Query 048551
Match_columns 409
No_of_seqs 395 out of 3696
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 10:32:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048551.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048551hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-43 4.8E-48 380.2 28.6 328 29-366 27-374 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.7E-37 1.7E-41 329.5 21.8 319 66-389 116-469 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.9E-32 6.2E-37 257.4 4.8 305 69-385 103-453 (873)
4 KOG4194 Membrane glycoprotein 100.0 7.6E-32 1.7E-36 254.6 4.5 305 69-385 79-430 (873)
5 KOG0444 Cytoskeletal regulator 100.0 5.9E-31 1.3E-35 250.3 -4.0 301 69-385 56-376 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 2.6E-30 5.6E-35 246.0 -6.9 311 70-397 9-339 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 3.6E-30 7.8E-35 233.7 -7.7 307 69-384 69-541 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 3.4E-28 7.4E-33 220.9 -10.7 264 69-384 46-310 (565)
9 PLN03210 Resistant to P. syrin 99.9 8E-22 1.7E-26 214.3 24.2 277 92-385 611-907 (1153)
10 PRK15370 E3 ubiquitin-protein 99.9 5.8E-22 1.3E-26 202.9 20.0 224 26-274 58-360 (754)
11 PRK15387 E3 ubiquitin-protein 99.9 6.2E-22 1.3E-26 201.7 16.2 259 69-389 202-462 (788)
12 KOG0618 Serine/threonine phosp 99.9 1.8E-24 3.8E-29 214.8 -4.8 299 67-383 44-488 (1081)
13 PRK15387 E3 ubiquitin-protein 99.9 2.7E-21 5.9E-26 197.0 13.6 240 69-366 223-463 (788)
14 KOG0618 Serine/threonine phosp 99.8 5.2E-23 1.1E-27 204.4 -1.6 275 92-381 219-510 (1081)
15 PLN03210 Resistant to P. syrin 99.8 2.2E-19 4.7E-24 195.4 21.6 262 67-359 610-904 (1153)
16 KOG4237 Extracellular matrix p 99.8 4.1E-22 8.9E-27 181.2 -2.3 273 69-360 68-358 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 1E-19 2.2E-24 186.5 11.8 230 68-338 199-428 (754)
18 cd00116 LRR_RI Leucine-rich re 99.8 1E-20 2.2E-25 178.8 -0.2 275 72-383 2-319 (319)
19 KOG0617 Ras suppressor protein 99.8 6.6E-21 1.4E-25 154.9 -4.3 159 69-232 34-193 (264)
20 KOG0617 Ras suppressor protein 99.8 2.2E-20 4.8E-25 151.8 -3.6 181 87-273 28-212 (264)
21 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-18 2.3E-23 165.0 2.7 253 69-359 24-318 (319)
22 KOG4237 Extracellular matrix p 99.7 6.2E-20 1.3E-24 167.1 -7.6 252 69-338 92-359 (498)
23 PLN03150 hypothetical protein; 99.6 2.7E-15 5.8E-20 153.1 12.4 146 27-176 368-527 (623)
24 KOG0532 Leucine-rich repeat (L 99.5 5E-16 1.1E-20 147.8 -4.0 195 72-276 54-250 (722)
25 KOG0532 Leucine-rich repeat (L 99.4 2.3E-15 4.9E-20 143.4 -5.3 192 69-270 76-270 (722)
26 COG4886 Leucine-rich repeat (L 99.4 3.5E-13 7.7E-18 131.2 5.7 196 72-276 97-293 (394)
27 COG4886 Leucine-rich repeat (L 99.3 1.7E-12 3.6E-17 126.5 4.8 180 69-256 117-297 (394)
28 PLN03150 hypothetical protein; 99.2 2E-11 4.4E-16 124.8 8.9 116 238-397 420-538 (623)
29 KOG1259 Nischarin, modulator o 99.2 9.2E-12 2E-16 110.5 2.6 108 160-273 280-387 (490)
30 PF14580 LRR_9: Leucine-rich r 99.1 3.5E-11 7.7E-16 101.9 3.7 108 90-202 17-127 (175)
31 KOG3207 Beta-tubulin folding c 99.1 1.2E-11 2.6E-16 114.9 0.2 138 138-276 119-262 (505)
32 PF14580 LRR_9: Leucine-rich r 99.1 1E-10 2.2E-15 99.1 5.1 109 162-274 17-127 (175)
33 KOG4658 Apoptotic ATPase [Sign 99.1 2.5E-10 5.4E-15 119.6 7.8 274 69-362 524-808 (889)
34 KOG1259 Nischarin, modulator o 99.0 1.5E-11 3.3E-16 109.1 -1.7 129 114-249 282-412 (490)
35 KOG3207 Beta-tubulin folding c 99.0 3.3E-11 7.2E-16 112.0 -0.7 207 69-275 122-341 (505)
36 KOG1909 Ran GTPase-activating 99.0 3E-11 6.6E-16 109.3 -1.5 227 69-297 31-311 (382)
37 KOG1909 Ran GTPase-activating 99.0 8.7E-11 1.9E-15 106.4 0.2 186 87-273 25-254 (382)
38 KOG0531 Protein phosphatase 1, 98.9 1.1E-10 2.4E-15 114.2 -1.5 151 90-249 70-221 (414)
39 KOG0531 Protein phosphatase 1, 98.8 2.6E-10 5.7E-15 111.6 -2.1 199 66-276 70-271 (414)
40 PF13855 LRR_8: Leucine rich r 98.8 3.5E-09 7.6E-14 73.8 3.9 57 94-150 3-59 (61)
41 KOG4658 Apoptotic ATPase [Sign 98.8 1.9E-09 4.2E-14 113.1 2.8 130 66-196 543-676 (889)
42 PF13855 LRR_8: Leucine rich r 98.8 7.7E-09 1.7E-13 72.0 4.2 60 69-128 2-61 (61)
43 KOG1859 Leucine-rich repeat pr 98.6 3.2E-09 7E-14 104.6 -3.7 196 139-385 83-293 (1096)
44 KOG1859 Leucine-rich repeat pr 98.5 3.1E-09 6.8E-14 104.7 -4.9 127 117-249 165-292 (1096)
45 PF08263 LRRNT_2: Leucine rich 98.5 2.1E-07 4.6E-12 59.5 4.0 39 30-68 2-43 (43)
46 COG5238 RNA1 Ran GTPase-activa 98.3 1.7E-07 3.8E-12 82.6 0.2 205 69-275 31-287 (388)
47 KOG2120 SCF ubiquitin ligase, 98.2 1.8E-08 4E-13 89.7 -6.9 175 93-270 186-373 (419)
48 KOG2982 Uncharacterized conser 98.1 1E-06 2.2E-11 78.8 2.2 210 87-297 40-262 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.1 6E-07 1.3E-11 79.3 0.6 114 161-275 89-229 (388)
50 KOG4579 Leucine-rich repeat (L 98.1 8.6E-08 1.9E-12 75.9 -4.1 111 139-253 52-163 (177)
51 KOG2120 SCF ubiquitin ligase, 98.1 1.7E-07 3.6E-12 83.7 -3.1 176 188-381 185-373 (419)
52 KOG2982 Uncharacterized conser 98.1 5.9E-07 1.3E-11 80.3 -0.4 84 163-246 70-156 (418)
53 KOG4579 Leucine-rich repeat (L 98.0 4.2E-07 9.2E-12 72.1 -3.2 103 71-177 30-136 (177)
54 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.5E-10 51.6 3.5 38 236-274 1-38 (44)
55 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.3E-10 51.7 3.0 12 94-105 3-14 (44)
56 PRK15386 type III secretion pr 97.8 6.5E-05 1.4E-09 71.8 8.4 131 67-221 51-187 (426)
57 KOG1644 U2-associated snRNP A' 97.8 3.8E-05 8.3E-10 65.2 6.0 59 93-153 43-101 (233)
58 KOG1644 U2-associated snRNP A' 97.8 4.1E-05 8.8E-10 65.0 5.7 107 64-173 38-149 (233)
59 KOG3665 ZYG-1-like serine/thre 97.7 1.2E-05 2.6E-10 82.9 1.5 183 69-255 61-269 (699)
60 PRK15386 type III secretion pr 97.6 0.00051 1.1E-08 65.8 10.4 111 69-199 73-188 (426)
61 KOG3665 ZYG-1-like serine/thre 97.6 2.3E-05 5E-10 80.7 0.9 151 92-244 122-283 (699)
62 PF13306 LRR_5: Leucine rich r 97.4 0.00076 1.6E-08 54.3 7.5 58 88-147 8-65 (129)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00085 1.9E-08 54.0 7.6 83 111-196 7-89 (129)
64 KOG2739 Leucine-rich acidic nu 97.1 0.0002 4.4E-09 63.3 1.3 90 84-177 35-129 (260)
65 KOG2739 Leucine-rich acidic nu 96.9 0.00056 1.2E-08 60.6 2.8 84 139-224 42-129 (260)
66 KOG2123 Uncharacterized conser 96.8 3.3E-05 7.2E-10 68.7 -6.1 82 69-155 20-103 (388)
67 KOG2123 Uncharacterized conser 96.6 8.6E-05 1.9E-09 66.1 -4.9 100 90-194 17-123 (388)
68 PF00560 LRR_1: Leucine Rich R 95.7 0.0042 9.1E-08 33.1 0.8 21 326-347 1-21 (22)
69 KOG4341 F-box protein containi 95.6 0.00035 7.6E-09 65.7 -6.1 56 323-378 399-459 (483)
70 PF00560 LRR_1: Leucine Rich R 95.2 0.0084 1.8E-07 31.9 0.8 11 95-105 3-13 (22)
71 KOG4341 F-box protein containi 94.7 0.001 2.2E-08 62.6 -6.0 64 322-385 369-440 (483)
72 KOG1947 Leucine rich repeat pr 94.1 0.011 2.5E-07 58.8 -0.6 16 370-385 426-441 (482)
73 KOG4308 LRR-containing protein 94.0 0.00041 8.9E-09 68.6 -11.0 181 94-275 89-305 (478)
74 KOG1947 Leucine rich repeat pr 93.6 0.0059 1.3E-07 60.9 -3.7 110 91-200 187-307 (482)
75 PF13504 LRR_7: Leucine rich r 93.6 0.043 9.3E-07 27.1 1.2 14 325-338 1-14 (17)
76 PF13516 LRR_6: Leucine Rich r 91.6 0.078 1.7E-06 28.7 0.7 22 324-345 1-22 (24)
77 KOG0473 Leucine-rich repeat pr 91.5 0.0069 1.5E-07 52.9 -5.5 89 183-274 37-125 (326)
78 smart00370 LRR Leucine-rich re 90.6 0.25 5.4E-06 27.2 2.1 20 324-344 1-20 (26)
79 smart00369 LRR_TYP Leucine-ric 90.6 0.25 5.4E-06 27.2 2.1 20 324-344 1-20 (26)
80 KOG0473 Leucine-rich repeat pr 90.1 0.0069 1.5E-07 52.9 -6.7 88 87-177 37-124 (326)
81 smart00369 LRR_TYP Leucine-ric 89.4 0.32 6.9E-06 26.8 1.9 20 211-231 2-21 (26)
82 smart00370 LRR Leucine-rich re 89.4 0.32 6.9E-06 26.8 1.9 20 211-231 2-21 (26)
83 KOG4308 LRR-containing protein 87.9 0.015 3.3E-07 57.7 -7.1 108 165-273 88-217 (478)
84 KOG3864 Uncharacterized conser 79.8 0.5 1.1E-05 40.7 -0.3 59 327-385 103-165 (221)
85 smart00364 LRR_BAC Leucine-ric 79.0 1.3 2.8E-05 24.5 1.2 18 325-343 2-19 (26)
86 smart00365 LRR_SD22 Leucine-ri 78.5 1.9 4E-05 23.9 1.8 14 325-338 2-15 (26)
87 KOG3864 Uncharacterized conser 76.9 0.57 1.2E-05 40.4 -0.8 34 165-198 102-135 (221)
88 smart00368 LRR_RI Leucine rich 73.8 2.7 5.9E-05 23.6 1.7 15 325-339 2-16 (28)
89 KOG3763 mRNA export factor TAP 59.2 6.4 0.00014 39.3 2.1 34 188-221 218-254 (585)
90 KOG3763 mRNA export factor TAP 55.6 7.2 0.00016 38.9 1.8 62 323-385 216-283 (585)
91 smart00367 LRR_CC Leucine-rich 55.3 8.5 0.00018 21.0 1.4 17 370-386 1-17 (26)
92 KOG4242 Predicted myosin-I-bin 51.5 31 0.00068 33.9 5.3 21 116-136 165-185 (553)
93 KOG4242 Predicted myosin-I-bin 49.1 38 0.00083 33.4 5.5 60 69-128 215-280 (553)
94 PRK00442 tatA twin arginine tr 36.8 41 0.00089 25.1 2.9 45 1-45 1-45 (92)
95 PRK04561 tatA twin arginine tr 30.8 67 0.0015 22.9 3.0 45 1-45 1-45 (75)
96 PRK02958 tatA twin arginine tr 25.3 89 0.0019 22.3 2.9 45 1-45 1-45 (73)
97 TIGR00864 PCC polycystin catio 23.6 47 0.001 40.1 1.9 31 194-224 1-32 (2740)
98 PRK00720 tatA twin arginine tr 23.6 1.2E+02 0.0025 22.0 3.2 46 1-46 1-46 (78)
99 TIGR00864 PCC polycystin catio 20.3 65 0.0014 39.0 2.2 32 217-249 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-43 Score=380.18 Aligned_cols=328 Identities=32% Similarity=0.494 Sum_probs=257.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCceeeecC---CCcEEEecCCCCccccCccccCCCCCCEEEccCCccc
Q 048551 29 NETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWTGVTCA---SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFS 105 (409)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~~~g~~c~---~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 105 (409)
.++|+.+|+.||+++.+|...+.+|....++|.|.|++|+ +++.|++++|++++.++..+..+++|++|+|++|+++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~ 106 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLS 106 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccC
Confidence 3489999999999998887778899888899999999996 6899999999999999999999999999999999999
Q ss_pred ccCCcccc-CCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCC
Q 048551 106 GTIPTNLS-LRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESP 184 (409)
Q Consensus 106 ~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~ 184 (409)
+.+|..+. .+++|++|++++|.+++.+|. +.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+
T Consensus 107 ~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 107 GPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred CcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence 88887754 899999999999999877774 457888888888888888888888888888888888888888888888
Q ss_pred CCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCC
Q 048551 185 GQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRE 263 (409)
Q Consensus 185 ~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (409)
.++++|++|++++|.+.+..+ .+.++++|+.|++++|.+++.+|..+. .+++|++|++++|.+++.+|..++++++|+
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 888888888888888887766 778888888888888888888888877 788888888888888888888888888888
Q ss_pred EEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCChhccCCCCCCccc-------------cCCCCCCCE
Q 048551 264 RLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-------------TDSLKSIEE 329 (409)
Q Consensus 264 ~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-------------~~~l~~L~~ 329 (409)
.|++++|++.+.....+. +.++ +.|++++|.+. +.+|..+..+++|+.|+ +..+++|+.
T Consensus 264 ~L~L~~n~l~~~~p~~l~~l~~L-~~L~Ls~n~l~------~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 264 YLFLYQNKLSGPIPPSIFSLQKL-ISLDLSDNSLS------GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred EEECcCCeeeccCchhHhhccCc-CEEECcCCeec------cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 888888888765433333 4455 77778777777 45555555555555554 233455555
Q ss_pred EECcCCccccccchhhhcCCCCcEEEe-eccceecCCC
Q 048551 330 LDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPT 366 (409)
Q Consensus 330 L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~ 366 (409)
|++++|++++.+|..+..+++|+.|++ +|++.+.+|.
T Consensus 337 L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred EECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 555555555555555555555555555 5555544443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.7e-37 Score=329.46 Aligned_cols=319 Identities=31% Similarity=0.472 Sum_probs=181.6
Q ss_pred ecCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEE
Q 048551 66 TCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKL 145 (409)
Q Consensus 66 ~c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 145 (409)
.+.+|++|++++|++++.+|. +.+++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|..++++++|++|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 344677777777777666653 345666666666666666666666666666666666666666666666666666666
Q ss_pred EeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCc
Q 048551 146 SFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLN 224 (409)
Q Consensus 146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~ 224 (409)
++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+..+ .+.++++|+.|++++|.++
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 666666666666666666666666666666666666666666666666666666665555 5566666666666666666
Q ss_pred ccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCcccccc--
Q 048551 225 GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQ-- 301 (409)
Q Consensus 225 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~-- 301 (409)
+.+|..+. .+++|++|++++|.+.+.+|..+.++++|+.|++++|.+++.....+. ++++ +.|++++|.+.+..+
T Consensus 274 ~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L-~~L~L~~n~l~~~~p~~ 351 (968)
T PLN00113 274 GPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRL-QVLQLWSNKFSGEIPKN 351 (968)
T ss_pred ccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCC-CEEECcCCCCcCcCChH
Confidence 55665555 556666666666666655565555666666666666655544322222 2333 444444444442000
Q ss_pred -----cc-----------ccCChhccCCCCCCccc-------------cCCCCCCCEEECcCCccccccchhhhcCCCCc
Q 048551 302 -----NI-----------CYLPTGISNLVNLDSLA-------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLV 352 (409)
Q Consensus 302 -----~l-----------~~ip~~~~~l~~L~~L~-------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 352 (409)
.+ +.+|..+..+++|+.++ +..+++|+.|++++|++++.+|..+..++.|+
T Consensus 352 l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 431 (968)
T PLN00113 352 LGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVY 431 (968)
T ss_pred HhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCC
Confidence 00 23444444444444443 22344555555555555555555555555555
Q ss_pred EEEe-eccceecCCCC-CCCCCCCeecccCCCCceecCC
Q 048551 353 LLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCGGFD 389 (409)
Q Consensus 353 ~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g~~p 389 (409)
.|++ +|++.+.+|.. ..+++|+.|++++| .+.|.+|
T Consensus 432 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~p 469 (968)
T PLN00113 432 FLDISNNNLQGRINSRKWDMPSLQMLSLARN-KFFGGLP 469 (968)
T ss_pred EEECcCCcccCccChhhccCCCCcEEECcCc-eeeeecC
Confidence 5555 55555544433 34455555555555 3444444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=2.9e-32 Score=257.45 Aligned_cols=305 Identities=24% Similarity=0.259 Sum_probs=161.7
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCC-cccCCCCCCcEEEe
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIP-AEIGNLFKLEKLSF 147 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~L 147 (409)
+++.+.+.+|.++ .+|.......+|++|+|.+|.|+..-.++++.++.|++|||+.|.|+ .+| ..|..-.++++|+|
T Consensus 103 nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 103 NLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred cceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEee
Confidence 5666666666666 66655555555666666666666544555555555555555555555 232 23444445555555
Q ss_pred ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEE------------------------ccCCcCccc
Q 048551 148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLN------------------------VGGNQFSGM 203 (409)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~------------------------l~~n~l~~~ 203 (409)
++|.|+..-...|.++.+|..|.++.|+++...+..|.++++|+.|+ +..|.+...
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence 55555544444455555555555555555533333444444444444 444444444
Q ss_pred Cc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-
Q 048551 204 FL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA- 281 (409)
Q Consensus 204 ~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~- 281 (409)
.. .|..+.++++|+++.|+++..-..+++ +++.|+.|++++|.|..+-++.+.-+++|++|+|++|+++..+...+.
T Consensus 261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~ 339 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV 339 (873)
T ss_pred cCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH
Confidence 44 455556666666666666533334455 566666666666666666666666666666666666666665544444
Q ss_pred hcccCcEEecccCCccccccccccCCh-hccCCCCCCccc----------------cCCCCCCCEEECcCCccccccchh
Q 048551 282 ATSYSQRLNDDDQNHHGRQQNICYLPT-GISNLVNLDSLA----------------TDSLKSIEELDLSSNNLSGQLPRL 344 (409)
Q Consensus 282 l~~l~~~L~l~~n~l~~~~~~l~~ip~-~~~~l~~L~~L~----------------~~~l~~L~~L~Ls~N~l~~~~p~~ 344 (409)
+..+ ++|+|+.|++. .+.. .+..+++|++|| |.++++|+.|++.+|+|..+.-..
T Consensus 340 L~~L-e~LnLs~Nsi~-------~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krA 411 (873)
T KOG4194|consen 340 LSQL-EELNLSHNSID-------HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRA 411 (873)
T ss_pred HHHh-hhhcccccchH-------HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhh
Confidence 3333 66666666655 3322 333444444444 444555555555555555333345
Q ss_pred hhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCce
Q 048551 345 LVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLC 385 (409)
Q Consensus 345 ~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~ 385 (409)
|..+..|+.||| +|-+...-|.. ..+ .|++|-+..-..+|
T Consensus 412 fsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 412 FSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLC 453 (873)
T ss_pred hccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEE
Confidence 555555555555 44444433332 223 44444443332444
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=7.6e-32 Score=254.59 Aligned_cols=305 Identities=19% Similarity=0.216 Sum_probs=241.9
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
..+.||+++|.+...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 5678999999999888888999999999999999999 788766667779999999999997667778899999999999
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccC
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNL 227 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~ 227 (409)
.|.++..--.+|..-.++++|++++|+|+..-...|..+.+|..|.++.|+++..++ .|.++++|+.|++..|++. .+
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-iv 236 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IV 236 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-ee
Confidence 999985444567777899999999999998888889999999999999999999887 7778999999999888876 32
Q ss_pred chHHhh------------------------CCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccc--hhhh
Q 048551 228 PPVIGA------------------------KLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSI--WRSA 281 (409)
Q Consensus 228 p~~~~~------------------------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~ 281 (409)
...-|+ .+.++++|+|+.|+++..-..++-+++.|+.|++|+|.|..+.. |.|.
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 111122 45556666666666665555566677777777777777776653 3333
Q ss_pred hcccCcEEecccCCccccccccccCCh-hccCCCCCCccc-------------cCCCCCCCEEECcCCccccccch---h
Q 048551 282 ATSYSQRLNDDDQNHHGRQQNICYLPT-GISNLVNLDSLA-------------TDSLKSIEELDLSSNNLSGQLPR---L 344 (409)
Q Consensus 282 l~~l~~~L~l~~n~l~~~~~~l~~ip~-~~~~l~~L~~L~-------------~~~l~~L~~L~Ls~N~l~~~~p~---~ 344 (409)
.++ ++|+|+.|+++ ++++ .+..+..|++|. |.++.+|+.|||++|.|+..+.+ .
T Consensus 317 -qkL-~~LdLs~N~i~-------~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 317 -QKL-KELDLSSNRIT-------RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred -ccc-eeEeccccccc-------cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 223 88888888887 5554 566667777776 77899999999999999866543 5
Q ss_pred hhcCCCCcEEEe-eccceecCCCC--CCCCCCCeecccCCCCce
Q 048551 345 LVNLSFLVLLNL-YNHFDGEVPTK--GVFNNKTRISLAGNGKLC 385 (409)
Q Consensus 345 ~~~l~~L~~L~L-~n~l~~~~p~~--~~~~~L~~L~l~~Np~l~ 385 (409)
|..+++|+.|++ +|++. .||.. ..++.|+.|+|.+|+.-+
T Consensus 388 f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred hccchhhhheeecCceee-ecchhhhccCcccceecCCCCccee
Confidence 778999999999 77765 55554 789999999999996444
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=5.9e-31 Score=250.35 Aligned_cols=301 Identities=23% Similarity=0.338 Sum_probs=203.4
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccc-cCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSG-TIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
++++|++++|++. .+-..++.++.|+.++++.|++.. -+|..+..+..|..||+++|+++ ..|..+..-+++-+|+|
T Consensus 56 kLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred hhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEc
Confidence 4455555555554 344444555555555555555532 24555555555555555555555 55555555555555555
Q ss_pred ecccccccCCc-cccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCc-
Q 048551 148 CVIKLTGQLPA-SIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLN- 224 (409)
Q Consensus 148 ~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~- 224 (409)
++|+|. .+|. -|.+++.|-.||+++|++. .+|..+..+..|++|++++|.+..... .+-.+++|+.|.+++.+-+
T Consensus 134 S~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 134 SYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred ccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 555555 3332 3345555555555555554 444455555555666666655543322 3334455555566554322
Q ss_pred ccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccc
Q 048551 225 GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNIC 304 (409)
Q Consensus 225 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~ 304 (409)
..+|..+- .+.+|..+|++.|.+. ..|+.+-++++|+.|+||+|+|+......-...++ ++|+++.|.++
T Consensus 212 ~N~Ptsld-~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~l-EtLNlSrNQLt------- 281 (1255)
T KOG0444|consen 212 DNIPTSLD-DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENL-ETLNLSRNQLT------- 281 (1255)
T ss_pred hcCCCchh-hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhh-hhhccccchhc-------
Confidence 35788886 7899999999999998 88999999999999999999998765222112223 89999999998
Q ss_pred cCChhccCCCCCCccc--------------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-C
Q 048551 305 YLPTGISNLVNLDSLA--------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-G 368 (409)
Q Consensus 305 ~ip~~~~~l~~L~~L~--------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~ 368 (409)
.+|..++.+++|+.|. ++.+.+|+.+..++|++. .+|..++.+..|+.|.| .|.++ .+|.. .
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH 359 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH 359 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhh
Confidence 8999999998888877 556678999999999998 89999999999999999 67776 45655 7
Q ss_pred CCCCCCeecccCCCCce
Q 048551 369 VFNNKTRISLAGNGKLC 385 (409)
Q Consensus 369 ~~~~L~~L~l~~Np~l~ 385 (409)
-++.|+.||+..||.+-
T Consensus 360 lL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 360 LLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hcCCcceeeccCCcCcc
Confidence 88999999999999885
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=2.6e-30 Score=246.03 Aligned_cols=311 Identities=22% Similarity=0.288 Sum_probs=169.6
Q ss_pred CcEEEecCCCCc-cccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 70 LRFINIADNGVQ-GEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 70 l~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
++-+|+++|.++ +.+|.....|++++-|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+++.
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhh
Confidence 344555555555 345555555555555555555555 45555555555555555555555 344444555555555555
Q ss_pred cccccc-cCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCccc
Q 048551 149 VIKLTG-QLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGN 226 (409)
Q Consensus 149 ~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~ 226 (409)
.|++.. -+|..+..+..|+.||+++|++. ..|..+..-+++-.|++++|++..++. -+.+++.|-.||+++|++. .
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~ 164 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-M 164 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-h
Confidence 555532 24555555555555555555555 445555555555555555555555443 3445555555555555555 5
Q ss_pred CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh--hcccCcEEecccCCccccccccc
Q 048551 227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA--ATSYSQRLNDDDQNHHGRQQNIC 304 (409)
Q Consensus 227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--l~~l~~~L~l~~n~l~~~~~~l~ 304 (409)
+|+.+. .+..|++|+|++|.+....-..+..+++|++|.+++.+-+-.-+.... +.++ ..+|++.|.+.
T Consensus 165 LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL-~dvDlS~N~Lp------- 235 (1255)
T KOG0444|consen 165 LPPQIR-RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNL-RDVDLSENNLP------- 235 (1255)
T ss_pred cCHHHH-HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhh-hhccccccCCC-------
Confidence 555554 455555555555554322222233344444444444333221111111 2222 44444544444
Q ss_pred cCChhccCCCCCCcccc------------CCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccce-ecCCCC-CC
Q 048551 305 YLPTGISNLVNLDSLAT------------DSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFD-GEVPTK-GV 369 (409)
Q Consensus 305 ~ip~~~~~l~~L~~L~~------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~-~~~p~~-~~ 369 (409)
.+|..+..+.+|..|++ +...+|++|++|.|+++ .+|++++.++.|+.|++ +|+++ .-+|++ +.
T Consensus 236 ~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence 44444444444444442 23467788888888888 78888888888888888 66664 446666 77
Q ss_pred CCCCCeecccCCCCceecCCCCCCCCCC
Q 048551 370 FNNKTRISLAGNGKLCGGFDGLHSPSCH 397 (409)
Q Consensus 370 ~~~L~~L~l~~Np~l~g~~p~~~~~~~~ 397 (409)
+.+|..+..++| .+. -+|+ ++-.|.
T Consensus 315 L~~Levf~aanN-~LE-lVPE-glcRC~ 339 (1255)
T KOG0444|consen 315 LIQLEVFHAANN-KLE-LVPE-GLCRCV 339 (1255)
T ss_pred hhhhHHHHhhcc-ccc-cCch-hhhhhH
Confidence 777777777777 444 5666 444443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=3.6e-30 Score=233.67 Aligned_cols=307 Identities=26% Similarity=0.345 Sum_probs=203.8
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
.++++++.+|++. ..|++++.+..++.++.++|++. ++|+.+..+..|+.+++++|++. .+|+.++.+-.++.++..
T Consensus 69 ~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence 3556666666666 55666666666666666666665 56666666666666666666665 555555555555555555
Q ss_pred cccccccCCccccC-----------------------CCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc
Q 048551 149 VIKLTGQLPASIQN-----------------------LSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL 205 (409)
Q Consensus 149 ~n~l~~~~p~~l~~-----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 205 (409)
+|++. ..|+.+.+ ++.|+++|...|.+. .+|..++.+.+|+-|++..|.+...+
T Consensus 146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP- 222 (565)
T KOG0472|consen 146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLP- 222 (565)
T ss_pred ccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCC-
Confidence 55555 34444444 444555555555544 56667777777777777777776654
Q ss_pred ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccc--hhhhhc
Q 048551 206 PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSI--WRSAAT 283 (409)
Q Consensus 206 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~l~ 283 (409)
.|..+..|.+++++.|.+. .+|...+.+++++..||+..|+++ ..|+.+.-+++|++||+|+|.+++.+. +...+.
T Consensus 223 ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~ 300 (565)
T KOG0472|consen 223 EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLK 300 (565)
T ss_pred CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccceee
Confidence 6777777888888888877 788888778999999999999999 789999999999999999999998762 221111
Q ss_pred ccC-----------------------------------------------------------------------------
Q 048551 284 SYS----------------------------------------------------------------------------- 286 (409)
Q Consensus 284 ~l~----------------------------------------------------------------------------- 286 (409)
.+.
T Consensus 301 ~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdE 380 (565)
T KOG0472|consen 301 FLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDE 380 (565)
T ss_pred ehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHH
Confidence 000
Q ss_pred ----------cEEecccCCccc-----------------cccccccCChhccCCCCCCccc------------cCCCCCC
Q 048551 287 ----------QRLNDDDQNHHG-----------------RQQNICYLPTGISNLVNLDSLA------------TDSLKSI 327 (409)
Q Consensus 287 ----------~~L~l~~n~l~~-----------------~~~~l~~ip~~~~~l~~L~~L~------------~~~l~~L 327 (409)
..++++.|.+.- ....++.+|..++.+++|+.|+ ++.+..|
T Consensus 381 Vfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~L 460 (565)
T KOG0472|consen 381 VFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRL 460 (565)
T ss_pred HHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhh
Confidence 234444444331 1111245555666666666666 3445667
Q ss_pred CEEECcCCccccccc------------------------hhhhcCCCCcEEEeeccceecCCCC-CCCCCCCeecccCCC
Q 048551 328 EELDLSSNNLSGQLP------------------------RLLVNLSFLVLLNLYNHFDGEVPTK-GVFNNKTRISLAGNG 382 (409)
Q Consensus 328 ~~L~Ls~N~l~~~~p------------------------~~~~~l~~L~~L~L~n~l~~~~p~~-~~~~~L~~L~l~~Np 382 (409)
+.||+|+|++. .+| +.+.+|.+|.+|||+||-...+|.. +.+.+|++|++.|||
T Consensus 461 q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 461 QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence 88888877665 333 3467788999999944444456655 999999999999997
Q ss_pred Cc
Q 048551 383 KL 384 (409)
Q Consensus 383 ~l 384 (409)
+-
T Consensus 540 fr 541 (565)
T KOG0472|consen 540 FR 541 (565)
T ss_pred cC
Confidence 43
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=3.4e-28 Score=220.86 Aligned_cols=264 Identities=27% Similarity=0.382 Sum_probs=225.9
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
.++.+.+++|.++ .+.+.+.++..+.+|++.+|++. ..|.+++.+..++.++.++|++. .+|+.++.+..+..++++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 5788999999999 67778999999999999999999 78989999999999999999999 899999999999999999
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP 228 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p 228 (409)
+|.+. .+|++++.+..++.++..+|+++ ..|..+..+.++..+++.+|.+...++..-+++.|+++|...|.+. .+|
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCC
Confidence 99998 88899999999999999999998 7788888999999999999999998885555999999999999997 999
Q ss_pred hHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCCh
Q 048551 229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPT 308 (409)
Q Consensus 229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~ 308 (409)
+.++ .+.+|+.|++..|++. ..| .|.+|..|++|+++.|++. .+|+
T Consensus 200 ~~lg-~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-------------------------------~lpa 245 (565)
T KOG0472|consen 200 PELG-GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-------------------------------MLPA 245 (565)
T ss_pred hhhc-chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-------------------------------hhHH
Confidence 9998 8999999999999998 677 7899999999999999986 4565
Q ss_pred hccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCCeecccCCCCc
Q 048551 309 GISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGNGKL 384 (409)
Q Consensus 309 ~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~~L~l~~Np~l 384 (409)
..+ .+++++..||+.+|+++ ..|+.++-+++|.+||+ +|.+++..++-+.+ .|+.|.+.|||.-
T Consensus 246 e~~----------~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 246 EHL----------KHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred HHh----------cccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence 553 23467788888888888 77888888888888888 44444433333666 7778888888743
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=8e-22 Score=214.26 Aligned_cols=277 Identities=21% Similarity=0.219 Sum_probs=140.2
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeC
Q 048551 92 VRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADS 171 (409)
Q Consensus 92 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 171 (409)
.+|+.|++++|++. .++..+..+++|++|+++++.....+|. ++.+++|++|++++|.....+|..+..+++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 44555555555444 3444444455555555554432223332 444455555555554433344555555555555555
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccccc---
Q 048551 172 NRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF--- 248 (409)
Q Consensus 172 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l--- 248 (409)
++|..-+.+|..+ ++++|++|++++|......+. ...+|+.|++++|.+. .+|..+ .+++|++|.+.++..
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCccc-cccccc--cccccccccccccchhhc
Confidence 5543333444333 344555555554433222221 1234455555555544 444332 233333333332110
Q ss_pred ----ccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCChhccCCCCCCccccCC
Q 048551 249 ----TGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDS 323 (409)
Q Consensus 249 ----~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~ 323 (409)
....+......++|+.|++++|...+.....+. +.++ +.|++++|... +.+|..+ .+++|+.|++++
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L-~~L~Ls~C~~L------~~LP~~~-~L~sL~~L~Ls~ 834 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL-EHLEIENCINL------ETLPTGI-NLESLESLDLSG 834 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC-CEEECCCCCCc------CeeCCCC-CccccCEEECCC
Confidence 000011111223455555555443322211122 3333 55555554322 3455444 455566666444
Q ss_pred C----------CCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCce
Q 048551 324 L----------KSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLC 385 (409)
Q Consensus 324 l----------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~ 385 (409)
+ ++|+.|+|++|.|+ .+|.++..+++|++|++ +++....+|.. ..+++|+.+++++|+.+.
T Consensus 835 c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 835 CSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 2 46788999999998 78999999999999999 75555556654 778899999999987775
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.89 E-value=5.8e-22 Score=202.89 Aligned_cols=224 Identities=24% Similarity=0.349 Sum_probs=124.3
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCCCC----CCCCCCCCCCcee----------------eecC-----------------
Q 048551 26 INANETDRLALLAIKSQLHDPLEVTS----SLTNSVNLCEWTG----------------VTCA----------------- 68 (409)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~----~w~~~~~~c~~~g----------------~~c~----------------- 68 (409)
+....++...++++.+.+..|. +.. .|+...++|.-.. |.|.
T Consensus 58 ~~~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~g~~~~~~ 136 (754)
T PRK15370 58 ETASPEEIKSKFECLRMLAFPA-YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVTESEQASS 136 (754)
T ss_pred CCCCHHHHHHHHHHHHHhcCCc-hhhccccccCCCCcccccCCcchhhheeeecCCceEEecCCCccccccccccccccc
Confidence 3456789999999999986665 333 4888888995443 4553
Q ss_pred ------------------------------------------CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccc
Q 048551 69 ------------------------------------------SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSG 106 (409)
Q Consensus 69 ------------------------------------------~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 106 (409)
+.+.|++++++++ .+|..+. +.|+.|++++|+++
T Consensus 137 ~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt- 212 (754)
T PRK15370 137 ASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK- 212 (754)
T ss_pred CCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-
Confidence 3445666665555 4454432 35666666666665
Q ss_pred cCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCC
Q 048551 107 TIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQ 186 (409)
Q Consensus 107 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 186 (409)
.+|..+. ++|++|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+.
T Consensus 213 sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~- 282 (754)
T PRK15370 213 SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP- 282 (754)
T ss_pred cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC-
Confidence 3444332 35666666666655 3444332 34566666666655 4454443 35566666666655 3444332
Q ss_pred CCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEE
Q 048551 187 LRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLE 266 (409)
Q Consensus 187 l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 266 (409)
++|+.|++++|.+++.+..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.+++ +|..+. ++|+.|+
T Consensus 283 -~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~ 352 (754)
T PRK15370 283 -EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLT-ALPETLP---PGLKTLEAGENALTS-LPASLP--PELQVLD 352 (754)
T ss_pred -CCCcEEECCCCccccCcccch--hhHHHHHhcCCccc-cCCcccc---ccceeccccCCcccc-CChhhc--CcccEEE
Confidence 356666666666555432221 34555666666655 4444332 455666666666553 444332 4566666
Q ss_pred cccCcCcc
Q 048551 267 LSYNQFRG 274 (409)
Q Consensus 267 Ls~N~l~~ 274 (409)
+++|+++.
T Consensus 353 Ls~N~L~~ 360 (754)
T PRK15370 353 VSKNQITV 360 (754)
T ss_pred CCCCCCCc
Confidence 66665553
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=6.2e-22 Score=201.69 Aligned_cols=259 Identities=24% Similarity=0.310 Sum_probs=176.6
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
.-..|++++++++ .+|..+. ++|+.|++.+|+++ .+|. ..++|++|++++|+++ .+|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 4567889999888 7787765 47899999999888 4664 3578899999999888 56643 3578888888
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP 228 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p 228 (409)
+|.++ .+|..+ ++|+.|++++|+++ .+|.. .++|++|++++|.+++++.. ..+|+.|++++|.++ .+|
T Consensus 271 ~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~-~LP 338 (788)
T PRK15387 271 SNPLT-HLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLT-SLP 338 (788)
T ss_pred CCchh-hhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCccccCCCC---cccccccccccCccc-ccc
Confidence 88887 455432 46778888888887 44542 46788888888888875432 235777888888887 566
Q ss_pred hHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCCh
Q 048551 229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPT 308 (409)
Q Consensus 229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~ 308 (409)
.. ..+|+.|++++|+++ .+|.. .++|+.|++++|++++.+.. ..++ +.|++++|.++ .+|.
T Consensus 339 ~l----p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L-~~LdLs~N~Lt-------~LP~ 399 (788)
T PRK15387 339 TL----PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL---PSGL-KELIVSGNRLT-------SLPV 399 (788)
T ss_pred cc----ccccceEecCCCccC-CCCCC---CcccceehhhccccccCccc---cccc-ceEEecCCccc-------CCCC
Confidence 42 246888888888887 34542 34677788888888765421 1223 77888888776 4553
Q ss_pred hccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCcee
Q 048551 309 GISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCG 386 (409)
Q Consensus 309 ~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g 386 (409)
.. ++|+.|++++|+|+ .+|... .+|+.|++ +|+++ .+|.. ..+++|+.|++++|| ++|
T Consensus 400 l~--------------s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~-Ls~ 459 (788)
T PRK15387 400 LP--------------SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP-LSE 459 (788)
T ss_pred cc--------------cCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC-CCc
Confidence 21 35677777777777 355432 35666777 55554 55654 556777777777773 555
Q ss_pred cCC
Q 048551 387 GFD 389 (409)
Q Consensus 387 ~~p 389 (409)
.+|
T Consensus 460 ~~~ 462 (788)
T PRK15387 460 RTL 462 (788)
T ss_pred hHH
Confidence 544
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=1.8e-24 Score=214.78 Aligned_cols=299 Identities=24% Similarity=0.317 Sum_probs=180.1
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
|-+++.||+++|++. .+|..+..+.+|+.|+++.|.|. ..|.+..++.+|+++.|.+|.+. ..|..+..+.+|++|+
T Consensus 44 ~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLD 120 (1081)
T ss_pred eeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccc
Confidence 336888999999888 88888888888899999888888 67777888888888888888887 7888888888888888
Q ss_pred eecccccccCCccccCCCCCcE-----------------------------------------EeCCCCCCCCCCCCCCC
Q 048551 147 FCVIKLTGQLPASIQNLSSHLE-----------------------------------------ADSNRNNFGGKIPESPG 185 (409)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~-----------------------------------------L~l~~n~l~~~~~~~~~ 185 (409)
+++|.+. .+|..+..++.+++ +++.+|.+... .+.
T Consensus 121 lS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~---dls 196 (1081)
T KOG0618|consen 121 LSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL---DLS 196 (1081)
T ss_pred cchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhh---hhh
Confidence 8888876 45544333222222 33333333200 001
Q ss_pred CC------------------------------------------CCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcC
Q 048551 186 QL------------------------------------------RSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRL 223 (409)
Q Consensus 186 ~l------------------------------------------~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l 223 (409)
.+ .+|++++++.|++++.+..+..+.+|+.+++.+|++
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH
Confidence 11 123333444444443333344444444444444444
Q ss_pred cccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh---------------hc-----
Q 048551 224 NGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA---------------AT----- 283 (409)
Q Consensus 224 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~---------------l~----- 283 (409)
+ .+|..++ ...+|+.|++.+|.+. .+|......++|++|+|..|++...+...+. ++
T Consensus 277 ~-~lp~ri~-~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~ 353 (1081)
T KOG0618|consen 277 V-ALPLRIS-RITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY 353 (1081)
T ss_pred H-hhHHHHh-hhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence 3 4444444 4444555555555554 4555666788899999999998876521110 00
Q ss_pred ------ccCcEEecccCCccccccccccCChhccCCCCCCccc-------------cCCCCCCCEEECcCCccccccchh
Q 048551 284 ------SYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-------------TDSLKSIEELDLSSNNLSGQLPRL 344 (409)
Q Consensus 284 ------~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-------------~~~l~~L~~L~Ls~N~l~~~~p~~ 344 (409)
.+ +.|++.+|.++ ...-+.+.++.+|+.|+ +.+++.|+.|+||+|+++ .+|..
T Consensus 354 ~e~~~~~L-q~LylanN~Lt------d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 354 EENNHAAL-QELYLANNHLT------DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred cchhhHHH-HHHHHhcCccc------ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence 01 55566666665 44444555666666666 445667777777777777 55555
Q ss_pred hhc----------------------CCCCcEEEe-eccceec-CCCCCCCCCCCeecccCCCC
Q 048551 345 LVN----------------------LSFLVLLNL-YNHFDGE-VPTKGVFNNKTRISLAGNGK 383 (409)
Q Consensus 345 ~~~----------------------l~~L~~L~L-~n~l~~~-~p~~~~~~~L~~L~l~~Np~ 383 (409)
+.. ++.|+.+|+ .|++... +|....-++|++||++||++
T Consensus 426 va~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHhhhhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 444 555666666 5555432 22221125666666666654
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=2.7e-21 Score=196.99 Aligned_cols=240 Identities=25% Similarity=0.289 Sum_probs=192.1
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
+++.|++.+|+++ .+|.. .++|++|++++|+++ .+|.. .++|+.|++++|.++ .+|..+ .+|+.|+++
T Consensus 223 ~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~Ls 290 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLWIF 290 (788)
T ss_pred CCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhch---hhcCEEECc
Confidence 7899999999999 67753 578999999999999 55643 478999999999998 566533 578899999
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP 228 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p 228 (409)
+|+++ .+|.. .++|+.|++++|.+++ +|... .+|+.|++++|.+++++. + ..+|+.|++++|+++ .+|
T Consensus 291 ~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~LP~-l--p~~Lq~LdLS~N~Ls-~LP 358 (788)
T PRK15387 291 GNQLT-SLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTSLPT-L--PSGLQELSVSDNQLA-SLP 358 (788)
T ss_pred CCccc-ccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCccccccc-c--ccccceEecCCCccC-CCC
Confidence 99998 56653 4689999999999984 55432 468889999999987543 1 257999999999999 677
Q ss_pred hHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCCh
Q 048551 229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPT 308 (409)
Q Consensus 229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~ 308 (409)
.. .++|+.|++++|+++ .+|.. ..+|+.|++++|++++.+.. ..++ +.|++++|.++ .+|.
T Consensus 359 ~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L-~~LdLS~N~Ls-------sIP~ 419 (788)
T PRK15387 359 TL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL---PSEL-KELMVSGNRLT-------SLPM 419 (788)
T ss_pred CC----Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc---ccCC-CEEEccCCcCC-------CCCc
Confidence 53 357889999999998 46653 35799999999999876521 1233 89999999988 5664
Q ss_pred hccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCC
Q 048551 309 GISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPT 366 (409)
Q Consensus 309 ~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~ 366 (409)
.. .+|+.|++++|+|+ .+|..+.++++|+.|+| +|++.+.++.
T Consensus 420 l~--------------~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 420 LP--------------SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ch--------------hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 32 35688999999999 78999999999999999 9999887655
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=5.2e-23 Score=204.41 Aligned_cols=275 Identities=24% Similarity=0.254 Sum_probs=192.4
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeC
Q 048551 92 VRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADS 171 (409)
Q Consensus 92 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 171 (409)
++|+.|+.+.|.++...+. ..-.+|+++++++|+++ .+|++++.+.+|+.++..+|.++ .+|..+...++|+.|++
T Consensus 219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence 3444555555555421111 12356777777777777 56677777777777777777775 67777777777777777
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCC-CCcEEEeecCcCcccCchHHhhCCCccceeeccccccc
Q 048551 172 NRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLS-SLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFT 249 (409)
Q Consensus 172 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 249 (409)
.+|++. .+|....+++.|++|++..|.+...++ .+.... .++.++.+.|.+. ..|..=...++.|+.|.+.+|.++
T Consensus 295 ~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 295 AYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCccc
Confidence 777776 566666777777788887777777665 333332 3666677777666 444322224567999999999999
Q ss_pred cccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCChhccCCCCCCccc--------
Q 048551 250 GPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-------- 320 (409)
Q Consensus 250 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-------- 320 (409)
+..-..+.++.+|+.|+|++|++..++...+. +..+ ++|+|++|+++ .+|..+..++.|++|.
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L-eeL~LSGNkL~-------~Lp~tva~~~~L~tL~ahsN~l~~ 444 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL-EELNLSGNKLT-------TLPDTVANLGRLHTLRAHSNQLLS 444 (1081)
T ss_pred ccchhhhccccceeeeeecccccccCCHHHHhchHHh-HHHhcccchhh-------hhhHHHHhhhhhHHHhhcCCceee
Confidence 87777889999999999999999887754444 4455 99999999998 8999999999888887
Q ss_pred ---cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC--CCCCCCCeecccCC
Q 048551 321 ---TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK--GVFNNKTRISLAGN 381 (409)
Q Consensus 321 ---~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~--~~~~~L~~L~l~~N 381 (409)
+..++.|+.+|+|.|+++...-......++|++||+ +|.-. .+... ..+..+...++.-|
T Consensus 445 fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 445 FPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL-VFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred chhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc-ccchhhhHHhhhhhheecccC
Confidence 678899999999999998543333333489999999 66532 22221 23444444555544
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=2.2e-19 Score=195.37 Aligned_cols=262 Identities=21% Similarity=0.206 Sum_probs=180.2
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
..+|+.|+++++.+. .++..+..+++|+.|+|+++.....+|. ++.+++|+.|++++|.....+|..++.+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 348999999999998 7888889999999999998865556774 88899999999999876668999999999999999
Q ss_pred eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCC----------------
Q 048551 147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNL---------------- 210 (409)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l---------------- 210 (409)
+++|.....+|..+ ++++|+.|++++|...+.+|.. ..+|++|++++|.+...+..+ .+
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhc
Confidence 99976555778765 7889999999998765555543 357888888888876543321 22
Q ss_pred ---------------CCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccc
Q 048551 211 ---------------SSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGK 275 (409)
Q Consensus 211 ---------------~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 275 (409)
++|+.|++++|...+.+|..+. .+++|+.|++++|..-+.+|..+ ++++|+.|++++|..-..
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence 3556666666655556666665 66666666666654333455444 566666666666532211
Q ss_pred cchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcC-CccccccchhhhcCCCCcEE
Q 048551 276 SIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSS-NNLSGQLPRLLVNLSFLVLL 354 (409)
Q Consensus 276 ~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L 354 (409)
.... ..++ +.|++++|.+. .+|.++..+ ++|+.|++++ |+++ .+|..+..++.|+.+
T Consensus 841 ~p~~--~~nL-~~L~Ls~n~i~-------~iP~si~~l-----------~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 841 FPDI--STNI-SDLNLSRTGIE-------EVPWWIEKF-----------SNLSFLDMNGCNNLQ-RVSLNISKLKHLETV 898 (1153)
T ss_pred cccc--cccc-CEeECCCCCCc-------cChHHHhcC-----------CCCCEEECCCCCCcC-ccCcccccccCCCee
Confidence 1000 1122 67777777766 677666554 5556666666 4444 455566677777777
Q ss_pred Ee-ecc
Q 048551 355 NL-YNH 359 (409)
Q Consensus 355 ~L-~n~ 359 (409)
++ ++.
T Consensus 899 ~l~~C~ 904 (1153)
T PLN03210 899 DFSDCG 904 (1153)
T ss_pred ecCCCc
Confidence 77 554
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=4.1e-22 Score=181.17 Aligned_cols=273 Identities=19% Similarity=0.176 Sum_probs=172.3
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCC-CcCCccCCcccCCCCCCcEEEe
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANR-NILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~L 147 (409)
..+.++|..|+|+...|.+|+.+++||.|||++|.|+.+-|++|.+++.|..|-+.+ |+|+..-...|+++..++-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567899999999966667899999999999999999988889999998887776654 8998444456888999999999
Q ss_pred ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc------------Cc-ccCCCCCCc
Q 048551 148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGM------------FL-PVYNLSSLE 214 (409)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------~~-~~~~l~~L~ 214 (409)
.-|.+.-...+.|..++++..|.+.+|.+...-...|..+.+++.+.+..|.+... .+ .++...-..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 98988877777888999999999999988744444788888888888887763211 11 222222222
Q ss_pred EEEeecCcCcccCch-HHhhCCCccceeeccccccccccc-hhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEec
Q 048551 215 MIYLHDNRLNGNLPP-VIGAKLPNLRKIVIALNNFTGPLP-DSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLND 291 (409)
Q Consensus 215 ~L~l~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l 291 (409)
-..+.+.++. .++. .+......+.+--.+.+...++.| ..|..+++|+.|+|++|+++++.-..|. +.++ ++|.|
T Consensus 228 p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l-~eL~L 305 (498)
T KOG4237|consen 228 PYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL-QELYL 305 (498)
T ss_pred hHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh-hhhhc
Confidence 2233333333 2221 111111111111111222222333 3467777777777777777655433333 2223 44444
Q ss_pred ccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccc
Q 048551 292 DDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHF 360 (409)
Q Consensus 292 ~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l 360 (409)
..|.+. .+.... |.++..|+.|+|.+|+|+...|..|..+.+|.+|+| .|.+
T Consensus 306 ~~N~l~-------~v~~~~----------f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 306 TRNKLE-------FVSSGM----------FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CcchHH-------HHHHHh----------hhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 444433 222211 445566677777777777666667777777777776 6654
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1e-19 Score=186.47 Aligned_cols=230 Identities=18% Similarity=0.291 Sum_probs=179.1
Q ss_pred CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
.+++.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. ..|+.|++++|.++ .+|..+. .+|++|++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 47999999999999 7777664 58999999999998 5676553 57999999999999 7887664 58999999
Q ss_pred ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccC
Q 048551 148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNL 227 (409)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~ 227 (409)
++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++..+..+ .++|+.|++++|.++ .+
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt-~L 340 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALT-SL 340 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCccc--cccceeccccCCccc-cC
Confidence 999998 6787664 58999999999998 4565443 57999999999999765433 268999999999998 68
Q ss_pred chHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCC
Q 048551 228 PPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLP 307 (409)
Q Consensus 228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip 307 (409)
|..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|+++..+.... ..+ +.|++++|.+. .+|
T Consensus 341 P~~l~---~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL-~~LdLs~N~L~-------~LP 404 (754)
T PRK15370 341 PASLP---PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP--AAL-QIMQASRNNLV-------RLP 404 (754)
T ss_pred Chhhc---CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH--HHH-HHHhhccCCcc-------cCc
Confidence 87653 78999999999998 567655 3689999999999986542111 122 67777777776 566
Q ss_pred hhccCCCCCCccccCCCCCCCEEECcCCccc
Q 048551 308 TGISNLVNLDSLATDSLKSIEELDLSSNNLS 338 (409)
Q Consensus 308 ~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~ 338 (409)
..+..+ +..++.+..|++.+|.++
T Consensus 405 ~sl~~~-------~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 405 ESLPHF-------RGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhHHHH-------hhcCCCccEEEeeCCCcc
Confidence 554433 223466777888888776
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=1e-20 Score=178.76 Aligned_cols=275 Identities=19% Similarity=0.196 Sum_probs=164.9
Q ss_pred EEEecCCCCcc-ccCccccCCCCCCEEEccCCccccc----CCccccCCCCCcEEEcCCCcCCc------cCCcccCCCC
Q 048551 72 FINIADNGVQG-EIPNELGNLVRLEKLILANNSFSGT----IPTNLSLRSKLMLFFANRNILAG------EIPAEIGNLF 140 (409)
Q Consensus 72 ~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~------~~p~~~~~l~ 140 (409)
.|+|..+.+++ .....+..+++|+.|+++++.+++. ++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 35666666652 3444555666677778877777532 44445566677777777776652 1233455677
Q ss_pred CCcEEEeecccccccCCccccCCCC---CcEEeCCCCCCCC----CCCCCCCCC-CCCcEEEccCCcCcccC----c-cc
Q 048551 141 KLEKLSFCVIKLTGQLPASIQNLSS---HLEADSNRNNFGG----KIPESPGQL-RSLFYLNVGGNQFSGMF----L-PV 207 (409)
Q Consensus 141 ~L~~L~L~~n~l~~~~p~~l~~l~~---L~~L~l~~n~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~~----~-~~ 207 (409)
+|++|++++|.+.+..+..+..+.+ |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++.. . .+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 7777777777776544444444444 7777777777652 122233444 67777777777776321 1 34
Q ss_pred CCCCCCcEEEeecCcCccc----CchHHhhCCCccceeeccccccccc----cchhhhcCCCCCEEEcccCcCccccchh
Q 048551 208 YNLSSLEMIYLHDNRLNGN----LPPVIGAKLPNLRKIVIALNNFTGP----LPDSFSNASNRERLELSYNQFRGKSIWR 279 (409)
Q Consensus 208 ~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~~~ 279 (409)
..+.+|+.|++++|.+++. ++..+. ..++|+.|++++|.+++. ++..+..+++|++|++++|++++..+..
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLK-ANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHH-hCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 4566777888877777642 222233 445788888888777633 2334556677888888887776532111
Q ss_pred hhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCcccc----ccchhhhcCCCCcEEE
Q 048551 280 SAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSG----QLPRLLVNLSFLVLLN 355 (409)
Q Consensus 280 ~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~ 355 (409)
+. ..+ ....+.|++|++++|.+++ .+...+..+++|++++
T Consensus 241 l~--------------------------~~~----------~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 241 LA--------------------------SAL----------LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred HH--------------------------HHH----------hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEE
Confidence 11 000 0012567888888888762 2334556667788888
Q ss_pred e-eccceec----CCCC-CCC-CCCCeecccCCCC
Q 048551 356 L-YNHFDGE----VPTK-GVF-NNKTRISLAGNGK 383 (409)
Q Consensus 356 L-~n~l~~~----~p~~-~~~-~~L~~L~l~~Np~ 383 (409)
+ +|++... +... ..+ +.++.+++.+||+
T Consensus 285 l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 285 LRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 8 7777643 2222 234 6788888888864
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=6.6e-21 Score=154.88 Aligned_cols=159 Identities=25% Similarity=0.401 Sum_probs=99.0
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
++++|.|++|+++ .+|+.+..+.+|++|++++|+|+ ++|.+++.+++|+.|+++-|++. ..|..|+.++.|+.||++
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 5666667777776 56666666677777777777766 56666666666666666666666 566666666666666666
Q ss_pred cccccc-cCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccC
Q 048551 149 VIKLTG-QLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNL 227 (409)
Q Consensus 149 ~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~ 227 (409)
+|++.. .+|..|..++.|+-|++++|++. .+|..++++++|+.|.+..|.+...+..++.++.|++|++.+|+++ .+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~-vl 188 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT-VL 188 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee-ec
Confidence 666643 35555556666666666666655 5555566666666666666555554445555555555555555555 55
Q ss_pred chHHh
Q 048551 228 PPVIG 232 (409)
Q Consensus 228 p~~~~ 232 (409)
|+.++
T Consensus 189 ppel~ 193 (264)
T KOG0617|consen 189 PPELA 193 (264)
T ss_pred Chhhh
Confidence 55443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=2.2e-20 Score=151.85 Aligned_cols=181 Identities=28% Similarity=0.408 Sum_probs=156.3
Q ss_pred cccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCC
Q 048551 87 ELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSH 166 (409)
Q Consensus 87 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 166 (409)
.+..+.+++.|.|++|+++ .+|..++.+.+|++|++.+|+++ .+|..+..+++|+.|++.-|++. ..|..|+.++.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 4556788999999999999 78888999999999999999999 89999999999999999999998 899999999999
Q ss_pred cEEeCCCCCCCC-CCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccc
Q 048551 167 LEADSNRNNFGG-KIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIAL 245 (409)
Q Consensus 167 ~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~ 245 (409)
+.||+.+|++.. .+|..|-.+..|+.|.+++|.+.-.++.++++++|+.|.+.+|.+- ++|..++ .+..|++|.+.+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig-~lt~lrelhiqg 182 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIG-DLTRLRELHIQG 182 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHH-HHHHHHHHhccc
Confidence 999999999874 5788888889999999999999988889999999999999999998 8999998 899999999999
Q ss_pred cccccccchhhhcCC---CCCEEEcccCcCc
Q 048551 246 NNFTGPLPDSFSNAS---NRERLELSYNQFR 273 (409)
Q Consensus 246 n~l~~~~p~~l~~l~---~L~~L~Ls~N~l~ 273 (409)
|.++ .+|..++++. +=+.+.+.+|.+.
T Consensus 183 nrl~-vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 183 NRLT-VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred ceee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 9998 6676665542 1233444455443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=1.1e-18 Score=164.97 Aligned_cols=253 Identities=20% Similarity=0.211 Sum_probs=182.8
Q ss_pred CCcEEEecCCCCccc----cCccccCCCCCCEEEccCCcccc------cCCccccCCCCCcEEEcCCCcCCccCCcccCC
Q 048551 69 SLRFINIADNGVQGE----IPNELGNLVRLEKLILANNSFSG------TIPTNLSLRSKLMLFFANRNILAGEIPAEIGN 138 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 138 (409)
.+++++++++.+++. ++..+...+.+++++++++.+.+ .++..+..+++|+.|++++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 589999999998543 56667788889999999998862 23455677899999999999998656655555
Q ss_pred CCC---CcEEEeecccccc----cCCccccCC-CCCcEEeCCCCCCCCC----CCCCCCCCCCCcEEEccCCcCcccC--
Q 048551 139 LFK---LEKLSFCVIKLTG----QLPASIQNL-SSHLEADSNRNNFGGK----IPESPGQLRSLFYLNVGGNQFSGMF-- 204 (409)
Q Consensus 139 l~~---L~~L~L~~n~l~~----~~p~~l~~l-~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-- 204 (409)
+.. |++|++++|.+++ .+...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 554 9999999999873 233455667 8999999999999843 3345667789999999999988421
Q ss_pred ---cccCCCCCCcEEEeecCcCcccC----chHHhhCCCccceeeccccccccccchhhh-----cCCCCCEEEcccCcC
Q 048551 205 ---LPVYNLSSLEMIYLHDNRLNGNL----PPVIGAKLPNLRKIVIALNNFTGPLPDSFS-----NASNRERLELSYNQF 272 (409)
Q Consensus 205 ---~~~~~l~~L~~L~l~~n~l~~~~----p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~N~l 272 (409)
..+...++|+.|++++|.+++.- +..+. .+++|++|++++|.+++.....+. ..+.|++|++++|.+
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~-~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA-SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc-ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 13456679999999999987432 23333 678999999999999864333332 237899999999998
Q ss_pred ccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccc----cchhhhcC
Q 048551 273 RGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQ----LPRLLVNL 348 (409)
Q Consensus 273 ~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l 348 (409)
++.... .+...+ ..+++|+++++++|+++.. ....+...
T Consensus 263 ~~~~~~--------------------------~l~~~~-----------~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~ 305 (319)
T cd00116 263 TDDGAK--------------------------DLAEVL-----------AEKESLLELDLRGNKFGEEGAQLLAESLLEP 305 (319)
T ss_pred CcHHHH--------------------------HHHHHH-----------hcCCCccEEECCCCCCcHHHHHHHHHHHhhc
Confidence 743211 111111 1236778999999998854 33344444
Q ss_pred -CCCcEEEe-ecc
Q 048551 349 -SFLVLLNL-YNH 359 (409)
Q Consensus 349 -~~L~~L~L-~n~ 359 (409)
+.|+++++ +|.
T Consensus 306 ~~~~~~~~~~~~~ 318 (319)
T cd00116 306 GNELESLWVKDDS 318 (319)
T ss_pred CCchhhcccCCCC
Confidence 67888887 553
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.71 E-value=6.2e-20 Score=167.08 Aligned_cols=252 Identities=21% Similarity=0.175 Sum_probs=175.9
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccC-CcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILAN-NSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
+|++|||++|+|+..-|.+|..++.+..|-+-+ |+|+......|.++..|+.|.+.-|++.-...+.|..++++..|.+
T Consensus 92 ~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLsl 171 (498)
T KOG4237|consen 92 RLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSL 171 (498)
T ss_pred hhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcc
Confidence 899999999999988899999999988776655 9999666678999999999999999999767778999999999999
Q ss_pred ecccccccCCccccCCCCCcEEeCCCCCCC------------CCCCCCCCCCCCCcEEEccCCcCcccCc-cc-CCCCCC
Q 048551 148 CVIKLTGQLPASIQNLSSHLEADSNRNNFG------------GKIPESPGQLRSLFYLNVGGNQFSGMFL-PV-YNLSSL 213 (409)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~-~~l~~L 213 (409)
..|.+...--..|..+..++.+.+..|.+. ...|.+++...-..-..+.+.++..+.+ .+ ..+..+
T Consensus 172 yDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl 251 (498)
T KOG4237|consen 172 YDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESL 251 (498)
T ss_pred cchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhH
Confidence 999998433348889999999999888732 1233444444444444555555554443 22 122222
Q ss_pred cEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecc
Q 048551 214 EMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDD 292 (409)
Q Consensus 214 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~ 292 (409)
..--.+.+...+..|..-+..+++|+.|++++|+++++-+.+|.+..++++|.|..|++..+.-..|. +..+ +.|+|.
T Consensus 252 ~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L-~tL~L~ 330 (498)
T KOG4237|consen 252 PSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL-KTLSLY 330 (498)
T ss_pred HHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc-eeeeec
Confidence 22222333344455555455777777777777777777777777777777777777777655444444 4444 677777
Q ss_pred cCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccc
Q 048551 293 DQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLS 338 (409)
Q Consensus 293 ~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~ 338 (409)
+|+++ .-.|..+ ..+.+|.+|+|-.|.+-
T Consensus 331 ~N~it------~~~~~aF-----------~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 331 DNQIT------TVAPGAF-----------QTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CCeeE------EEecccc-----------cccceeeeeehccCccc
Confidence 77776 3334333 34466788888777654
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.62 E-value=2.7e-15 Score=153.14 Aligned_cols=146 Identities=27% Similarity=0.446 Sum_probs=115.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC-----CceeeecC--------CCcEEEecCCCCccccCccccCCCC
Q 048551 27 NANETDRLALLAIKSQLHDPLEVTSSLTNSVNLC-----EWTGVTCA--------SLRFINIADNGVQGEIPNELGNLVR 93 (409)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c-----~~~g~~c~--------~l~~L~L~~n~l~~~~p~~~~~l~~ 93 (409)
...++|.++|+.+|+++.++.. .+|.. ++| .|.|+.|. .++.|+|++|++.|.+|..+..+++
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~ 443 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH 443 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence 3566899999999999865532 37864 344 79999994 2677888888888888888888888
Q ss_pred CCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCC-CCCcEEeCC
Q 048551 94 LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNL-SSHLEADSN 172 (409)
Q Consensus 94 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~l~ 172 (409)
|+.|+|++|.++|.+|..+..+++|+.|++++|.+++.+|+.++++++|++|++++|.+++.+|..+... .++..+++.
T Consensus 444 L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence 8888888888888888888888888888888888888888888888888888888888888888777653 355666776
Q ss_pred CCCC
Q 048551 173 RNNF 176 (409)
Q Consensus 173 ~n~l 176 (409)
+|..
T Consensus 524 ~N~~ 527 (623)
T PLN03150 524 DNAG 527 (623)
T ss_pred CCcc
Confidence 6653
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.51 E-value=5e-16 Score=147.83 Aligned_cols=195 Identities=24% Similarity=0.324 Sum_probs=137.4
Q ss_pred EEEecCCCCccccCcc--ccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeec
Q 048551 72 FINIADNGVQGEIPNE--LGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCV 149 (409)
Q Consensus 72 ~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~ 149 (409)
+|.|++-++. .+|.. -..+..-...|++.|++. ++|..+..+..|+.+.+..|.+. .+|..++++..|.+++++.
T Consensus 54 ~l~Ls~rrlk-~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLK-EFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhh-cCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence 3455555554 34422 133444556677777777 67777777777777777777777 6777777777777777777
Q ss_pred ccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCch
Q 048551 150 IKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPP 229 (409)
Q Consensus 150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 229 (409)
|++. .+|..++.++ |+.|-+++|+++ .+|..++....|..|+.+.|.+...++.++++.+|+.|.+..|++. .+|+
T Consensus 131 NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 131 NQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred chhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence 7776 6677777665 677777777776 6677777777777777777777776667777777777777777777 7777
Q ss_pred HHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCcccc
Q 048551 230 VIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKS 276 (409)
Q Consensus 230 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 276 (409)
.+. .++ |..||++.|+++ .+|-.|.+|++|++|-|.+|.+...+
T Consensus 207 El~-~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 207 ELC-SLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred HHh-CCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCCh
Confidence 776 444 677777777777 67777777777777777777777655
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.44 E-value=2.3e-15 Score=143.41 Aligned_cols=192 Identities=26% Similarity=0.335 Sum_probs=167.1
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
..+..|++.|++. .+|..+..+..|+.+.|..|.+. .+|..+..+..|.++|++.|++. .+|..++.++ |+.|-++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 4567899999999 99999999999999999999998 89999999999999999999999 8898888775 8999999
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP 228 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p 228 (409)
+|+++ .+|..++....|..||.+.|++. .+|..++++.+|+.|.+..|++...++.+..++ |..||++.|+++ .+|
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis-~iP 227 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKIS-YLP 227 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCcee-ecc
Confidence 99998 88999999999999999999998 778889999999999999999999888776554 889999999999 999
Q ss_pred hHHhhCCCccceeeccccccccccchhhhcCC---CCCEEEcccC
Q 048551 229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNAS---NRERLELSYN 270 (409)
Q Consensus 229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~---~L~~L~Ls~N 270 (409)
..|. +|+.|++|.|.+|.++ ..|..+.-.. --++|+...+
T Consensus 228 v~fr-~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 228 VDFR-KMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhh-hhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 9998 9999999999999998 5565543222 2344555444
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.38 E-value=3.5e-13 Score=131.24 Aligned_cols=196 Identities=26% Similarity=0.380 Sum_probs=143.9
Q ss_pred EEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCC-CCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551 72 FINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRS-KLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI 150 (409)
Q Consensus 72 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 150 (409)
.+++..+.+. .....+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4677777764 22334555677888888888888 5666666664 8888888888888 66666788888888888888
Q ss_pred cccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchH
Q 048551 151 KLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPV 230 (409)
Q Consensus 151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 230 (409)
+++ .+|...+..+.|+.|++++|++. .+|........|+++.+++|.....+..+.++.++..+.+.+|++. .++..
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccch
Confidence 888 66666657788888888888887 5565555556688888888865555556777788888888888776 44555
Q ss_pred HhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCcccc
Q 048551 231 IGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKS 276 (409)
Q Consensus 231 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 276 (409)
+. .++++++|++++|.++. ++. ++...+++.|++++|.+....
T Consensus 251 ~~-~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 251 IG-NLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred hc-cccccceeccccccccc-ccc-ccccCccCEEeccCccccccc
Confidence 55 77778888888888873 333 777888888888888876543
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=1.7e-12 Score=126.53 Aligned_cols=180 Identities=27% Similarity=0.412 Sum_probs=155.9
Q ss_pred CCcEEEecCCCCccccCccccCCC-CCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 69 SLRFINIADNGVQGEIPNELGNLV-RLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
.++.+++.+|.++ .++.....+. +|+.|++++|++. .+|..+..++.|+.|++++|+++ .+|...+..+.|+.|++
T Consensus 117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 5889999999999 8887888885 9999999999999 66677899999999999999999 67776668899999999
Q ss_pred ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccC
Q 048551 148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNL 227 (409)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~ 227 (409)
++|+++ .+|........|+++.+++|.+. ..+..+.++.++..+.+.+|++...+..+..+++++.|++++|.++ .+
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~-~i 270 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQIS-SI 270 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccc-cc
Confidence 999999 78877667778999999999654 5666788899999999999998876557888999999999999998 77
Q ss_pred chHHhhCCCccceeeccccccccccchhh
Q 048551 228 PPVIGAKLPNLRKIVIALNNFTGPLPDSF 256 (409)
Q Consensus 228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l 256 (409)
+. ++ .+.+++.|++++|.+....|...
T Consensus 271 ~~-~~-~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 271 SS-LG-SLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cc-cc-ccCccCEEeccCccccccchhhh
Confidence 66 55 78999999999999986666543
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.23 E-value=2e-11 Score=124.84 Aligned_cols=116 Identities=29% Similarity=0.528 Sum_probs=86.6
Q ss_pred cceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCC
Q 048551 238 LRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLD 317 (409)
Q Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~ 317 (409)
++.|+|++|.+.|.+|..+..+++|+.|+|++|+++ +.+|..++.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~------------------------------g~iP~~~~~----- 464 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR------------------------------GNIPPSLGS----- 464 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc------------------------------CcCChHHhC-----
Confidence 445555555555555555555555555555555554 477877654
Q ss_pred ccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC--CCCCCCCeecccCCCCceecCCCCCCC
Q 048551 318 SLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK--GVFNNKTRISLAGNGKLCGGFDGLHSP 394 (409)
Q Consensus 318 ~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~--~~~~~L~~L~l~~Np~l~g~~p~~~~~ 394 (409)
+++|+.|+|++|+++|.+|..+.++++|++|+| +|++.|.+|.. ..+.++..+++.+|+.+||. |. ++
T Consensus 465 ------l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~-p~--l~ 535 (623)
T PLN03150 465 ------ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI-PG--LR 535 (623)
T ss_pred ------CCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCC-CC--CC
Confidence 467799999999999999999999999999999 99999999986 33456778999999999984 43 56
Q ss_pred CCC
Q 048551 395 SCH 397 (409)
Q Consensus 395 ~~~ 397 (409)
.|.
T Consensus 536 ~C~ 538 (623)
T PLN03150 536 ACG 538 (623)
T ss_pred CCc
Confidence 785
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=9.2e-12 Score=110.48 Aligned_cols=108 Identities=22% Similarity=0.178 Sum_probs=68.2
Q ss_pred ccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccc
Q 048551 160 IQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLR 239 (409)
Q Consensus 160 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~ 239 (409)
....+.|+++|+++|.|+ .+.+++.-.+.++.|+++.|.+..... +..+++|+.||+++|.++ .+..+-. .+-+++
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~-KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHL-KLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHh-hhcCEe
Confidence 334456777777777776 455555556777777777777765433 566677777777777776 4443333 566777
Q ss_pred eeeccccccccccchhhhcCCCCCEEEcccCcCc
Q 048551 240 KIVIALNNFTGPLPDSFSNASNRERLELSYNQFR 273 (409)
Q Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 273 (409)
+|.|++|.+.. -..++++-+|..||+++|+|.
T Consensus 356 tL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 356 TLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred eeehhhhhHhh--hhhhHhhhhheeccccccchh
Confidence 77777776652 234556666677777777664
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=3.5e-11 Score=101.87 Aligned_cols=108 Identities=24% Similarity=0.297 Sum_probs=29.3
Q ss_pred CCCCCCEEEccCCcccccCCcccc-CCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccc-cCCCCCc
Q 048551 90 NLVRLEKLILANNSFSGTIPTNLS-LRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASI-QNLSSHL 167 (409)
Q Consensus 90 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~ 167 (409)
+...+++|+|++|.|+. +. .+. .+.+|+.|++++|.++ .+. .+..++.|++|++++|.++ .+.+.+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred ccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence 34456777777777663 22 233 4566677777777666 232 3555667777777777776 333333 3466677
Q ss_pred EEeCCCCCCCCCC-CCCCCCCCCCcEEEccCCcCcc
Q 048551 168 EADSNRNNFGGKI-PESPGQLRSLFYLNVGGNQFSG 202 (409)
Q Consensus 168 ~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~ 202 (409)
+|++++|+|...- -..+..+++|++|++.+|++..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 7777776665311 1223445555666665555543
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.2e-11 Score=114.87 Aligned_cols=138 Identities=24% Similarity=0.211 Sum_probs=78.7
Q ss_pred CCCCCcEEEeecccccccCC--ccccCCCCCcEEeCCCCCCCCCCC--CCCCCCCCCcEEEccCCcCcccCc--ccCCCC
Q 048551 138 NLFKLEKLSFCVIKLTGQLP--ASIQNLSSHLEADSNRNNFGGKIP--ESPGQLRSLFYLNVGGNQFSGMFL--PVYNLS 211 (409)
Q Consensus 138 ~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~--~~~~l~ 211 (409)
++.+|+++.|.++.+. ..+ +....+++++.||+++|-+....+ ....++++|+.|+++.|++..... .-..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4667777777777665 222 245567777777777776653211 223456777777777777654433 223456
Q ss_pred CCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCcccc
Q 048551 212 SLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKS 276 (409)
Q Consensus 212 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 276 (409)
.|+.|.++.|.++-.--.++...+|+|+.|++..|...........-+..|+.|||++|++-+.+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~ 262 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD 262 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc
Confidence 67777777777663222223235677777777776422222223344556677777777665443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=1e-10 Score=99.10 Aligned_cols=109 Identities=22% Similarity=0.284 Sum_probs=33.1
Q ss_pred CCCCCcEEeCCCCCCCCCCCCCCC-CCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccce
Q 048551 162 NLSSHLEADSNRNNFGGKIPESPG-QLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRK 240 (409)
Q Consensus 162 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~ 240 (409)
+..++++|++.+|.|.. +. .++ .+.+|+.|++++|.++... .+..++.|++|++++|+++ .++..+...+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 33455666666666652 22 233 3556666666666666542 4555667777777777776 554444324677777
Q ss_pred eeccccccccc-cchhhhcCCCCCEEEcccCcCcc
Q 048551 241 IVIALNNFTGP-LPDSFSNASNRERLELSYNQFRG 274 (409)
Q Consensus 241 L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~ 274 (409)
|++++|++... .-..+..+++|+.|++.+|+++.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 77777776532 11345667777777777777764
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.07 E-value=2.5e-10 Score=119.64 Aligned_cols=274 Identities=22% Similarity=0.187 Sum_probs=170.4
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCc--ccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNS--FSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
.++++.+-+|.+. .++.... .+.|++|-+..|. +.......|..++.|++||+++|.--+.+|..++.+-+|++|+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 6677888888876 5554443 3479999999996 5534445578899999999999877778999999999999999
Q ss_pred eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc---ccCCCCCCcEEEeecCcC
Q 048551 147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL---PVYNLSSLEMIYLHDNRL 223 (409)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~l~~L~~L~l~~n~l 223 (409)
++++.+. .+|..+.++..|.+|++..+.-...+|.....+.+|++|.+.......... .+.++..|+.+.......
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV 680 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh
Confidence 9999998 899999999999999999887665667767779999999987655322211 445556666665544332
Q ss_pred cccCchHHhhCCCccc----eeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCcccc
Q 048551 224 NGNLPPVIGAKLPNLR----KIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGR 299 (409)
Q Consensus 224 ~~~~p~~~~~~l~~L~----~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~ 299 (409)
.+-..+. .+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+......... +. ..++ .+.
T Consensus 681 --~~~e~l~-~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~--~~-~~~~----~f~-- 747 (889)
T KOG4658|consen 681 --LLLEDLL-GMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEE--SL-IVLL----CFP-- 747 (889)
T ss_pred --HhHhhhh-hhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhccccc--cc-chhh----hHH--
Confidence 1111111 233333 3333333332 3455677888999999988887643211100 00 0000 000
Q ss_pred ccccccCChhccCCCCCCccc-cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-ecccee
Q 048551 300 QQNICYLPTGISNLVNLDSLA-TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDG 362 (409)
Q Consensus 300 ~~~l~~ip~~~~~l~~L~~L~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~ 362 (409)
. .....+.++..++.++ ..-.++|+.|.+.+++....+......+..++.+-+ .+.+.+
T Consensus 748 --~--l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 748 --N--LSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred --H--HHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 0 0000112222233332 123578888888877666555555555555555444 444443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=1.5e-11 Score=109.13 Aligned_cols=129 Identities=19% Similarity=0.213 Sum_probs=70.5
Q ss_pred CCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEE
Q 048551 114 LRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYL 193 (409)
Q Consensus 114 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 193 (409)
-.+.|+++|+++|.|+ .+.++..-.+.++.|++++|.+. .+. .++.+++|+.||+++|.++ .+..+=.++-+++.|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 3445566666666665 45555555566666666666665 222 2555666666666666655 222222344556666
Q ss_pred EccCCcCcccCcccCCCCCCcEEEeecCcCcccCc--hHHhhCCCccceeeccccccc
Q 048551 194 NVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP--PVIGAKLPNLRKIVIALNNFT 249 (409)
Q Consensus 194 ~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~~l~~L~~L~L~~n~l~ 249 (409)
.++.|.+... ..+.++-+|..||+++|++. .+. ..++ ++|-|+++.|.+|.+.
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG-~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQIE-ELDEVNHIG-NLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheeccccccchh-hHHHhcccc-cccHHHHHhhcCCCcc
Confidence 6666655442 23455556666666666654 222 2344 5666666666666665
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.3e-11 Score=112.03 Aligned_cols=207 Identities=18% Similarity=0.113 Sum_probs=144.0
Q ss_pred CCcEEEecCCCCccccC-ccccCCCCCCEEEccCCcccccC--CccccCCCCCcEEEcCCCcCCccCCcc-cCCCCCCcE
Q 048551 69 SLRFINIADNGVQGEIP-NELGNLVRLEKLILANNSFSGTI--PTNLSLRSKLMLFFANRNILAGEIPAE-IGNLFKLEK 144 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~ 144 (409)
.|+.+.|.++.+..... .....+++++.|||+.|-+.... ..-...+++|+.|+++.|++....... -..+++|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 67888888887762221 35677889999999999776432 233467899999999999887322221 235778999
Q ss_pred EEeeccccccc-CCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc--ccCCCCCCcEEEeecC
Q 048551 145 LSFCVIKLTGQ-LPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL--PVYNLSSLEMIYLHDN 221 (409)
Q Consensus 145 L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n 221 (409)
|.++.|.++.. +-..+..+++|+.|++..|.....-......+..|+.|+|++|++..... ..+.++.|+.|+++.+
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 99999988742 22334577899999999986433444445567889999999998877663 6778889999999998
Q ss_pred cCccc-CchH----HhhCCCccceeeccccccccc-cchhhhcCCCCCEEEcccCcCccc
Q 048551 222 RLNGN-LPPV----IGAKLPNLRKIVIALNNFTGP-LPDSFSNASNRERLELSYNQFRGK 275 (409)
Q Consensus 222 ~l~~~-~p~~----~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~ 275 (409)
.+... .|+. ....+++|++|++..|++... .-..+..+++|+.|....|.++..
T Consensus 282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 88731 1221 112568899999999988621 112345566777777777777654
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=3e-11 Score=109.35 Aligned_cols=227 Identities=18% Similarity=0.142 Sum_probs=158.3
Q ss_pred CCcEEEecCCCCcc----ccCccccCCCCCCEEEccCC---cccccCCcc-------ccCCCCCcEEEcCCCcCCccCCc
Q 048551 69 SLRFINIADNGVQG----EIPNELGNLVRLEKLILANN---SFSGTIPTN-------LSLRSKLMLFFANRNILAGEIPA 134 (409)
Q Consensus 69 ~l~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n---~l~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~p~ 134 (409)
.++.++|++|.+.- .+...+.+.++|+..++++- ....++|+. +...++|++++||+|-+....+.
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 78899999998863 24456777788998888864 233345543 35677999999999988744443
Q ss_pred c----cCCCCCCcEEEeecccccccCC-------------ccccCCCCCcEEeCCCCCCCCCC----CCCCCCCCCCcEE
Q 048551 135 E----IGNLFKLEKLSFCVIKLTGQLP-------------ASIQNLSSHLEADSNRNNFGGKI----PESPGQLRSLFYL 193 (409)
Q Consensus 135 ~----~~~l~~L~~L~L~~n~l~~~~p-------------~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L 193 (409)
. +.++..|++|+|.+|.+.-.-. ...+.-+.|+.+...+|++...- ...|...+.|+.+
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leev 190 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEV 190 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceE
Confidence 3 4568899999999998752111 12344578999999999876322 2345566889999
Q ss_pred EccCCcCcccC--c---ccCCCCCCcEEEeecCcCccc----CchHHhhCCCccceeeccccccccccchhh-----hcC
Q 048551 194 NVGGNQFSGMF--L---PVYNLSSLEMIYLHDNRLNGN----LPPVIGAKLPNLRKIVIALNNFTGPLPDSF-----SNA 259 (409)
Q Consensus 194 ~l~~n~l~~~~--~---~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l-----~~l 259 (409)
.+..|.+...- . .+..++.|+.||+.+|-++.. +...+. .+++|+.|++++|.+...-...| ...
T Consensus 191 r~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~-s~~~L~El~l~dcll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 191 RLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS-SWPHLRELNLGDCLLENEGAIAFVDALKESA 269 (382)
T ss_pred EEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc-ccchheeecccccccccccHHHHHHHHhccC
Confidence 99998875221 1 677899999999999988733 223333 66789999999998875433333 346
Q ss_pred CCCCEEEcccCcCccccchhhh-----hcccCcEEecccCCcc
Q 048551 260 SNRERLELSYNQFRGKSIWRSA-----ATSYSQRLNDDDQNHH 297 (409)
Q Consensus 260 ~~L~~L~Ls~N~l~~~~~~~~~-----l~~l~~~L~l~~n~l~ 297 (409)
+.|++|.+.+|.|+........ .+.+ ..|++++|++.
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL-~kLnLngN~l~ 311 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDL-EKLNLNGNRLG 311 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhh-HHhcCCccccc
Confidence 8899999999998765421111 3445 88999999883
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.98 E-value=8.7e-11 Score=106.44 Aligned_cols=186 Identities=21% Similarity=0.200 Sum_probs=99.5
Q ss_pred cccCCCCCCEEEccCCccccc----CCccccCCCCCcEEEcCCC---cCCccCCcc-------cCCCCCCcEEEeecccc
Q 048551 87 ELGNLVRLEKLILANNSFSGT----IPTNLSLRSKLMLFFANRN---ILAGEIPAE-------IGNLFKLEKLSFCVIKL 152 (409)
Q Consensus 87 ~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n---~l~~~~p~~-------~~~l~~L~~L~L~~n~l 152 (409)
....+..++.++|++|.+..+ +...+.+.+.|+..++++- +....+|+. +..+++|++++||.|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 455677888999999988643 3445566778888877643 222334432 34567888888888887
Q ss_pred cccCCcc----ccCCCCCcEEeCCCCCCCCCC-------------CCCCCCCCCCcEEEccCCcCcccCc-----ccCCC
Q 048551 153 TGQLPAS----IQNLSSHLEADSNRNNFGGKI-------------PESPGQLRSLFYLNVGGNQFSGMFL-----PVYNL 210 (409)
Q Consensus 153 ~~~~p~~----l~~l~~L~~L~l~~n~l~~~~-------------~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~l 210 (409)
....++. +.++..|++|.+.+|.+.-.- ....+.-++|+++..+.|++..... .+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 6544443 345677888888887765111 1112233455555555555543221 23334
Q ss_pred CCCcEEEeecCcCccc----CchHHhhCCCccceeeccccccccc----cchhhhcCCCCCEEEcccCcCc
Q 048551 211 SSLEMIYLHDNRLNGN----LPPVIGAKLPNLRKIVIALNNFTGP----LPDSFSNASNRERLELSYNQFR 273 (409)
Q Consensus 211 ~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~ 273 (409)
+.|+.+.+..|.+... +...+. .+++|+.|||.+|-++.. +...+..+++|++|+++++.+.
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~-~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALE-HCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHH-hCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 4555555555544311 111222 445555555555544421 1223344445555555555444
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.92 E-value=1.1e-10 Score=114.16 Aligned_cols=151 Identities=22% Similarity=0.225 Sum_probs=78.9
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEE
Q 048551 90 NLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEA 169 (409)
Q Consensus 90 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (409)
.+..++.+.++.|.+. .+-..+..+++|+.|++.+|.|. .+...+..+++|++|++++|.|+.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 3455555556666665 22333555666666666666666 2333355566666666666666532 224455556666
Q ss_pred eCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcc-cCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccccc
Q 048551 170 DSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLP-VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF 248 (409)
Q Consensus 170 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l 248 (409)
++++|.++.. ..+..+.+|+.+++++|.+...... ...+.+++.+++.+|.+. .+.. +. .+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~-~i~~-~~-~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR-EIEG-LD-LLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh-cccc-hH-HHHHHHHhhcccccc
Confidence 6666666521 2334455666666666666544322 345555666666666554 2221 11 233344445555555
Q ss_pred c
Q 048551 249 T 249 (409)
Q Consensus 249 ~ 249 (409)
+
T Consensus 221 ~ 221 (414)
T KOG0531|consen 221 S 221 (414)
T ss_pred e
Confidence 4
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=2.6e-10 Score=111.57 Aligned_cols=199 Identities=25% Similarity=0.260 Sum_probs=149.0
Q ss_pred ecCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEE
Q 048551 66 TCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKL 145 (409)
Q Consensus 66 ~c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 145 (409)
.|..+..+++..|.+. .+-..+..+++|+.|++.+|+|.. +...+..+++|++|++++|.|+...+ +..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc--hhhccchhhh
Confidence 4556777778888887 444568889999999999999984 44447789999999999999985444 6677889999
Q ss_pred EeecccccccCCccccCCCCCcEEeCCCCCCCCCCC-CCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCc
Q 048551 146 SFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIP-ESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLN 224 (409)
Q Consensus 146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~ 224 (409)
++++|.++. ...+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+..... +.....+..+++..|.++
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc-hHHHHHHHHhhcccccce
Confidence 999999983 2356668999999999999985444 2 4678889999999998876433 333445555588888887
Q ss_pred ccCchHHhhCCCc--cceeeccccccccccchhhhcCCCCCEEEcccCcCcccc
Q 048551 225 GNLPPVIGAKLPN--LRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKS 276 (409)
Q Consensus 225 ~~~p~~~~~~l~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 276 (409)
.+.... .+.. |+.+++++|.+. ..+..+..+..+..+++..|++....
T Consensus 222 -~~~~l~--~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 222 -KLEGLN--ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE 271 (414)
T ss_pred -eccCcc--cchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc
Confidence 332211 2233 889999999987 44456777888999999998887643
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=3.5e-09 Score=73.77 Aligned_cols=57 Identities=28% Similarity=0.266 Sum_probs=21.8
Q ss_pred CCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551 94 LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI 150 (409)
Q Consensus 94 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 150 (409)
|++|++++|+++...+..|.++++|++|++++|.++...|..|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 334444444443222233333444444444444433322333334444444444433
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.80 E-value=1.9e-09 Score=113.09 Aligned_cols=130 Identities=20% Similarity=0.189 Sum_probs=101.4
Q ss_pred ecCCCcEEEecCCC--CccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCc
Q 048551 66 TCASLRFINIADNG--VQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLE 143 (409)
Q Consensus 66 ~c~~l~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~ 143 (409)
.|..+++|-+.+|. +....+..|..++.|++|||++|.=-+.+|..++.+-+|++|++++..+. .+|..++++..|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 35578999999986 55233445888999999999998776799999999999999999999999 8999999999999
Q ss_pred EEEeecccccccCCccccCCCCCcEEeCCCCCCC--CCCCCCCCCCCCCcEEEcc
Q 048551 144 KLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFG--GKIPESPGQLRSLFYLNVG 196 (409)
Q Consensus 144 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~ 196 (409)
+|++..+.....+|.....+++|++|.+...... ...-..+.++..|+.+...
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 9999998876566777777999999998765422 1222233455555555543
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=7.7e-09 Score=72.02 Aligned_cols=60 Identities=27% Similarity=0.363 Sum_probs=55.4
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcC
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNIL 128 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 128 (409)
+|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 689999999999966667899999999999999999988888999999999999999975
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.56 E-value=3.2e-09 Score=104.64 Aligned_cols=196 Identities=24% Similarity=0.254 Sum_probs=116.0
Q ss_pred CCCCcEEEeecccccccC-CccccCCCCCcEEeCCCCCCCCCCCCCCCCC-CCCcEEEccCCcCccc---C-------cc
Q 048551 139 LFKLEKLSFCVIKLTGQL-PASIQNLSSHLEADSNRNNFGGKIPESPGQL-RSLFYLNVGGNQFSGM---F-------LP 206 (409)
Q Consensus 139 l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~---~-------~~ 206 (409)
+++++.|.+-.-.-.+.. |-.+..+.+|+.|.+.++++.. ...+..+ ..|++|.- .|.+... + ..
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~n 159 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISN 159 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhh-hccHHHHHHHHHHhcccccc
Confidence 344444444333322222 5567777888888888888763 1122222 23444432 2222111 1 01
Q ss_pred cCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccC
Q 048551 207 VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYS 286 (409)
Q Consensus 207 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~ 286 (409)
-..+..|...+.++|.++ .+...+. -++.++.|+|++|+++.. +.+..+++|++|||++|+++.++
T Consensus 160 s~~Wn~L~~a~fsyN~L~-~mD~SLq-ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp---------- 225 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLV-LMDESLQ-LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVP---------- 225 (1096)
T ss_pred chhhhhHhhhhcchhhHH-hHHHHHH-HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcccc----------
Confidence 123456888889999988 6666665 678899999999999843 37888999999999999987543
Q ss_pred cEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCC
Q 048551 287 QRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVP 365 (409)
Q Consensus 287 ~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p 365 (409)
++.. .++. |..|.+++|.++. -..+.++.+|+.||+ +|-+.+.-.
T Consensus 226 ------------------~l~~-------------~gc~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hse 271 (1096)
T KOG1859|consen 226 ------------------QLSM-------------VGCK-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSE 271 (1096)
T ss_pred ------------------ccch-------------hhhh-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchh
Confidence 0100 1112 5666666666652 234566666667777 555543322
Q ss_pred CC--CCCCCCCeecccCCCCce
Q 048551 366 TK--GVFNNKTRISLAGNGKLC 385 (409)
Q Consensus 366 ~~--~~~~~L~~L~l~~Np~l~ 385 (409)
-. ..+..|+.|.|.|||.-|
T Consensus 272 L~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 272 LEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhHHHHHHHHHHHhhcCCcccc
Confidence 11 445667777777777555
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.53 E-value=3.1e-09 Score=104.73 Aligned_cols=127 Identities=22% Similarity=0.129 Sum_probs=68.2
Q ss_pred CCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCC-CCCCCCCcEEEc
Q 048551 117 KLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPES-PGQLRSLFYLNV 195 (409)
Q Consensus 117 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l 195 (409)
.|.+.+.++|.++ .+..++.-++.++.|+|++|+++.. +.+..++.|++||+++|.+. .+|.. ... ..|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~g-c~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVG-CKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhh-hhheeeee
Confidence 3555556666655 4444555566666666666666522 25566666666666666665 33321 122 23666666
Q ss_pred cCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccc
Q 048551 196 GGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFT 249 (409)
Q Consensus 196 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 249 (409)
.+|.++... .+.++.+|+.||+++|-+.+.---.+...+..|+.|.|.+|.+-
T Consensus 240 rnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 666655432 45566666666666665553211111113455666666666554
No 45
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.46 E-value=2.1e-07 Score=59.48 Aligned_cols=39 Identities=51% Similarity=0.839 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCC-CCCCCCCCCCCC--CCCCCceeeecC
Q 048551 30 ETDRLALLAIKSQLH-DPLEVTSSLTNS--VNLCEWTGVTCA 68 (409)
Q Consensus 30 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~--~~~c~~~g~~c~ 68 (409)
++|+++|++||+++. +|...+.+|... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 579999999999997 577789999987 799999999995
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.27 E-value=1.7e-07 Score=82.55 Aligned_cols=205 Identities=17% Similarity=0.121 Sum_probs=126.3
Q ss_pred CCcEEEecCCCCccc----cCccccCCCCCCEEEccCCc---ccccCC-------ccccCCCCCcEEEcCCCcCCccCCc
Q 048551 69 SLRFINIADNGVQGE----IPNELGNLVRLEKLILANNS---FSGTIP-------TNLSLRSKLMLFFANRNILAGEIPA 134 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~---l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~p~ 134 (409)
.++.++||+|-|... +...+.+-.+|+..+++.-- ..+.++ ..+.++++|+..+++.|.+....|+
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 678889999988643 33455666778888777642 122233 2346788899999999988766665
Q ss_pred c----cCCCCCCcEEEeecccccccCCcc-------------ccCCCCCcEEeCCCCCCCCCCCC-----CCCCCCCCcE
Q 048551 135 E----IGNLFKLEKLSFCVIKLTGQLPAS-------------IQNLSSHLEADSNRNNFGGKIPE-----SPGQLRSLFY 192 (409)
Q Consensus 135 ~----~~~l~~L~~L~L~~n~l~~~~p~~-------------l~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~ 192 (409)
. +.+-+.|++|.+++|.+...-... ..+-|.|+.+....|++.. .+. .+..-..|+.
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENLKE 189 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCcee
Confidence 4 456778888888888775211111 2344677788777777642 111 1222256777
Q ss_pred EEccCCcCccc--Cc----ccCCCCCCcEEEeecCcCcccC----chHHhhCCCccceeeccccccccccchhh------
Q 048551 193 LNVGGNQFSGM--FL----PVYNLSSLEMIYLHDNRLNGNL----PPVIGAKLPNLRKIVIALNNFTGPLPDSF------ 256 (409)
Q Consensus 193 L~l~~n~l~~~--~~----~~~~l~~L~~L~l~~n~l~~~~----p~~~~~~l~~L~~L~L~~n~l~~~~p~~l------ 256 (409)
+.+..|.+.-. .. .++.+.+|+.||+.+|-++-.- ...+. .++.|+.|.+..|.++......+
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~-~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALC-EWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhc-ccchhhhccccchhhccccHHHHHHHhhh
Confidence 77777776432 11 3456677888888888776221 12223 45667778887777764333322
Q ss_pred hcCCCCCEEEcccCcCccc
Q 048551 257 SNASNRERLELSYNQFRGK 275 (409)
Q Consensus 257 ~~l~~L~~L~Ls~N~l~~~ 275 (409)
...++|..|-..+|.+.+.
T Consensus 269 ~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 269 KFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred hcCCCccccccchhhhcCc
Confidence 2346677777777776654
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.8e-08 Score=89.73 Aligned_cols=175 Identities=17% Similarity=0.074 Sum_probs=105.8
Q ss_pred CCCEEEccCCccccc-CCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCC--ccccCCCCCcEE
Q 048551 93 RLEKLILANNSFSGT-IPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLP--ASIQNLSSHLEA 169 (409)
Q Consensus 93 ~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L 169 (409)
.|++|||++..|+.. ...-++.+.+|+.|.+.++++.+.+...++.-.+|+.|+++.+.--.... --+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477888887777632 22334667778888888888777666667777778888887653211111 124567778888
Q ss_pred eCCCCCCCCCCCCC-CCC-CCCCcEEEccCCcCccc---Cc-ccCCCCCCcEEEeecCcC-cccCchHHhhCCCccceee
Q 048551 170 DSNRNNFGGKIPES-PGQ-LRSLFYLNVGGNQFSGM---FL-PVYNLSSLEMIYLHDNRL-NGNLPPVIGAKLPNLRKIV 242 (409)
Q Consensus 170 ~l~~n~l~~~~~~~-~~~-l~~L~~L~l~~n~l~~~---~~-~~~~l~~L~~L~l~~n~l-~~~~p~~~~~~l~~L~~L~ 242 (409)
+++++.+....... +.+ -++|+.|+++++.-.-. .. -...+++|.+||+++|.. +...-..++ +++.|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeee
Confidence 88877765332211 111 15677777776532111 11 234677888888887643 322333455 677888888
Q ss_pred ccccccccccchh---hhcCCCCCEEEcccC
Q 048551 243 IALNNFTGPLPDS---FSNASNRERLELSYN 270 (409)
Q Consensus 243 L~~n~l~~~~p~~---l~~l~~L~~L~Ls~N 270 (409)
++.|.. .+|.. +...++|.+|+..+.
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 877753 34443 456677777776554
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=1e-06 Score=78.80 Aligned_cols=210 Identities=14% Similarity=0.065 Sum_probs=118.2
Q ss_pred cccCCCCCCEEEccCCcccccCC-ccc-cCCCCCcEEEcCCCcCCc--cCCcccCCCCCCcEEEeecccccccCCccccC
Q 048551 87 ELGNLVRLEKLILANNSFSGTIP-TNL-SLRSKLMLFFANRNILAG--EIPAEIGNLFKLEKLSFCVIKLTGQLPASIQN 162 (409)
Q Consensus 87 ~~~~l~~L~~L~L~~n~l~~~~~-~~~-~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 162 (409)
.+.....++.+.+.++.|..+-. ..| ...+.++.+|+.+|.|++ .+...+.++|.|++|+++.|.+...+-..-..
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p 119 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP 119 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence 34444566677777776653211 112 356788899999998873 23334677889999999999887543322235
Q ss_pred CCCCcEEeCCCCCCCCCC-CCCCCCCCCCcEEEccCCcCcccCc---ccCCCC-CCcEEEeecCcCcccC-chHHhhCCC
Q 048551 163 LSSHLEADSNRNNFGGKI-PESPGQLRSLFYLNVGGNQFSGMFL---PVYNLS-SLEMIYLHDNRLNGNL-PPVIGAKLP 236 (409)
Q Consensus 163 l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~l~-~L~~L~l~~n~l~~~~-p~~~~~~l~ 236 (409)
..+|+.|-+.+..+.... ...+..++.++.|+++.|.+...-. ....+. .+++++...|...--. -..+...+|
T Consensus 120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 567888888887665322 2345577888888888885433211 122222 3444444444321000 001112456
Q ss_pred ccceeecccccccccc-chhhhcCCCCCEEEcccCcCccccc-hhhh-hcccCcEEecccCCcc
Q 048551 237 NLRKIVIALNNFTGPL-PDSFSNASNRERLELSYNQFRGKSI-WRSA-ATSYSQRLNDDDQNHH 297 (409)
Q Consensus 237 ~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~-l~~l~~~L~l~~n~l~ 297 (409)
++..+.+..|.+.... ......++.+..|.|+.|+|.+... .... .+.+ ..|.+++|.+.
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l-~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQL-VDLRVSENPLS 262 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchh-heeeccCCccc
Confidence 7777777777665321 1234455666677777777766541 1111 3333 56666666665
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.14 E-value=6e-07 Score=79.26 Aligned_cols=114 Identities=21% Similarity=0.209 Sum_probs=61.7
Q ss_pred cCCCCCcEEeCCCCCCCCCCCCC----CCCCCCCcEEEccCCcCcccCc--------------ccCCCCCCcEEEeecCc
Q 048551 161 QNLSSHLEADSNRNNFGGKIPES----PGQLRSLFYLNVGGNQFSGMFL--------------PVYNLSSLEMIYLHDNR 222 (409)
Q Consensus 161 ~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~--------------~~~~l~~L~~L~l~~n~ 222 (409)
.+++.|+.+++++|.+....|.. ++.-+.|++|.+++|.+--... ...+-+.|+.++...|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 34455555555555554433332 2333455555555554421110 12245667788888777
Q ss_pred CcccCchHH----hhCCCccceeeccccccccccc-----hhhhcCCCCCEEEcccCcCccc
Q 048551 223 LNGNLPPVI----GAKLPNLRKIVIALNNFTGPLP-----DSFSNASNRERLELSYNQFRGK 275 (409)
Q Consensus 223 l~~~~p~~~----~~~l~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~Ls~N~l~~~ 275 (409)
+. ..|... ...-.+|+.+.+..|.|..... ..+..+.+|+.||++.|-++-.
T Consensus 169 le-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 169 LE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred hc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence 76 333321 1122578888888887762211 1235677888888888877643
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=8.6e-08 Score=75.94 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=61.6
Q ss_pred CCCCcEEEeecccccccCCcccc-CCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEE
Q 048551 139 LFKLEKLSFCVIKLTGQLPASIQ-NLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIY 217 (409)
Q Consensus 139 l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 217 (409)
...|...++++|.+. .+|..|. ..+.++.+++++|+++ .+|..+..++.|+.|+++.|.+...+..+..+.++-.|+
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 344555566666665 4444443 3345666666666665 555556666666666666666665554555566666666
Q ss_pred eecCcCcccCchHHhhCCCccceeeccccccccccc
Q 048551 218 LHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLP 253 (409)
Q Consensus 218 l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p 253 (409)
..+|.+. .+|..++ .-...-..++.++.+.+.-+
T Consensus 130 s~~na~~-eid~dl~-~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 130 SPENARA-EIDVDLF-YSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred CCCCccc-cCcHHHh-ccccHHHHHhcCCcccccCc
Confidence 6666665 6665544 22222333445555554433
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.7e-07 Score=83.74 Aligned_cols=176 Identities=20% Similarity=0.217 Sum_probs=113.5
Q ss_pred CCCcEEEccCCcCcccCc--ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccc-cccc-cchhhhcCCCCC
Q 048551 188 RSLFYLNVGGNQFSGMFL--PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNN-FTGP-LPDSFSNASNRE 263 (409)
Q Consensus 188 ~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~ 263 (409)
+.|+++|+++..++...- .+..+.+|+.|.+.++++.+.+...++ .-.+|+.|+++.+. ++.. ..-.+.+|+.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 458888888887765433 466788888888889888877777777 67889999888763 3321 112357888899
Q ss_pred EEEcccCcCccccchhhh---hcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCC-cccc
Q 048551 264 RLELSYNQFRGKSIWRSA---ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSN-NLSG 339 (409)
Q Consensus 264 ~L~Ls~N~l~~~~~~~~~---l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N-~l~~ 339 (409)
.|+++++.+......... .+.+ ..|++++.+-. ++. . .+..| ...+|+|..||||+| .++.
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l-~~LNlsG~rrn-----l~~-----s---h~~tL-~~rcp~l~~LDLSD~v~l~~ 328 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETL-TQLNLSGYRRN-----LQK-----S---HLSTL-VRRCPNLVHLDLSDSVMLKN 328 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhh-hhhhhhhhHhh-----hhh-----h---HHHHH-HHhCCceeeeccccccccCc
Confidence 999988877654421111 1122 55555543211 000 0 00000 345788899999985 4565
Q ss_pred ccchhhhcCCCCcEEEe-eccceecCCCC----CCCCCCCeecccCC
Q 048551 340 QLPRLLVNLSFLVLLNL-YNHFDGEVPTK----GVFNNKTRISLAGN 381 (409)
Q Consensus 340 ~~p~~~~~l~~L~~L~L-~n~l~~~~p~~----~~~~~L~~L~l~~N 381 (409)
.....|..++.|++|.+ .+..+ +|.. ...|+|.+|++.|.
T Consensus 329 ~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 329 DCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 55667778888999988 55543 3432 66788888887765
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=5.9e-07 Score=80.29 Aligned_cols=84 Identities=21% Similarity=0.224 Sum_probs=40.8
Q ss_pred CCCCcEEeCCCCCCCC--CCCCCCCCCCCCcEEEccCCcCcccCccc-CCCCCCcEEEeecCcCcccCchHHhhCCCccc
Q 048551 163 LSSHLEADSNRNNFGG--KIPESPGQLRSLFYLNVGGNQFSGMFLPV-YNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLR 239 (409)
Q Consensus 163 l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~ 239 (409)
.+.++.+|+.+|.|+. .+...+.++|.|+.|+++.|.+...+..+ ....+|+.|-+.+..+.-.-...+...+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3455666666666652 22223445566666666666665544322 34455555555555443222222222444445
Q ss_pred eeecccc
Q 048551 240 KIVIALN 246 (409)
Q Consensus 240 ~L~L~~n 246 (409)
.|.++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 5554444
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.96 E-value=4.2e-07 Score=72.09 Aligned_cols=103 Identities=20% Similarity=0.278 Sum_probs=61.4
Q ss_pred cEEEecCCCCccccCcc---ccCCCCCCEEEccCCcccccCCccc-cCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 71 RFINIADNGVQGEIPNE---LGNLVRLEKLILANNSFSGTIPTNL-SLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 71 ~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
..++|+.|.+- .+++. +....+|...+|++|.+. .+|..| ..++..+.+++++|++. .+|..+..++.|+.++
T Consensus 30 h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 30 HFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 34555555554 33332 333445555666666666 344444 34456666667767666 5666666667777777
Q ss_pred eecccccccCCccccCCCCCcEEeCCCCCCC
Q 048551 147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFG 177 (409)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 177 (409)
++.|.+. ..|+.+..+.++..|+..+|.+.
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 7777666 55666666666666666666654
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1.1e-05 Score=51.59 Aligned_cols=38 Identities=37% Similarity=0.478 Sum_probs=23.6
Q ss_pred CccceeeccccccccccchhhhcCCCCCEEEcccCcCcc
Q 048551 236 PNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRG 274 (409)
Q Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 274 (409)
++|++|++++|+++ .+|..++++++|+.|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 35666777777776 455556677777777777776664
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.90 E-value=1.1e-05 Score=51.74 Aligned_cols=12 Identities=50% Similarity=0.678 Sum_probs=3.8
Q ss_pred CCEEEccCCccc
Q 048551 94 LEKLILANNSFS 105 (409)
Q Consensus 94 L~~L~L~~n~l~ 105 (409)
|++|++++|+|+
T Consensus 3 L~~L~l~~N~i~ 14 (44)
T PF12799_consen 3 LEELDLSNNQIT 14 (44)
T ss_dssp -SEEEETSSS-S
T ss_pred ceEEEccCCCCc
Confidence 333333333333
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=6.5e-05 Score=71.77 Aligned_cols=131 Identities=18% Similarity=0.175 Sum_probs=67.4
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCC-cCCccCCcccCCCCCCcEE
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN-ILAGEIPAEIGNLFKLEKL 145 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~L 145 (409)
|.++++|++++|.++ .+|. + -.+|++|.++++.--..+|..+ .++|++|++++| .+. .+|. +|+.|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSL 117 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceE
Confidence 457778888888777 5551 2 1357888887643322555444 246777777776 443 4443 35556
Q ss_pred Eeeccccc--ccCCccccCCCCCcEEeCCCCC-CC-CCCCCCCCCC-CCCcEEEccCCcCcccCcccCCCCCCcEEEeec
Q 048551 146 SFCVIKLT--GQLPASIQNLSSHLEADSNRNN-FG-GKIPESPGQL-RSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHD 220 (409)
Q Consensus 146 ~L~~n~l~--~~~p~~l~~l~~L~~L~l~~n~-l~-~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~ 220 (409)
++..+... +.+|. +|+.|.+.+++ .. ..+|. .+ ++|++|++++|.....++.+- .+|+.|+++.
T Consensus 118 ~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 118 EIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EeCCCCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCcccCccccc--ccCcEEEecc
Confidence 66554432 12332 34455553322 10 01111 11 456777776666443222221 4666666665
Q ss_pred C
Q 048551 221 N 221 (409)
Q Consensus 221 n 221 (409)
+
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 4
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.83 E-value=3.8e-05 Score=65.19 Aligned_cols=59 Identities=19% Similarity=0.180 Sum_probs=29.3
Q ss_pred CCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeeccccc
Q 048551 93 RLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLT 153 (409)
Q Consensus 93 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 153 (409)
+...+||++|.+.. -..|..++.|..|.+++|+|+..-|.--.-+++|+.|.+.+|.+.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 35555666665541 122445555555555555555333332233445555555555554
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.80 E-value=4.1e-05 Score=65.04 Aligned_cols=107 Identities=22% Similarity=0.275 Sum_probs=78.7
Q ss_pred eeecCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCC--cccCCCCC
Q 048551 64 GVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIP--AEIGNLFK 141 (409)
Q Consensus 64 g~~c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~ 141 (409)
|++-+....+||++|.+. .++ .|..++.|..|.+.+|.|+...|.--.-+++|+.|.+.+|.+. .+. .-+..+++
T Consensus 38 g~~~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 38 GATLDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPK 114 (233)
T ss_pred cccccccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCc
Confidence 444457788999999998 433 5788999999999999999776765567889999999999987 222 12667888
Q ss_pred CcEEEeecccccccC---CccccCCCCCcEEeCCC
Q 048551 142 LEKLSFCVIKLTGQL---PASIQNLSSHLEADSNR 173 (409)
Q Consensus 142 L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~l~~ 173 (409)
|++|.+-+|.++..- --.+..+++|+.||...
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 999988888876321 11345566666666544
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.72 E-value=1.2e-05 Score=82.86 Aligned_cols=183 Identities=19% Similarity=0.202 Sum_probs=113.2
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCccccc-------------CCccc--cCCCCCcEEEcCCCcCCc-cC
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGT-------------IPTNL--SLRSKLMLFFANRNILAG-EI 132 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-------------~~~~~--~~l~~L~~L~l~~n~l~~-~~ 132 (409)
+++.+++.+.......-....... |+.+.|.+-..... +...+ ..-.+|++|++++...-. .-
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W 139 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW 139 (699)
T ss_pred eeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence 556666666655533333333333 67776665422211 00000 224678889988765431 12
Q ss_pred CcccC-CCCCCcEEEeeccccccc-CCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc--ccC
Q 048551 133 PAEIG-NLFKLEKLSFCVIKLTGQ-LPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL--PVY 208 (409)
Q Consensus 133 p~~~~-~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~ 208 (409)
|..++ .+|+|+.|.+++-.+... +-.-..++++|..||+++.+++.. ..++.+++|+.|.+.+-.+..... .++
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 22333 478999999888766422 223445788899999999888743 567788888888888877765433 778
Q ss_pred CCCCCcEEEeecCcCcccCch------HHhhCCCccceeeccccccccccchh
Q 048551 209 NLSSLEMIYLHDNRLNGNLPP------VIGAKLPNLRKIVIALNNFTGPLPDS 255 (409)
Q Consensus 209 ~l~~L~~L~l~~n~l~~~~p~------~~~~~l~~L~~L~L~~n~l~~~~p~~ 255 (409)
++++|+.||+|..... ..+. +-+..+|+|+.||.+++.+.+.+-+.
T Consensus 218 ~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ 269 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEE 269 (699)
T ss_pred cccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHHHHHH
Confidence 8999999999876654 2221 11235788888888888777554443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.59 E-value=0.00051 Score=65.76 Aligned_cols=111 Identities=19% Similarity=0.172 Sum_probs=70.2
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCC-cccccCCccccCCCCCcEEEcCCCcCC--ccCCcccCCCCCCcEE
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANN-SFSGTIPTNLSLRSKLMLFFANRNILA--GEIPAEIGNLFKLEKL 145 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~l~~L~~L 145 (409)
+|++|.++++.--..+|..+. ++|++|++++| .+. .+|. .|+.|++..+... +.+|. +|+.|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPs------sLk~L 137 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPN------GLTSL 137 (426)
T ss_pred CCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcc------hHhhe
Confidence 799999998543336776553 58999999998 555 4554 4777888766543 13443 46667
Q ss_pred Eeeccccc--ccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCc
Q 048551 146 SFCVIKLT--GQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQ 199 (409)
Q Consensus 146 ~L~~n~l~--~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 199 (409)
.+.+++.. ...|..+. ++|++|++++|... ..|..+. .+|+.|.++.+.
T Consensus 138 ~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 138 SINSYNPENQARIDNLIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred eccccccccccccccccC--CcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 76443211 01121111 57999999988865 3444333 588999988764
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=2.3e-05 Score=80.74 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=92.6
Q ss_pred CCCCEEEccCCccccc-CCccc-cCCCCCcEEEcCCCcCCc-cCCcccCCCCCCcEEEeecccccccCCccccCCCCCcE
Q 048551 92 VRLEKLILANNSFSGT-IPTNL-SLRSKLMLFFANRNILAG-EIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLE 168 (409)
Q Consensus 92 ~~L~~L~L~~n~l~~~-~~~~~-~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 168 (409)
.+|++|++++...-.. -|..+ .-+|.|+.|.+.+-.+.. .+-....++++|..||+++.+++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4677888877543211 11222 347788888877765542 2233345677888888888887732 56777888888
Q ss_pred EeCCCCCCCC-CCCCCCCCCCCCcEEEccCCcCcccC-------cccCCCCCCcEEEeecCcCcccCchHHhhCCCccce
Q 048551 169 ADSNRNNFGG-KIPESPGQLRSLFYLNVGGNQFSGMF-------LPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRK 240 (409)
Q Consensus 169 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~ 240 (409)
|.+.+=.+.. ..-..+-++++|+.||+|........ ..-..+++|+.||.+++.+.+.+-..+-...++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 7777655542 11123456788888888776544322 122357888888888887776555554445566666
Q ss_pred eecc
Q 048551 241 IVIA 244 (409)
Q Consensus 241 L~L~ 244 (409)
+.+-
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 5543
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.37 E-value=0.00076 Score=54.28 Aligned_cols=58 Identities=21% Similarity=0.162 Sum_probs=18.7
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 88 LGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 88 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
|.++++|+.+.+.. .++......|.++++|+.+.+..+ +...-...|.++++++.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence 44444445444442 233233333444444444444432 32122223444444444444
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.35 E-value=0.00085 Score=53.96 Aligned_cols=83 Identities=13% Similarity=-0.016 Sum_probs=28.7
Q ss_pred cccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCC
Q 048551 111 NLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSL 190 (409)
Q Consensus 111 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 190 (409)
.|.++++|+.+.+.. .++..-...|..+++|+.+.+..+ +.......|.++++++.+.+.. .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344455555555543 233222333444545555555443 3322223344444444444433 2221222334444444
Q ss_pred cEEEcc
Q 048551 191 FYLNVG 196 (409)
Q Consensus 191 ~~L~l~ 196 (409)
+.+.+.
T Consensus 84 ~~i~~~ 89 (129)
T PF13306_consen 84 KNIDIP 89 (129)
T ss_dssp CEEEET
T ss_pred cccccC
Confidence 444443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.0002 Score=63.33 Aligned_cols=90 Identities=18% Similarity=0.153 Sum_probs=51.8
Q ss_pred cCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCC--cCCccCCcccCCCCCCcEEEeecccccccCCcc--
Q 048551 84 IPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRN--ILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPAS-- 159 (409)
Q Consensus 84 ~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-- 159 (409)
+....-.+..|+.|++.+..++.. ..+-.+++|+.|.++.| ++.+.++.....+++|+++++++|++.. ++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 444444555666666666666522 23445667777777777 5555555445555777777777777652 222
Q ss_pred -ccCCCCCcEEeCCCCCCC
Q 048551 160 -IQNLSSHLEADSNRNNFG 177 (409)
Q Consensus 160 -l~~l~~L~~L~l~~n~l~ 177 (409)
+..+.+|..|++.+|..+
T Consensus 111 pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcchhhhhcccCCcc
Confidence 334455556666665554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.95 E-value=0.00056 Score=60.56 Aligned_cols=84 Identities=21% Similarity=0.295 Sum_probs=43.4
Q ss_pred CCCCcEEEeecccccccCCccccCCCCCcEEeCCCC--CCCCCCCCCCCCCCCCcEEEccCCcCcccC--cccCCCCCCc
Q 048551 139 LFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRN--NFGGKIPESPGQLRSLFYLNVGGNQFSGMF--LPVYNLSSLE 214 (409)
Q Consensus 139 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~l~~L~ 214 (409)
+..|+.+++.+..++. -..+..+++|++|.++.| .+.+.++.....+++|+++++++|.+..+. ..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3344444444444441 123445556666666666 444444433444566666666666655321 1445555666
Q ss_pred EEEeecCcCc
Q 048551 215 MIYLHDNRLN 224 (409)
Q Consensus 215 ~L~l~~n~l~ 224 (409)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 6666666554
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=3.3e-05 Score=68.69 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=46.8
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCc--ccCCCCCCcEEE
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPA--EIGNLFKLEKLS 146 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~L~ 146 (409)
+++.|++-++++++. . ...+|+.|++|.|+-|+|+..-| +..+++|++|+|..|.|.+ +.+ .+.++++|+.|-
T Consensus 20 ~vkKLNcwg~~L~DI-s-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-S-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH-H-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHh
Confidence 456666666666632 1 24456667777777777764333 5566666666666666652 221 244556666666
Q ss_pred eeccccccc
Q 048551 147 FCVIKLTGQ 155 (409)
Q Consensus 147 L~~n~l~~~ 155 (409)
|..|.-.+.
T Consensus 95 L~ENPCc~~ 103 (388)
T KOG2123|consen 95 LDENPCCGE 103 (388)
T ss_pred hccCCcccc
Confidence 655554443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=8.6e-05 Score=66.12 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=71.5
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCC--ccccCCCCCc
Q 048551 90 NLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLP--ASIQNLSSHL 167 (409)
Q Consensus 90 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~ 167 (409)
.+.+.+.|++.++.++++ .....++.|++|.|+-|+|+...| +..++.|++|+|..|.|.. +. ..+.++++|+
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIES-LDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhccccc-HHHHHHHhcCchhh
Confidence 355677888888888743 224578888888888888885444 7778888888888888863 22 3467888888
Q ss_pred EEeCCCCCCCCCCCCC-----CCCCCCCcEEE
Q 048551 168 EADSNRNNFGGKIPES-----PGQLRSLFYLN 194 (409)
Q Consensus 168 ~L~l~~n~l~~~~~~~-----~~~l~~L~~L~ 194 (409)
.|+|..|.-.|.-+.. +.-+++|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888888876655432 34567777775
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.73 E-value=0.0042 Score=33.08 Aligned_cols=21 Identities=48% Similarity=0.732 Sum_probs=16.7
Q ss_pred CCCEEECcCCccccccchhhhc
Q 048551 326 SIEELDLSSNNLSGQLPRLLVN 347 (409)
Q Consensus 326 ~L~~L~Ls~N~l~~~~p~~~~~ 347 (409)
+|++||+++|+|+ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4789999999999 77776654
No 69
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.63 E-value=0.00035 Score=65.69 Aligned_cols=56 Identities=18% Similarity=0.033 Sum_probs=32.6
Q ss_pred CCCCCCEEECcCCccc-cccchhhhcCCCCcEEEe-eccceecCCC---CCCCCCCCeecc
Q 048551 323 SLKSIEELDLSSNNLS-GQLPRLLVNLSFLVLLNL-YNHFDGEVPT---KGVFNNKTRISL 378 (409)
Q Consensus 323 ~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L-~n~l~~~~p~---~~~~~~L~~L~l 378 (409)
++..|+.+.|++...+ +..-..+...++|+.+++ ...-...-+. ..++|+++...+
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 3466777777776543 333445667778888888 5554332222 156666665544
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.17 E-value=0.0084 Score=31.88 Aligned_cols=11 Identities=36% Similarity=0.468 Sum_probs=4.2
Q ss_pred CEEEccCCccc
Q 048551 95 EKLILANNSFS 105 (409)
Q Consensus 95 ~~L~L~~n~l~ 105 (409)
++|+|++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.70 E-value=0.001 Score=62.64 Aligned_cols=64 Identities=19% Similarity=0.150 Sum_probs=40.5
Q ss_pred CCCCCCCEEECcCCcccccc-----chhhhcCCCCcEEEe-eccceecCCCC--CCCCCCCeecccCCCCce
Q 048551 322 DSLKSIEELDLSSNNLSGQL-----PRLLVNLSFLVLLNL-YNHFDGEVPTK--GVFNNKTRISLAGNGKLC 385 (409)
Q Consensus 322 ~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L-~n~l~~~~p~~--~~~~~L~~L~l~~Np~l~ 385 (409)
.+++.|+.+.++++...... ...-..+..|..+.| +...+..-.-. ...++|+.+++.+.-.++
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 35788888899877543111 122345677888888 55554332221 567888888888876665
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.15 E-value=0.011 Score=58.79 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=8.4
Q ss_pred CCCCCeecccCCCCce
Q 048551 370 FNNKTRISLAGNGKLC 385 (409)
Q Consensus 370 ~~~L~~L~l~~Np~l~ 385 (409)
..++..+++.+.+.+.
T Consensus 426 ~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 426 CSNLKDLDLSGCRVIT 441 (482)
T ss_pred hhccccCCccCccccc
Confidence 4445556666554443
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.97 E-value=0.00041 Score=68.60 Aligned_cols=181 Identities=23% Similarity=0.186 Sum_probs=88.2
Q ss_pred CCEEEccCCcccccCC----ccccCCCCCcEEEcCCCcCCccCCc----ccCCC-CCCcEEEeeccccccc----CCccc
Q 048551 94 LEKLILANNSFSGTIP----TNLSLRSKLMLFFANRNILAGEIPA----EIGNL-FKLEKLSFCVIKLTGQ----LPASI 160 (409)
Q Consensus 94 L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~p~----~~~~l-~~L~~L~L~~n~l~~~----~p~~l 160 (409)
+.++.|.+|.+..... ..+...+.|+.|+++.|.+.+.--. .+... ..+++|++..|.+++. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4555555555543211 2233445555555555555422111 11111 3444555555555432 22334
Q ss_pred cCCCCCcEEeCCCCCCCC----CCCC----CCCCCCCCcEEEccCCcCcccCc-----ccCCCCC-CcEEEeecCcCccc
Q 048551 161 QNLSSHLEADSNRNNFGG----KIPE----SPGQLRSLFYLNVGGNQFSGMFL-----PVYNLSS-LEMIYLHDNRLNGN 226 (409)
Q Consensus 161 ~~l~~L~~L~l~~n~l~~----~~~~----~~~~l~~L~~L~l~~n~l~~~~~-----~~~~l~~-L~~L~l~~n~l~~~ 226 (409)
.....++.++++.|.+.. .++. .+....++++|+++++.++...- .+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 445555666666655531 0111 12235566667776666553211 2233333 55577777766532
Q ss_pred ----CchHHhhCC-Cccceeeccccccccccc----hhhhcCCCCCEEEcccCcCccc
Q 048551 227 ----LPPVIGAKL-PNLRKIVIALNNFTGPLP----DSFSNASNRERLELSYNQFRGK 275 (409)
Q Consensus 227 ----~p~~~~~~l-~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~N~l~~~ 275 (409)
+.+.+. .+ ..++.++++.|.+++... ..+..++.++.+.+++|.+.+.
T Consensus 249 g~~~L~~~l~-~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 249 GVEKLLPCLS-VLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred HHHHHHHHhc-ccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 122222 23 456777777777764333 3345566777777777777654
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.64 E-value=0.0059 Score=60.86 Aligned_cols=110 Identities=14% Similarity=0.018 Sum_probs=47.7
Q ss_pred CCCCCEEEccCCc-cccc-CCccccCCCCCcEEEcCCC-cCCccCC----cccCCCCCCcEEEeeccc-ccccCCccccC
Q 048551 91 LVRLEKLILANNS-FSGT-IPTNLSLRSKLMLFFANRN-ILAGEIP----AEIGNLFKLEKLSFCVIK-LTGQLPASIQN 162 (409)
Q Consensus 91 l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~p----~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~ 162 (409)
.+.|+.+.+..+. ++.. .-......+.|+.|+++++ ......+ .....+.+|+.|+++++. ++...-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4555555555552 2211 1122345566666666542 1110111 112234556666666555 33222222222
Q ss_pred -CCCCcEEeCCCCC-CCCCCC-CCCCCCCCCcEEEccCCcC
Q 048551 163 -LSSHLEADSNRNN-FGGKIP-ESPGQLRSLFYLNVGGNQF 200 (409)
Q Consensus 163 -l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l 200 (409)
+++|++|.+.++. +++..- .....+++|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4566666655444 332111 1122445566666665543
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.61 E-value=0.043 Score=27.09 Aligned_cols=14 Identities=43% Similarity=0.686 Sum_probs=8.8
Q ss_pred CCCCEEECcCCccc
Q 048551 325 KSIEELDLSSNNLS 338 (409)
Q Consensus 325 ~~L~~L~Ls~N~l~ 338 (409)
++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 46788888888887
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.64 E-value=0.078 Score=28.68 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=14.8
Q ss_pred CCCCCEEECcCCccccccchhh
Q 048551 324 LKSIEELDLSSNNLSGQLPRLL 345 (409)
Q Consensus 324 l~~L~~L~Ls~N~l~~~~p~~~ 345 (409)
+++|+.|+|++|+|++.....+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3678999999999987655544
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.50 E-value=0.0069 Score=52.93 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=71.4
Q ss_pred CCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCC
Q 048551 183 SPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNR 262 (409)
Q Consensus 183 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (409)
.+......+.||++.|++......+..++.+..++++.|.+. ..|..+. .+..++.+++..|..+ ..|.+++..+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~-q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAK-QQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHH-HHHHHHHHHhhccchh-hCCccccccCCc
Confidence 445566778888888888766556777788888999998887 8888887 6788888888888777 678888999999
Q ss_pred CEEEcccCcCcc
Q 048551 263 ERLELSYNQFRG 274 (409)
Q Consensus 263 ~~L~Ls~N~l~~ 274 (409)
+.+++.+|.+..
T Consensus 114 k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 114 KKNEQKKTEFFR 125 (326)
T ss_pred chhhhccCcchH
Confidence 999988887654
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.56 E-value=0.25 Score=27.21 Aligned_cols=20 Identities=55% Similarity=0.738 Sum_probs=15.3
Q ss_pred CCCCCEEECcCCccccccchh
Q 048551 324 LKSIEELDLSSNNLSGQLPRL 344 (409)
Q Consensus 324 l~~L~~L~Ls~N~l~~~~p~~ 344 (409)
+++|++|+|++|+|+. +|..
T Consensus 1 L~~L~~L~L~~N~l~~-lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSS-LPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCc-CCHH
Confidence 3678999999999984 4543
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.56 E-value=0.25 Score=27.21 Aligned_cols=20 Identities=55% Similarity=0.738 Sum_probs=15.3
Q ss_pred CCCCCEEECcCCccccccchh
Q 048551 324 LKSIEELDLSSNNLSGQLPRL 344 (409)
Q Consensus 324 l~~L~~L~Ls~N~l~~~~p~~ 344 (409)
+++|++|+|++|+|+. +|..
T Consensus 1 L~~L~~L~L~~N~l~~-lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSS-LPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCc-CCHH
Confidence 3678999999999984 4543
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.09 E-value=0.0069 Score=52.92 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=51.2
Q ss_pred cccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCC
Q 048551 87 ELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSH 166 (409)
Q Consensus 87 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 166 (409)
.+..+...+.||++.|++. ..-..|+-++.|..|+++.|.+. ..|..++.+..++.+++..|..+ ..|.+++..+.+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4455566666666666654 33344555556666666666665 55666665555666665555555 556666666666
Q ss_pred cEEeCCCCCCC
Q 048551 167 LEADSNRNNFG 177 (409)
Q Consensus 167 ~~L~l~~n~l~ 177 (409)
++++.-+|.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 66655555543
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.36 E-value=0.32 Score=26.77 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=10.2
Q ss_pred CCCcEEEeecCcCcccCchHH
Q 048551 211 SSLEMIYLHDNRLNGNLPPVI 231 (409)
Q Consensus 211 ~~L~~L~l~~n~l~~~~p~~~ 231 (409)
++|+.|++++|+++ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 34555555555555 445443
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.36 E-value=0.32 Score=26.77 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=10.2
Q ss_pred CCCcEEEeecCcCcccCchHH
Q 048551 211 SSLEMIYLHDNRLNGNLPPVI 231 (409)
Q Consensus 211 ~~L~~L~l~~n~l~~~~p~~~ 231 (409)
++|+.|++++|+++ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 34555555555555 445443
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=87.92 E-value=0.015 Score=57.66 Aligned_cols=108 Identities=22% Similarity=0.232 Sum_probs=59.9
Q ss_pred CCcEEeCCCCCCCCCCC----CCCCCCCCCcEEEccCCcCcccCc-----ccCCC-CCCcEEEeecCcCccc----CchH
Q 048551 165 SHLEADSNRNNFGGKIP----ESPGQLRSLFYLNVGGNQFSGMFL-----PVYNL-SSLEMIYLHDNRLNGN----LPPV 230 (409)
Q Consensus 165 ~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~l-~~L~~L~l~~n~l~~~----~p~~ 230 (409)
.+..+.+.+|.+..... ..+...+.|+.|++++|.+..... .+... ..++.|++..|.+++. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 36777788887764322 334556777778888887763221 12222 4556666666666532 3344
Q ss_pred HhhCCCccceeecccccccc----ccchhhh----cCCCCCEEEcccCcCc
Q 048551 231 IGAKLPNLRKIVIALNNFTG----PLPDSFS----NASNRERLELSYNQFR 273 (409)
Q Consensus 231 ~~~~l~~L~~L~L~~n~l~~----~~p~~l~----~l~~L~~L~Ls~N~l~ 273 (409)
+. ....++.++++.|.+.. .++..+. ...++++|.+.++.++
T Consensus 168 L~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 168 LE-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred Hh-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 44 35667777777776531 1222222 2445666666666555
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.80 E-value=0.5 Score=40.72 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=37.6
Q ss_pred CCEEECcCCccccccchhhhcCCCCcEEEe-eccceecC--CCC-CCCCCCCeecccCCCCce
Q 048551 327 IEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEV--PTK-GVFNNKTRISLAGNGKLC 385 (409)
Q Consensus 327 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~--p~~-~~~~~L~~L~l~~Np~l~ 385 (409)
++.+|-++..|.++--+.+.+++.++.|.+ ++.-.+.- ... +..++|+.|++++||.++
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 477788887777655566666667777776 44332211 000 356788888888888776
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.97 E-value=1.3 Score=24.51 Aligned_cols=18 Identities=44% Similarity=0.787 Sum_probs=14.2
Q ss_pred CCCCEEECcCCccccccch
Q 048551 325 KSIEELDLSSNNLSGQLPR 343 (409)
Q Consensus 325 ~~L~~L~Ls~N~l~~~~p~ 343 (409)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46789999999988 5664
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.46 E-value=1.9 Score=23.92 Aligned_cols=14 Identities=50% Similarity=0.800 Sum_probs=11.9
Q ss_pred CCCCEEECcCCccc
Q 048551 325 KSIEELDLSSNNLS 338 (409)
Q Consensus 325 ~~L~~L~Ls~N~l~ 338 (409)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 57889999999887
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.90 E-value=0.57 Score=40.37 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=17.2
Q ss_pred CCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCC
Q 048551 165 SHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGN 198 (409)
Q Consensus 165 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 198 (409)
.++.+|.++..|..+--+.+.+++.++.|.+.++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 4555666655555443344444555555554444
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.85 E-value=2.7 Score=23.60 Aligned_cols=15 Identities=53% Similarity=0.740 Sum_probs=12.9
Q ss_pred CCCCEEECcCCcccc
Q 048551 325 KSIEELDLSSNNLSG 339 (409)
Q Consensus 325 ~~L~~L~Ls~N~l~~ 339 (409)
++|++|||++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 578999999999974
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=59.17 E-value=6.4 Score=39.27 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=15.2
Q ss_pred CCCcEEEccCCcCcccCc--c-cCCCCCCcEEEeecC
Q 048551 188 RSLFYLNVGGNQFSGMFL--P-VYNLSSLEMIYLHDN 221 (409)
Q Consensus 188 ~~L~~L~l~~n~l~~~~~--~-~~~l~~L~~L~l~~n 221 (409)
+.+..+.+++|++..+.. . ....++|..|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344445555555443322 1 123445555555555
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.60 E-value=7.2 Score=38.89 Aligned_cols=62 Identities=26% Similarity=0.169 Sum_probs=34.3
Q ss_pred CCCCCCEEECcCCccccc--cchhhhcCCCCcEEEeecc--ceecCCCC--CCCCCCCeecccCCCCce
Q 048551 323 SLKSIEELDLSSNNLSGQ--LPRLLVNLSFLVLLNLYNH--FDGEVPTK--GVFNNKTRISLAGNGKLC 385 (409)
Q Consensus 323 ~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~n~--l~~~~p~~--~~~~~L~~L~l~~Np~l~ 385 (409)
+.+.+..++|++|++... +...-...|+|+.|+|.+| .....++. -....|++|-+.||| +|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP-lc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP-LC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc-cc
Confidence 346667777888877632 1222345677888888333 22222221 334556777778886 44
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=55.34 E-value=8.5 Score=20.96 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=13.4
Q ss_pred CCCCCeecccCCCCcee
Q 048551 370 FNNKTRISLAGNGKLCG 386 (409)
Q Consensus 370 ~~~L~~L~l~~Np~l~g 386 (409)
+++|+.|++++++.++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 36789999999987763
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=51.52 E-value=31 Score=33.94 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=12.1
Q ss_pred CCCcEEEcCCCcCCccCCccc
Q 048551 116 SKLMLFFANRNILAGEIPAEI 136 (409)
Q Consensus 116 ~~L~~L~l~~n~l~~~~p~~~ 136 (409)
+.+++++++.|.+....|-.+
T Consensus 165 pr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred chhhhhccCCCcccccCCccc
Confidence 445666666666655554433
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=49.05 E-value=38 Score=33.38 Aligned_cols=60 Identities=23% Similarity=0.206 Sum_probs=26.2
Q ss_pred CCcEEEecCCCCccccCccccCC---CCCCEEEccCCccccc---CCccccCCCCCcEEEcCCCcC
Q 048551 69 SLRFINIADNGVQGEIPNELGNL---VRLEKLILANNSFSGT---IPTNLSLRSKLMLFFANRNIL 128 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l---~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l 128 (409)
.+++++++.|...+.+|..+..+ .-+++++.+...++-. .+-....-+++...+++.|..
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 34555565555554555433221 1245555554444311 111223344555555555543
No 94
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=36.81 E-value=41 Score=25.08 Aligned_cols=45 Identities=9% Similarity=0.080 Sum_probs=31.0
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHHHHHhCCC
Q 048551 1 MHLPSVLQLFSALSLRLWCTTTTTIINANETDRLALLAIKSQLHD 45 (409)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 45 (409)
|+.++.-.++++++++++.+...-...-...--.++..||++..+
T Consensus 1 Mg~~g~~elliIlvIvlllFG~~KLPelg~~lGk~ik~FKka~~e 45 (92)
T PRK00442 1 MGIFDWKHWIVILVVVVLVFGTKKLKNLGSDVGESIKGFRKAMNE 45 (92)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 777777777777777776666555544444555678889998844
No 95
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=30.82 E-value=67 Score=22.89 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=30.0
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHHHHHhCCC
Q 048551 1 MHLPSVLQLFSALSLRLWCTTTTTIINANETDRLALLAIKSQLHD 45 (409)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 45 (409)
|+-++...++++++++++.+...-...-..+--.++..||++..+
T Consensus 1 Mgg~s~~ellIIlvIvlLlFG~~KLPel~r~lGk~ik~FKk~~~e 45 (75)
T PRK04561 1 MGSFSIWHWLVVLVIVLLVFGTKRLTSGAKDLGSAVKEFKKGMHD 45 (75)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 665666677777666666666555555444555678889998844
No 96
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=25.29 E-value=89 Score=22.25 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=28.2
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHHHHHhCCC
Q 048551 1 MHLPSVLQLFSALSLRLWCTTTTTIINANETDRLALLAIKSQLHD 45 (409)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 45 (409)
|+-++.-.++.+++++++.+...-...-...=-.++..||++..+
T Consensus 1 mg~~g~~elliIl~IvlllFG~kKLPelgr~lGkair~FK~~~~~ 45 (73)
T PRK02958 1 MGSFSIWHWLIVLVIVVLVFGTKKLRNIGSDLGGAVKGFKDGMKE 45 (73)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhcc
Confidence 555555666666666666666544444444555678889988844
No 97
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.56 E-value=47 Score=40.09 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=24.4
Q ss_pred EccCCcCcccCc-ccCCCCCCcEEEeecCcCc
Q 048551 194 NVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLN 224 (409)
Q Consensus 194 ~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~ 224 (409)
||++|+|+.+.+ .|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 467888887777 7777888888888888765
No 98
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=23.55 E-value=1.2e+02 Score=22.00 Aligned_cols=46 Identities=15% Similarity=0.071 Sum_probs=26.9
Q ss_pred CchhHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHHHHHhCCCC
Q 048551 1 MHLPSVLQLFSALSLRLWCTTTTTIINANETDRLALLAIKSQLHDP 46 (409)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 46 (409)
|+-.+.-+++.+++++++.+...-...-..+=-.++..||++..+.
T Consensus 1 Mgg~g~~ellIIlvIvlllFG~kKLP~l~~~lGk~ik~FKk~~~~~ 46 (78)
T PRK00720 1 MGSFSIWHWLIVLAVVLLLFGRGKISELMGDVAKGIKSFKKGMADD 46 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccc
Confidence 5555555666666666655554343333334456788899888443
No 99
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.32 E-value=65 Score=39.03 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=22.7
Q ss_pred EeecCcCcccCchHHhhCCCccceeeccccccc
Q 048551 217 YLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFT 249 (409)
Q Consensus 217 ~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 249 (409)
||++|+|+ .+|...+..+++|++|+|++|.+.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 46677777 677766666777777777777665
Done!