~~~~~~~~~kl 46 (58)
T smart00421 17 EGLTNKEIAERLGISE----KTVKTHLSNIMRKL 46 (58)
T ss_pred cCCCHHHHHHHHCCCH----HHHHHHHHHHHHHH
Confidence 4478888889999855 55555555554444
No 121
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=25.13 E-value=97 Score=17.40 Aligned_cols=35 Identities=9% Similarity=0.147 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchh
Q 048549 62 KESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRT 97 (104)
Q Consensus 62 k~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~ 97 (104)
...++..++..||+.. ..+....+.+.|.-|.+..
T Consensus 12 ~~~~~~~~k~~~p~~~-~~~i~~~~~~~W~~l~~~e 46 (69)
T PF00505_consen 12 CKEKRAKLKEENPDLS-NKEISKILAQMWKNLSEEE 46 (69)
T ss_dssp HHHHHHHHHHHSTTST-HHHHHHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHHHhcccc-cccchhhHHHHHhcCCHHH
Confidence 4556666777788775 4556666677776666543
No 122
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=24.97 E-value=1.5e+02 Score=17.15 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=21.1
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCC
Q 048549 42 TRREAAMILGVRESTPTEKVKESHRRVMVANHPD 75 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPD 75 (104)
+...|.+.||-.+..|.+++-+.--+.. +.||+
T Consensus 28 d~~kA~~~LgW~p~~~L~~~i~~~w~W~-~~np~ 60 (62)
T PF13950_consen 28 DISKAREELGWKPKYSLEDMIRDAWNWQ-KKNPN 60 (62)
T ss_dssp --HHHHHHC----SSSHHHHHHHHHHHH-HHSTT
T ss_pred CHHHHHHHhCCCcCCCHHHHHHHHHHHH-HHCcC
Confidence 5688999999999999999887777654 45665
No 123
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.04 E-value=1e+02 Score=21.01 Aligned_cols=33 Identities=6% Similarity=0.040 Sum_probs=22.6
Q ss_pred CChHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHH
Q 048549 56 TPTEKVKESHRRVMVANH-PDAGGSHYLASKINEAKA 91 (104)
Q Consensus 56 ~s~~eIk~~yr~l~~~~H-PDk~g~~~~~~~i~~Aye 91 (104)
.-..++.++|+.+++..| |++.. ..++-..||=
T Consensus 48 ~aDa~LN~AY~~ll~~l~~~~~~~---aL~kaQRAWi 81 (127)
T COG3755 48 AADAELNKAYKALLKRLQDSPRTK---ALQKAQRAWI 81 (127)
T ss_pred HHHHHHHHHHHHHHHHhccChHHH---HHHHHHHHHH
Confidence 346789999999999888 55533 3455555553
No 124
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=23.72 E-value=1e+02 Score=17.50 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=17.9
Q ss_pred HHhCCCCCCChHHHHHHHHHHHH
Q 048549 48 MILGVRESTPTEKVKESHRRVMV 70 (104)
Q Consensus 48 ~iLgl~~~~s~~eIk~~yr~l~~ 70 (104)
.+=|+.|..+++|.+++-|.=..
T Consensus 3 ~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 3 RIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred ccccCCCCCCHHHHHHHHHHHHH
Confidence 35588899999999998887443
No 125
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=22.97 E-value=45 Score=20.35 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=19.7
Q ss_pred HhCCCCCCChHHHHHHHHHHHHHhCC
Q 048549 49 ILGVRESTPTEKVKESHRRVMVANHP 74 (104)
Q Consensus 49 iLgl~~~~s~~eIk~~yr~l~~~~HP 74 (104)
|..+..+.+.++||+.|.+++....|
T Consensus 6 i~~Lh~G~~~e~vk~~F~~~~~~Vs~ 31 (71)
T PF04282_consen 6 IKRLHEGEDPEEVKEEFKKLFSDVSA 31 (71)
T ss_pred HHHHhCCCCHHHHHHHHHHHHCCCCH
Confidence 44566677888999999888876655
No 126
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=22.42 E-value=80 Score=20.42 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=28.0
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCC
Q 048549 42 TRREAAMILGVRESTPTEKVKESHRRVMVANHPDA 76 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk 76 (104)
..+|...||+++ ....+.|-.+++++.+..-|-.
T Consensus 18 gaDEil~IL~lp-~s~l~~iP~~~kk~w~dl~~~~ 51 (97)
T PF04512_consen 18 GADEILSILRLP-CSALQSIPRSHKKLWKDLEPCV 51 (97)
T ss_pred cHHHHHHHhCCC-HHHHHHcCHHHHHHHHHhcccC
Confidence 568999999999 6677788888888888888843
No 127
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=22.35 E-value=1.3e+02 Score=21.09 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 048549 56 TPTEKVKESHRRVMVANHPDAGGSHYLASKINEAK 90 (104)
Q Consensus 56 ~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay 90 (104)
.|.++|++-...=+....|.++.|-....+..++.
T Consensus 36 ~tR~dIR~LI~~G~I~~kp~kg~Sr~R~r~~~~~r 70 (150)
T PRK08570 36 ITREDIRELIKEGVIKAKPKKGISRGRARERHEKR 70 (150)
T ss_pred hhHHHHHHHHHCCCeeecCccCCChHHHHHHHHHH
Confidence 46677777776666677888887777666655554
No 128
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=22.26 E-value=49 Score=17.94 Aligned_cols=28 Identities=39% Similarity=0.494 Sum_probs=16.7
Q ss_pred CCCCCCHHHHHHHhCCCCCCChHHHHHHHHHH
Q 048549 37 FQPVMTRREAAMILGVRESTPTEKVKESHRRV 68 (104)
Q Consensus 37 ~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l 68 (104)
+-..|+..|.-+.||+++ ..|+..+.+-
T Consensus 23 ~~~g~s~~eIa~~l~~s~----~~v~~~l~ra 50 (54)
T PF08281_consen 23 YFQGMSYAEIAEILGISE----STVKRRLRRA 50 (54)
T ss_dssp HTS---HHHHHHHCTS-H----HHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHCcCH----HHHHHHHHHH
Confidence 456788999999999865 5555555443
No 129
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=21.40 E-value=2e+02 Score=19.33 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Q 048549 38 QPVMTRREAAMILGVRESTPTEKVKESHRRVMVA 71 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~ 71 (104)
..-+|..|.-..|||++ ..+.++|+.|-..
T Consensus 33 dkLPSvRelA~~~~VNp----nTv~raY~eLE~e 62 (125)
T COG1725 33 DKLPSVRELAKDLGVNP----NTVQRAYQELERE 62 (125)
T ss_pred CCCCcHHHHHHHhCCCH----HHHHHHHHHHHHC
Confidence 44567888888889876 6889999998763
No 130
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=21.08 E-value=2.2e+02 Score=20.87 Aligned_cols=72 Identities=13% Similarity=0.247 Sum_probs=37.6
Q ss_pred HHHHHHHHhcCCchhhhhhhcCCCCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHH
Q 048549 14 ITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG-SHYLASKINEAKAI 92 (104)
Q Consensus 14 ~~a~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g-~~~~~~~i~~Aye~ 92 (104)
.+-|++|..+-+++ .+-+++.. ++..+|||+...+.+ +++|=.|..+.-=++-. .-.......+||..
T Consensus 16 ~~Ew~RY~~LmqG~------rG~~SPgL---dPLtaLGIeArsd~E--RrryAEl~vk~E~~rvekeLA~qrayd~A~~R 84 (200)
T TIGR03759 16 EDEWQRYQQLMQGP------RGVYSPGL---DPLTALGIEARSDEE--RRRYAELWVKQEAQRVEKELAFQRAYDAAWQR 84 (200)
T ss_pred HHHHHHHHHHhcCC------ccCcCCCC---ChhhhhccccCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777665431 22334444 678999999875554 56665555433111100 01123445667766
Q ss_pred hcch
Q 048549 93 MLRR 96 (104)
Q Consensus 93 L~~~ 96 (104)
|.-.
T Consensus 85 L~p~ 88 (200)
T TIGR03759 85 LYPN 88 (200)
T ss_pred hCCC
Confidence 6543
No 131
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=20.56 E-value=1e+02 Score=22.47 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=21.5
Q ss_pred HHHHHHHhCC---CCCCChHHHHHHHHHHHHH
Q 048549 43 RREAAMILGV---RESTPTEKVKESHRRVMVA 71 (104)
Q Consensus 43 ~~ea~~iLgl---~~~~s~~eIk~~yr~l~~~ 71 (104)
.++|..|.+. +....+.-|+++||+|-.+
T Consensus 150 VEeAl~V~~~~~e~~PLqP~HIREA~rrL~~q 181 (195)
T KOG3219|consen 150 VEEALDVREEWGESGPLQPKHIREAYRRLKLQ 181 (195)
T ss_pred HHHHHHHHHHhccCCCCCcHHHHHHHHHHHhc
Confidence 3677766555 4457899999999998764
No 132
>cd00481 Ribosomal_L19e Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=20.26 E-value=1.5e+02 Score=20.58 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 048549 56 TPTEKVKESHRRVMVANHPDAGGSHYLASKINEAK 90 (104)
Q Consensus 56 ~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Ay 90 (104)
.|.++|++-...=+..-.|.++.|-....+..++.
T Consensus 33 ~tR~dIR~LIkdG~I~~kp~kg~Sr~R~r~~~~~r 67 (145)
T cd00481 33 NTREDIRKLIKDGLIIKKPKKGHSRGRARKRHEAR 67 (145)
T ss_pred hhHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHH
Confidence 46677777776666677888877776666555544
Done!