Query 048549
Match_columns 104
No_of_seqs 109 out of 1348
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 18:21:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048549.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048549hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2guz_A Mitochondrial import in 99.9 2.3E-23 7.9E-28 127.3 7.6 68 32-99 2-70 (71)
2 2guz_B Mitochondrial import in 99.8 4.2E-21 1.4E-25 115.9 5.9 58 41-98 1-61 (65)
3 1faf_A Large T antigen; J doma 99.8 1.9E-19 6.6E-24 111.9 6.1 61 41-101 8-70 (79)
4 2ys8_A RAB-related GTP-binding 99.7 3.7E-18 1.3E-22 108.3 6.5 59 44-102 27-88 (90)
5 1iur_A KIAA0730 protein; DNAJ 99.7 7E-18 2.4E-22 107.0 6.9 63 37-99 9-76 (88)
6 2yua_A Williams-beuren syndrom 99.7 1.6E-17 5.5E-22 106.8 7.1 64 37-100 10-77 (99)
7 2dn9_A DNAJ homolog subfamily 99.7 1.3E-17 4.3E-22 102.9 6.0 61 40-100 3-67 (79)
8 2o37_A Protein SIS1; HSP40, J- 99.7 2.2E-17 7.5E-22 104.9 6.4 60 41-100 5-65 (92)
9 2och_A Hypothetical protein DN 99.7 2.4E-17 8.1E-22 100.5 5.7 58 43-100 7-65 (73)
10 2ctr_A DNAJ homolog subfamily 99.7 2.3E-17 8E-22 103.9 5.8 60 41-100 4-66 (88)
11 2ej7_A HCG3 gene; HCG3 protein 99.7 2.7E-17 9.1E-22 102.1 5.5 59 42-100 7-70 (82)
12 2ctp_A DNAJ homolog subfamily 99.7 1.4E-17 4.8E-22 102.6 3.9 61 40-100 3-66 (78)
13 2ctw_A DNAJ homolog subfamily 99.7 4.9E-17 1.7E-21 106.3 6.5 64 37-100 10-77 (109)
14 1gh6_A Large T antigen; tumor 99.7 1.3E-17 4.6E-22 110.2 2.8 59 43-101 7-67 (114)
15 2dmx_A DNAJ homolog subfamily 99.7 6.9E-17 2.4E-21 102.3 5.6 58 43-100 8-70 (92)
16 1hdj_A Human HSP40, HDJ-1; mol 99.7 9.2E-17 3.1E-21 98.6 4.8 56 45-100 4-62 (77)
17 2ctq_A DNAJ homolog subfamily 99.7 1.1E-16 3.7E-21 105.0 5.4 60 41-100 17-80 (112)
18 2cug_A Mkiaa0962 protein; DNAJ 99.7 1.4E-16 4.7E-21 100.3 5.5 58 43-100 16-76 (88)
19 1wjz_A 1700030A21RIK protein; 99.6 2.6E-17 9E-22 104.4 1.7 62 39-100 11-82 (94)
20 2l6l_A DNAJ homolog subfamily 99.6 3.1E-16 1.1E-20 107.7 6.3 62 39-100 5-76 (155)
21 2lgw_A DNAJ homolog subfamily 99.6 4.2E-16 1.4E-20 100.5 6.0 56 45-100 3-63 (99)
22 2qsa_A DNAJ homolog DNJ-2; J-d 99.6 4.2E-16 1.4E-20 101.5 4.4 58 43-100 14-79 (109)
23 2pf4_E Small T antigen; PP2A, 99.6 1.8E-16 6.3E-21 111.6 1.4 59 43-101 10-70 (174)
24 1bq0_A DNAJ, HSP40; chaperone, 99.6 1.8E-16 6.3E-21 102.4 0.7 56 45-100 4-63 (103)
25 3apq_A DNAJ homolog subfamily 99.5 7.8E-15 2.7E-19 103.2 4.9 57 44-100 2-62 (210)
26 3lz8_A Putative chaperone DNAJ 99.5 1.2E-15 4E-20 116.2 0.0 64 38-101 22-88 (329)
27 1fpo_A HSC20, chaperone protei 99.5 1.2E-14 4E-19 101.8 4.7 56 45-100 2-68 (171)
28 3hho_A CO-chaperone protein HS 99.5 1.9E-14 6.6E-19 100.9 4.6 57 44-100 4-71 (174)
29 2qwo_B Putative tyrosine-prote 99.5 4.7E-15 1.6E-19 94.7 0.9 51 45-95 34-91 (92)
30 3bvo_A CO-chaperone protein HS 99.5 5.8E-14 2E-18 101.0 5.1 58 43-100 42-110 (207)
31 1n4c_A Auxilin; four helix bun 99.4 1.1E-14 3.7E-19 103.1 0.1 57 44-100 117-180 (182)
32 3ag7_A Putative uncharacterize 99.4 8.5E-15 2.9E-19 95.6 -0.9 53 44-97 41-104 (106)
33 3uo3_A J-type CO-chaperone JAC 99.3 1.5E-13 5.3E-18 96.9 0.7 58 43-100 10-75 (181)
34 3apo_A DNAJ homolog subfamily 99.2 1E-12 3.5E-17 107.3 0.2 60 41-100 18-81 (780)
35 2y4t_A DNAJ homolog subfamily 98.5 1.7E-07 5.8E-12 69.3 5.2 56 45-100 383-445 (450)
36 2pzi_A Probable serine/threoni 59.3 2.6 8.8E-05 33.7 0.7 43 46-92 631-675 (681)
37 1ug2_A 2610100B20RIK gene prod 43.6 13 0.00046 23.1 2.0 21 56-76 68-88 (95)
38 4dbb_A Amyloid beta A4 precurs 41.2 15 0.00053 24.3 2.2 37 5-51 121-157 (162)
39 2lr8_A CAsp8-associated protei 45.5 6.3 0.00021 23.3 0.0 22 55-76 47-68 (70)
40 2ket_A Cathelicidin-6; antimic 38.1 33 0.0011 16.0 2.5 17 59-75 4-20 (27)
41 2d7l_A WD repeat and HMG-box D 34.9 29 0.00098 20.4 2.5 37 62-98 17-53 (81)
42 1tzy_B Histone H2B; histone-fo 30.7 34 0.0012 22.3 2.5 17 64-80 41-57 (126)
43 2nqb_D Histone H2B; nucleosome 30.4 34 0.0012 22.2 2.5 17 64-80 38-54 (123)
44 1qqr_A Streptokinase domain B; 30.1 30 0.001 22.9 2.1 30 47-76 35-64 (138)
45 1ckt_A High mobility group 1 p 29.7 73 0.0025 17.4 3.9 36 63-98 14-50 (71)
46 4a3n_A Transcription factor SO 29.4 63 0.0022 17.6 3.3 36 62-98 14-49 (71)
47 2ast_A S-phase kinase-associat 28.4 71 0.0024 20.7 3.9 24 40-63 128-151 (159)
48 3v7d_A Suppressor of kinetocho 26.1 58 0.002 21.6 3.1 24 40-63 135-158 (169)
49 2jpc_A SSRB; DNA binding prote 25.8 27 0.00091 18.4 1.2 30 39-72 12-41 (61)
50 3f27_D Transcription factor SO 25.4 91 0.0031 17.6 3.6 36 62-98 18-53 (83)
51 2eqz_A High mobility group pro 23.9 82 0.0028 18.1 3.2 36 63-98 28-64 (86)
52 2i8b_A Minor nucleoprotein VP3 23.6 40 0.0014 22.2 1.8 20 59-82 85-104 (152)
53 1xsv_A Hypothetical UPF0122 pr 23.3 52 0.0018 20.2 2.3 56 37-94 38-93 (113)
54 2p1m_A SKP1-like protein 1A; F 23.2 1.6E+02 0.0054 19.1 6.2 24 40-63 127-150 (160)
55 1ku3_A Sigma factor SIGA; heli 22.9 44 0.0015 18.4 1.8 30 39-68 29-58 (73)
56 2lxi_A RNA-binding protein 10; 22.8 71 0.0024 18.3 2.8 20 50-69 7-26 (91)
57 2o70_A OHCU decarboxylase; URI 22.2 65 0.0022 21.7 2.8 11 81-91 102-112 (174)
58 2jss_A Chimera of histone H2B. 21.6 90 0.0031 21.3 3.4 20 64-83 8-27 (192)
59 3o7i_A OHCU decarboxylase; lya 21.5 59 0.002 22.3 2.5 12 81-92 123-134 (189)
60 1tty_A Sigma-A, RNA polymerase 20.7 51 0.0017 18.9 1.8 30 39-72 37-66 (87)
61 2crj_A SWI/SNF-related matrix- 20.6 1.2E+02 0.0042 17.6 3.6 35 63-98 20-54 (92)
62 3hug_A RNA polymerase sigma fa 20.4 59 0.002 18.7 2.0 31 38-68 51-81 (92)
No 1
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.3e-23 Score=127.26 Aligned_cols=68 Identities=47% Similarity=0.785 Sum_probs=64.7
Q ss_pred hhcCCCCCCCCHHHHHHHhCCCC-CCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhcc
Q 048549 32 VFEGSFQPVMTRREAAMILGVRE-STPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKR 99 (104)
Q Consensus 32 ~~~~~~~~~m~~~ea~~iLgl~~-~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~r 99 (104)
|+.+++...|+.+++|+||||++ ++|.++|+++||+|++++|||++|+++.|++|++||++|+++..|
T Consensus 2 ~~~g~~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 2 FLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CCCSCCCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred CcCCCCCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 67899999999999999999999 799999999999999999999999999999999999999987655
No 2
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.2e-21 Score=115.86 Aligned_cols=58 Identities=29% Similarity=0.410 Sum_probs=55.2
Q ss_pred CCHHHHHHHhCCCCC---CChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhc
Q 048549 41 MTRREAAMILGVRES---TPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTK 98 (104)
Q Consensus 41 m~~~ea~~iLgl~~~---~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~ 98 (104)
||.+||+.||||+++ ++.++|+++||+|+..||||+|||+|++.+|++|+++|....+
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~~~ 61 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWELA 61 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999 8999999999999999999999999999999999999987643
No 3
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.78 E-value=1.9e-19 Score=111.92 Aligned_cols=61 Identities=16% Similarity=0.253 Sum_probs=57.2
Q ss_pred CCHHHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhcccC
Q 048549 41 MTRREAAMILGVRES--TPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSN 101 (104)
Q Consensus 41 m~~~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~r~~ 101 (104)
....++|+||||+++ +|.++|+++||+|++++|||++|+.+.|++|++||++|+++.+|..
T Consensus 8 ~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~ 70 (79)
T 1faf_A 8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLR 70 (79)
T ss_dssp HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 345789999999999 9999999999999999999999999999999999999999888765
No 4
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.7e-18 Score=108.26 Aligned_cols=59 Identities=25% Similarity=0.424 Sum_probs=55.3
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHhcchhcccCC
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAG---GSHYLASKINEAKAIMLRRTKRSNS 102 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~---g~~~~~~~i~~Aye~L~~~~~r~~~ 102 (104)
.++|+||||+++++.++|+++||+|++++|||++ +..+.|++|++||++|+++.+|+.+
T Consensus 27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~~ 88 (90)
T 2ys8_A 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGPS 88 (90)
T ss_dssp SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccCC
Confidence 5789999999999999999999999999999997 5678999999999999999998875
No 5
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.73 E-value=7e-18 Score=106.97 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=56.8
Q ss_pred CCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcchhcc
Q 048549 37 FQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-----HYLASKINEAKAIMLRRTKR 99 (104)
Q Consensus 37 ~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-----~~~~~~i~~Aye~L~~~~~r 99 (104)
...+++..++|+||||++++|.++|+++||+|++++|||++++ .+.|++|++||++|++...|
T Consensus 9 ~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r 76 (88)
T 1iur_A 9 VPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL 76 (88)
T ss_dssp CCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 3566889999999999999999999999999999999999865 47899999999999987644
No 6
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=106.80 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=58.1
Q ss_pred CCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549 37 FQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 37 ~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
....|+..++|+||||+++++.++|+++||+|++++|||++++ .+.|++|++||++|+++.+|.
T Consensus 10 ~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 77 (99)
T 2yua_A 10 GDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77 (99)
T ss_dssp CCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred CCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4456888999999999999999999999999999999999864 578999999999999998774
No 7
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=102.91 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=55.1
Q ss_pred CCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549 40 VMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
.++..++|+||||+++++.++|+++||+|++++|||++++ .+.|++|++||++|+++.+|.
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 67 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 3555689999999999999999999999999999999864 478999999999999998875
No 8
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.2e-17 Score=104.89 Aligned_cols=60 Identities=27% Similarity=0.359 Sum_probs=55.5
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAG-GSHYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~-g~~~~~~~i~~Aye~L~~~~~r~ 100 (104)
+...++|+||||+++++.++|+++||+|++++|||++ ++.+.|++|++||++|+++.+|.
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~ 65 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKRE 65 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHH
Confidence 3557899999999999999999999999999999997 67899999999999999998774
No 9
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.69 E-value=2.4e-17 Score=100.46 Aligned_cols=58 Identities=21% Similarity=0.329 Sum_probs=53.6
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhcchhccc
Q 048549 43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-~~~~~~i~~Aye~L~~~~~r~ 100 (104)
..++|+||||+++++.++|+++|++|++++|||++++ .+.|++|++||++|+++.+|.
T Consensus 7 ~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~ 65 (73)
T 2och_A 7 ETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQ 65 (73)
T ss_dssp CCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHH
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHH
Confidence 4578999999999999999999999999999999754 689999999999999998874
No 10
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-17 Score=103.90 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=54.5
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
++..++|+||||+++++.++|+++||+|++++|||++++ .+.|.+|++||++|+++.+|.
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 66 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRK 66 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHH
Confidence 445689999999999999999999999999999999876 468999999999999998774
No 11
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.7e-17 Score=102.08 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=53.4
Q ss_pred CHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhcchhccc
Q 048549 42 TRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH-----YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~-----~~~~~i~~Aye~L~~~~~r~ 100 (104)
...++|+||||+++++.++|+++|++|++++|||++++. +.|++|++||++|+++.+|.
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 70 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70 (82)
T ss_dssp SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHH
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 346899999999999999999999999999999998653 58999999999999998874
No 12
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-17 Score=102.56 Aligned_cols=61 Identities=26% Similarity=0.324 Sum_probs=55.1
Q ss_pred CCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhccc
Q 048549 40 VMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~ 100 (104)
.++..++|+||||+++++.++|+++|++|++++|||++++ .+.|.+|++||++|+++.+|.
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 66 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRK 66 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence 3556789999999999999999999999999999999854 578999999999999998775
No 13
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=4.9e-17 Score=106.29 Aligned_cols=64 Identities=25% Similarity=0.359 Sum_probs=57.1
Q ss_pred CCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549 37 FQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 37 ~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
+...++..++|+||||+++++.++|+++||+|++++|||++++ .+.|++|++||++|+++.+|.
T Consensus 10 r~~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~ 77 (109)
T 2ctw_A 10 RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77 (109)
T ss_dssp CCTTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred cccCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3445666799999999999999999999999999999999865 478999999999999998875
No 14
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.67 E-value=1.3e-17 Score=110.18 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=56.0
Q ss_pred HHHHHHHhCCCCCCCh--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhcccC
Q 048549 43 RREAAMILGVRESTPT--EKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSN 101 (104)
Q Consensus 43 ~~ea~~iLgl~~~~s~--~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~r~~ 101 (104)
..++|+||||+++++. ++|+++||+|++++|||++++.+.|++|++||++|+++.+|+.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~ 67 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAH 67 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHH
Confidence 4689999999999988 9999999999999999999999999999999999999999875
No 15
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=6.9e-17 Score=102.32 Aligned_cols=58 Identities=26% Similarity=0.353 Sum_probs=52.8
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcchhccc
Q 048549 43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
..++|+||||+++++.++|+++||+|++++|||++++ .+.|++|++||++|.++.+|.
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 70 (92)
T 2dmx_A 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS 70 (92)
T ss_dssp CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 3579999999999999999999999999999999864 368999999999999998774
No 16
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.65 E-value=9.2e-17 Score=98.65 Aligned_cols=56 Identities=25% Similarity=0.349 Sum_probs=51.6
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcchhccc
Q 048549 45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGG---SHYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Aye~L~~~~~r~ 100 (104)
++|+||||++++|.++|+++|++|++++|||+++ +.+.|.+|++||++|+++.+|.
T Consensus 4 ~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 62 (77)
T 1hdj_A 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62 (77)
T ss_dssp CSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence 5799999999999999999999999999999975 3588999999999999998775
No 17
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=104.98 Aligned_cols=60 Identities=20% Similarity=0.274 Sum_probs=55.0
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
+...++|+||||+++++.++|+++||+|++++|||++++ .+.|++|++||++|+++.+|.
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~ 80 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 455789999999999999999999999999999999864 689999999999999998875
No 18
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1.4e-16 Score=100.34 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=53.3
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcchhccc
Q 048549 43 RREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG---SHYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g---~~~~~~~i~~Aye~L~~~~~r~ 100 (104)
..++|+||||+++++.++|+++||+|++++|||+++ ..+.|++|++||++|.++.+|.
T Consensus 16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 76 (88)
T 2cug_A 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT 76 (88)
T ss_dssp SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHH
Confidence 458999999999999999999999999999999975 4578999999999999998875
No 19
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.65 E-value=2.6e-17 Score=104.37 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC----------CHHHHHHHHHHHHHhcchhccc
Q 048549 39 PVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGG----------SHYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g----------~~~~~~~i~~Aye~L~~~~~r~ 100 (104)
..|+..++|+||||+++++.++|+++||+|++++|||++. ..+.|.+|++||++|+++.+|.
T Consensus 11 ~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 82 (94)
T 1wjz_A 11 EQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK 82 (94)
T ss_dssp SSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred ccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4467789999999999999999999999999999999964 2378999999999999998875
No 20
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.63 E-value=3.1e-16 Score=107.66 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCH----------HHHHHHHHHHHHhcchhccc
Q 048549 39 PVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSH----------YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~----------~~~~~i~~Aye~L~~~~~r~ 100 (104)
..|+..++|+||||+++++.++|+++||+|++++|||++++. +.|.+|++||++|+++.+|+
T Consensus 5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~ 76 (155)
T 2l6l_A 5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKR 76 (155)
T ss_dssp CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHC
T ss_pred ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345667999999999999999999999999999999997432 78999999999999998885
No 21
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.63 E-value=4.2e-16 Score=100.45 Aligned_cols=56 Identities=25% Similarity=0.337 Sum_probs=51.5
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcchhccc
Q 048549 45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
++|+||||++++|.++|+++||+|++++|||++++ .+.|++|++||++|+++.+|.
T Consensus 3 d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~ 63 (99)
T 2lgw_A 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63 (99)
T ss_dssp CHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 57999999999999999999999999999999864 368999999999999998774
No 22
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.61 E-value=4.2e-16 Score=101.53 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=53.6
Q ss_pred HHHHHHHhCCCCCC-ChHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcchhccc
Q 048549 43 RREAAMILGVREST-PTEKVKESHRRVMVANHPDAGGS-------HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~-s~~eIk~~yr~l~~~~HPDk~g~-------~~~~~~i~~Aye~L~~~~~r~ 100 (104)
..++|+||||++++ |.++|+++||+|++++|||++++ .+.|.+|++||++|+++.+|.
T Consensus 14 ~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~ 79 (109)
T 2qsa_A 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKT 79 (109)
T ss_dssp TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 46889999999999 99999999999999999999876 478999999999999998874
No 23
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.59 E-value=1.8e-16 Score=111.55 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=52.3
Q ss_pred HHHHHHHhCCCCCCC--hHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhcccC
Q 048549 43 RREAAMILGVRESTP--TEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTKRSN 101 (104)
Q Consensus 43 ~~ea~~iLgl~~~~s--~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~r~~ 101 (104)
..++|+||||+++++ .++|+++||++++++|||++++.+.|++|++||++|+++.+|+.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~ 70 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAH 70 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 468999999999987 69999999999999999999999999999999999999988864
No 24
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.58 E-value=1.8e-16 Score=102.37 Aligned_cols=56 Identities=23% Similarity=0.400 Sum_probs=51.4
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549 45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
++|+||||++++|.++|+++||+|++++|||++++ .+.|++|++||++|+++.+|.
T Consensus 4 ~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 63 (103)
T 1bq0_A 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63 (103)
T ss_dssp CSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHH
T ss_pred CHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 57999999999999999999999999999999764 478999999999999998774
No 25
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.52 E-value=7.8e-15 Score=103.17 Aligned_cols=57 Identities=21% Similarity=0.369 Sum_probs=51.9
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
.++|+||||++++|.++|+++||+|++++|||++++ .+.|.+|++||++|+++.+|+
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~ 62 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 368999999999999999999999999999999742 478999999999999998875
No 26
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.51 E-value=1.2e-15 Score=116.23 Aligned_cols=64 Identities=22% Similarity=0.334 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcchhcccC
Q 048549 38 QPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS---HYLASKINEAKAIMLRRTKRSN 101 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~---~~~~~~i~~Aye~L~~~~~r~~ 101 (104)
+..|+..++|+||||++++|.++|+++||+|++++|||++.+ .+.|++|++||++|+++.+|+.
T Consensus 22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~ 88 (329)
T 3lz8_A 22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88 (329)
T ss_dssp -------------------------------------------------------------------
T ss_pred cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 455888999999999999999999999999999999999754 5789999999999999988863
No 27
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.51 E-value=1.2e-14 Score=101.76 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=50.6
Q ss_pred HHHHHhCCCCCC--ChHHHHHHHHHHHHHhCCCCCCC--H-------HHHHHHHHHHHHhcchhccc
Q 048549 45 EAAMILGVREST--PTEKVKESHRRVMVANHPDAGGS--H-------YLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 45 ea~~iLgl~~~~--s~~eIk~~yr~l~~~~HPDk~g~--~-------~~~~~i~~Aye~L~~~~~r~ 100 (104)
++|+||||++++ |..+|+++||+|++++|||++++ . +.|..|++||++|+++.+|+
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~ 68 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRA 68 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 689999999998 99999999999999999999643 1 47999999999999998884
No 28
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.49 E-value=1.9e-14 Score=100.87 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=50.8
Q ss_pred HHHHHHhCCCCCCC--hHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcchhccc
Q 048549 44 REAAMILGVRESTP--TEKVKESHRRVMVANHPDAGGS---------HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~s--~~eIk~~yr~l~~~~HPDk~g~---------~~~~~~i~~Aye~L~~~~~r~ 100 (104)
.++|+||||+++++ .++|+++||+|++++|||++++ .+.|..|++||++|+++.+|+
T Consensus 4 ~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~ 71 (174)
T 3hho_A 4 MNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRA 71 (174)
T ss_dssp CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 46899999999876 9999999999999999999642 267999999999999998875
No 29
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.48 E-value=4.7e-15 Score=94.72 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=45.6
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcc
Q 048549 45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-------HYLASKINEAKAIMLR 95 (104)
Q Consensus 45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-------~~~~~~i~~Aye~L~~ 95 (104)
..|++|||++.+|.++|+++||++++++|||++.+ .+.|.+|++||++|.+
T Consensus 34 ~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 34899999999999999999999999999999643 3579999999999975
No 30
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.45 E-value=5.8e-14 Score=100.97 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=51.1
Q ss_pred HHHHHHHhCCCCC--CChHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcchhccc
Q 048549 43 RREAAMILGVRES--TPTEKVKESHRRVMVANHPDAGGS---------HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~--~s~~eIk~~yr~l~~~~HPDk~g~---------~~~~~~i~~Aye~L~~~~~r~ 100 (104)
..++|+||||+++ ++.++|+++||+|++++|||++++ .+.|.+||+||++|+++.+|+
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~ 110 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRG 110 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4579999999986 799999999999999999999653 146899999999999998885
No 31
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.43 E-value=1.1e-14 Score=103.13 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=51.7
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcchhccc
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS-------HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~-------~~~~~~i~~Aye~L~~~~~r~ 100 (104)
.++|++|||+++++.++|+++||+|++++|||++.+ .+.|.+|++||++|+++.+|+
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~ 180 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKP 180 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhh
Confidence 478999999999999999999999999999999632 358999999999999998886
No 32
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.42 E-value=8.5e-15 Score=95.55 Aligned_cols=53 Identities=17% Similarity=0.066 Sum_probs=46.9
Q ss_pred HHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCC----C-------HHHHHHHHHHHHHhcchh
Q 048549 44 REAAMILGVRESTPTEKVKESHRRVMVANHPDAGG----S-------HYLASKINEAKAIMLRRT 97 (104)
Q Consensus 44 ~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g----~-------~~~~~~i~~Aye~L~~~~ 97 (104)
.++|+|||++. +|.++||++||++++++||||+. + .+.|++|++||++|+++.
T Consensus 41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 47899999986 99999999999999999999952 3 468999999999999864
No 33
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.33 E-value=1.5e-13 Score=96.94 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=51.5
Q ss_pred HHHHHHHh------CCCC-CCChHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhcchhccc
Q 048549 43 RREAAMIL------GVRE-STPTEKVKESHRRVMVANHPDAGG-SHYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 43 ~~ea~~iL------gl~~-~~s~~eIk~~yr~l~~~~HPDk~g-~~~~~~~i~~Aye~L~~~~~r~ 100 (104)
..++|+|| |+++ ++|.++|+++||+|++++|||+++ +.+.|.+|++||++|+++.+|+
T Consensus 10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~ 75 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRS 75 (181)
T ss_dssp SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHH
T ss_pred CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHH
Confidence 35789999 4655 799999999999999999999986 6788999999999999998875
No 34
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.22 E-value=1e-12 Score=107.32 Aligned_cols=60 Identities=20% Similarity=0.338 Sum_probs=34.8
Q ss_pred CCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcchhccc
Q 048549 41 MTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGS----HYLASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~----~~~~~~i~~Aye~L~~~~~r~ 100 (104)
....++|+||||++++|.++|+++||+|++++|||++++ .+.|++|++||++|+++.+|+
T Consensus 18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~ 81 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81 (780)
T ss_dssp -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHH
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHH
Confidence 345789999999999999999999999999999999743 468999999999999998875
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.46 E-value=1.7e-07 Score=69.27 Aligned_cols=56 Identities=21% Similarity=0.296 Sum_probs=49.9
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCHH-------HHHHHHHHHHHhcchhccc
Q 048549 45 EAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSHY-------LASKINEAKAIMLRRTKRS 100 (104)
Q Consensus 45 ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~-------~~~~i~~Aye~L~~~~~r~ 100 (104)
+.+.+||+....+.+++++.|+++++++|||+..+.+ .|.+|++||++|.++.+|.
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred hHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4578899999999999999999999999999987654 7999999999999999886
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=59.35 E-value=2.6 Score=33.66 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=31.2
Q ss_pred HHHHhCCCCCCCh--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 048549 46 AAMILGVRESTPT--EKVKESHRRVMVANHPDAGGSHYLASKINEAKAI 92 (104)
Q Consensus 46 a~~iLgl~~~~s~--~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~ 92 (104)
++.+||++.+... .+|+++||+|++..+++ .+.+.-|..|+.+
T Consensus 631 ~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v 675 (681)
T 2pzi_A 631 TNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV 675 (681)
T ss_dssp SSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred CcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence 5578999655433 66999999999977644 4667777777765
No 37
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=43.59 E-value=13 Score=23.08 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.7
Q ss_pred CChHHHHHHHHHHHHHhCCCC
Q 048549 56 TPTEKVKESHRRVMVANHPDA 76 (104)
Q Consensus 56 ~s~~eIk~~yr~l~~~~HPDk 76 (104)
-+.++|+.+|+.|++.+|-.+
T Consensus 68 ks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 68 KTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHHHHh
Confidence 588999999999999998665
No 38
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus}
Probab=41.17 E-value=15 Score=24.32 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhhhhhcCCCCCCCCHHHHHHHhC
Q 048549 5 AAAYAGKYGITAWQAFKAQTPTARMRKVFEGSFQPVMTRREAAMILG 51 (104)
Q Consensus 5 ~~~~~~ra~~~a~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLg 51 (104)
++..+|+||-.||+++...++. .....+..|+.++|+
T Consensus 121 I~~tigqAF~~ay~~~l~~~~~----------~~~~~~~~~~~~~~~ 157 (162)
T 4dbb_A 121 IAQSIGQAFSVAYQEFLRANGI----------NPEDLSQKEYSDLLN 157 (162)
T ss_dssp HHHHHHHHHHHHHGGGTTC--C----------CGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCC----------ChHHcccchhhhhcc
Confidence 5667899999999998877633 122346677777764
No 39
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=45.54 E-value=6.3 Score=23.28 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=18.6
Q ss_pred CCChHHHHHHHHHHHHHhCCCC
Q 048549 55 STPTEKVKESHRRVMVANHPDA 76 (104)
Q Consensus 55 ~~s~~eIk~~yr~l~~~~HPDk 76 (104)
+-|+++|..+|+.|+..+|-.|
T Consensus 47 nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 47 DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 3578999999999999988655
No 40
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=38.09 E-value=33 Score=16.00 Aligned_cols=17 Identities=6% Similarity=0.317 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhCCC
Q 048549 59 EKVKESHRRVMVANHPD 75 (104)
Q Consensus 59 ~eIk~~yr~l~~~~HPD 75 (104)
...++.|++|+++..|-
T Consensus 4 krfrkkfkklfkklspv 20 (27)
T 2ket_A 4 KRFRKKFKKLFKKLSPV 20 (27)
T ss_dssp HHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 45688899999988874
No 41
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.87 E-value=29 Score=20.36 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhc
Q 048549 62 KESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTK 98 (104)
Q Consensus 62 k~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~ 98 (104)
-..+|..++.-||+.....+....|-+-|..|.+..+
T Consensus 17 ~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK 53 (81)
T 2d7l_A 17 LEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEER 53 (81)
T ss_dssp HHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHH
T ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHH
Confidence 3567778888899985346777888888887776543
No 42
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=30.67 E-value=34 Score=22.31 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=13.1
Q ss_pred HHHHHHHHhCCCCCCCH
Q 048549 64 SHRRVMVANHPDAGGSH 80 (104)
Q Consensus 64 ~yr~l~~~~HPDk~g~~ 80 (104)
-..+.+++.|||.+-|.
T Consensus 41 YIyKVLKQVhpd~gISs 57 (126)
T 1tzy_B 41 YVYKVLKQVHPDTGISS 57 (126)
T ss_dssp HHHHHHHHHCTTCEECH
T ss_pred HHHHHHHHhCCCCCcCH
Confidence 35678889999987665
No 43
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=30.45 E-value=34 Score=22.19 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=13.0
Q ss_pred HHHHHHHHhCCCCCCCH
Q 048549 64 SHRRVMVANHPDAGGSH 80 (104)
Q Consensus 64 ~yr~l~~~~HPDk~g~~ 80 (104)
--.+.+++.|||.+-|.
T Consensus 38 YIyKVLKQVhpd~gISs 54 (123)
T 2nqb_D 38 YIYTVLKQVHPDTGISS 54 (123)
T ss_dssp HHHHHHHHHCTTCEECH
T ss_pred HHHHHHHHhCCCCCcCH
Confidence 34678889999987655
No 44
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=30.15 E-value=30 Score=22.94 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=26.5
Q ss_pred HHHhCCCCCCChHHHHHHHHHHHHHhCCCC
Q 048549 47 AMILGVRESTPTEKVKESHRRVMVANHPDA 76 (104)
Q Consensus 47 ~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk 76 (104)
+..+-|....+.+|++.+=..++.+.|||-
T Consensus 35 l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 35 LKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 566778888999999999999999999983
No 45
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=29.70 E-value=73 Score=17.39 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhcchhc
Q 048549 63 ESHRRVMVANHPDAGG-SHYLASKINEAKAIMLRRTK 98 (104)
Q Consensus 63 ~~yr~l~~~~HPDk~g-~~~~~~~i~~Aye~L~~~~~ 98 (104)
...|..++.-||+... -.+....|.+.|..|.+..+
T Consensus 14 ~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK 50 (71)
T 1ckt_A 14 QTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEK 50 (71)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTS
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHH
Confidence 4456666778998753 36788888999998887654
No 46
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=29.39 E-value=63 Score=17.59 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhc
Q 048549 62 KESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTK 98 (104)
Q Consensus 62 k~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~ 98 (104)
...+|..++.-||+.. ..+....|.+.|..|.+..+
T Consensus 14 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK 49 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEK 49 (71)
T ss_dssp HHHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHH
Confidence 4556667777788764 44666667777777765543
No 47
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=28.44 E-value=71 Score=20.69 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=19.1
Q ss_pred CCCHHHHHHHhCCCCCCChHHHHH
Q 048549 40 VMTRREAAMILGVRESTPTEKVKE 63 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~~s~~eIk~ 63 (104)
.+|.+|-+++|||..+.+++|-.+
T Consensus 128 gkt~eeir~~f~I~~d~t~eEe~~ 151 (159)
T 2ast_A 128 GKTPEEIRKTFNIKNDFTEEEEAQ 151 (159)
T ss_dssp SCCHHHHHHHTTCCCCSCTTHHHH
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHH
Confidence 368899999999999877766543
No 48
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=26.14 E-value=58 Score=21.59 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=19.2
Q ss_pred CCCHHHHHHHhCCCCCCChHHHHH
Q 048549 40 VMTRREAAMILGVRESTPTEKVKE 63 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~~s~~eIk~ 63 (104)
..|.+|-+++|||..+.|++|-.+
T Consensus 135 gktpeeiR~~f~I~nd~t~eEe~~ 158 (169)
T 3v7d_A 135 GRSPEEIRRTFNIVNDFTPEEEAA 158 (169)
T ss_dssp TCCHHHHHHHHTCCCCCCHHHHHH
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHH
Confidence 457899999999999988876543
No 49
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=25.83 E-value=27 Score=18.37 Aligned_cols=30 Identities=13% Similarity=0.035 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHh
Q 048549 39 PVMTRREAAMILGVRESTPTEKVKESHRRVMVAN 72 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~ 72 (104)
..++..|--+.||+++ ..|+...+++..+.
T Consensus 12 ~g~s~~eIA~~l~is~----~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 12 EGYTNHGISEKLHISI----KTVETHRMNMMRKL 41 (61)
T ss_dssp TSCCSHHHHHHTCSCH----HHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCH----HHHHHHHHHHHHHH
Confidence 3567788889999855 55666555555555
No 50
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=25.39 E-value=91 Score=17.59 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhc
Q 048549 62 KESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTK 98 (104)
Q Consensus 62 k~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~ 98 (104)
...+|..++.-||+.. ..+....|.+.|..|.+..+
T Consensus 18 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK 53 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEK 53 (83)
T ss_dssp HHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHH
Confidence 4566777778888864 45666777777777765543
No 51
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.86 E-value=82 Score=18.10 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhcchhc
Q 048549 63 ESHRRVMVANHPDAGG-SHYLASKINEAKAIMLRRTK 98 (104)
Q Consensus 63 ~~yr~l~~~~HPDk~g-~~~~~~~i~~Aye~L~~~~~ 98 (104)
..+|.-++.-||+... ..+....|.+.|..|.+..+
T Consensus 28 ~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK 64 (86)
T 2eqz_A 28 QTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEK 64 (86)
T ss_dssp HHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHH
Confidence 5566667778999764 46778888888888876654
No 52
>2i8b_A Minor nucleoprotein VP30; VP30 ebola virus protein, transcription, RNA binding, viral; HET: MSE; 2.00A {Zaire ebolavirus}
Probab=23.61 E-value=40 Score=22.25 Aligned_cols=20 Identities=45% Similarity=0.581 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHH
Q 048549 59 EKVKESHRRVMVANHPDAGGSHYL 82 (104)
Q Consensus 59 ~eIk~~yr~l~~~~HPDk~g~~~~ 82 (104)
+-|.+.|.++ |.||||++|.
T Consensus 85 ~~vlevYqrl----HsDKGG~FEA 104 (152)
T 2i8b_A 85 EPVLEVYQRL----HSDKGGSFEA 104 (152)
T ss_dssp HHHHHHHHHH----HTCSSSHHHH
T ss_pred hHHHHHHHHH----hcccCccHHH
Confidence 5567777764 8899998863
No 53
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=23.29 E-value=52 Score=20.17 Aligned_cols=56 Identities=11% Similarity=-0.043 Sum_probs=37.0
Q ss_pred CCCCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhc
Q 048549 37 FQPVMTRREAAMILGVRESTPTEKVKESHRRVMVANHPDAGGSHYLASKINEAKAIML 94 (104)
Q Consensus 37 ~~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~ 94 (104)
+-..++..|--+.||++...-..-+.++.++|-.... ..+-...+.++...++-|.
T Consensus 38 ~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~--~~~~~~~~~~~~~~~~~~~ 93 (113)
T 1xsv_A 38 YLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK--KLELYQKFEQRREIYDEMK 93 (113)
T ss_dssp HTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH--HHhHHhHHHHHHHHHHHHH
Confidence 3566899999999999887555555555555544431 1244566777777776664
No 54
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=23.24 E-value=1.6e+02 Score=19.07 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=19.6
Q ss_pred CCCHHHHHHHhCCCCCCChHHHHH
Q 048549 40 VMTRREAAMILGVRESTPTEKVKE 63 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~~s~~eIk~ 63 (104)
..|.+|-+++|||..+.|++|-.+
T Consensus 127 gkt~eeir~~f~I~nd~t~eEe~~ 150 (160)
T 2p1m_A 127 GKTPEEIRTTFNIKNDFTPEEEEE 150 (160)
T ss_dssp TCCHHHHHHHTTCCCCCCHHHHHH
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHH
Confidence 468899999999999988776543
No 55
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=22.93 E-value=44 Score=18.39 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHH
Q 048549 39 PVMTRREAAMILGVRESTPTEKVKESHRRV 68 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l 68 (104)
..++..|--+.||++...-..-+.++.++|
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 568999999999996644333344444444
No 56
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=22.78 E-value=71 Score=18.28 Aligned_cols=20 Identities=0% Similarity=0.017 Sum_probs=16.8
Q ss_pred hCCCCCCChHHHHHHHHHHH
Q 048549 50 LGVRESTPTEKVKESHRRVM 69 (104)
Q Consensus 50 Lgl~~~~s~~eIk~~yr~l~ 69 (104)
=||+.+++.++|++.|...-
T Consensus 7 ~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 7 RMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp ETCCSSCCHHHHHHHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHhC
Confidence 47889999999999888764
No 57
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1 PDB: 2o73_A* 2o74_A*
Probab=22.19 E-value=65 Score=21.69 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=8.2
Q ss_pred HHHHHHHHHHH
Q 048549 81 YLASKINEAKA 91 (104)
Q Consensus 81 ~~~~~i~~Aye 91 (104)
+.+..+|.+|+
T Consensus 102 ~~l~~lN~~Y~ 112 (174)
T 2o70_A 102 VHMYRLNSEYK 112 (174)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35777888887
No 58
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=21.61 E-value=90 Score=21.28 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCCCCCCHHHH
Q 048549 64 SHRRVMVANHPDAGGSHYLA 83 (104)
Q Consensus 64 ~yr~l~~~~HPDk~g~~~~~ 83 (104)
.-++..++.|||.+-+.+.+
T Consensus 8 yi~kvLkqv~p~~~iS~~Am 27 (192)
T 2jss_A 8 YIYKVLKQTHPDTGISQKSM 27 (192)
T ss_dssp HHHHHHHHHCSSCCCCHHHH
T ss_pred HHHHHHcccCCCCCcCHHHH
Confidence 45678889999998776443
No 59
>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB: 3o7h_A 3o7j_A* 3o7k_A
Probab=21.53 E-value=59 Score=22.33 Aligned_cols=12 Identities=8% Similarity=-0.200 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHH
Q 048549 81 YLASKINEAKAI 92 (104)
Q Consensus 81 ~~~~~i~~Aye~ 92 (104)
+.+.++|.+|+-
T Consensus 123 ~~L~~LN~~Ye~ 134 (189)
T 3o7i_A 123 QALREGNARYEA 134 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 357778888873
No 60
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=20.68 E-value=51 Score=18.94 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHhCCCCCCChHHHHHHHHHHHHHh
Q 048549 39 PVMTRREAAMILGVRESTPTEKVKESHRRVMVAN 72 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l~~~~ 72 (104)
..+|..|--+.||++. ..|+....+...+.
T Consensus 37 ~~~s~~EIA~~lgis~----~tV~~~~~ra~~kL 66 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTR----ERIRQIEVKALRKL 66 (87)
T ss_dssp SCCCHHHHHHHHTCCH----HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCH----HHHHHHHHHHHHHH
Confidence 6799999999999865 55555555544444
No 61
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=20.60 E-value=1.2e+02 Score=17.58 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=22.7
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcchhc
Q 048549 63 ESHRRVMVANHPDAGGSHYLASKINEAKAIMLRRTK 98 (104)
Q Consensus 63 ~~yr~l~~~~HPDk~g~~~~~~~i~~Aye~L~~~~~ 98 (104)
..+|..++.-||+.. ..+....|.+.|.-|.+..+
T Consensus 20 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK 54 (92)
T 2crj_A 20 NERREQIRTRHPDLP-FPEITKMLGAEWSKLQPAEK 54 (92)
T ss_dssp HHHHHHHHHHCTTCC-HHHHHHHHHHHHHTCCTTHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHH
Confidence 456666677788753 45666777777777766543
No 62
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=20.37 E-value=59 Score=18.74 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=20.0
Q ss_pred CCCCCHHHHHHHhCCCCCCChHHHHHHHHHH
Q 048549 38 QPVMTRREAAMILGVRESTPTEKVKESHRRV 68 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~s~~eIk~~yr~l 68 (104)
-..++..|--++||++...-..-+.++.++|
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 5568999999999997654333333333333
Done!