BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048551
(409 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 131/308 (42%), Gaps = 41/308 (13%)
Query: 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
C+ L ++++ N + G IP+ LG+L +L L L N G IP L L + N
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473
Query: 127 ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQ 186
L GEIP+ + N L +S +LTG++P I L + + N+F G IP G
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 187 LRSLFYLNVGGNQFSG-----MF-----LPVYNLSSLEMIYLHDNRLN------GNLPPV 230
RSL +L++ N F+G MF + ++ +Y+ ++ + GNL
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 231 IGAKLPNLRKIV------IALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATS 284
G + L ++ I + G +F N + L++SYN G +
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 285 YSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSL-------------ATDSLKSIEELD 331
Y LN + G +P + +L L+ L A +L + E+D
Sbjct: 654 YLFILNLGHNDISGS------IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 332 LSSNNLSG 339
LS+NNLSG
Sbjct: 708 LSNNNLSG 715
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 1/164 (0%)
Query: 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
+L+ + + +NG G+IP L N L L L+ N SGTIP++L SKL N+L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
GEIP E+ + LE L LTG++P+ + N ++ + N G+IP+ G+L
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 189 SLFYLNVGGNQFSG-MFLPVYNLSSLEMIYLHDNRLNGNLPPVI 231
+L L + N FSG + + + SL + L+ N NG +P +
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 105/214 (49%), Gaps = 9/214 (4%)
Query: 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
C++L+ ++I+ N + G+ + L+ L +++N F G IP L L+S L A N
Sbjct: 219 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLSLA-EN 276
Query: 127 ILAGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIP-ESP 184
GEIP + G L L G +P + S + NNF G++P ++
Sbjct: 277 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 336
Query: 185 GQLRSLFYLNVGGNQFSGMFLP--VYNLS-SLEMIYLHDNRLNGNLPPVIGAKLPN-LRK 240
++R L L++ N+FSG LP + NLS SL + L N +G + P + N L++
Sbjct: 337 LKMRGLKVLDLSFNEFSGE-LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 395
Query: 241 IVIALNNFTGPLPDSFSNASNRERLELSYNQFRG 274
+ + N FTG +P + SN S L LS+N G
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 127/308 (41%), Gaps = 28/308 (9%)
Query: 66 TCASLRFINIADNGVQ--GEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRS---KLML 120
+C+ L+F+N++ N + G++ L L LE L L+ NS SG L +L
Sbjct: 121 SCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 179
Query: 121 FFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKI 180
+ N ++G++ ++ LE L + +P + + S+ D + N G
Sbjct: 180 LAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 236
Query: 181 PESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRK 240
+ L LN+ NQF G +P L SL+ + L +N+ G +P + L
Sbjct: 237 SRAISTCTELKLLNISSNQFVGP-IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 295
Query: 241 IVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQ 300
+ ++ N+F G +P F + S E L LS N F G+ + ++ D N +
Sbjct: 296 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 355
Query: 301 QNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQXXXXXXXXXXXXXXXXY--- 357
LP ++NL S+ LDLSSNN SG Y
Sbjct: 356 -----LPESLTNLS----------ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 358 NHFDGEVP 365
N F G++P
Sbjct: 401 NGFTGKIP 408
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 7/139 (5%)
Query: 58 NLCEWTGVTCASLRFI------NIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTN 111
NL E+ G+ L + NI G N + L ++ N SG IP
Sbjct: 589 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 648
Query: 112 LSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADS 171
+ L + N ++G IP E+G+L L L KL G++P ++ L+ E D
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 172 NRNNFGGKIPESPGQLRSL 190
+ NN G IPE GQ +
Sbjct: 709 SNNNLSGPIPEM-GQFETF 726
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 131/308 (42%), Gaps = 41/308 (13%)
Query: 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
C+ L ++++ N + G IP+ LG+L +L L L N G IP L L + N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 127 ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQ 186
L GEIP+ + N L +S +LTG++P I L + + N+F G IP G
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 187 LRSLFYLNVGGNQFSG-----MF-----LPVYNLSSLEMIYLHDNRLN------GNLPPV 230
RSL +L++ N F+G MF + ++ +Y+ ++ + GNL
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 231 IGAKLPNLRKIV------IALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATS 284
G + L ++ I + G +F N + L++SYN G +
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 285 YSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSL-------------ATDSLKSIEELD 331
Y LN + G +P + +L L+ L A +L + E+D
Sbjct: 657 YLFILNLGHNDISGS------IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 332 LSSNNLSG 339
LS+NNLSG
Sbjct: 711 LSNNNLSG 718
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 1/164 (0%)
Query: 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128
+L+ + + +NG G+IP L N L L L+ N SGTIP++L SKL N+L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 129 AGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLR 188
GEIP E+ + LE L LTG++P+ + N ++ + N G+IP+ G+L
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 189 SLFYLNVGGNQFSG-MFLPVYNLSSLEMIYLHDNRLNGNLPPVI 231
+L L + N FSG + + + SL + L+ N NG +P +
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 105/214 (49%), Gaps = 9/214 (4%)
Query: 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN 126
C++L+ ++I+ N + G+ + L+ L +++N F G IP L L+S L A N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLSLA-EN 279
Query: 127 ILAGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIP-ESP 184
GEIP + G L L G +P + S + NNF G++P ++
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL 339
Query: 185 GQLRSLFYLNVGGNQFSGMFLP--VYNLS-SLEMIYLHDNRLNGNLPPVIGAKLPN-LRK 240
++R L L++ N+FSG LP + NLS SL + L N +G + P + N L++
Sbjct: 340 LKMRGLKVLDLSFNEFSGE-LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 241 IVIALNNFTGPLPDSFSNASNRERLELSYNQFRG 274
+ + N FTG +P + SN S L LS+N G
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 127/308 (41%), Gaps = 28/308 (9%)
Query: 66 TCASLRFINIADNGVQ--GEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRS---KLML 120
+C+ L+F+N++ N + G++ L L LE L L+ NS SG L +L
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182
Query: 121 FFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKI 180
+ N ++G++ ++ LE L + +P + + S+ D + N G
Sbjct: 183 LAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239
Query: 181 PESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRK 240
+ L LN+ NQF G +P L SL+ + L +N+ G +P + L
Sbjct: 240 SRAISTCTELKLLNISSNQFVGP-IPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298
Query: 241 IVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQ 300
+ ++ N+F G +P F + S E L LS N F G+ + ++ D N +
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358
Query: 301 QNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQXXXXXXXXXXXXXXXXY--- 357
LP ++NL S+ LDLSSNN SG Y
Sbjct: 359 -----LPESLTNLS----------ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 358 NHFDGEVP 365
N F G++P
Sbjct: 404 NGFTGKIP 411
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 7/139 (5%)
Query: 58 NLCEWTGVTCASLRFI------NIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTN 111
NL E+ G+ L + NI G N + L ++ N SG IP
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 112 LSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADS 171
+ L + N ++G IP E+G+L L L KL G++P ++ L+ E D
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 172 NRNNFGGKIPESPGQLRSL 190
+ NN G IPE GQ +
Sbjct: 712 SNNNLSGPIPEM-GQFETF 729
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 107/233 (45%), Gaps = 14/233 (6%)
Query: 28 ANETDRLALLAIKSQLHDPLEVTSSLTNSVNLC--EWTGVTC----ASLRFINIADNGVQ 81
N D+ ALL IK L +P ++S L + + C W GV C + R N+ +G+
Sbjct: 3 CNPQDKQALLQIKKDLGNPTTLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 82 ----GEIPNELGNLVRLEKLILAN-NSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEI 136
IP+ L NL L L + N+ G IP ++ ++L + ++G IP +
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 137 GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFY-LNV 195
+ L L F L+G LP SI +L + + + N G IP+S G LF + +
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 196 GGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF 248
N+ +G P + +L + L N L G+ + G+ N +KI +A N+
Sbjct: 182 SRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD-KNTQKIHLAKNSL 233
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 47/180 (26%)
Query: 70 LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILA 129
L ++ I V G IP+ L + L L + N+ SGT+P ++S L+ + N ++
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 130 GEIPAEIGNLFKL-EKLSFCVIKLTGQLPASIQNLS--------SHLEADSN-------- 172
G IP G+ KL ++ +LTG++P + NL+ + LE D++
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 173 -----------------------------RNN-FGGKIPESPGQLRSLFYLNVGGNQFSG 202
RNN G +P+ QL+ L LNV N G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 18/137 (13%)
Query: 68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI 127
SL FI +N ++ E+P EL NL L + NNS LSL S A NI
Sbjct: 173 PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLES----IVAGNNI 226
Query: 128 LAGEIPAEIGNLFKLEKLSF-CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQ 186
L E+P +L+ L F I L ++ +L LEA + R+N+ +PE P
Sbjct: 227 LE-ELP-------ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELP-- 276
Query: 187 LRSLFYLNVGGNQFSGM 203
+SL +L+V N FSG+
Sbjct: 277 -QSLTFLDVSENIFSGL 292
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 186 QLRSLFYLNVGGNQFSGMFLPVYN-LSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIA 244
+L +L YL + GNQ + V++ L++L+ + L +N+L +LP + KL NL + +A
Sbjct: 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLA 141
Query: 245 LNNFTGPLPDSFSNASNRERLELSYNQFR 273
N F +N L+LSYNQ +
Sbjct: 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 108 IPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHL 167
I N+ L + N N L E+PAEI NL L L +LT LPA + + L
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGS-CFQL 295
Query: 168 EADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLE--MIYLHDNRLNG 225
+ +N +P G L +L +L V GN FL + S+ + YL DNR
Sbjct: 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355
Query: 226 NLP 228
LP
Sbjct: 356 PLP 358
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 68/171 (39%), Gaps = 19/171 (11%)
Query: 68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI 127
+S F+N N + L RL+ LIL N ++L +K M ++
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF--KVALMTKNMSSLETLDV 410
Query: 128 LAGEIPAEIGNLFKLEKLSFCVIKLTGQ---------LPASIQNLSSHLEADSNRNNFGG 178
+ + + S V+ L+ LP ++ L H NN
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH-------NNRIM 463
Query: 179 KIPESPGQLRSLFYLNVGGNQFSGMFLPVYN-LSSLEMIYLHDNRLNGNLP 228
IP+ L++L LNV NQ + V++ L+SL+ I+LHDN + P
Sbjct: 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 16/186 (8%)
Query: 70 LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILA 129
L ++ + ++ V+ P + NL L L L N P L+ + L F A N +
Sbjct: 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212
Query: 130 GEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLS--SHLEADSNRNNFGGKIPESPGQL 187
P + N +L L K+T P + NLS + LE +N+ + + + L
Sbjct: 213 DITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKD----L 264
Query: 188 RSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNN 247
L LNVG NQ S + + + NLS L ++L++N+L VIG L NL + ++ N+
Sbjct: 265 TKLKXLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDXEVIGG-LTNLTTLFLSQNH 322
Query: 248 FTGPLP 253
T P
Sbjct: 323 ITDIRP 328
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 19/147 (12%)
Query: 193 LNVGGNQFSGMFLPVYN-LSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGP 251
L++ N+ S + ++ L+ L ++YL+DN+L LP I +L NL + + N
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 252 LPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGIS 311
F N L L NQ + S R+ D + YL G +
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLK----------SLPPRVFDS-------LTKLTYLSLGYN 143
Query: 312 NLVNLDSLATDSLKSIEELDLSSNNLS 338
L +L D L S++EL L +N L
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLK 170
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 32/174 (18%)
Query: 165 SHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLN 224
+ L+AD G K + L +L +N NQ + + P+ NL+ L I +++N++
Sbjct: 44 TTLQADR----LGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQI- 97
Query: 225 GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATS 284
++ P+ A L NL + + N T D N +N RLELS N S S TS
Sbjct: 98 ADITPL--ANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISAL-SGLTS 152
Query: 285 YSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLS 338
Q+LN G Q + +L LA +L ++E LD+SSN +S
Sbjct: 153 L-QQLN------FGNQ------------VTDLKPLA--NLTTLERLDISSNKVS 185
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 32/174 (18%)
Query: 165 SHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLN 224
+ L+AD G K + L +L +N NQ + + P+ NL+ L I +++N++
Sbjct: 44 TTLQADR----LGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQI- 97
Query: 225 GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATS 284
++ P+ A L NL + + N T D N +N RLELS N S S TS
Sbjct: 98 ADITPL--ANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISAL-SGLTS 152
Query: 285 YSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLS 338
Q+LN G Q + +L LA +L ++E LD+SSN +S
Sbjct: 153 L-QQLN------FGNQ------------VTDLKPLA--NLTTLERLDISSNKVS 185
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 8/120 (6%)
Query: 156 LPASIQNLSSHLEADSNRNNFGGKIPESP-GQLRSLFYLNVGGNQFSGMFLPVYN-LSSL 213
+P I + ++ LE +SN+ +P +L L L++ NQ + V++ L+ L
Sbjct: 22 VPTGIPSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78
Query: 214 EMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDS-FSNASNRERLELSYNQF 272
++YLH+N+L +LP + KL L+++ + N +PD F ++ +++ L N +
Sbjct: 79 TILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 136
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 165 SHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLN 224
+ L+AD G K + L +L +N NQ + + P+ NL+ L I +++N++
Sbjct: 48 TTLQADR----LGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQI- 101
Query: 225 GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATS 284
++ P+ A L NL + + N T D N +N RLELS N S S TS
Sbjct: 102 ADITPL--ANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISAL-SGLTS 156
Query: 285 YSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLS 338
Q G Q + +L LA +L ++E LD+SSN +S
Sbjct: 157 LQQL-------SFGNQ------------VTDLKPLA--NLTTLERLDISSNKVS 189
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 216 IYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFR 273
+ L+DN L + +LP+L K+ + N TG P++F AS+ + L+L N+ +
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 32/174 (18%)
Query: 165 SHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLN 224
+ L+AD G K + L +L +N NQ + + P+ NL+ L I +++N++
Sbjct: 49 TTLQADR----LGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQI- 102
Query: 225 GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATS 284
++ P+ A L NL + + N T D N +N RLELS N S S TS
Sbjct: 103 ADITPL--ANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISAL-SGLTS 157
Query: 285 YSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLS 338
Q G Q + +L LA +L ++E LD+SSN +S
Sbjct: 158 LQQL-------SFGNQ------------VTDLKPLA--NLTTLERLDISSNKVS 190
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 77/174 (44%), Gaps = 31/174 (17%)
Query: 165 SHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLN 224
+ L+AD G K + L +L +N NQ + + P+ NL+ L I +++N++
Sbjct: 44 TTLQADR----LGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQI- 97
Query: 225 GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATS 284
++ P+ A L NL + + N T D N +N RLELS N S S TS
Sbjct: 98 ADITPL--ANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISAL-SGLTS 152
Query: 285 YSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLS 338
Q N Q + +L LA +L ++E LD+SSN +S
Sbjct: 153 LQQL------NFSSNQ------------VTDLKPLA--NLTTLERLDISSNKVS 186
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 35/199 (17%)
Query: 51 SSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIP- 109
S++T++V + G+ A+L N ++G L NL+ LE L +N + P
Sbjct: 35 SNVTDAVTQADLDGI--ATLSAFNTGVTTIEGI--QYLNNLIGLE---LKDNQITDLTPL 87
Query: 110 TNLSLRSKLMLF---FANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLP----ASIQN 162
NL+ ++L L N + +AG L ++ L ++T P +++Q
Sbjct: 88 KNLTKITELELSGNPLKNVSAIAG--------LQSIKTLDLTSTQITDVTPLAGLSNLQV 139
Query: 163 LSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNR 222
L L +N + G L +L YL++G NQ + + P+ NLS L + DN+
Sbjct: 140 LYLDLNQITNISPLAG--------LTNLQYLSIGNNQVNDLT-PLANLSKLTTLRADDNK 190
Query: 223 LNGNLPPVIGAKLPNLRKI 241
+ ++ P+ A LPNL ++
Sbjct: 191 I-SDISPL--ASLPNLIEV 206
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 31/174 (17%)
Query: 165 SHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLN 224
+ L+AD G K + L +L +N NQ + + P+ NL+ L I +++N++
Sbjct: 44 TTLQADR----LGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQI- 97
Query: 225 GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATS 284
++ P+ A L NL + + N T D N +N RLELS N S S TS
Sbjct: 98 ADITPL--ANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISAL-SGLTS 152
Query: 285 YSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLS 338
Q + + +++L L +L T +E LD+SSN +S
Sbjct: 153 LQQ---------------LSFSSNQVTDLKPLANLTT-----LERLDISSNKVS 186
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 31/174 (17%)
Query: 165 SHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLN 224
+ L+AD G K + L +L +N NQ + + P+ NL+ L I +++N++
Sbjct: 44 TTLQADR----LGIKSIDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQI- 97
Query: 225 GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATS 284
++ P+ A L NL + + N T D N +N RLELS N S S TS
Sbjct: 98 ADITPL--ANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISDISAL-SGLTS 152
Query: 285 YSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLS 338
Q + + +++L L +L T +E LD+SSN +S
Sbjct: 153 LQQ---------------LSFSSNQVTDLKPLANLTT-----LERLDISSNKVS 186
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 22/122 (18%)
Query: 214 EMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLP-DSFSNASNRERLELSYNQF 272
+++YLHDN++ L P + L NL+++ + N G LP F + + L+L NQ
Sbjct: 43 QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL 100
Query: 273 RGKSIWRSAATSYSQRLNDDDQNHHGRQQNICY-----LPTGISNLVNLDSLATD--SLK 325
++ SA D+ H ++ +C LP GI L +L LA D LK
Sbjct: 101 ---TVLPSAVF---------DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
Query: 326 SI 327
SI
Sbjct: 149 SI 150
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 187 LRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALN 246
L ++ YL +GGN+ + + L++L + L N+L LP + KL NL+++V+ N
Sbjct: 62 LPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVEN 119
Query: 247 NFTGPLPDS-FSNASNRERLELSYNQFR 273
LPD F +N L L +NQ +
Sbjct: 120 QLQS-LPDGVFDKLTNLTYLYLYHNQLQ 146
>pdb|3NRK|A Chain A, The Crystal Structure Of The Leptospiral Hypothetical
Protein Lic12922
Length = 325
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 136 IGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLE----ADSNRNNFGGKIPESPGQL 187
+ +F+ E+ +C++K+ G+ P ++NL ++ D + F + ES ++
Sbjct: 245 VSEVFRDERKRYCILKIEGKRPTPMENLRGGIQNILYRDKEEDTFHRWLKESRAEI 300
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 184 PGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRL 223
P L+ LF + G + F+PV+NL +LE +YL N +
Sbjct: 101 PKSLKHLFLIQTGISNLE--FIPVHNLENLESLYLGSNHI 138
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 187 LRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIAL 245
L +L L+V N+ + + L + L L+ +YL N L LPP + P L K+ +A
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 246 NNFT 249
NN T
Sbjct: 158 NNLT 161
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 187 LRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIAL 245
L +L L+V N+ + + L + L L+ +YL N L LPP + P L K+ +A
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 246 NNFT 249
NN T
Sbjct: 158 NNLT 161
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 187 LRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIAL 245
L +L L+V N+ + + L + L L+ +YL N L LPP + P L K+ +A
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 246 NNFT 249
NN T
Sbjct: 158 NNLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 187 LRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIAL 245
L +L L+V N+ + + L + L L+ +YL N L LPP + P L K+ +A
Sbjct: 100 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 158
Query: 246 NNFT 249
NN T
Sbjct: 159 NNLT 162
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 187 LRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIAL 245
L +L L+V N+ + + L + L L+ +YL N L LPP + P L K+ +A
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
Query: 246 NNFT 249
NN T
Sbjct: 158 NNLT 161
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 184 PGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNG 225
P L+ LF++ G + F+P++N +LE +YL N ++
Sbjct: 104 PKALKHLFFIQTGISSID--FIPLHNQKTLESLYLGSNHISS 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,318,182
Number of Sequences: 62578
Number of extensions: 441675
Number of successful extensions: 949
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 774
Number of HSP's gapped (non-prelim): 125
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)