Query 048551
Match_columns 409
No_of_seqs 395 out of 3696
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 18:23:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048551.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048551hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.2E-45 1.1E-49 383.9 24.9 352 24-389 5-411 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-44 3.7E-49 340.5 21.7 294 27-388 2-308 (313)
3 4eco_A Uncharacterized protein 100.0 4.3E-44 1.5E-48 367.5 16.3 361 29-397 28-566 (636)
4 3rgz_A Protein brassinosteroid 100.0 3.5E-42 1.2E-46 360.8 25.3 321 68-400 318-752 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 2.1E-41 7E-46 354.8 25.9 351 27-390 265-823 (876)
6 3v47_A TOLL-like receptor 5B a 100.0 3.7E-38 1.3E-42 311.0 24.1 302 69-389 31-412 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 5.7E-37 1.9E-41 304.5 24.7 299 69-386 33-335 (477)
8 3t6q_A CD180 antigen; protein- 100.0 2.8E-36 9.5E-41 308.2 29.9 312 69-389 34-442 (606)
9 2z81_A CD282 antigen, TOLL-lik 100.0 6.2E-37 2.1E-41 309.3 23.8 307 69-385 27-511 (549)
10 4eco_A Uncharacterized protein 100.0 1.5E-37 5E-42 319.0 18.3 226 67-297 205-470 (636)
11 3vq2_A TLR4, TOLL-like recepto 100.0 3E-35 1E-39 300.6 25.7 315 68-386 56-560 (606)
12 3vq2_A TLR4, TOLL-like recepto 100.0 2E-35 7E-40 301.8 24.5 137 69-205 33-170 (606)
13 3t6q_A CD180 antigen; protein- 100.0 1.6E-34 5.6E-39 295.1 29.0 109 68-176 57-165 (606)
14 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-34 5.1E-39 299.4 28.9 227 69-297 26-285 (680)
15 3oja_B Anopheles plasmodium-re 100.0 1.5E-34 5.1E-39 294.8 27.2 317 47-386 6-360 (597)
16 3o6n_A APL1; leucine-rich repe 100.0 1.8E-34 6.3E-39 279.1 25.8 295 69-386 46-354 (390)
17 2z7x_B TOLL-like receptor 1, v 100.0 5E-35 1.7E-39 293.5 22.3 144 234-386 322-483 (520)
18 4ecn_A Leucine-rich repeat pro 100.0 5.3E-35 1.8E-39 306.3 22.7 303 67-385 447-841 (876)
19 3v47_A TOLL-like receptor 5B a 100.0 2.3E-34 8E-39 283.8 25.1 307 71-390 13-389 (455)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-34 5.2E-39 292.8 24.1 303 68-385 52-511 (562)
21 4fcg_A Uncharacterized protein 100.0 3E-35 1E-39 277.9 16.3 271 28-359 24-311 (328)
22 2id5_A Lingo-1, leucine rich r 100.0 1.2E-33 4.3E-38 280.4 27.5 296 71-389 14-313 (477)
23 2z63_A TOLL-like receptor 4, v 100.0 6.6E-34 2.3E-38 288.3 24.9 313 67-389 51-535 (570)
24 2z63_A TOLL-like receptor 4, v 100.0 6.1E-34 2.1E-38 288.6 24.3 318 69-390 29-512 (570)
25 1ziw_A TOLL-like receptor 3; i 100.0 7.9E-34 2.7E-38 293.9 25.6 315 69-387 249-625 (680)
26 2z7x_B TOLL-like receptor 1, v 100.0 1E-33 3.5E-38 284.1 23.1 127 68-200 21-150 (520)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-33 1.1E-37 283.1 25.2 306 67-390 30-490 (562)
28 3j0a_A TOLL-like receptor 5; m 100.0 3.9E-33 1.3E-37 295.2 23.4 302 68-381 24-391 (844)
29 4fmz_A Internalin; leucine ric 100.0 3.8E-32 1.3E-36 258.5 27.2 288 68-382 44-344 (347)
30 4g8a_A TOLL-like receptor 4; l 100.0 7.5E-32 2.6E-36 276.2 28.9 136 69-204 53-189 (635)
31 2ft3_A Biglycan; proteoglycan, 100.0 3E-32 1E-36 257.8 22.4 269 69-390 34-313 (332)
32 3j0a_A TOLL-like receptor 5; m 100.0 4.4E-32 1.5E-36 287.1 26.0 302 71-385 7-375 (844)
33 2z81_A CD282 antigen, TOLL-lik 100.0 4.9E-32 1.7E-36 273.5 24.7 312 59-385 3-423 (549)
34 1xku_A Decorin; proteoglycan, 100.0 1.1E-31 3.6E-36 253.8 24.2 270 69-390 32-312 (330)
35 2z80_A TOLL-like receptor 2, v 100.0 8.4E-32 2.9E-36 256.9 20.7 283 53-385 23-315 (353)
36 2ft3_A Biglycan; proteoglycan, 100.0 4.1E-31 1.4E-35 250.0 25.0 275 58-381 31-330 (332)
37 1xku_A Decorin; proteoglycan, 100.0 3.7E-31 1.3E-35 250.1 24.2 277 57-381 28-329 (330)
38 1o6v_A Internalin A; bacterial 100.0 6.8E-31 2.3E-35 260.0 26.6 290 67-386 67-389 (466)
39 3oja_B Anopheles plasmodium-re 100.0 1.7E-31 5.9E-36 272.2 22.0 293 67-390 74-386 (597)
40 3o6n_A APL1; leucine-rich repe 100.0 6E-31 2E-35 254.4 23.4 292 67-387 68-377 (390)
41 3bz5_A Internalin-J, INLJ; leu 100.0 1.5E-30 5.2E-35 256.3 26.4 290 69-390 65-392 (457)
42 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-30 4E-35 267.3 23.9 312 67-386 75-582 (635)
43 3bz5_A Internalin-J, INLJ; leu 100.0 6.9E-30 2.4E-34 251.6 27.4 285 67-386 41-353 (457)
44 1o6v_A Internalin A; bacterial 100.0 7E-30 2.4E-34 252.7 25.3 268 67-362 89-389 (466)
45 1ogq_A PGIP-2, polygalacturona 100.0 4.5E-31 1.5E-35 247.7 15.0 229 93-390 51-286 (313)
46 2z66_A Variable lymphocyte rec 100.0 4.9E-31 1.7E-35 246.5 15.2 276 58-387 5-290 (306)
47 4fmz_A Internalin; leucine ric 100.0 4.1E-29 1.4E-33 237.5 25.7 267 67-361 65-346 (347)
48 3zyj_A Leucine-rich repeat-con 100.0 6.5E-29 2.2E-33 244.0 25.0 201 69-275 44-246 (440)
49 3zyi_A Leucine-rich repeat-con 100.0 6.2E-29 2.1E-33 245.0 24.0 201 69-275 55-257 (452)
50 4fcg_A Uncharacterized protein 100.0 3.6E-29 1.2E-33 236.2 20.3 231 90-381 79-311 (328)
51 1ozn_A Reticulon 4 receptor; N 100.0 5.8E-29 2E-33 230.1 20.9 265 70-381 13-284 (285)
52 1ozn_A Reticulon 4 receptor; N 100.0 9.6E-29 3.3E-33 228.6 21.5 235 69-311 33-269 (285)
53 3zyj_A Leucine-rich repeat-con 100.0 1.5E-28 5.2E-33 241.4 23.2 248 93-386 44-294 (440)
54 2z80_A TOLL-like receptor 2, v 100.0 2.2E-29 7.7E-34 240.1 15.7 257 69-365 53-318 (353)
55 3zyi_A Leucine-rich repeat-con 100.0 2.8E-28 9.6E-33 240.3 23.0 248 93-386 55-305 (452)
56 1jl5_A Outer protein YOPM; leu 100.0 9.1E-28 3.1E-32 236.3 25.8 287 69-390 92-416 (454)
57 1wwl_A Monocyte differentiatio 100.0 1.3E-30 4.5E-35 244.4 4.8 217 52-273 23-266 (312)
58 2o6q_A Variable lymphocyte rec 100.0 1.1E-27 3.8E-32 219.7 22.4 215 57-275 2-220 (270)
59 1jl5_A Outer protein YOPM; leu 100.0 1.7E-28 5.7E-33 241.6 17.7 185 69-274 12-209 (454)
60 3g06_A SSPH2 (leucine-rich rep 100.0 2.3E-28 7.8E-33 248.2 19.2 272 50-382 12-295 (622)
61 2z66_A Variable lymphocyte rec 100.0 2.9E-28 1E-32 227.6 17.9 247 94-386 9-263 (306)
62 3o53_A Protein LRIM1, AGAP0063 100.0 3.2E-30 1.1E-34 242.3 4.3 266 70-366 12-281 (317)
63 1wwl_A Monocyte differentiatio 100.0 7.8E-30 2.7E-34 239.1 4.0 247 87-382 38-307 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.9 2E-28 7E-33 230.0 8.3 244 68-342 34-280 (317)
65 1z7x_W Ribonuclease inhibitor; 99.9 1.2E-29 4E-34 250.5 -0.8 274 94-381 87-408 (461)
66 1z7x_W Ribonuclease inhibitor; 99.9 7.7E-29 2.6E-33 244.6 2.9 296 69-381 86-437 (461)
67 3oja_A Leucine-rich immune mol 99.9 7.2E-28 2.5E-32 239.2 9.2 173 91-275 33-206 (487)
68 2z62_A TOLL-like receptor 4, v 99.9 3.3E-26 1.1E-30 210.5 17.3 204 69-274 29-238 (276)
69 3oja_A Leucine-rich immune mol 99.9 6.9E-27 2.4E-31 232.2 12.0 236 113-379 31-270 (487)
70 2z62_A TOLL-like receptor 4, v 99.9 2.1E-25 7.3E-30 205.1 20.7 174 72-249 11-190 (276)
71 1p9a_G Platelet glycoprotein I 99.9 1.1E-24 3.6E-29 201.9 19.7 199 68-274 10-209 (290)
72 3g06_A SSPH2 (leucine-rich rep 99.9 2.8E-24 9.6E-29 218.2 24.4 241 68-366 61-302 (622)
73 3rfs_A Internalin B, repeat mo 99.9 1.6E-25 5.4E-30 205.6 13.5 178 89-271 38-216 (272)
74 3m19_A Variable lymphocyte rec 99.9 1.2E-24 4.2E-29 197.2 17.8 189 58-250 3-193 (251)
75 4glp_A Monocyte differentiatio 99.9 1E-24 3.6E-29 204.0 15.4 180 93-273 65-264 (310)
76 2o6q_A Variable lymphocyte rec 99.9 8E-24 2.7E-28 194.0 20.2 182 69-251 38-220 (270)
77 3rfs_A Internalin B, repeat mo 99.9 4.5E-24 1.5E-28 195.9 16.5 196 68-275 41-237 (272)
78 1p9a_G Platelet glycoprotein I 99.9 2.3E-23 8E-28 192.9 20.5 179 88-273 6-185 (290)
79 2xwt_C Thyrotropin receptor; s 99.9 3.9E-24 1.3E-28 192.4 14.6 187 80-274 23-219 (239)
80 2xwt_C Thyrotropin receptor; s 99.9 7.8E-24 2.7E-28 190.5 15.9 197 69-271 32-237 (239)
81 2ast_B S-phase kinase-associat 99.9 2.8E-25 9.5E-30 210.1 4.0 209 58-271 35-258 (336)
82 3goz_A Leucine-rich repeat-con 99.9 1.7E-25 5.8E-30 214.0 2.3 261 72-344 2-303 (362)
83 3ogk_B Coronatine-insensitive 99.9 6.5E-25 2.2E-29 223.3 4.4 314 70-387 140-528 (592)
84 1h6u_A Internalin H; cell adhe 99.9 7.4E-23 2.5E-27 191.2 17.9 194 67-276 40-233 (308)
85 2ca6_A RAN GTPase-activating p 99.9 2.8E-25 9.4E-30 214.3 0.1 263 83-381 23-340 (386)
86 4glp_A Monocyte differentiatio 99.9 1.1E-23 3.7E-28 197.1 10.1 223 69-297 65-307 (310)
87 3goz_A Leucine-rich repeat-con 99.9 2.8E-24 9.4E-29 205.6 6.2 253 96-363 2-299 (362)
88 2ca6_A RAN GTPase-activating p 99.9 8.7E-25 3E-29 210.9 2.2 253 67-356 31-337 (386)
89 3m19_A Variable lymphocyte rec 99.9 2.7E-22 9.4E-27 181.7 18.4 179 92-275 14-194 (251)
90 2o6s_A Variable lymphocyte rec 99.9 3.2E-22 1.1E-26 176.0 16.5 186 57-261 4-190 (208)
91 1h6u_A Internalin H; cell adhe 99.9 2.7E-22 9.4E-27 187.3 16.4 173 88-274 37-209 (308)
92 4ay9_X Follicle-stimulating ho 99.9 5.1E-22 1.8E-26 188.9 18.5 239 71-335 12-256 (350)
93 3ogk_B Coronatine-insensitive 99.9 5.2E-24 1.8E-28 216.6 4.8 315 66-386 110-502 (592)
94 2ast_B S-phase kinase-associat 99.9 1.8E-23 6E-28 197.7 6.6 247 92-390 47-311 (336)
95 3cvr_A Invasion plasmid antige 99.9 4.6E-22 1.6E-26 199.7 16.1 197 52-276 35-246 (571)
96 4ay9_X Follicle-stimulating ho 99.9 1.6E-21 5.6E-26 185.4 16.7 241 95-385 12-259 (350)
97 2p1m_B Transport inhibitor res 99.9 3.6E-23 1.2E-27 210.5 5.5 315 66-383 103-518 (594)
98 3e6j_A Variable lymphocyte rec 99.8 3.2E-20 1.1E-24 165.7 16.6 166 51-228 10-176 (229)
99 3cvr_A Invasion plasmid antige 99.8 2.6E-20 8.8E-25 187.0 17.4 189 93-350 60-255 (571)
100 2o6s_A Variable lymphocyte rec 99.8 1.7E-20 5.6E-25 164.9 14.1 162 68-236 28-189 (208)
101 2xot_A Amphoterin-induced prot 99.8 8.4E-20 2.9E-24 174.3 16.5 176 70-249 20-202 (361)
102 1h6t_A Internalin B; cell adhe 99.8 4.3E-20 1.5E-24 171.0 14.0 170 91-274 45-214 (291)
103 2v9t_B SLIT homolog 2 protein 99.8 1.6E-19 5.5E-24 160.1 16.4 152 71-225 14-166 (220)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 2.7E-19 9.2E-24 158.7 17.1 155 71-228 14-170 (220)
105 1h6t_A Internalin B; cell adhe 99.8 1.5E-19 5.2E-24 167.3 15.1 170 67-250 45-214 (291)
106 2xot_A Amphoterin-induced prot 99.8 1.3E-19 4.6E-24 172.9 14.6 178 94-275 20-204 (361)
107 2v9t_B SLIT homolog 2 protein 99.8 3.1E-19 1.1E-23 158.2 15.2 145 58-202 9-166 (220)
108 3e6j_A Variable lymphocyte rec 99.8 5.1E-19 1.8E-23 157.9 16.4 155 94-252 21-175 (229)
109 2p1m_B Transport inhibitor res 99.8 2.7E-21 9.4E-26 196.5 1.6 308 67-383 65-493 (594)
110 1m9s_A Internalin B; cell inva 99.8 1.4E-19 4.7E-24 183.5 13.1 173 89-275 40-212 (605)
111 4b8c_D Glucose-repressible alc 99.8 1E-20 3.4E-25 196.3 4.8 231 29-270 130-369 (727)
112 2v70_A SLIT-2, SLIT homolog 2 99.8 5E-19 1.7E-23 156.9 14.7 147 58-204 9-169 (220)
113 1m9s_A Internalin B; cell inva 99.8 4E-19 1.4E-23 180.1 14.1 170 68-251 43-212 (605)
114 4ezg_A Putative uncharacterize 99.8 1E-18 3.5E-23 152.1 13.1 151 67-224 43-194 (197)
115 4ezg_A Putative uncharacterize 99.8 5.7E-19 2E-23 153.8 10.5 152 114-274 42-195 (197)
116 1xeu_A Internalin C; cellular 99.8 5.7E-19 2E-23 160.9 8.8 169 92-275 19-187 (263)
117 1xeu_A Internalin C; cellular 99.8 1.2E-18 4.2E-23 158.7 8.5 168 69-251 20-187 (263)
118 1w8a_A SLIT protein; signaling 99.7 7.8E-18 2.7E-22 145.9 11.7 131 71-204 11-142 (192)
119 1w8a_A SLIT protein; signaling 99.7 3.3E-17 1.1E-21 142.0 13.2 132 95-229 11-144 (192)
120 1dce_A Protein (RAB geranylger 99.7 1.2E-20 4.3E-25 190.0 -10.2 181 89-276 346-549 (567)
121 1dce_A Protein (RAB geranylger 99.7 3.4E-20 1.2E-24 186.8 -7.4 172 113-297 346-546 (567)
122 4b8c_D Glucose-repressible alc 99.7 3.6E-18 1.2E-22 177.1 5.0 191 71-273 204-404 (727)
123 2wfh_A SLIT homolog 2 protein 99.7 1.9E-16 6.4E-21 137.3 14.5 128 71-202 13-140 (193)
124 2ell_A Acidic leucine-rich nuc 99.7 5.4E-17 1.8E-21 137.4 10.5 131 92-224 24-160 (168)
125 2ell_A Acidic leucine-rich nuc 99.7 3.5E-17 1.2E-21 138.5 8.1 135 69-205 25-164 (168)
126 2o6r_A Variable lymphocyte rec 99.7 7.3E-16 2.5E-20 131.6 14.4 129 71-202 10-138 (177)
127 2je0_A Acidic leucine-rich nuc 99.7 4.9E-17 1.7E-21 134.8 6.2 126 69-196 18-148 (149)
128 2wfh_A SLIT homolog 2 protein 99.6 1.5E-15 5.2E-20 131.5 14.0 127 95-225 13-140 (193)
129 3sb4_A Hypothetical leucine ri 99.6 5.7E-16 1.9E-20 145.8 12.1 121 69-197 26-157 (329)
130 2je0_A Acidic leucine-rich nuc 99.6 1.4E-16 4.9E-21 131.9 7.0 110 92-203 17-128 (149)
131 2o6r_A Variable lymphocyte rec 99.6 3.7E-15 1.3E-19 127.1 14.4 132 94-228 9-141 (177)
132 3sb4_A Hypothetical leucine ri 99.6 4E-15 1.4E-19 140.0 12.2 195 68-266 49-327 (329)
133 1a9n_A U2A', U2A'; complex (nu 99.6 2.1E-15 7.1E-20 128.6 7.7 132 88-224 15-153 (176)
134 4fdw_A Leucine rich hypothetic 99.6 3.1E-13 1.1E-17 130.2 22.7 173 90-273 111-284 (401)
135 1a9n_A U2A', U2A'; complex (nu 99.6 7.3E-15 2.5E-19 125.2 9.5 130 138-274 17-154 (176)
136 1ds9_A Outer arm dynein; leuci 99.5 3.9E-17 1.3E-21 142.2 -6.6 154 89-274 15-186 (198)
137 4fdw_A Leucine rich hypothetic 99.5 4.9E-13 1.7E-17 128.9 21.0 259 68-381 113-380 (401)
138 1ds9_A Outer arm dynein; leuci 99.5 4.2E-17 1.4E-21 142.0 -8.2 131 69-204 19-156 (198)
139 3g39_A Variable lymphocyte rec 99.5 7.1E-14 2.4E-18 118.4 12.0 106 69-177 10-115 (170)
140 2r9u_A Variable lymphocyte rec 99.5 2E-13 6.7E-18 116.1 12.5 105 70-177 14-118 (174)
141 3g39_A Variable lymphocyte rec 99.5 3.5E-13 1.2E-17 114.1 12.7 105 94-201 11-115 (170)
142 2r9u_A Variable lymphocyte rec 99.5 6.9E-13 2.4E-17 112.7 12.8 105 95-202 15-119 (174)
143 2ifg_A High affinity nerve gro 99.3 8E-12 2.7E-16 118.1 11.8 102 73-177 13-116 (347)
144 3un9_A NLR family member X1; l 99.3 4.8E-14 1.6E-18 134.6 -4.3 164 92-256 72-259 (372)
145 4fs7_A Uncharacterized protein 99.3 2.9E-10 9.8E-15 109.4 20.0 291 67-381 70-376 (394)
146 3un9_A NLR family member X1; l 99.2 3.3E-13 1.1E-17 128.8 -2.1 161 115-276 71-255 (372)
147 2ifg_A High affinity nerve gro 99.2 3.5E-11 1.2E-15 113.7 11.6 106 95-203 11-118 (347)
148 4fs7_A Uncharacterized protein 99.1 1.4E-09 4.6E-14 104.7 17.9 297 80-400 59-369 (394)
149 4gt6_A Cell surface protein; l 99.0 3.7E-08 1.3E-12 94.6 21.8 147 69-220 65-214 (394)
150 2ra8_A Uncharacterized protein 99.0 2.5E-10 8.5E-15 108.1 5.6 68 209-276 250-323 (362)
151 2ra8_A Uncharacterized protein 98.9 6.3E-10 2.2E-14 105.3 6.1 198 69-271 108-341 (362)
152 4gt6_A Cell surface protein; l 98.9 7.7E-08 2.6E-12 92.3 20.2 285 66-381 85-388 (394)
153 4h09_A Hypothetical leucine ri 98.6 7.3E-06 2.5E-10 77.9 23.0 283 67-381 45-343 (379)
154 1io0_A Tropomodulin; LRR prote 98.5 2.2E-08 7.5E-13 85.6 1.6 63 139-201 92-164 (185)
155 1io0_A Tropomodulin; LRR prote 98.4 1.8E-08 6.3E-13 86.0 -1.2 88 137-224 62-164 (185)
156 3rw6_A Nuclear RNA export fact 98.4 9.9E-08 3.4E-12 85.9 1.8 64 90-155 168-235 (267)
157 3rw6_A Nuclear RNA export fact 98.1 1.4E-06 4.9E-11 78.3 4.7 78 67-146 169-257 (267)
158 4h09_A Hypothetical leucine ri 98.0 9.3E-05 3.2E-09 70.2 15.0 181 84-270 150-343 (379)
159 3e4g_A ATP synthase subunit S, 98.0 1.6E-06 5.6E-11 72.5 2.0 34 69-102 62-95 (176)
160 3e4g_A ATP synthase subunit S, 97.9 1.3E-05 4.5E-10 67.0 5.9 86 188-274 61-154 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00014 4.6E-09 62.0 1.6 82 69-150 42-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.0017 5.8E-08 55.2 6.5 66 209-275 39-113 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0024 8E-08 50.6 6.7 57 71-129 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0023 7.8E-08 50.7 4.7 56 215-273 12-68 (130)
165 2lz0_A Uncharacterized protein 48.7 42 0.0014 24.3 5.9 14 87-100 15-28 (100)
166 2lz0_A Uncharacterized protein 37.2 86 0.003 22.6 6.0 48 102-150 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.2e-45 Score=383.88 Aligned_cols=352 Identities=24% Similarity=0.307 Sum_probs=217.4
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCceeeecC--CCcEEEecCCCCccc---cCc------------
Q 048551 24 TIINANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCEWTGVTCA--SLRFINIADNGVQGE---IPN------------ 86 (409)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~~~g~~c~--~l~~L~L~~n~l~~~---~p~------------ 86 (409)
+++++.++|++||++||+++.||. .+++|..+.+||.|.||+|+ +|+.|+|+++.+.|. +|+
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred ccccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 334456789999999999999888 88999988899999999994 789999999998876 544
Q ss_pred -----------cccCCCCCCEEEccCCcccccCCc--cccCCCCCcEEEcCCCcCCccCCccc-CCCCCCcEEEeecccc
Q 048551 87 -----------ELGNLVRLEKLILANNSFSGTIPT--NLSLRSKLMLFFANRNILAGEIPAEI-GNLFKLEKLSFCVIKL 152 (409)
Q Consensus 87 -----------~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l 152 (409)
.++.+++|++|+|++|.+++.+|. .++.+++|++|++++|.+++..|..+ .++++|++|++++|.+
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 556666666677777666666666 66666667777776666666555544 5666666666666666
Q ss_pred cccCCcc---ccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCch
Q 048551 153 TGQLPAS---IQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPP 229 (409)
Q Consensus 153 ~~~~p~~---l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 229 (409)
++..|.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+++.++.+.++++|++|++++|.+++.+|.
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccH
Confidence 6555544 45556666666666665544432 555666666666666665555556666666666666666655555
Q ss_pred HHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh--hcccCcEEecccCCccccccccccCC
Q 048551 230 VIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA--ATSYSQRLNDDDQNHHGRQQNICYLP 307 (409)
Q Consensus 230 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--l~~l~~~L~l~~n~l~~~~~~l~~ip 307 (409)
.+. .+++|++|++++|.+++.+|.. .+++|++|++++|++++.....+. .+++ +.|++++|.+. +.+|
T Consensus 242 ~l~-~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L-~~L~Ls~n~l~------~~~p 311 (768)
T 3rgz_A 242 AIS-TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL-TGLDLSGNHFY------GAVP 311 (768)
T ss_dssp HTT-TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTC-SEEECCSSEEE------ECCC
T ss_pred HHh-cCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcC-CEEECcCCcCC------Cccc
Confidence 555 5666666666666665555443 555566666666655543322111 1333 66666666665 4555
Q ss_pred hhccCCCCCCccc--------------cCCCCCCCEEECcCCccccccchhhhcCC-CCcEEEe-eccceecCCCC-CC-
Q 048551 308 TGISNLVNLDSLA--------------TDSLKSIEELDLSSNNLSGQLPRLLVNLS-FLVLLNL-YNHFDGEVPTK-GV- 369 (409)
Q Consensus 308 ~~~~~l~~L~~L~--------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L-~n~l~~~~p~~-~~- 369 (409)
..++.+++|++|+ +.++++|++|++++|++++.+|..+..++ +|++|++ +|++.+.+|.. ..
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~ 391 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCS
T ss_pred hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhc
Confidence 5555566665555 33455566666666666655555555554 5555555 55555444433 11
Q ss_pred -CCCCCeecccCCCCceecCC
Q 048551 370 -FNNKTRISLAGNGKLCGGFD 389 (409)
Q Consensus 370 -~~~L~~L~l~~Np~l~g~~p 389 (409)
+++|+.|++++| .+.|.+|
T Consensus 392 ~~~~L~~L~L~~n-~l~~~~p 411 (768)
T 3rgz_A 392 PKNTLQELYLQNN-GFTGKIP 411 (768)
T ss_dssp TTCCCCEEECCSS-EEEEECC
T ss_pred ccCCccEEECCCC-ccccccC
Confidence 344444444444 3444443
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-44 Score=340.46 Aligned_cols=294 Identities=29% Similarity=0.494 Sum_probs=218.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC--ceeeecC------CCcEEEecCCCCcc--ccCccccCCCCCCE
Q 048551 27 NANETDRLALLAIKSQLHDPLEVTSSLTNSVNLCE--WTGVTCA------SLRFINIADNGVQG--EIPNELGNLVRLEK 96 (409)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~--~~g~~c~------~l~~L~L~~n~l~~--~~p~~~~~l~~L~~ 96 (409)
.|.++|++||++||+++.+|. .+.+|..+.+||. |.||.|+ ++++|++++|++++ .+|..+.++++|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 588999999999999998876 6789988889998 9999995 46667777777766 66666666666666
Q ss_pred EEccC-CcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCC
Q 048551 97 LILAN-NSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNN 175 (409)
Q Consensus 97 L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 175 (409)
|++++ |.+++.+|..|..+++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..+..+++|++|++++|.
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 66663 66666666666666666666666666655555555555555555555555555555555555555555555555
Q ss_pred CCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCC-CCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccch
Q 048551 176 FGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLS-SLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPD 254 (409)
Q Consensus 176 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~ 254 (409)
+++.+|. .+..++ +|+.|++++|.+++.+|..+. .++ |++|++++|.+++..|.
T Consensus 161 l~~~~p~-----------------------~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l~-L~~L~Ls~N~l~~~~~~ 215 (313)
T 1ogq_A 161 ISGAIPD-----------------------SYGSFSKLFTSMTISRNRLTGKIPPTFA-NLN-LAFVDLSRNMLEGDASV 215 (313)
T ss_dssp CEEECCG-----------------------GGGCCCTTCCEEECCSSEEEEECCGGGG-GCC-CSEEECCSSEEEECCGG
T ss_pred ccCcCCH-----------------------HHhhhhhcCcEEECcCCeeeccCChHHh-CCc-ccEEECcCCcccCcCCH
Confidence 4444443 444554 666666666666666777766 555 88888988888888888
Q ss_pred hhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcC
Q 048551 255 SFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSS 334 (409)
Q Consensus 255 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~ 334 (409)
.+..+++|+.|++++|++++. +|. + ..+++|++|++++
T Consensus 216 ~~~~l~~L~~L~L~~N~l~~~------------------------------~~~-~-----------~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 216 LFGSDKNTQKIHLAKNSLAFD------------------------------LGK-V-----------GLSKNLNGLDLRN 253 (313)
T ss_dssp GCCTTSCCSEEECCSSEECCB------------------------------GGG-C-----------CCCTTCCEEECCS
T ss_pred HHhcCCCCCEEECCCCceeee------------------------------cCc-c-----------cccCCCCEEECcC
Confidence 888999999999999988742 222 2 2347889999999
Q ss_pred CccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCCeecccCCCCceecC
Q 048551 335 NNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGNGKLCGGF 388 (409)
Q Consensus 335 N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~~L~l~~Np~l~g~~ 388 (409)
|++++.+|..+..+++|++|++ +|++++.+|....+++|+.+++++||.+||.+
T Consensus 254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred CcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCC
Confidence 9999999999999999999999 99999999988889999999999999999974
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.3e-44 Score=367.51 Aligned_cols=361 Identities=20% Similarity=0.291 Sum_probs=287.1
Q ss_pred CHHHHHHHHHHHHhCCCC-CCC-------CCCCCCCCCCCCc---eeeecC---CCcEEEecCCCCccccCccccCCCCC
Q 048551 29 NETDRLALLAIKSQLHDP-LEV-------TSSLTNSVNLCEW---TGVTCA---SLRFINIADNGVQGEIPNELGNLVRL 94 (409)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~-~~~-------~~~w~~~~~~c~~---~g~~c~---~l~~L~L~~n~l~~~~p~~~~~l~~L 94 (409)
...|++||.++++++.++ |.. ..+|..+.++|.| .||+|+ +|+.|+|+++++.|.+|+.++++++|
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L 107 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTEL 107 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccc
Confidence 347999999999998544 322 2379988999999 999995 79999999999999999999999999
Q ss_pred CEEEccCCc-----------------------------------------------------------------------
Q 048551 95 EKLILANNS----------------------------------------------------------------------- 103 (409)
Q Consensus 95 ~~L~L~~n~----------------------------------------------------------------------- 103 (409)
++|+|++|.
T Consensus 108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~ 187 (636)
T 4eco_A 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ 187 (636)
T ss_dssp CEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTT
T ss_pred eEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhh
Confidence 999999884
Q ss_pred -------ccccCCccccCCCCCcEEEcCCCcCCcc-----------------CCcccC--CCCCCcEEEeecccccccCC
Q 048551 104 -------FSGTIPTNLSLRSKLMLFFANRNILAGE-----------------IPAEIG--NLFKLEKLSFCVIKLTGQLP 157 (409)
Q Consensus 104 -------l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~p 157 (409)
+++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|
T Consensus 188 l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p 266 (636)
T 4eco_A 188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266 (636)
T ss_dssp TTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC
T ss_pred hccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh
Confidence 344 788899999999999999999985 999998 99999999999999999999
Q ss_pred ccccCCCCCcEEeCCCCC-CCC-CCCCCCCCC------CCCcEEEccCCcCcccCc--ccCCCCCCcEEEeecCcCcccC
Q 048551 158 ASIQNLSSHLEADSNRNN-FGG-KIPESPGQL------RSLFYLNVGGNQFSGMFL--PVYNLSSLEMIYLHDNRLNGNL 227 (409)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~ 227 (409)
..++++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++.++. .+.++++|+.|++++|.++|.+
T Consensus 267 ~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp TTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred HHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccch
Confidence 999999999999999998 888 788777665 899999999999996665 6889999999999999999888
Q ss_pred chHHhhCCCccceeeccccccccccchhhhcCCC-CCEEEcccCcCccccchhhh--hcccCcEEecccCCccccc----
Q 048551 228 PPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASN-RERLELSYNQFRGKSIWRSA--ATSYSQRLNDDDQNHHGRQ---- 300 (409)
Q Consensus 228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~~~~~~--l~~l~~~L~l~~n~l~~~~---- 300 (409)
| .+. .+++|++|++++|+++ .+|..+..+++ |++|++++|+++..+..... +.++ +.|++++|.+.+..
T Consensus 347 p-~~~-~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~l 422 (636)
T 4eco_A 347 P-AFG-SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM-SAIDFSYNEIGSVDGKNF 422 (636)
T ss_dssp C-CCE-EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE-EEEECCSSCTTTTTTCSS
T ss_pred h-hhC-CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc-CEEECcCCcCCCcchhhh
Confidence 8 665 7889999999999988 77888888888 99999999988865421111 2234 77777777776411
Q ss_pred c----------cc----------ccCChhc-cCCCCCCccccCC--------------------CCCCCEEECcCCcccc
Q 048551 301 Q----------NI----------CYLPTGI-SNLVNLDSLATDS--------------------LKSIEELDLSSNNLSG 339 (409)
Q Consensus 301 ~----------~l----------~~ip~~~-~~l~~L~~L~~~~--------------------l~~L~~L~Ls~N~l~~ 339 (409)
. .+ ..+|..+ ..+++|+.|++++ +++|++|++++|+++
T Consensus 423 ~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 501 (636)
T 4eco_A 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT- 501 (636)
T ss_dssp CTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-
T ss_pred cccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-
Confidence 0 11 2455543 3467777777221 127888888888888
Q ss_pred ccchhhh--cCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCC-----CceecCCCCCCCCCC
Q 048551 340 QLPRLLV--NLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNG-----KLCGGFDGLHSPSCH 397 (409)
Q Consensus 340 ~~p~~~~--~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np-----~l~g~~p~~~~~~~~ 397 (409)
.+|..+. .+++|++|++ +|++.+ +|.. ..+++|+.|++++|+ .+.|.+|. .+..|+
T Consensus 502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-~l~~l~ 566 (636)
T 4eco_A 502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCP 566 (636)
T ss_dssp BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT-TGGGCS
T ss_pred ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH-HHhcCC
Confidence 6777776 8888888888 777776 6665 678888888885432 45677775 444443
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.5e-42 Score=360.83 Aligned_cols=321 Identities=28% Similarity=0.448 Sum_probs=258.9
Q ss_pred CCCcEEEecCCCCccccCcc-ccCCCCCCEEEccCCcccccCCccccC---------------------------CCCCc
Q 048551 68 ASLRFINIADNGVQGEIPNE-LGNLVRLEKLILANNSFSGTIPTNLSL---------------------------RSKLM 119 (409)
Q Consensus 68 ~~l~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~---------------------------l~~L~ 119 (409)
.++++|++++|.++|.+|.. +..+++|++|++++|.+++.+|..+.. +++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 36666777776666666654 666666666666666666555554433 45666
Q ss_pred EEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCc
Q 048551 120 LFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQ 199 (409)
Q Consensus 120 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 199 (409)
+|++++|.+++.+|..++.+++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|.
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 477 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc
Confidence 67777777766777778888888888888888888888888888888888888888888888888888888899998888
Q ss_pred CcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccch
Q 048551 200 FSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIW 278 (409)
Q Consensus 200 l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~ 278 (409)
+++..+ .+.++++|+.|++++|++++.+|.+++ .+++|++|++++|++++.+|..+..+++|+.|++++|+++|....
T Consensus 478 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 887777 788888999999999999888888887 788999999999999888898899999999999999988764321
Q ss_pred hhh-----------------------------------------------------------------------hcccCc
Q 048551 279 RSA-----------------------------------------------------------------------ATSYSQ 287 (409)
Q Consensus 279 ~~~-----------------------------------------------------------------------l~~l~~ 287 (409)
.+. +.++ +
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L-~ 635 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM-M 635 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC-C
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc-c
Confidence 100 1223 7
Q ss_pred EEecccCCccccccccccCChhccCCCCCCccc-------------cCCCCCCCEEECcCCccccccchhhhcCCCCcEE
Q 048551 288 RLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLL 354 (409)
Q Consensus 288 ~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 354 (409)
.||+++|+++ +.+|..++.++.|+.|+ ++++++|+.|||++|+++|.+|..+..+++|++|
T Consensus 636 ~LdLs~N~l~------g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 636 FLDMSYNMLS------GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp EEECCSSCCB------SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred EEECcCCccc------ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 8999999998 78999999999999998 5678899999999999999999999999999999
Q ss_pred Ee-eccceecCCCCCCCCCCCeecccCCCCceecCCCCCCCCCCCCC
Q 048551 355 NL-YNHFDGEVPTKGVFNNKTRISLAGNGKLCGGFDGLHSPSCHSKD 400 (409)
Q Consensus 355 ~L-~n~l~~~~p~~~~~~~L~~L~l~~Np~l~g~~p~~~~~~~~~~~ 400 (409)
++ +|+++|.+|..+.+.++....+.|||.+||.+ ++.|....
T Consensus 710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~----l~~C~~~~ 752 (768)
T 3rgz_A 710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP----LPRCDPSN 752 (768)
T ss_dssp ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT----SCCCCSCC
T ss_pred ECcCCcccccCCCchhhccCCHHHhcCCchhcCCC----CcCCCCCc
Confidence 99 99999999988788888889999999999963 35786554
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-41 Score=354.81 Aligned_cols=351 Identities=17% Similarity=0.228 Sum_probs=249.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCC-----CC--CCc------------eeeecC---CCcEEEecCCCCcccc
Q 048551 27 NANETDRLALLAIKSQLHDPLEVTSSLTNSV-----NL--CEW------------TGVTCA---SLRFINIADNGVQGEI 84 (409)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~g~~c~---~l~~L~L~~n~l~~~~ 84 (409)
+...+|++||++||+++.+| +|+.+. ++ |.| .||+|+ +|+.|+|+++++.|.+
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence 34568999999999999776 565433 55 999 999996 7999999999999999
Q ss_pred CccccCCCCCCEEEc-cCCccccc--------------------------------------------------------
Q 048551 85 PNELGNLVRLEKLIL-ANNSFSGT-------------------------------------------------------- 107 (409)
Q Consensus 85 p~~~~~l~~L~~L~L-~~n~l~~~-------------------------------------------------------- 107 (409)
|+.++++++|++|+| ++|.+.|.
T Consensus 340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~ 419 (876)
T 4ecn_A 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419 (876)
T ss_dssp CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence 999999999999999 77755433
Q ss_pred --------------------CCccccCCCCCcEEEcCCCcCCc-----------------cCCcccC--CCCCCcEEEee
Q 048551 108 --------------------IPTNLSLRSKLMLFFANRNILAG-----------------EIPAEIG--NLFKLEKLSFC 148 (409)
Q Consensus 108 --------------------~~~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~~~--~l~~L~~L~L~ 148 (409)
+|..+.++++|++|++++|.+++ .+|..++ ++++|++|+++
T Consensus 420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls 499 (876)
T 4ecn_A 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499 (876)
T ss_dssp CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence 78889999999999999999997 3898887 99999999999
Q ss_pred cccccccCCccccCCCCCcEEeCCCCC-CCC-CCCCCC-------CCCCCCcEEEccCCcCcccCc--ccCCCCCCcEEE
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNN-FGG-KIPESP-------GQLRSLFYLNVGGNQFSGMFL--PVYNLSSLEMIY 217 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~~-------~~l~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~ 217 (409)
+|.+.+.+|..++++++|++|++++|+ +++ .+|..+ ..+++|++|++++|.++.++. .+.++++|+.|+
T Consensus 500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~ 579 (876)
T 4ecn_A 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD 579 (876)
T ss_dssp SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEE
T ss_pred CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEE
Confidence 999999999999999999999999998 887 566533 344478888888887775554 577777777777
Q ss_pred eecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCC-CCEEEcccCcCccccchhhh--h------------
Q 048551 218 LHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASN-RERLELSYNQFRGKSIWRSA--A------------ 282 (409)
Q Consensus 218 l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~~~~~~--l------------ 282 (409)
+++|.++ .+| .+. .+++|+.|++++|.++ .+|..+..+++ |+.|++++|+++..+..... .
T Consensus 580 Ls~N~l~-~lp-~~~-~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 580 CVHNKVR-HLE-AFG-TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp CTTSCCC-BCC-CCC-TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred CCCCCcc-cch-hhc-CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCc
Confidence 7777777 777 554 6777777777777777 66666777776 77777777776644310000 0
Q ss_pred -----------------cccCcEEecccCCccc-------cccc----------cccCChhccC--------CCCCCccc
Q 048551 283 -----------------TSYSQRLNDDDQNHHG-------RQQN----------ICYLPTGISN--------LVNLDSLA 320 (409)
Q Consensus 283 -----------------~~l~~~L~l~~n~l~~-------~~~~----------l~~ip~~~~~--------l~~L~~L~ 320 (409)
.++ +.|++++|.+.. .++. +..+|..+.. +++|+.|+
T Consensus 656 l~g~ip~l~~~l~~~~~~~L-~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 656 IGSEGRNISCSMDDYKGINA-STVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp TTTTSSSCSSCTTTCCCCCE-EEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred CCCccccchhhhccccCCCc-CEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEE
Confidence 012 444444444442 0011 1234433222 12455554
Q ss_pred ------------cC--CCCCCCEEECcCCccccccchhhhcCCCCcEEEe-e------ccceecCCCC-CCCCCCCeecc
Q 048551 321 ------------TD--SLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-Y------NHFDGEVPTK-GVFNNKTRISL 378 (409)
Q Consensus 321 ------------~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~------n~l~~~~p~~-~~~~~L~~L~l 378 (409)
+. .+++|+.|+|++|++++ +|..+..+++|+.|+| + |++.+.+|.. ..+++|+.|++
T Consensus 735 Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L 813 (876)
T 4ecn_A 735 LRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813 (876)
T ss_dssp CCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred CCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence 22 55666666666666664 5666666666776666 4 5556666654 55667777777
Q ss_pred cCCCCceecCCC
Q 048551 379 AGNGKLCGGFDG 390 (409)
Q Consensus 379 ~~Np~l~g~~p~ 390 (409)
++| .+ +.+|.
T Consensus 814 s~N-~L-~~Ip~ 823 (876)
T 4ecn_A 814 GSN-DI-RKVDE 823 (876)
T ss_dssp CSS-CC-CBCCS
T ss_pred CCC-CC-CccCH
Confidence 777 34 66665
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.7e-38 Score=311.05 Aligned_cols=302 Identities=18% Similarity=0.156 Sum_probs=224.9
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccC-CccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTI-PTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
++++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..++++++|++|++
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 6899999999999888999999999999999999997555 567899999999999999999888999999999999999
Q ss_pred ecccccccCCcc--ccCCCCCcEEeCCCCCCCCCCCCC-CCCCCCCcEEEccCCcCcccCc-ccCCC-------------
Q 048551 148 CVIKLTGQLPAS--IQNLSSHLEADSNRNNFGGKIPES-PGQLRSLFYLNVGGNQFSGMFL-PVYNL------------- 210 (409)
Q Consensus 148 ~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~l------------- 210 (409)
++|.+++..|.. +..+++|++|++++|.+.+..|.. +.++++|++|++++|.+++..+ .+..+
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC
Confidence 999998755554 889999999999999999877776 7899999999999999988766 44433
Q ss_pred ---------------------CCCcEEEeecCcCcccCchHHhhC-----------------------------------
Q 048551 211 ---------------------SSLEMIYLHDNRLNGNLPPVIGAK----------------------------------- 234 (409)
Q Consensus 211 ---------------------~~L~~L~l~~n~l~~~~p~~~~~~----------------------------------- 234 (409)
++|+.|++++|.+++.+|..+...
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 270 (455)
T 3v47_A 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270 (455)
T ss_dssp BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG
T ss_pred cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccc
Confidence 456666666666655444443311
Q ss_pred ---CCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCChhc
Q 048551 235 ---LPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGI 310 (409)
Q Consensus 235 ---l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~ 310 (409)
.++|++|++++|.+++..|..+..+++|++|++++|++++.+...+. +.++ +.|++++|.+. +..|..
T Consensus 271 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~------~~~~~~- 342 (455)
T 3v47_A 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL-LKLNLSQNFLG------SIDSRM- 342 (455)
T ss_dssp GGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC-CEEECCSSCCC------EECGGG-
T ss_pred cccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC-CEEECCCCccC------CcChhH-
Confidence 13444444445544444444445555555555555555444322222 2333 45555555444 111222
Q ss_pred cCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCceecC
Q 048551 311 SNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCGGF 388 (409)
Q Consensus 311 ~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g~~ 388 (409)
+.++++|++|++++|++++..|..+..+++|++|++ +|++++..+.. ..+++|+.|++++||.-| ..
T Consensus 343 ----------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~ 411 (455)
T 3v47_A 343 ----------FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC-SC 411 (455)
T ss_dssp ----------GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-CT
T ss_pred ----------hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc-CC
Confidence 456788999999999999888999999999999999 88888655544 678999999999996544 55
Q ss_pred C
Q 048551 389 D 389 (409)
Q Consensus 389 p 389 (409)
|
T Consensus 412 ~ 412 (455)
T 3v47_A 412 P 412 (455)
T ss_dssp T
T ss_pred C
Confidence 5
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.7e-37 Score=304.48 Aligned_cols=299 Identities=17% Similarity=0.140 Sum_probs=239.9
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
++++|++++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 67888888888887777788888888888888888887778888888888888888888885445567888888888888
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccC
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNL 227 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~ 227 (409)
+|.+++..+..+.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+ .+.++++|+.|++++|.+.+..
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~ 192 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence 888887778888888888888888888887778888888888888888888887766 6788888888888888888544
Q ss_pred chHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccC
Q 048551 228 PPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYL 306 (409)
Q Consensus 228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~i 306 (409)
+..+. .+++|++|++++|...+.+|.......+|+.|++++|++++.+...+. ++++ +.|++++|.+. .+
T Consensus 193 ~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~-------~~ 263 (477)
T 2id5_A 193 DYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL-RFLNLSYNPIS-------TI 263 (477)
T ss_dssp TTCSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC-CEEECCSSCCC-------EE
T ss_pred hhhcc-cCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc-CeeECCCCcCC-------cc
Confidence 44454 788888888888887777777666667888888888888876644444 4555 88888888877 33
Q ss_pred ChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCc
Q 048551 307 PTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKL 384 (409)
Q Consensus 307 p~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l 384 (409)
+... |.++++|+.|++++|++++..|..+..+++|++|++ +|++.+..+.. ..+++|+.|++++||..
T Consensus 264 ~~~~----------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 264 EGSM----------LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CTTS----------CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred Chhh----------ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 3321 345678899999999999888889999999999999 77777654443 66788999999999877
Q ss_pred ee
Q 048551 385 CG 386 (409)
Q Consensus 385 ~g 386 (409)
|.
T Consensus 334 c~ 335 (477)
T 2id5_A 334 CD 335 (477)
T ss_dssp CS
T ss_pred Cc
Confidence 64
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.8e-36 Score=308.21 Aligned_cols=312 Identities=16% Similarity=0.125 Sum_probs=210.7
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
.+++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+.+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 78999999999997778899999999999999999998888999999999999999999998888889999999999999
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCc--EEEeecCcCcc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLE--MIYLHDNRLNG 225 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~--~L~l~~n~l~~ 225 (409)
+|.+++..|..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+ .+..+++|+ .|++++|.+++
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~ 193 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCc
Confidence 999997667788999999999999999987544455558999999999998887766 566666666 66666666653
Q ss_pred cCchHH--------------------------------------------------------------------------
Q 048551 226 NLPPVI-------------------------------------------------------------------------- 231 (409)
Q Consensus 226 ~~p~~~-------------------------------------------------------------------------- 231 (409)
..|..+
T Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~ 273 (606)
T 3t6q_A 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273 (606)
T ss_dssp ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT
T ss_pred cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH
Confidence 322211
Q ss_pred hhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCCh-h
Q 048551 232 GAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPT-G 309 (409)
Q Consensus 232 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~-~ 309 (409)
+..+++|++|++++|.++ .+|..+.++++|++|++++|++++.....+. ++++ +.|++++|.+. +.+|. .
T Consensus 274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~~~------~~~~~~~ 345 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL-THLSIKGNTKR------LELGTGC 345 (606)
T ss_dssp TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTC-SEEECCSCSSC------CBCCSST
T ss_pred hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcC-CEEECCCCCcc------cccchhh
Confidence 124555666666666655 4555556666666666666666554322222 3333 56666666554 23332 2
Q ss_pred ccCCCCCCccc---------------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC--CCCC
Q 048551 310 ISNLVNLDSLA---------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK--GVFN 371 (409)
Q Consensus 310 ~~~l~~L~~L~---------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~--~~~~ 371 (409)
+..+++|++|+ +.++++|++|++++|++++..|..+..+++|++|++ +|.+.+..+.. ..++
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 44444554444 234455555555555555555555555555555555 45554443322 3445
Q ss_pred CCCeecccCCCCceecCC
Q 048551 372 NKTRISLAGNGKLCGGFD 389 (409)
Q Consensus 372 ~L~~L~l~~Np~l~g~~p 389 (409)
+|+.|++++| .+.+.+|
T Consensus 426 ~L~~L~l~~n-~l~~~~~ 442 (606)
T 3t6q_A 426 LLKVLNLSHS-LLDISSE 442 (606)
T ss_dssp TCCEEECTTC-CCBTTCT
T ss_pred cCCEEECCCC-ccCCcCH
Confidence 5555555555 3443333
No 9
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.2e-37 Score=309.34 Aligned_cols=307 Identities=17% Similarity=0.130 Sum_probs=178.5
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
++++|++++|++++..|..|..+++|++|++++|++++..|..|..+++|++|++++|.+++..|..++.+++|++|+++
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 45666666666665555556666666666666666665555556666666666666666664444445566666666666
Q ss_pred cccccc-cCCccccCCCCCcEEeCCCCCCCCCCC-CCCCCCCCCcEEEccCCcCcccCc-ccCC----------------
Q 048551 149 VIKLTG-QLPASIQNLSSHLEADSNRNNFGGKIP-ESPGQLRSLFYLNVGGNQFSGMFL-PVYN---------------- 209 (409)
Q Consensus 149 ~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~---------------- 209 (409)
+|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..+ .+..
T Consensus 107 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 186 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186 (549)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT
T ss_pred CCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccc
Confidence 665553 234445555555555555555222222 344445555555555554444332 2221
Q ss_pred --------CCCCcEEEeecCcCcc--------------------------------------------------------
Q 048551 210 --------LSSLEMIYLHDNRLNG-------------------------------------------------------- 225 (409)
Q Consensus 210 --------l~~L~~L~l~~n~l~~-------------------------------------------------------- 225 (409)
+++|+.|++++|.+++
T Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~ 266 (549)
T 2z81_A 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266 (549)
T ss_dssp HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECC
T ss_pred cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccc
Confidence 2333333333333321
Q ss_pred ---------------------------------------------------------cCchHHhhCCCccceeecccccc
Q 048551 226 ---------------------------------------------------------NLPPVIGAKLPNLRKIVIALNNF 248 (409)
Q Consensus 226 ---------------------------------------------------------~~p~~~~~~l~~L~~L~L~~n~l 248 (409)
.+|..++..+++|++|++++|++
T Consensus 267 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l 346 (549)
T 2z81_A 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346 (549)
T ss_dssp SCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCC
T ss_pred ccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcc
Confidence 34444433566777777777777
Q ss_pred ccccch---hhhcCCCCCEEEcccCcCccccc--hhhh-hcccCcEEecccCCccccccccccCChhccCCCCCCcccc-
Q 048551 249 TGPLPD---SFSNASNRERLELSYNQFRGKSI--WRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLAT- 321 (409)
Q Consensus 249 ~~~~p~---~l~~l~~L~~L~Ls~N~l~~~~~--~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~- 321 (409)
++.+|. .++.+++|++|++++|++++.+. ..+. ++++ +.|++++|.++ .+|..+..+++|++|++
T Consensus 347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-------~lp~~~~~~~~L~~L~Ls 418 (549)
T 2z81_A 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL-TSLDISRNTFH-------PMPDSCQWPEKMRFLNLS 418 (549)
T ss_dssp CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC-CEEECTTCCCC-------CCCSCCCCCTTCCEEECT
T ss_pred ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC-CEEECCCCCCc-------cCChhhcccccccEEECC
Confidence 665543 25666777777777777766542 1122 4445 77777777776 56665555555555552
Q ss_pred -----------------------------CCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCC
Q 048551 322 -----------------------------DSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVF 370 (409)
Q Consensus 322 -----------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~ 370 (409)
..+++|++|++++|+|+ .+|. ...+++|++|++ +|++++..|.. ..+
T Consensus 419 ~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 496 (549)
T 2z81_A 419 STGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRL 496 (549)
T ss_dssp TSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGC
T ss_pred CCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcC
Confidence 24667777777777777 4555 356778888888 77777766654 667
Q ss_pred CCCCeecccCCCCce
Q 048551 371 NNKTRISLAGNGKLC 385 (409)
Q Consensus 371 ~~L~~L~l~~Np~l~ 385 (409)
++|+.|++++||+.|
T Consensus 497 ~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 497 TSLQKIWLHTNPWDC 511 (549)
T ss_dssp TTCCEEECCSSCBCC
T ss_pred cccCEEEecCCCccC
Confidence 888888888887665
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-37 Score=319.04 Aligned_cols=226 Identities=19% Similarity=0.214 Sum_probs=183.0
Q ss_pred cCCCcEEEecCCCCccc-----------------cCcccc--CCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCc
Q 048551 67 CASLRFINIADNGVQGE-----------------IPNELG--NLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI 127 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 127 (409)
+.++++|+|++|.+++. +|..++ ++++|++|++++|.+.+.+|..+.++++|++|++++|+
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 34899999999999985 999999 99999999999999999999999999999999999998
Q ss_pred -CCc-cCCcccCCC------CCCcEEEeecccccccCCc--cccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccC
Q 048551 128 -LAG-EIPAEIGNL------FKLEKLSFCVIKLTGQLPA--SIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGG 197 (409)
Q Consensus 128 -l~~-~~p~~~~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 197 (409)
+++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|++|++++|.+.|.+| .+..+++|++|++++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 988 788888776 89999999999998 8888 89999999999999999988888 788888888888888
Q ss_pred CcCcccCcccCCCCC-CcEEEeecCcCcccCchHHhhCC--Cccceeeccccccccccchhhh-------cCCCCCEEEc
Q 048551 198 NQFSGMFLPVYNLSS-LEMIYLHDNRLNGNLPPVIGAKL--PNLRKIVIALNNFTGPLPDSFS-------NASNRERLEL 267 (409)
Q Consensus 198 n~l~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~-------~l~~L~~L~L 267 (409)
|.++..+..+.++++ |+.|++++|.++ .+|..+. .+ ++|++|++++|.+++..|..+. .+++|++|++
T Consensus 363 N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 363 NQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp SEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCC-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred CccccccHhhhhhcccCcEEEccCCcCc-ccchhhh-hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 888855447778888 888888888887 7776654 33 3677777777777777776666 5667777777
Q ss_pred ccCcCccccchhhh-hcccCcEEecccCCcc
Q 048551 268 SYNQFRGKSIWRSA-ATSYSQRLNDDDQNHH 297 (409)
Q Consensus 268 s~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~ 297 (409)
++|++++.+...+. ++++ +.|++++|.++
T Consensus 441 s~N~l~~lp~~~~~~l~~L-~~L~Ls~N~l~ 470 (636)
T 4eco_A 441 SNNQISKFPKELFSTGSPL-SSINLMGNMLT 470 (636)
T ss_dssp CSSCCCSCCTHHHHTTCCC-SEEECCSSCCS
T ss_pred cCCccCcCCHHHHccCCCC-CEEECCCCCCC
Confidence 77777655433333 3444 66666666665
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-35 Score=300.62 Aligned_cols=315 Identities=19% Similarity=0.163 Sum_probs=197.2
Q ss_pred CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
.++++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..++++++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 36666666666666555666666666666666666666555666666666666666666666444455666666666666
Q ss_pred ecccccc-cCCccccCCCCCcEEeCCCCCCCCCCCCCCC-----------------------------------------
Q 048551 148 CVIKLTG-QLPASIQNLSSHLEADSNRNNFGGKIPESPG----------------------------------------- 185 (409)
Q Consensus 148 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~----------------------------------------- 185 (409)
++|.+++ .+|..++++++|++|++++|.+++..+..++
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCc
Confidence 6666654 3566666666666666666665543332221
Q ss_pred --------------------------------------------------------------------------------
Q 048551 186 -------------------------------------------------------------------------------- 185 (409)
Q Consensus 186 -------------------------------------------------------------------------------- 185 (409)
T Consensus 216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 295 (606)
T 3vq2_A 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295 (606)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESC
T ss_pred cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCc
Confidence
Q ss_pred ---------CCCCCcEEEccCCcCcccC-------------------c-ccCCCCCCcEEEeecCcCccc--CchHHhhC
Q 048551 186 ---------QLRSLFYLNVGGNQFSGMF-------------------L-PVYNLSSLEMIYLHDNRLNGN--LPPVIGAK 234 (409)
Q Consensus 186 ---------~l~~L~~L~l~~n~l~~~~-------------------~-~~~~l~~L~~L~l~~n~l~~~--~p~~~~~~ 234 (409)
.+++|++|++++|.+...+ . .+..+++|+.|++++|.+++. +|..+. .
T Consensus 296 ~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~ 374 (606)
T 3vq2_A 296 SIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL-G 374 (606)
T ss_dssp CCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH-C
T ss_pred cchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc-c
Confidence 1112222222222221110 0 223456677777777777643 356665 7
Q ss_pred CCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccc-hhhh-hcccCcEEecccCCcccc-------cccc--
Q 048551 235 LPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSI-WRSA-ATSYSQRLNDDDQNHHGR-------QQNI-- 303 (409)
Q Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~-l~~l~~~L~l~~n~l~~~-------~~~l-- 303 (409)
+++|++|++++|.+++ +|..+..+++|+.|++++|++.+... ..+. ++++ +.|++++|.+.+. ++.+
T Consensus 375 ~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYLDISYTNTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp CSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred CCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC-CEEECcCCCCCccchhhhcCCCCCCE
Confidence 7778888888777763 45666777777777777777766542 2222 3344 5666666655431 0111
Q ss_pred ---------c-cCChhccCCCCCCccc-------------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-ecc
Q 048551 304 ---------C-YLPTGISNLVNLDSLA-------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNH 359 (409)
Q Consensus 304 ---------~-~ip~~~~~l~~L~~L~-------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~ 359 (409)
+ .+|..+..+++|+.|+ +.++++|++|++++|++++..|..+..+++|++|++ +|+
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 2 2566677778888777 556788888888888888877888888888888888 777
Q ss_pred ceecCCCC-CCCC-CCCeecccCCCCcee
Q 048551 360 FDGEVPTK-GVFN-NKTRISLAGNGKLCG 386 (409)
Q Consensus 360 l~~~~p~~-~~~~-~L~~L~l~~Np~l~g 386 (409)
++ .+|.. ..++ +|+.+++++||+.|+
T Consensus 533 l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 533 IE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp CC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred Cc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 76 45554 5565 588899999988773
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-35 Score=301.81 Aligned_cols=137 Identities=18% Similarity=0.129 Sum_probs=128.0
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
++++|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 79999999999998888899999999999999999998889999999999999999999998779999999999999999
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCC-CCCCCCCCCCCCcEEEccCCcCcccCc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGG-KIPESPGQLRSLFYLNVGGNQFSGMFL 205 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~ 205 (409)
+|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+
T Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred CCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 999997776889999999999999999986 578999999999999999999887655
No 13
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-34 Score=295.13 Aligned_cols=109 Identities=17% Similarity=0.074 Sum_probs=63.3
Q ss_pred CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
.+|++|++++|++++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++.+++|++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 36677777777776666666777777777777777666666666666666666666666666443444555555555555
Q ss_pred ecccccccCCccccCCCCCcEEeCCCCCC
Q 048551 148 CVIKLTGQLPASIQNLSSHLEADSNRNNF 176 (409)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 176 (409)
++|.+++..+..+..+++|++|++++|.+
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred CCCcccccCcccccCCcccCEEEcccCcc
Confidence 55555532222222244444444444433
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-34 Score=299.36 Aligned_cols=227 Identities=15% Similarity=0.136 Sum_probs=172.6
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
++++|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|+.+++|++|+++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence 78999999999997666779999999999999999998888889999999999999999985444568999999999999
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-c--cCCCCCCcEEEeecCcCcc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-P--VYNLSSLEMIYLHDNRLNG 225 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~--~~~l~~L~~L~l~~n~l~~ 225 (409)
+|.+++..|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+++..+ . ...+++|+.|++++|.+++
T Consensus 106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 185 (680)
T 1ziw_A 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185 (680)
T ss_dssp SSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred CCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence 999987667789999999999999999998888888899999999999999888766 3 3356788888888888875
Q ss_pred cCchHHhhCC---------------------------CccceeeccccccccccchhhhcCCC--CCEEEcccCcCcccc
Q 048551 226 NLPPVIGAKL---------------------------PNLRKIVIALNNFTGPLPDSFSNASN--RERLELSYNQFRGKS 276 (409)
Q Consensus 226 ~~p~~~~~~l---------------------------~~L~~L~L~~n~l~~~~p~~l~~l~~--L~~L~Ls~N~l~~~~ 276 (409)
..|..+. .+ ++|++|++++|.+++..|..+..++. |++|++++|++++.+
T Consensus 186 ~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 186 FSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp BCTTGGG-GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred cChhhhh-hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 5444332 22 34555666666666555555555533 666666666666554
Q ss_pred chhhh-hcccCcEEecccCCcc
Q 048551 277 IWRSA-ATSYSQRLNDDDQNHH 297 (409)
Q Consensus 277 ~~~~~-l~~l~~~L~l~~n~l~ 297 (409)
...+. ++++ +.|++++|.+.
T Consensus 265 ~~~~~~l~~L-~~L~L~~n~l~ 285 (680)
T 1ziw_A 265 NDSFAWLPQL-EYFFLEYNNIQ 285 (680)
T ss_dssp TTTTTTCTTC-CEEECCSCCBS
T ss_pred cccccCcccc-cEeeCCCCccC
Confidence 33333 3333 56666666555
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.5e-34 Score=294.80 Aligned_cols=317 Identities=14% Similarity=0.077 Sum_probs=243.4
Q ss_pred CCCCCCCCCCCCCCC----ceeeecC--------------------CCcEEEecCCCCccccCccccCCCCCCEEEccCC
Q 048551 47 LEVTSSLTNSVNLCE----WTGVTCA--------------------SLRFINIADNGVQGEIPNELGNLVRLEKLILANN 102 (409)
Q Consensus 47 ~~~~~~w~~~~~~c~----~~g~~c~--------------------~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 102 (409)
+..+++|.++.+||. |.++.|+ +++.+++++|.+....+..+..+++|++|++++|
T Consensus 6 ~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n 85 (597)
T 3oja_B 6 RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85 (597)
T ss_dssp -----CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS
T ss_pred cccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC
Confidence 345677887766663 6554443 6789999999999555556889999999999999
Q ss_pred cccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCC
Q 048551 103 SFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPE 182 (409)
Q Consensus 103 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~ 182 (409)
.+++..|..|..+++|++|++++|.+++..|..|+.+++|++|++++|.+++..+..|.++++|++|++++|.+.+..|.
T Consensus 86 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 165 (597)
T 3oja_B 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165 (597)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh
Confidence 99988888999999999999999999987778899999999999999999955555579999999999999999988888
Q ss_pred CCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCC
Q 048551 183 SPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNR 262 (409)
Q Consensus 183 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (409)
.+.++++|++|++++|.+++.. +..+++|+.|++++|.+++ ++ ..++|+.|++++|.++...+ .+ .++|
T Consensus 166 ~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~-l~-----~~~~L~~L~ls~n~l~~~~~-~~--~~~L 234 (597)
T 3oja_B 166 TFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST-LA-----IPIAVEELDASHNSINVVRG-PV--NVEL 234 (597)
T ss_dssp TTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE-EE-----CCTTCSEEECCSSCCCEEEC-SC--CSCC
T ss_pred hhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc-cc-----CCchhheeeccCCccccccc-cc--CCCC
Confidence 9999999999999999998763 4566778888888887763 21 34556677777776663322 21 2466
Q ss_pred CEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCChhccCCCCCCccc------------cCCCCCCCE
Q 048551 263 ERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA------------TDSLKSIEE 329 (409)
Q Consensus 263 ~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~------------~~~l~~L~~ 329 (409)
+.|++++|.+++.. .+. ++++ +.|++++|.+. +..|..+..+++|+.|+ +..+++|+.
T Consensus 235 ~~L~L~~n~l~~~~--~l~~l~~L-~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~ 305 (597)
T 3oja_B 235 TILKLQHNNLTDTA--WLLNYPGL-VEVDLSYNELE------KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV 305 (597)
T ss_dssp CEEECCSSCCCCCG--GGGGCTTC-SEEECCSSCCC------EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCE
T ss_pred CEEECCCCCCCCCh--hhccCCCC-CEEECCCCccC------CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcE
Confidence 66666666666542 111 3334 66666666666 44555666666666666 234789999
Q ss_pred EECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCCeecccCCCCcee
Q 048551 330 LDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGNGKLCG 386 (409)
Q Consensus 330 L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~~L~l~~Np~l~g 386 (409)
|+|++|+++ .+|..+..+++|++|++ +|++.+..+ ..+++|+.|++++||+-|.
T Consensus 306 L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKL--STHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCC--CTTCCCSEEECCSSCEEHH
T ss_pred EECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcCh--hhcCCCCEEEeeCCCCCCh
Confidence 999999999 68888999999999999 888875532 4789999999999987664
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.8e-34 Score=279.06 Aligned_cols=295 Identities=14% Similarity=0.097 Sum_probs=229.4
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
+++.++++++.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++.+++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 78999999999984444457899999999999999998777899999999999999999997777889999999999999
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP 228 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p 228 (409)
+|.++...+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+++. .+..+++|+.+++++|.+++ ++
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~-~~ 202 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST-LA 202 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSE-EE
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccc-cC
Confidence 9999944444468999999999999999988888899999999999999999876 34566777777777777762 21
Q ss_pred hHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCC
Q 048551 229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLP 307 (409)
Q Consensus 229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip 307 (409)
..++|++|++++|.++.. |.. ..++|+.|++++|++++.. .+. ++++ +.|++++|.+. +..|
T Consensus 203 -----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~~--~l~~l~~L-~~L~Ls~n~l~------~~~~ 265 (390)
T 3o6n_A 203 -----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDTA--WLLNYPGL-VEVDLSYNELE------KIMY 265 (390)
T ss_dssp -----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCCG--GGGGCTTC-SEEECCSSCCC------EEES
T ss_pred -----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCcccH--HHcCCCCc-cEEECCCCcCC------CcCh
Confidence 335566666666666633 322 2356666666666666542 111 3333 66666666666 3445
Q ss_pred hhccCCCCCCccc------------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCC
Q 048551 308 TGISNLVNLDSLA------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKT 374 (409)
Q Consensus 308 ~~~~~l~~L~~L~------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~ 374 (409)
..+..+++|+.|+ +..+++|++|++++|+++ .+|..+..+++|++|++ +|.+++. + ...+++|+
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~~~~L~ 342 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LSTHHTLK 342 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCTTCCCS
T ss_pred hHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-chhhccCC
Confidence 5566666666666 335789999999999999 67888899999999999 8887654 3 25789999
Q ss_pred eecccCCCCcee
Q 048551 375 RISLAGNGKLCG 386 (409)
Q Consensus 375 ~L~l~~Np~l~g 386 (409)
.|++++||+-|.
T Consensus 343 ~L~l~~N~~~~~ 354 (390)
T 3o6n_A 343 NLTLSHNDWDCN 354 (390)
T ss_dssp EEECCSSCEEHH
T ss_pred EEEcCCCCccch
Confidence 999999987773
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5e-35 Score=293.54 Aligned_cols=144 Identities=26% Similarity=0.284 Sum_probs=118.7
Q ss_pred CCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccc--hhhh-hcccCcEEecccCCccccccccccCChh-
Q 048551 234 KLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSI--WRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTG- 309 (409)
Q Consensus 234 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~- 309 (409)
.+++|++|++++|.+++..|..+..+++|++|++++|++++.+. ..+. ++++ +.|++++|.+. +.+|..
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~------~~l~~~~ 394 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNSVS------YDEKKGD 394 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSCCB------CCGGGCS
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCcCC------cccccch
Confidence 67889999999999998888899999999999999999987542 2233 5566 99999999998 447764
Q ss_pred ccCCCCCCccccCC----------C-CCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC--CCCCCCCe
Q 048551 310 ISNLVNLDSLATDS----------L-KSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK--GVFNNKTR 375 (409)
Q Consensus 310 ~~~l~~L~~L~~~~----------l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~--~~~~~L~~ 375 (409)
+..+++|+.|++++ + ++|++|++++|+|+ .+|..+..+++|++|++ +|+++ .+|.. ..+++|+.
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQK 472 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred hccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccE
Confidence 67788888888443 2 69999999999999 78888889999999999 88887 46653 67899999
Q ss_pred ecccCCCCcee
Q 048551 376 ISLAGNGKLCG 386 (409)
Q Consensus 376 L~l~~Np~l~g 386 (409)
|++++||.-|.
T Consensus 473 L~l~~N~~~c~ 483 (520)
T 2z7x_B 473 IWLHTNPWDCS 483 (520)
T ss_dssp EECCSSCBCCC
T ss_pred EECcCCCCccc
Confidence 99999987773
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.3e-35 Score=306.35 Aligned_cols=303 Identities=18% Similarity=0.189 Sum_probs=236.2
Q ss_pred cCCCcEEEecCCCCcc-----------------ccCcccc--CCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCc
Q 048551 67 CASLRFINIADNGVQG-----------------EIPNELG--NLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI 127 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 127 (409)
+.+|++|+|++|.+++ .+|..++ ++++|++|+|++|.+.+.+|..|.++++|++|++++|+
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 3489999999999998 3888887 99999999999999999999999999999999999998
Q ss_pred -CCc-cCCcccCCC-------CCCcEEEeecccccccCCc--cccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEcc
Q 048551 128 -LAG-EIPAEIGNL-------FKLEKLSFCVIKLTGQLPA--SIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVG 196 (409)
Q Consensus 128 -l~~-~~p~~~~~l-------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 196 (409)
+++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|++|++++|.++ .+| .++.+++|++|+++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLD 603 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECc
Confidence 887 777655544 48999999999888 7887 8888888888888888888 777 78888888888888
Q ss_pred CCcCcccCcccCCCCC-CcEEEeecCcCcccCchHHhhCCC-------------------------------ccceeecc
Q 048551 197 GNQFSGMFLPVYNLSS-LEMIYLHDNRLNGNLPPVIGAKLP-------------------------------NLRKIVIA 244 (409)
Q Consensus 197 ~n~l~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~~l~-------------------------------~L~~L~L~ 244 (409)
+|.++..+..+.++++ |+.|++++|.++ .+|..+. .++ +|+.|+++
T Consensus 604 ~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~-~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls 681 (876)
T 4ecn_A 604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLS 681 (876)
T ss_dssp SSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCC-TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECC
T ss_pred CCccccchHHHhhccccCCEEECcCCCCC-cCchhhh-ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEcc
Confidence 8888854447777777 888888888777 6665443 222 44455555
Q ss_pred ccccccccchh-hhcCCCCCEEEcccCcCccccchhhh-h-------cccCcEEecccCCccccccccccCChhcc--CC
Q 048551 245 LNNFTGPLPDS-FSNASNRERLELSYNQFRGKSIWRSA-A-------TSYSQRLNDDDQNHHGRQQNICYLPTGIS--NL 313 (409)
Q Consensus 245 ~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~-l-------~~l~~~L~l~~n~l~~~~~~l~~ip~~~~--~l 313 (409)
+|.++ .+|.. +..+++|+.|++++|+++..+...+. . +++ +.|++++|+++ .+|..+. .+
T Consensus 682 ~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L-~~L~Ls~N~L~-------~lp~~l~~~~l 752 (876)
T 4ecn_A 682 YNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL-TTIDLRFNKLT-------SLSDDFRATTL 752 (876)
T ss_dssp SSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGC-CEEECCSSCCC-------CCCGGGSTTTC
T ss_pred CCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCc-cEEECCCCCCc-------cchHHhhhccC
Confidence 55554 23333 23566777777777777654432222 1 144 77788877776 7888887 89
Q ss_pred CCCCccc------------cCCCCCCCEEECcC------CccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCC
Q 048551 314 VNLDSLA------------TDSLKSIEELDLSS------NNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKT 374 (409)
Q Consensus 314 ~~L~~L~------------~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~ 374 (409)
++|+.|+ +.++++|+.|+|++ |++.+.+|..+.++++|++|+| +|++ +.+|.. ..++|+
T Consensus 753 ~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~ 830 (876)
T 4ecn_A 753 PYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLY 830 (876)
T ss_dssp TTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSC
T ss_pred CCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCC
Confidence 9999998 44678999999976 8888899999999999999999 7888 888885 447999
Q ss_pred eecccCCCCce
Q 048551 375 RISLAGNGKLC 385 (409)
Q Consensus 375 ~L~l~~Np~l~ 385 (409)
.|++++||...
T Consensus 831 ~LdLs~N~l~~ 841 (876)
T 4ecn_A 831 ILDIADNPNIS 841 (876)
T ss_dssp EEECCSCTTCE
T ss_pred EEECCCCCCCc
Confidence 99999998654
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.3e-34 Score=283.79 Aligned_cols=307 Identities=18% Similarity=0.150 Sum_probs=245.0
Q ss_pred cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccC-CcccCCCCCCcEEEeec
Q 048551 71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEI-PAEIGNLFKLEKLSFCV 149 (409)
Q Consensus 71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~L~~ 149 (409)
+.++.++++++ .+|. +. ++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|..+++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 45666778887 6776 33 78999999999999888999999999999999999997555 56799999999999999
Q ss_pred ccccccCCccccCCCCCcEEeCCCCCCCCCCCC--CCCCCCCCcEEEccCCcCcccCc-c-cCCCCCCcEEEeecCcCcc
Q 048551 150 IKLTGQLPASIQNLSSHLEADSNRNNFGGKIPE--SPGQLRSLFYLNVGGNQFSGMFL-P-VYNLSSLEMIYLHDNRLNG 225 (409)
Q Consensus 150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~-~~~l~~L~~L~l~~n~l~~ 225 (409)
|.+++..|..+.++++|++|++++|.+++..+. .+..+++|++|++++|.+++..+ . +.++++|++|++++|.+++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 999988899999999999999999999875544 48999999999999999999876 4 8899999999999999997
Q ss_pred cCchHHhhCC--Cccceeeccccccccccchh--------hhcCCCCCEEEcccCcCccccchhhh--------------
Q 048551 226 NLPPVIGAKL--PNLRKIVIALNNFTGPLPDS--------FSNASNRERLELSYNQFRGKSIWRSA-------------- 281 (409)
Q Consensus 226 ~~p~~~~~~l--~~L~~L~L~~n~l~~~~p~~--------l~~l~~L~~L~Ls~N~l~~~~~~~~~-------------- 281 (409)
..+..+. .+ .+|+.|++++|.+.+..+.. +..+++|++|++++|++++.....+.
T Consensus 169 ~~~~~l~-~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 169 ICEEDLL-NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCTTTSG-GGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred cChhhhh-ccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 6666554 33 45666666666665433222 12345566666666655543211110
Q ss_pred --------------------------hcccCcEEecccCCccccccccccCChhccCCCCCCccc-------------cC
Q 048551 282 --------------------------ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-------------TD 322 (409)
Q Consensus 282 --------------------------l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-------------~~ 322 (409)
..++ +.|++++|.+. +.+|..+..+++|+.|+ |.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 320 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGV-KTCDLSKSKIF------ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCC-CEEECCSSCCC------EECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred cccccccccchhhhccCcccccccccccCc-eEEEecCcccc------ccchhhcccCCCCCEEECCCCcccccChhHhc
Confidence 1233 78888888887 56677788888888888 56
Q ss_pred CCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCceecCCC
Q 048551 323 SLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCGGFDG 390 (409)
Q Consensus 323 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g~~p~ 390 (409)
++++|++|++++|++++..|..+..+++|++|++ +|++.+..|.. ..+++|+.|++++| .+.+..+.
T Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 389 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDG 389 (455)
T ss_dssp TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTT
T ss_pred CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHh
Confidence 7899999999999999888999999999999999 89998887865 78999999999999 67765443
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-34 Score=292.85 Aligned_cols=303 Identities=15% Similarity=0.116 Sum_probs=246.3
Q ss_pred CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
.++++|++++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 48999999999999777789999999999999999999888899999999999999999999 67766 7999999999
Q ss_pred ecccccc-cCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCC--cEEEccCCcC--cccCc-ccCCC-----------
Q 048551 148 CVIKLTG-QLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSL--FYLNVGGNQF--SGMFL-PVYNL----------- 210 (409)
Q Consensus 148 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~-~~~~l----------- 210 (409)
++|++++ ..|..++++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..+ .+..+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999986 3468899999999999999998753 45555566 8888888877 44333 22221
Q ss_pred ----------------------------------------------------------------------CCCcEEEeec
Q 048551 211 ----------------------------------------------------------------------SSLEMIYLHD 220 (409)
Q Consensus 211 ----------------------------------------------------------------------~~L~~L~l~~ 220 (409)
++|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 1677777777
Q ss_pred CcCcccCchHHh----------------------------------------------------hCCCccceeecccccc
Q 048551 221 NRLNGNLPPVIG----------------------------------------------------AKLPNLRKIVIALNNF 248 (409)
Q Consensus 221 n~l~~~~p~~~~----------------------------------------------------~~l~~L~~L~L~~n~l 248 (409)
|.++|.+|..++ ..+++|++|++++|.+
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence 777766665431 3678899999999999
Q ss_pred ccccchhhhcCCCCCEEEcccCcCccccc--hhhh-hcccCcEEecccCCccccccccccCChh-ccCCCCCCccccC--
Q 048551 249 TGPLPDSFSNASNRERLELSYNQFRGKSI--WRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTG-ISNLVNLDSLATD-- 322 (409)
Q Consensus 249 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~--~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~-~~~l~~L~~L~~~-- 322 (409)
++..|..+.++++|++|++++|++++.+. ..+. ++++ +.|++++|.+. +.+|.. +..+++|+.|+++
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l~------~~~~~~~~~~l~~L~~L~l~~n 438 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSLN------SHAYDRTCAWAESILVLNLSSN 438 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCCB------SCCSSCCCCCCTTCCEEECCSS
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcCC------CccChhhhcCcccCCEEECCCC
Confidence 98889999999999999999999998652 2233 5566 99999999998 447654 6677888888843
Q ss_pred --------CC-CCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC--CCCCCCCeecccCCCCce
Q 048551 323 --------SL-KSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK--GVFNNKTRISLAGNGKLC 385 (409)
Q Consensus 323 --------~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~--~~~~~L~~L~l~~Np~l~ 385 (409)
.+ ++|++|++++|+|+ .+|..+..+++|++|++ +|+++ .+|.. ..+++|+.|++++||+.|
T Consensus 439 ~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 439 MLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 23 69999999999999 67887779999999999 88887 45553 778999999999999877
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=3e-35 Score=277.88 Aligned_cols=271 Identities=20% Similarity=0.240 Sum_probs=213.9
Q ss_pred CCHHHHHHHHHHHHhC-CCCCCCCCCC----CCCCCCCCceeeec------------CCCcEEEecCCCCccccCccccC
Q 048551 28 ANETDRLALLAIKSQL-HDPLEVTSSL----TNSVNLCEWTGVTC------------ASLRFINIADNGVQGEIPNELGN 90 (409)
Q Consensus 28 ~~~~~~~~l~~~~~~~-~~~~~~~~~w----~~~~~~c~~~g~~c------------~~l~~L~L~~n~l~~~~p~~~~~ 90 (409)
+..+++++|+.||+++ .++......| ....++|.|.|+.| .+++.|++++|+++ .+|..+..
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~ 102 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFR 102 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhh
Confidence 4568899999999988 5776666788 45678999999999 37888888888888 77777888
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEe
Q 048551 91 LVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEAD 170 (409)
Q Consensus 91 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (409)
+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|++.+.+|..+...
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~------- 173 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST------- 173 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE-------
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc-------
Confidence 888888888888888 77877888888888888888887 677778888888888888877777777655431
Q ss_pred CCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccccccc
Q 048551 171 SNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTG 250 (409)
Q Consensus 171 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 250 (409)
..+..+.++++|++|++++|.++..+..+.++++|++|++++|.++ .+|..+. .+++|++|++++|.+.+
T Consensus 174 --------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~-~l~~L~~L~Ls~n~~~~ 243 (328)
T 4fcg_A 174 --------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEELDLRGCTALR 243 (328)
T ss_dssp --------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGG-GCTTCCEEECTTCTTCC
T ss_pred --------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhc-cCCCCCEEECcCCcchh
Confidence 1122345678888888888888755447788888888888888888 5777776 78889999999988888
Q ss_pred ccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEE
Q 048551 251 PLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEEL 330 (409)
Q Consensus 251 ~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L 330 (409)
.+|..+..+++|++|++++|++.+ .+|..+.. +++|++|
T Consensus 244 ~~p~~~~~l~~L~~L~L~~n~~~~------------------------------~~p~~~~~-----------l~~L~~L 282 (328)
T 4fcg_A 244 NYPPIFGGRAPLKRLILKDCSNLL------------------------------TLPLDIHR-----------LTQLEKL 282 (328)
T ss_dssp BCCCCTTCCCCCCEEECTTCTTCC------------------------------BCCTTGGG-----------CTTCCEE
T ss_pred hhHHHhcCCCCCCEEECCCCCchh------------------------------hcchhhhc-----------CCCCCEE
Confidence 888888888999999998887763 56665543 4667889
Q ss_pred ECcCCccccccchhhhcCCCCcEEEeecc
Q 048551 331 DLSSNNLSGQLPRLLVNLSFLVLLNLYNH 359 (409)
Q Consensus 331 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~n~ 359 (409)
++++|++.+.+|..+.++++|+.+++..+
T Consensus 283 ~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred eCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 99998888889999999999999988333
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=280.42 Aligned_cols=296 Identities=20% Similarity=0.137 Sum_probs=256.5
Q ss_pred cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551 71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI 150 (409)
Q Consensus 71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 150 (409)
+.++.++++++ .+|..+. +++++|+|++|.+++..+..|..+++|++|++++|.+++..|..|+++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 56677778888 7787664 68999999999999888899999999999999999999888999999999999999999
Q ss_pred cccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCch
Q 048551 151 KLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPP 229 (409)
Q Consensus 151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~ 229 (409)
.++...+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+.+..+ .+.++++|+.|++++|.++ .++.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccCh
Confidence 9996555678999999999999999998889999999999999999999999877 8899999999999999999 5555
Q ss_pred HHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchh-hhhcccCcEEecccCCccccccccccCCh
Q 048551 230 VIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWR-SAATSYSQRLNDDDQNHHGRQQNICYLPT 308 (409)
Q Consensus 230 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~l~~~L~l~~n~l~~~~~~l~~ip~ 308 (409)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..... +...++ +.|++++|.++ .+|.
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~-------~~~~ 241 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL-TSLSITHCNLT-------AVPY 241 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC-SEEEEESSCCC-------SCCH
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc-cEEECcCCccc-------ccCH
Confidence 44448999999999999999888888999999999999998876654222 223345 99999999988 6664
Q ss_pred hccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCcee
Q 048551 309 GISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCG 386 (409)
Q Consensus 309 ~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g 386 (409)
.. +..+++|+.|++++|++++..+..+..+++|++|++ +|++.+..|.. ..+++|+.|++++| .+.+
T Consensus 242 ~~----------~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 310 (477)
T 2id5_A 242 LA----------VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN-QLTT 310 (477)
T ss_dssp HH----------HTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS-CCSC
T ss_pred HH----------hcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC-cCce
Confidence 32 345688899999999999888888999999999999 89999887776 78899999999999 6775
Q ss_pred cCC
Q 048551 387 GFD 389 (409)
Q Consensus 387 ~~p 389 (409)
..+
T Consensus 311 ~~~ 313 (477)
T 2id5_A 311 LEE 313 (477)
T ss_dssp CCG
T ss_pred eCH
Confidence 544
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.6e-34 Score=288.33 Aligned_cols=313 Identities=19% Similarity=0.183 Sum_probs=181.9
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
|.++++|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..++.+++|++|+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 34677777777777755566677777777777777777665566677777777777777776643333566677777777
Q ss_pred eecccccc-cCCccccCCCCCcEEeCCCCCCCCCCCCCC-----------------------------------------
Q 048551 147 FCVIKLTG-QLPASIQNLSSHLEADSNRNNFGGKIPESP----------------------------------------- 184 (409)
Q Consensus 147 L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~----------------------------------------- 184 (409)
+++|.+++ .+|..++++++|++|++++|.+++..+..+
T Consensus 131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred cCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence 77777664 356667777777777776666543322222
Q ss_pred --------------------------------------------------------------------CCCCCCcEEEcc
Q 048551 185 --------------------------------------------------------------------GQLRSLFYLNVG 196 (409)
Q Consensus 185 --------------------------------------------------------------------~~l~~L~~L~l~ 196 (409)
..+++|++|+++
T Consensus 211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 290 (570)
T 2z63_A 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290 (570)
T ss_dssp CSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred cccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence 122344444444
Q ss_pred CCcCcccCcccCCCCCCcEEEeecCcCcccCchHHh-------------------hCCCccceeecccccccccc--chh
Q 048551 197 GNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIG-------------------AKLPNLRKIVIALNNFTGPL--PDS 255 (409)
Q Consensus 197 ~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-------------------~~l~~L~~L~L~~n~l~~~~--p~~ 255 (409)
+|.+.+.+..+..+ +|+.|++++|.+. .+|.... ..+++|++|++++|.+++.. |..
T Consensus 291 ~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 368 (570)
T 2z63_A 291 SVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368 (570)
T ss_dssp SCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHH
T ss_pred CccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccc
Confidence 44443322222222 2222222222222 1111000 13444555555555554322 344
Q ss_pred hhcCCCCCEEEcccC-----------------------cCccccc-hhhh-hcccCcEEecccCCccccccccccCChhc
Q 048551 256 FSNASNRERLELSYN-----------------------QFRGKSI-WRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGI 310 (409)
Q Consensus 256 l~~l~~L~~L~Ls~N-----------------------~l~~~~~-~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~ 310 (409)
+..+++|++|++++| ++++... ..+. ++++ +.|++++|.+. +..|..+
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~------~~~~~~~ 441 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTR------VAFNGIF 441 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC-CEEECTTSCCE------ECCTTTT
T ss_pred ccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC-CEEeCcCCccc------ccchhhh
Confidence 444445555555544 4443321 1111 3333 56666666665 4556667
Q ss_pred cCCCCCCccc--------------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCC
Q 048551 311 SNLVNLDSLA--------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKT 374 (409)
Q Consensus 311 ~~l~~L~~L~--------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~ 374 (409)
..+++|+.|+ +..+++|++|++++|++++..|..+..+++|++|++ +|++++..|.. ..+++|+
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 7777777776 445778888888888888777888888888888888 77777766654 6778888
Q ss_pred eecccCCCCceecCC
Q 048551 375 RISLAGNGKLCGGFD 389 (409)
Q Consensus 375 ~L~l~~Np~l~g~~p 389 (409)
.|++++||.-| ..|
T Consensus 522 ~L~l~~N~~~~-~~~ 535 (570)
T 2z63_A 522 KIWLHTNPWDC-SCP 535 (570)
T ss_dssp EEECCSSCBCC-CTT
T ss_pred EEEecCCcccC-CCc
Confidence 88888886544 444
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.1e-34 Score=288.61 Aligned_cols=318 Identities=19% Similarity=0.173 Sum_probs=233.6
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
++++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|.+++..|..|+++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 79999999999998778899999999999999999998888889999999999999999997777889999999999999
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCC-CCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCC----cEEEeecCc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGG-KIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSL----EMIYLHDNR 222 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L----~~L~l~~n~ 222 (409)
+|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+ .+..+++| +.+++++|.
T Consensus 109 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp TSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred ccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCC
Confidence 999996555579999999999999999987 468899999999999999998876654 33333333 334444333
Q ss_pred Cccc----------------------------------------------------------------------------
Q 048551 223 LNGN---------------------------------------------------------------------------- 226 (409)
Q Consensus 223 l~~~---------------------------------------------------------------------------- 226 (409)
+++.
T Consensus 189 l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~ 268 (570)
T 2z63_A 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268 (570)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETT
T ss_pred ceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcch
Confidence 3211
Q ss_pred -----CchHHhhCCCccceeeccccccccccchhh------------------------------------------hcC
Q 048551 227 -----LPPVIGAKLPNLRKIVIALNNFTGPLPDSF------------------------------------------SNA 259 (409)
Q Consensus 227 -----~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l------------------------------------------~~l 259 (409)
+|..+. .+++|++|++++|.++ .+|..+ ..+
T Consensus 269 ~~~~~~~~~~~-~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (570)
T 2z63_A 269 YYLDDIIDLFN-CLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346 (570)
T ss_dssp EEESCSTTTTG-GGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBC
T ss_pred hhhhhchhhhc-CcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccC
Confidence 111111 2334444444444433 122111 467
Q ss_pred CCCCEEEcccCcCcccc--chhhh-hcccCcEEecccCCccc------ccccc-----------ccCC-hhccCCCCCCc
Q 048551 260 SNRERLELSYNQFRGKS--IWRSA-ATSYSQRLNDDDQNHHG------RQQNI-----------CYLP-TGISNLVNLDS 318 (409)
Q Consensus 260 ~~L~~L~Ls~N~l~~~~--~~~~~-l~~l~~~L~l~~n~l~~------~~~~l-----------~~ip-~~~~~l~~L~~ 318 (409)
++|++|++++|++++.. ...+. ++++ +.|++++|.+.+ .++.+ +..| ..+..+++|++
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSL-KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCC-CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCEEeCcCCccCccccccccccccCcc-CEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 88999999999998764 22222 4455 777777777653 11111 1122 24566777777
Q ss_pred cc-------------cCCCCCCCEEECcCCccc-cccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCC
Q 048551 319 LA-------------TDSLKSIEELDLSSNNLS-GQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNG 382 (409)
Q Consensus 319 L~-------------~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np 382 (409)
|+ +.++++|++|++++|+++ +.+|..+..+++|++|++ +|++.+..|.. ..+++|+.|++++|
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n- 504 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN- 504 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-
Confidence 76 456778888888888887 467778888888888888 78888776765 67788888888888
Q ss_pred CceecCCC
Q 048551 383 KLCGGFDG 390 (409)
Q Consensus 383 ~l~g~~p~ 390 (409)
.+.+.+|.
T Consensus 505 ~l~~~~~~ 512 (570)
T 2z63_A 505 QLKSVPDG 512 (570)
T ss_dssp CCSCCCTT
T ss_pred cCCCCCHH
Confidence 67766654
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=7.9e-34 Score=293.92 Aligned_cols=315 Identities=19% Similarity=0.157 Sum_probs=209.2
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCc-----cCCc----ccCCC
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAG-----EIPA----EIGNL 139 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~p~----~~~~l 139 (409)
++++|++++|.+++..|..|..+++|++|++++|.+++..|..|.++++|++|++++|...+ .+|. .++.+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 57888888888877677777788888888888888777767666666666666666554332 1222 45566
Q ss_pred CCCcEEEeecccccccCCccccCCCCCcEEeCCCC----------------------------CCCCCCCCCCCCCCCCc
Q 048551 140 FKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRN----------------------------NFGGKIPESPGQLRSLF 191 (409)
Q Consensus 140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n----------------------------~l~~~~~~~~~~l~~L~ 191 (409)
++|++|++++|.+++..+..+.++++|++|++++| ++++..|..+..+++|+
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 66666666666666555555555555555555444 44444455556666666
Q ss_pred EEEccCCcCcccCc--ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccc--cccchhhhcCCCCCEEEc
Q 048551 192 YLNVGGNQFSGMFL--PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFT--GPLPDSFSNASNRERLEL 267 (409)
Q Consensus 192 ~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L 267 (409)
+|++++|.+.+..+ .+.++++|+.|++++|.+++..+..+. .+++|+.|++++|.++ +..|..+.++++|+.|++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh-cCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 66666666654332 455666666666666666533333333 5666666666666654 356667777778888888
Q ss_pred ccCcCccccchhhh-hcccCcEEecccCCccccccccccCC----hhccCCCCCCccc-------------cCCCCCCCE
Q 048551 268 SYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLP----TGISNLVNLDSLA-------------TDSLKSIEE 329 (409)
Q Consensus 268 s~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip----~~~~~l~~L~~L~-------------~~~l~~L~~ 329 (409)
++|++++.+...+. +.++ +.|++++|.+++-.. ..+| ..+..+++|+.|+ |.++++|+.
T Consensus 488 s~N~l~~i~~~~~~~l~~L-~~L~Ls~N~l~~~~~--~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKL-EILDLQHNNLARLWK--HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTC-CEEECCSSCCGGGGS--TTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCcCChhhhcccccc-CEEeCCCCCccccch--hhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 88887776544444 4455 788888887762100 0111 2356667777766 567889999
Q ss_pred EECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-C-CCCCCCeecccCCCCceec
Q 048551 330 LDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-G-VFNNKTRISLAGNGKLCGG 387 (409)
Q Consensus 330 L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~-~~~~L~~L~l~~Np~l~g~ 387 (409)
|++++|++++..+..|..+++|++|++ +|++++..+.. . .+++|+.+++++||+.|+.
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 999999999776777889999999999 88887765543 3 5789999999999999854
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=284.06 Aligned_cols=127 Identities=14% Similarity=0.118 Sum_probs=112.2
Q ss_pred CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
.++++|++++|.+++..|..|..+++|++|++++|++++..|..|.++++|++|++++|+++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 48999999999999777788999999999999999999888889999999999999999998 57765 7899999999
Q ss_pred ecccccc-cCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCC--cEEEccCCcC
Q 048551 148 CVIKLTG-QLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSL--FYLNVGGNQF 200 (409)
Q Consensus 148 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~l 200 (409)
++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 9999986 478899999999999999999885 346677777 9999999988
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.2e-33 Score=283.11 Aligned_cols=306 Identities=19% Similarity=0.194 Sum_probs=228.3
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
|...+++++++|+++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 445689999999999 5887665 8999999999999987778999999999999999999988889999999999999
Q ss_pred eecccccccCCccccCCCCCcEEeCCCCCCCC-CCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCC--cEEEeecCcC
Q 048551 147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGG-KIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSL--EMIYLHDNRL 223 (409)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L--~~L~l~~n~l 223 (409)
+++|.++ .+|.. .+++|++|++++|++++ ..|..++++++|++|++++|.+++. .+..+++| +.|++++|.+
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 9999999 67766 89999999999999986 3467899999999999999999863 34455555 9999999988
Q ss_pred --cccCchHHhh--------------------------------------------------------------------
Q 048551 224 --NGNLPPVIGA-------------------------------------------------------------------- 233 (409)
Q Consensus 224 --~~~~p~~~~~-------------------------------------------------------------------- 233 (409)
++..|..+..
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 5444433320
Q ss_pred ------------CCCccceeeccccccccccchhh---------------------------------------------
Q 048551 234 ------------KLPNLRKIVIALNNFTGPLPDSF--------------------------------------------- 256 (409)
Q Consensus 234 ------------~l~~L~~L~L~~n~l~~~~p~~l--------------------------------------------- 256 (409)
..++|++|++++|.+++.+|..+
T Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence 11267788888888887776654
Q ss_pred --------hcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCChhccCCCCCCccc-------
Q 048551 257 --------SNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA------- 320 (409)
Q Consensus 257 --------~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~------- 320 (409)
..+++|++|++++|++++.....+. ++++ +.|++++|.+++ +..+|..+..+++|+.|+
T Consensus 342 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~----~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL-QTLILQRNGLKN----FFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSC-CEEECCSSCCCB----TTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred CcccccCccCCCCceEEECCCCccccchhhhhcccCCC-CEEECCCCCcCC----cccchhhhcCCCCCCEEECCCCcCC
Confidence 4556677777777777664433333 4444 777777776661 012234466666666666
Q ss_pred -------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCceecCCC
Q 048551 321 -------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCGGFDG 390 (409)
Q Consensus 321 -------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g~~p~ 390 (409)
+..+++|++|++++|++++.+|..+. ++|++|++ +|++. .+|.. ..+++|+.|++++| .+. .+|.
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N-~l~-~l~~ 490 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN-QLK-SVPD 490 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSS-CCC-CCCT
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCC-CCC-CCCH
Confidence 33456777777777777766655443 67888888 66665 56654 67788888889888 566 4554
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=295.17 Aligned_cols=302 Identities=21% Similarity=0.162 Sum_probs=209.7
Q ss_pred CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccC-CccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTI-PTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
.++++|+|++|.+++..|..|.++++|++|++++|.+.+.+ |..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 37889999999998778888999999999999999665555 77888999999999999999877788899999999999
Q ss_pred eecccccccCCcc--ccCCCCCcEEeCCCCCCCCCCC-CCCCCCCCCcEEEccCCcCcccCc-ccCCC--CCCcEEEeec
Q 048551 147 FCVIKLTGQLPAS--IQNLSSHLEADSNRNNFGGKIP-ESPGQLRSLFYLNVGGNQFSGMFL-PVYNL--SSLEMIYLHD 220 (409)
Q Consensus 147 L~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l--~~L~~L~l~~ 220 (409)
+++|.+++..|.. +.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..+ .+..+ ++|+.|++++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 9999988766655 8889999999999999886654 468889999999999998887665 55555 6777777777
Q ss_pred CcCcccCchHHhhCCCc------cceeeccccccccccchhhhc------------------------------------
Q 048551 221 NRLNGNLPPVIGAKLPN------LRKIVIALNNFTGPLPDSFSN------------------------------------ 258 (409)
Q Consensus 221 n~l~~~~p~~~~~~l~~------L~~L~L~~n~l~~~~p~~l~~------------------------------------ 258 (409)
|.+.+..|..+. .+++ |+.|++++|.+++..+..+..
T Consensus 184 n~l~~~~~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 184 NSLYSRVSVDWG-KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp SBSCCCCCCCCC-SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred Cccccccccchh-hcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 777766655443 3333 777777777665544433321
Q ss_pred --CCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCChhccCCCCCCccc-------------cC
Q 048551 259 --ASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-------------TD 322 (409)
Q Consensus 259 --l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-------------~~ 322 (409)
.++|+.|++++|.+.+.....+. ++++ +.|++++|.+. +..|..+..+++|+.|+ |.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDL-KVLNLAYNKIN------KIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCC-CEEEEESCCCC------EECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCC-CEEECCCCcCC------CCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 14566666666666554433333 3344 66666666665 33344555555555554 44
Q ss_pred CCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCCeecccCC
Q 048551 323 SLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGN 381 (409)
Q Consensus 323 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~~L~l~~N 381 (409)
++++|++|++++|++++..+..+..+++|++|++ +|.+.+ ++. +++|+.+++++|
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~---~~~L~~L~l~~N 391 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF---IPSIPDIFLSGN 391 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS---CCSCSEEEEESC
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccC---CCCcchhccCCC
Confidence 5566667777777666555556666666777766 554442 222 455555555555
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.8e-32 Score=258.50 Aligned_cols=288 Identities=21% Similarity=0.279 Sum_probs=197.1
Q ss_pred CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
.++++|+++++.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred ccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEEC
Confidence 36777777777776 444 367777777777777777743 33 7777777777777777763 33 4777777777777
Q ss_pred ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccC
Q 048551 148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNL 227 (409)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~ 227 (409)
++|.+++ ++. +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+. .+
T Consensus 118 ~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~-~~ 192 (347)
T 4fmz_A 118 NEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE-DI 192 (347)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC-CC
T ss_pred cCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc-cc
Confidence 7777763 333 6777777777777775543333 36677777777777777765443 666777777777777776 44
Q ss_pred chHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccC
Q 048551 228 PPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYL 306 (409)
Q Consensus 228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~i 306 (409)
+. +. .+++|+.+++++|.+++..+ +..+++|++|++++|++++.+. +. ++++ +.|++++|.++ .+
T Consensus 193 ~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L-~~L~l~~n~l~-------~~ 258 (347)
T 4fmz_A 193 SP-LA-SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL-TWLEIGTNQIS-------DI 258 (347)
T ss_dssp GG-GG-GCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC-CEEECCSSCCC-------CC
T ss_pred cc-cc-CCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCC-CEEECCCCccC-------CC
Confidence 44 33 66777777777777764433 6677777777777777766543 22 3344 77777777666 23
Q ss_pred ChhccCCCCCCccc-----------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCC
Q 048551 307 PTGISNLVNLDSLA-----------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKT 374 (409)
Q Consensus 307 p~~~~~l~~L~~L~-----------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~ 374 (409)
..+..+++|+.|+ +..+++|++|++++|++++..|..+..+++|++|++ +|++++..| ...+++|+
T Consensus 259 -~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~ 336 (347)
T 4fmz_A 259 -NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMD 336 (347)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCS
T ss_pred -hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccc
Confidence 2344555555554 445678888888888888888888888888888888 788777666 45788888
Q ss_pred eecccCCC
Q 048551 375 RISLAGNG 382 (409)
Q Consensus 375 ~L~l~~Np 382 (409)
.|++++|+
T Consensus 337 ~L~l~~N~ 344 (347)
T 4fmz_A 337 SADFANQV 344 (347)
T ss_dssp EESSSCC-
T ss_pred eeehhhhc
Confidence 88888884
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.5e-32 Score=276.20 Aligned_cols=136 Identities=18% Similarity=0.150 Sum_probs=122.2
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
++++|||++|+|++..+.+|.++++|++|+|++|+|++..+.+|.++++|++|++++|++++..+..|+++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 68999999999997677789999999999999999998778889999999999999999996666779999999999999
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCC-CCCCCCCCCCCCcEEEccCCcCcccC
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGG-KIPESPGQLRSLFYLNVGGNQFSGMF 204 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~ 204 (409)
+|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|.+++..
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 999997666779999999999999999975 45777889999999999999876553
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3e-32 Score=257.83 Aligned_cols=269 Identities=22% Similarity=0.244 Sum_probs=211.8
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
+++.+++++++++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..++.+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6788999999998 7787664 789999999999997778889999999999999999998778899999999999999
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcc--cCc-ccCCCCCCcEEEeecCcCcc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSG--MFL-PVYNLSSLEMIYLHDNRLNG 225 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~-~~~~l~~L~~L~l~~n~l~~ 225 (409)
+|.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++. ..+ .+..+ +|+.|++++|.++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~- 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT- 185 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence 99998 6776655 799999999999997666678999999999999999964 444 66666 9999999999998
Q ss_pred cCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCcccccccccc
Q 048551 226 NLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICY 305 (409)
Q Consensus 226 ~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ 305 (409)
.+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++.+.
T Consensus 186 ~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~---------------------------- 234 (332)
T 2ft3_A 186 GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN---------------------------- 234 (332)
T ss_dssp SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT----------------------------
T ss_pred ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh----------------------------
Confidence 6777653 789999999999998888889999999999999999875432
Q ss_pred CChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-C------CCCCCCeec
Q 048551 306 LPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-G------VFNNKTRIS 377 (409)
Q Consensus 306 ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~------~~~~L~~L~ 377 (409)
..+ ..+++|++|++++|+++ .+|..+..+++|++|++ +|++++..+.. . .+++|+.++
T Consensus 235 --~~~-----------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 235 --GSL-----------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp --TGG-----------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred --hHh-----------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceE
Confidence 122 22355566666666666 56666666666777776 55555433322 1 135566677
Q ss_pred ccCCCCceecCCC
Q 048551 378 LAGNGKLCGGFDG 390 (409)
Q Consensus 378 l~~Np~l~g~~p~ 390 (409)
+++||..+..+++
T Consensus 301 l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 301 LFNNPVPYWEVQP 313 (332)
T ss_dssp CCSSSSCGGGSCG
T ss_pred eecCcccccccCc
Confidence 7777655444443
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-32 Score=287.07 Aligned_cols=302 Identities=19% Similarity=0.174 Sum_probs=254.3
Q ss_pred cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccC-CcccCCCCCCcEEEeec
Q 048551 71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEI-PAEIGNLFKLEKLSFCV 149 (409)
Q Consensus 71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~L~~ 149 (409)
+..+.++++++ .+|. -.+++++|+|++|.+++..|..|.++++|++|++++|...+.+ |..|+++++|++|++++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 46788899999 7776 4579999999999999888999999999999999999666566 77899999999999999
Q ss_pred ccccccCCccccCCCCCcEEeCCCCCCCCCCCCC--CCCCCCCcEEEccCCcCcccCc--ccCCCCCCcEEEeecCcCcc
Q 048551 150 IKLTGQLPASIQNLSSHLEADSNRNNFGGKIPES--PGQLRSLFYLNVGGNQFSGMFL--PVYNLSSLEMIYLHDNRLNG 225 (409)
Q Consensus 150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~ 225 (409)
|.+++..|..|.++++|++|++++|.+++..|.. +.++++|++|++++|.+++..+ .+.++++|++|++++|.+++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 9999888999999999999999999999876655 8999999999999999988754 68999999999999999997
Q ss_pred cCchHHhhCC--CccceeeccccccccccchhhhcCCC------CCEEEcccCcCccccchhhh----------------
Q 048551 226 NLPPVIGAKL--PNLRKIVIALNNFTGPLPDSFSNASN------RERLELSYNQFRGKSIWRSA---------------- 281 (409)
Q Consensus 226 ~~p~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~------L~~L~Ls~N~l~~~~~~~~~---------------- 281 (409)
..+..+. .+ ++|+.|++++|.+.+..|..+..+.+ |+.|++++|.+++.....+.
T Consensus 163 ~~~~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eCHHHcc-cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 7777776 55 89999999999999888887777665 99999999987654321111
Q ss_pred -----------------------hcccCcEEecccCCccccccccccCChhccCCCCCCccc-------------cCCCC
Q 048551 282 -----------------------ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-------------TDSLK 325 (409)
Q Consensus 282 -----------------------l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-------------~~~l~ 325 (409)
..++ +.|++++|.+. +..|..+..+++|+.|+ |.+++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L-~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 314 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSV-RHLDLSHGFVF------SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCC-CEEECTTCCCC------EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCS
T ss_pred cccccccccccCCCChhhhhccccCCc-cEEECCCCccc------ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCC
Confidence 0233 78888888887 45566777888888887 66788
Q ss_pred CCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCce
Q 048551 326 SIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLC 385 (409)
Q Consensus 326 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~ 385 (409)
+|++|++++|++++..|..+..+++|++|++ +|++.+..+.. ..+++|+.|++++| .+.
T Consensus 315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~ 375 (844)
T 3j0a_A 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALT 375 (844)
T ss_dssp SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC-CSC
T ss_pred CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC-CCC
Confidence 9999999999998777888999999999999 77776555543 67889999999998 455
No 33
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.9e-32 Score=273.52 Aligned_cols=312 Identities=19% Similarity=0.209 Sum_probs=233.1
Q ss_pred CCCceeeecCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCC
Q 048551 59 LCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGN 138 (409)
Q Consensus 59 ~c~~~g~~c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 138 (409)
.|.|.|+ | +.++++++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|+.
T Consensus 3 ~C~~~~~-c------~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 72 (549)
T 2z81_A 3 SCDASGV-C------DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS 72 (549)
T ss_dssp EECTTSE-E------ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTT
T ss_pred cCCCCce-E------ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccc
Confidence 4777776 5 77889998 7887665 79999999999999888899999999999999999999888889999
Q ss_pred CCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCC-CCCCCCCCCCCCcEEEccCCc-CcccCc-ccCCCCCCcE
Q 048551 139 LFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGG-KIPESPGQLRSLFYLNVGGNQ-FSGMFL-PVYNLSSLEM 215 (409)
Q Consensus 139 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~l~~L~~ 215 (409)
+++|++|++++|.+++..|..++++++|++|++++|.+++ ..|..++++++|++|++++|. +...++ .+.++++|++
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 9999999999999997777779999999999999999986 456789999999999999998 455554 7899999999
Q ss_pred EEeecCcCcccCchHHhhCCCccceeeccccccccccchh-hhcCCCCCEEEcccCcCccccchhh---h-h--------
Q 048551 216 IYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDS-FSNASNRERLELSYNQFRGKSIWRS---A-A-------- 282 (409)
Q Consensus 216 L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~~~~~---~-l-------- 282 (409)
|++++|.+++.+|..+. .+++|++|++++|.+. .+|.. +..+++|++|++++|++++..+... . .
T Consensus 153 L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l 230 (549)
T 2z81_A 153 LEIKALSLRNYQSQSLK-SIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230 (549)
T ss_dssp EEEEETTCCEECTTTTT-TCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEE
T ss_pred eeccCCcccccChhhhh-ccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceec
Confidence 99999999988888776 7777888888777766 33433 3557777777777777766421000 0 0
Q ss_pred --------------------cccCcEEecccCCcccc-------------------------------------------
Q 048551 283 --------------------TSYSQRLNDDDQNHHGR------------------------------------------- 299 (409)
Q Consensus 283 --------------------~~l~~~L~l~~n~l~~~------------------------------------------- 299 (409)
..+ +.+++++|.+.|.
T Consensus 231 ~~n~l~~~~~~~l~~~~~~~~~L-~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~ 309 (549)
T 2z81_A 231 RGSVLTDESFNELLKLLRYILEL-SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309 (549)
T ss_dssp ESCEEEHHHHHHHHGGGGGCTTC-CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS
T ss_pred cccccchhHHHHHHHHhhhhccc-cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhc
Confidence 011 2222222222110
Q ss_pred --cc-------ccccCChhc-cCCCCCCccc----------------cCCCCCCCEEECcCCccccccc--hhhhcCCCC
Q 048551 300 --QQ-------NICYLPTGI-SNLVNLDSLA----------------TDSLKSIEELDLSSNNLSGQLP--RLLVNLSFL 351 (409)
Q Consensus 300 --~~-------~l~~ip~~~-~~l~~L~~L~----------------~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L 351 (409)
++ .+..+|..+ ..+++|++|+ +..+++|++|++++|++++..+ ..+..+++|
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 00 002456555 3577777777 2356788888888888875432 457788888
Q ss_pred cEEEe-eccceecCCCC-CCCCCCCeecccCCCCce
Q 048551 352 VLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLC 385 (409)
Q Consensus 352 ~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~ 385 (409)
++|++ +|++. .+|.. ..+++|+.|++++| .+.
T Consensus 390 ~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N-~l~ 423 (549)
T 2z81_A 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSST-GIR 423 (549)
T ss_dssp CEEECTTCCCC-CCCSCCCCCTTCCEEECTTS-CCS
T ss_pred CEEECCCCCCc-cCChhhcccccccEEECCCC-Ccc
Confidence 88888 77666 45654 56677788888777 343
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.1e-31 Score=253.79 Aligned_cols=270 Identities=19% Similarity=0.268 Sum_probs=216.8
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
+++.+++++++++ .+|..+. +.+++|++++|.+++..+..|..+++|++|++++|.+++..|..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6788899999988 6776654 689999999999997777789999999999999999997778999999999999999
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcc--cCc-ccCCCCCCcEEEeecCcCcc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSG--MFL-PVYNLSSLEMIYLHDNRLNG 225 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~-~~~~l~~L~~L~l~~n~l~~ 225 (409)
+|.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+ .+.++++|+.|++++|.++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 99998 6676655 799999999999997777778999999999999999964 444 7888999999999999998
Q ss_pred cCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCcccccccccc
Q 048551 226 NLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICY 305 (409)
Q Consensus 226 ~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ 305 (409)
.+|..+. ++|++|++++|.+++..|..+..+++|++|++++|++++.+.
T Consensus 185 ~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------------------------- 233 (330)
T 1xku_A 185 TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN---------------------------- 233 (330)
T ss_dssp SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT----------------------------
T ss_pred cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh----------------------------
Confidence 6777643 789999999999998888899999999999999999875421
Q ss_pred CChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-------CCCCCCCeec
Q 048551 306 LPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-------GVFNNKTRIS 377 (409)
Q Consensus 306 ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-------~~~~~L~~L~ 377 (409)
..+ ..+++|++|++++|+++ .+|..+..+++|++|++ +|++++..+.. ...++++.++
T Consensus 234 --~~~-----------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~ 299 (330)
T 1xku_A 234 --GSL-----------ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299 (330)
T ss_dssp --TTG-----------GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred --hhc-----------cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence 122 23456677777777777 56666777777777777 66665433322 1235677777
Q ss_pred ccCCCCceecCCC
Q 048551 378 LAGNGKLCGGFDG 390 (409)
Q Consensus 378 l~~Np~l~g~~p~ 390 (409)
+++||.-+..+++
T Consensus 300 l~~N~~~~~~i~~ 312 (330)
T 1xku_A 300 LFSNPVQYWEIQP 312 (330)
T ss_dssp CCSSSSCGGGSCG
T ss_pred eecCcccccccCc
Confidence 7777766655543
No 35
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=100.00 E-value=8.4e-32 Score=256.93 Aligned_cols=283 Identities=19% Similarity=0.206 Sum_probs=210.3
Q ss_pred CCCCCCCCCceeeecCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccC
Q 048551 53 LTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEI 132 (409)
Q Consensus 53 w~~~~~~c~~~g~~c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 132 (409)
|......|.|.++ | ++++++++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 23 ~~~~~~~C~~~~~-c------~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (353)
T 2z80_A 23 SNQASLSCDRNGI-C------KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92 (353)
T ss_dssp ----CCEECTTSE-E------ECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred CCccCCCCCCCeE-e------eCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC
Confidence 4445567777765 4 77899998 7887665 58999999999999766668999999999999999999877
Q ss_pred CcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCC-CCCCCCCCCcEEEccCC-cCcccCc-ccCC
Q 048551 133 PAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIP-ESPGQLRSLFYLNVGGN-QFSGMFL-PVYN 209 (409)
Q Consensus 133 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~ 209 (409)
|..|+++++|++|++++|.+++..+..+.++++|++|++++|++++..+ ..+.++++|++|++++| .+....+ .+.+
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC
Confidence 8889999999999999999995444458999999999999999985444 47889999999999999 4777666 7889
Q ss_pred CCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEE
Q 048551 210 LSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRL 289 (409)
Q Consensus 210 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L 289 (409)
+++|++|++++|.+++..|..+. .+++|++|++++|.++...+..+..+++|+.|++++|++++.....+.
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-------- 243 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS-------- 243 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------
T ss_pred CCCCCEEECCCCCcCccCHHHHh-ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc--------
Confidence 99999999999999977787777 899999999999999744444456789999999999999865321111
Q ss_pred ecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCcccc----ccchhhhcCCCCcEEEe-eccceecC
Q 048551 290 NDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSG----QLPRLLVNLSFLVLLNL-YNHFDGEV 364 (409)
Q Consensus 290 ~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L-~n~l~~~~ 364 (409)
. ....+.++.++++++++++ .+|..+..+++|++|++ +|++. .+
T Consensus 244 ----------------------~--------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i 292 (353)
T 2z80_A 244 ----------------------T--------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SV 292 (353)
T ss_dssp ---------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CC
T ss_pred ----------------------c--------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-cc
Confidence 0 0112334555555555543 24555556666666666 55554 33
Q ss_pred CCC--CCCCCCCeecccCCCCce
Q 048551 365 PTK--GVFNNKTRISLAGNGKLC 385 (409)
Q Consensus 365 p~~--~~~~~L~~L~l~~Np~l~ 385 (409)
|.. ..+++|+.|++++||..|
T Consensus 293 ~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 293 PDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCC
T ss_pred CHHHHhcCCCCCEEEeeCCCccC
Confidence 432 455666666666665444
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=4.1e-31 Score=250.02 Aligned_cols=275 Identities=19% Similarity=0.252 Sum_probs=217.9
Q ss_pred CCCCceeeecC-------------CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcC
Q 048551 58 NLCEWTGVTCA-------------SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFAN 124 (409)
Q Consensus 58 ~~c~~~g~~c~-------------~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 124 (409)
+.|.|..+.|. ++++|++++|.+++..|..|.++++|++|++++|.+++..|..|..+++|++|+++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 45788888886 68999999999997778899999999999999999998889999999999999999
Q ss_pred CCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCC--CCCCCCCCCCCCCcEEEccCCcCcc
Q 048551 125 RNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFG--GKIPESPGQLRSLFYLNVGGNQFSG 202 (409)
Q Consensus 125 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~ 202 (409)
+|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.++ +..+..+..+ +|++|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99999 6776655 89999999999999666667999999999999999996 3677788888 99999999999998
Q ss_pred cCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhh
Q 048551 203 MFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAA 282 (409)
Q Consensus 203 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l 282 (409)
.+..+. ++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++|++|++++|+++.
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------- 255 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLL-RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-------- 255 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSST-TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB--------
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee--------
Confidence 665443 7999999999999965556666 89999999999999998888889999999999999999873
Q ss_pred cccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhc------CCCCcEEEe
Q 048551 283 TSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVN------LSFLVLLNL 356 (409)
Q Consensus 283 ~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~L 356 (409)
+|..+.. +++|++|++++|+|++..+..+.. .+.|+.+++
T Consensus 256 -----------------------lp~~l~~-----------l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l 301 (332)
T 2ft3_A 256 -----------------------VPAGLPD-----------LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301 (332)
T ss_dssp -----------------------CCTTGGG-----------CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred -----------------------cChhhhc-----------CccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence 4443322 345566666666666544444433 245666666
Q ss_pred -eccce--ecCCCC-CCCCCCCeecccCC
Q 048551 357 -YNHFD--GEVPTK-GVFNNKTRISLAGN 381 (409)
Q Consensus 357 -~n~l~--~~~p~~-~~~~~L~~L~l~~N 381 (409)
+|.+. +..|.. ..+++|+.+++++|
T Consensus 302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 302 FNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ecCcccccccCcccccccchhhhhhcccc
Confidence 55554 222222 44566666666665
No 37
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=3.7e-31 Score=250.08 Aligned_cols=277 Identities=19% Similarity=0.259 Sum_probs=233.5
Q ss_pred CCCCCceeeecC-------------CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEc
Q 048551 57 VNLCEWTGVTCA-------------SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFA 123 (409)
Q Consensus 57 ~~~c~~~g~~c~-------------~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 123 (409)
...|.|..+.|. .+++|++++|++++..+..|.++++|++|++++|.+++..|..|..+++|++|++
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 346688888885 6899999999999777778999999999999999999888999999999999999
Q ss_pred CCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCC--CCCCCCCCCCCCcEEEccCCcCc
Q 048551 124 NRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGG--KIPESPGQLRSLFYLNVGGNQFS 201 (409)
Q Consensus 124 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~ 201 (409)
++|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999999 6776654 799999999999997777789999999999999999964 66778899999999999999999
Q ss_pred ccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh
Q 048551 202 GMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA 281 (409)
Q Consensus 202 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 281 (409)
..+..+. ++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------- 253 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------- 253 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--------
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--------
Confidence 8655443 8999999999999966667776 8999999999999999887778999999999999999986
Q ss_pred hcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhc------CCCCcEEE
Q 048551 282 ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVN------LSFLVLLN 355 (409)
Q Consensus 282 l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~ 355 (409)
.+|..+. .+++|++|++++|+|++..+..|.. .+.++.++
T Consensus 254 -----------------------~lp~~l~-----------~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~ 299 (330)
T 1xku_A 254 -----------------------KVPGGLA-----------DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299 (330)
T ss_dssp -----------------------SCCTTTT-----------TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred -----------------------cCChhhc-----------cCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence 4565543 3477899999999999776666643 37899999
Q ss_pred e-ecccee-cCC-CC-CCCCCCCeecccCC
Q 048551 356 L-YNHFDG-EVP-TK-GVFNNKTRISLAGN 381 (409)
Q Consensus 356 L-~n~l~~-~~p-~~-~~~~~L~~L~l~~N 381 (409)
+ +|.+.. .++ .. ..+.+++.+++++|
T Consensus 300 l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred eecCcccccccCccccccccceeEEEeccc
Confidence 9 887753 232 22 56788999999988
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.98 E-value=6.8e-31 Score=260.00 Aligned_cols=290 Identities=24% Similarity=0.307 Sum_probs=188.9
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
+.++++|++++|.+++. +. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEE
Confidence 55899999999999854 43 8899999999999999986544 8899999999999999985 443 88899999999
Q ss_pred eecccccccCCc--------------------cccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcc
Q 048551 147 FCVIKLTGQLPA--------------------SIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLP 206 (409)
Q Consensus 147 L~~n~l~~~~p~--------------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 206 (409)
+++|.+++ ++. .+.++++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+
T Consensus 141 l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 216 (466)
T 1o6v_A 141 LSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP- 216 (466)
T ss_dssp EEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-
Confidence 99998874 332 133445555555555555422 124455555555555555554433
Q ss_pred cCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hccc
Q 048551 207 VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSY 285 (409)
Q Consensus 207 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l 285 (409)
+..+++|+.|++++|.++ .++ .+. .+++|++|++++|.+++..+ +..+++|++|++++|++++.+. +. ++++
T Consensus 217 ~~~l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLK-DIG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp GGGCTTCCEEECCSSCCC-CCG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred ccccCCCCEEECCCCCcc-cch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 444555666666666555 332 233 55666666666666654433 5566666666666666655432 11 3333
Q ss_pred CcEEecccCCccccccccccCChhccCCCCCCccc-----------cCCCCCCCEEECcCCccccccchhhhcCCCCcEE
Q 048551 286 SQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-----------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLL 354 (409)
Q Consensus 286 ~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-----------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 354 (409)
+.|++++|.+. .++. +..+++|+.|+ +..+++|++|++++|++++. ..+..+++|++|
T Consensus 290 -~~L~L~~n~l~-------~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 358 (466)
T 1o6v_A 290 -TNLELNENQLE-------DISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWL 358 (466)
T ss_dssp -SEEECCSSCCS-------CCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred -CeEEcCCCccc-------Cchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccCCCCCEE
Confidence 66666666665 2332 55666666666 34566777777777777753 356677777777
Q ss_pred Ee-eccceecCCCCCCCCCCCeecccCCCCcee
Q 048551 355 NL-YNHFDGEVPTKGVFNNKTRISLAGNGKLCG 386 (409)
Q Consensus 355 ~L-~n~l~~~~p~~~~~~~L~~L~l~~Np~l~g 386 (409)
++ +|++.+..| ...+++|+.|++++|+ +++
T Consensus 359 ~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-~~~ 389 (466)
T 1o6v_A 359 SAGHNQISDLTP-LANLTRITQLGLNDQA-WTN 389 (466)
T ss_dssp ECCSSCCCBCGG-GTTCTTCCEEECCCEE-EEC
T ss_pred eCCCCccCccch-hhcCCCCCEEeccCCc-ccC
Confidence 77 777776666 3567777777777773 444
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=1.7e-31 Score=272.19 Aligned_cols=293 Identities=19% Similarity=0.181 Sum_probs=225.1
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
+.+|++|++++|.+++..|..|+.+++|++|+|++|.+++..|..|+.+++|++|++++|.+++..+..|+.+++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 35899999999999988888999999999999999999988888899999999999999999955555579999999999
Q ss_pred eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc-------------------Cccc
Q 048551 147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGM-------------------FLPV 207 (409)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------~~~~ 207 (409)
+++|.+++..|..+.++++|++|++++|.+++.. +..+++|+.|++++|.+++. ...
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~- 229 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP- 229 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS-
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc-
Confidence 9999999888888999999999999999998643 34456666666666655542 221
Q ss_pred CCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCc
Q 048551 208 YNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQ 287 (409)
Q Consensus 208 ~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~ 287 (409)
..++|+.|++++|.+++ +..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|++++.+.....++++ +
T Consensus 230 -~~~~L~~L~L~~n~l~~--~~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L-~ 304 (597)
T 3oja_B 230 -VNVELTILKLQHNNLTD--TAWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL-K 304 (597)
T ss_dssp -CCSCCCEEECCSSCCCC--CGGGG-GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTC-C
T ss_pred -cCCCCCEEECCCCCCCC--Chhhc-cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCC-c
Confidence 12467777777777764 24444 6777888888888777777777777777888888887777755332224445 7
Q ss_pred EEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCC
Q 048551 288 RLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPT 366 (409)
Q Consensus 288 ~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~ 366 (409)
.|++++|.+. .+|..+.. +++|++|++++|++++. + +..+++|++|++ +|.+.+....
T Consensus 305 ~L~Ls~N~l~-------~i~~~~~~-----------l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~ 363 (597)
T 3oja_B 305 VLDLSHNHLL-------HVERNQPQ-----------FDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR 363 (597)
T ss_dssp EEECCSSCCC-------CCGGGHHH-----------HTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred EEECCCCCCC-------ccCccccc-----------CCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH
Confidence 7778777776 56655543 46779999999999954 3 667899999999 8988765432
Q ss_pred CCCCCCCCeecccCCCCceecCCC
Q 048551 367 KGVFNNKTRISLAGNGKLCGGFDG 390 (409)
Q Consensus 367 ~~~~~~L~~L~l~~Np~l~g~~p~ 390 (409)
..+..+....+.+++..|+..+.
T Consensus 364 -~~~~~~~~~~~~~~~~~C~~~~~ 386 (597)
T 3oja_B 364 -ALFRNVARPAVDDADQHCKIDYQ 386 (597)
T ss_dssp -HHTTTCCTTTBCCCCCCCCTTCE
T ss_pred -HHHHHHhhhccccccccCCcchh
Confidence 23555555667788888876544
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=6e-31 Score=254.40 Aligned_cols=292 Identities=18% Similarity=0.181 Sum_probs=215.6
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
+.++++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.++...+..++.+++|++|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 34899999999999977777999999999999999999988888899999999999999999943344478999999999
Q ss_pred eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-----------------ccCC
Q 048551 147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-----------------PVYN 209 (409)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------~~~~ 209 (409)
+++|.+++..|..+.++++|++|++++|.+++.. +..+++|++|++++|.+++... ....
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~ 224 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 224 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccccc
Confidence 9999999877888999999999999999998542 4455666666666665554211 0112
Q ss_pred CCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEE
Q 048551 210 LSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRL 289 (409)
Q Consensus 210 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L 289 (409)
.++|+.|++++|.+++ . ..+. .+++|++|++++|.+++..|..+..+++|++|++++|++++.+.....++++ +.|
T Consensus 225 ~~~L~~L~l~~n~l~~-~-~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L-~~L 300 (390)
T 3o6n_A 225 NVELTILKLQHNNLTD-T-AWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL-KVL 300 (390)
T ss_dssp CSSCCEEECCSSCCCC-C-GGGG-GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTC-CEE
T ss_pred cccccEEECCCCCCcc-c-HHHc-CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCC-CEE
Confidence 3466666777776663 2 3344 5677777777777777666667777777777777777776654322223444 677
Q ss_pred ecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCC
Q 048551 290 NDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKG 368 (409)
Q Consensus 290 ~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~ 368 (409)
++++|.+. .+|..+.. +++|++|++++|++++. + +..+++|++|++ +|.+...-.. .
T Consensus 301 ~L~~n~l~-------~~~~~~~~-----------l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~ 358 (390)
T 3o6n_A 301 DLSHNHLL-------HVERNQPQ-----------FDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-A 358 (390)
T ss_dssp ECCSSCCC-------CCGGGHHH-----------HTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-H
T ss_pred ECCCCcce-------ecCccccc-----------cCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-H
Confidence 77777665 45554433 47789999999999954 4 678899999999 8888764322 3
Q ss_pred CCCCCCeecccCCCCceec
Q 048551 369 VFNNKTRISLAGNGKLCGG 387 (409)
Q Consensus 369 ~~~~L~~L~l~~Np~l~g~ 387 (409)
.+..+....+.+++..|+.
T Consensus 359 ~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 359 LFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp HTTTCCTTTBCCCCSCCCT
T ss_pred HHHHHHhhcccccCceecc
Confidence 4555666667778777753
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.5e-30 Score=256.35 Aligned_cols=290 Identities=15% Similarity=0.122 Sum_probs=169.1
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
++++|++++|++++ +| ++.+++|++|++++|.+++. + +..+++|++|++++|++++ +| ++.+++|++|+++
T Consensus 65 ~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 65 GLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA 135 (457)
T ss_dssp TCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred CCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence 45555555555543 22 44455555555555555432 2 4445555555555555543 22 4455555555555
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP 228 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p 228 (409)
+|.+++ ++ ++.+++|++|++++|...+.+ .+..+++|++|++++|.+++.+ +..+++|+.|++++|.+++ ++
T Consensus 136 ~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~-~~ 207 (457)
T 3bz5_A 136 RNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITK-LD 207 (457)
T ss_dssp TSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSC-CC
T ss_pred CCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCe-ec
Confidence 555543 21 444555555555555333333 2455566666666666666542 5566666666666666663 32
Q ss_pred hHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hc-------ccCcEEecccCCccccc
Q 048551 229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-AT-------SYSQRLNDDDQNHHGRQ 300 (409)
Q Consensus 229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~-------~l~~~L~l~~n~l~~~~ 300 (409)
+. .+++|++|++++|++++ +| +..+++|+.|++++|++++.+...+. +. .+ +.+++++|.+.|.+
T Consensus 208 --l~-~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L-~~L~l~~n~~~~~~ 280 (457)
T 3bz5_A 208 --LN-QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDL-LEIDLTHNTQLIYF 280 (457)
T ss_dssp --CT-TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCC-SCCCCTTCTTCCEE
T ss_pred --cc-cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCC-CEEECCCCccCCcc
Confidence 33 56777777777777775 44 66677777777777777766533322 21 12 44444544443211
Q ss_pred -----ccc-----------ccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceec
Q 048551 301 -----QNI-----------CYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGE 363 (409)
Q Consensus 301 -----~~l-----------~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~ 363 (409)
+.+ +.+|. ....|+.++++++++|++|++++|++++. + +..+++|++|++ +|++.+
T Consensus 281 ~~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~- 353 (457)
T 3bz5_A 281 QAEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD- 353 (457)
T ss_dssp ECTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-
T ss_pred cccccccCCEEECCCCcccceecc---CCCcceEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-
Confidence 111 22221 23456677788889999999999999974 3 889999999999 888876
Q ss_pred CCCCC-------------CCCCCCeecccCCCCceecCCC
Q 048551 364 VPTKG-------------VFNNKTRISLAGNGKLCGGFDG 390 (409)
Q Consensus 364 ~p~~~-------------~~~~L~~L~l~~Np~l~g~~p~ 390 (409)
++... .+..+..+++++| .++|.||.
T Consensus 354 l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N-~l~g~ip~ 392 (457)
T 3bz5_A 354 FSSVGKIPALNNNFEAEGQTITMPKETLTNN-SLTIAVSP 392 (457)
T ss_dssp CTTGGGSSGGGTSEEEEEEEEECCCBCCBTT-BEEEECCT
T ss_pred ccccccccccCCcEEecceeeecCccccccC-cEEEEcCh
Confidence 33211 1245678899999 89999997
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.2e-30 Score=267.31 Aligned_cols=312 Identities=21% Similarity=0.172 Sum_probs=219.5
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
+.+|++|+|++|+|++..|.+|.++++|++|+|++|++++..+..|.++++|++|++++|++++..+..|+++++|++|+
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 45899999999999977777899999999999999999977677899999999999999999976666799999999999
Q ss_pred eecccccc-cCCccccCCCCCcEEeCCCCCCCCCCCCCCCC---------------------------------------
Q 048551 147 FCVIKLTG-QLPASIQNLSSHLEADSNRNNFGGKIPESPGQ--------------------------------------- 186 (409)
Q Consensus 147 L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------- 186 (409)
+++|.+++ ..|..++.+++|++|++++|++++..+..+..
T Consensus 155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n 234 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 234 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred cccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcc
Confidence 99999975 46788899999999999999876433221110
Q ss_pred --------------------------------------------------------------------------------
Q 048551 187 -------------------------------------------------------------------------------- 186 (409)
Q Consensus 187 -------------------------------------------------------------------------------- 186 (409)
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 314 (635)
T 4g8a_A 235 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLV 314 (635)
T ss_dssp CSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEE
T ss_pred cccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccc
Confidence
Q ss_pred ------------CCCCcEEEccCCcCcccCc--------------------ccCCCCCCcEEEeecCcCcc--cCchHHh
Q 048551 187 ------------LRSLFYLNVGGNQFSGMFL--------------------PVYNLSSLEMIYLHDNRLNG--NLPPVIG 232 (409)
Q Consensus 187 ------------l~~L~~L~l~~n~l~~~~~--------------------~~~~l~~L~~L~l~~n~l~~--~~p~~~~ 232 (409)
..+++.|++.+|.+..... ....+++|+.+++++|.+.. ..+....
T Consensus 315 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 394 (635)
T 4g8a_A 315 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 394 (635)
T ss_dssp SCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHH
T ss_pred ccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchh
Confidence 1122333333332221110 11235667777777777642 2334443
Q ss_pred hCCCccceeeccccccccccch-------------------------hhhcCCCCCEEEcccCcCccccchhhh-hcccC
Q 048551 233 AKLPNLRKIVIALNNFTGPLPD-------------------------SFSNASNRERLELSYNQFRGKSIWRSA-ATSYS 286 (409)
Q Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~-------------------------~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~ 286 (409)
.+.+|+.+++..+.+.. .+. .+..+++++.+++++|.+.+.....+. ...+
T Consensus 395 -~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L- 471 (635)
T 4g8a_A 395 -GTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL- 471 (635)
T ss_dssp -SCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-
T ss_pred -hhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh-
Confidence 45555555555554432 222 234444455555555554443322222 2233
Q ss_pred cEEecccCCccccccccccCChhccCCCCCCccc-------------cCCCCCCCEEECcCCccccccchhhhcCCCCcE
Q 048551 287 QRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVL 353 (409)
Q Consensus 287 ~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 353 (409)
+.|++++|.+.+ ..+|..+..+++|++|+ |.++++|++|+|++|+|++..|..+..+++|++
T Consensus 472 ~~L~Ls~N~~~~-----~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 546 (635)
T 4g8a_A 472 EVLKMAGNSFQE-----NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 546 (635)
T ss_dssp CEEECTTCEEGG-----GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred hhhhhhhccccc-----ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence 566666665431 23455667777777777 667899999999999999888889999999999
Q ss_pred EEe-eccceecCCCC-CCC-CCCCeecccCCCCcee
Q 048551 354 LNL-YNHFDGEVPTK-GVF-NNKTRISLAGNGKLCG 386 (409)
Q Consensus 354 L~L-~n~l~~~~p~~-~~~-~~L~~L~l~~Np~l~g 386 (409)
|++ +|++++..|.. ..+ ++|+.|++++||+.|.
T Consensus 547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp EECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred EECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999 99999888876 455 6899999999999984
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=6.9e-30 Score=251.63 Aligned_cols=285 Identities=19% Similarity=0.169 Sum_probs=233.4
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
+.++++|++++|.+++ +| .+..+++|++|++++|.+++. | +..+++|++|++++|.+++ ++ ++.+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEE
Confidence 4599999999999995 46 799999999999999999964 4 8899999999999999996 44 89999999999
Q ss_pred eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCccc
Q 048551 147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGN 226 (409)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 226 (409)
+++|.+++ +| ++.+++|++|++++|++++. .++.+++|++|++++|...+.. .+..+++|+.|++++|.++ .
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~-~ 184 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKIT-E 184 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCC-C
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccc-e
Confidence 99999995 44 88999999999999999964 3889999999999999655544 5788999999999999999 4
Q ss_pred CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccC
Q 048551 227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYL 306 (409)
Q Consensus 227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~i 306 (409)
+| +. .+++|+.|++++|.+++. .+..+++|+.|++++|++++.++.. ++++ +.|++++|.+++ +
T Consensus 185 l~--l~-~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip~~~--l~~L-~~L~l~~N~l~~-------~ 248 (457)
T 3bz5_A 185 LD--VS-QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEIDVTP--LTQL-TYFDCSVNPLTE-------L 248 (457)
T ss_dssp CC--CT-TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCCCTT--CTTC-SEEECCSSCCSC-------C
T ss_pred ec--cc-cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccCccc--cCCC-CEEEeeCCcCCC-------c
Confidence 66 54 889999999999999965 3889999999999999999966322 4455 999999999984 2
Q ss_pred C-hhccCCC-------CCCccc-----------cCCCCCCCEEECcCCccccccch--------hhhcCCCCcEEEe-ec
Q 048551 307 P-TGISNLV-------NLDSLA-----------TDSLKSIEELDLSSNNLSGQLPR--------LLVNLSFLVLLNL-YN 358 (409)
Q Consensus 307 p-~~~~~l~-------~L~~L~-----------~~~l~~L~~L~Ls~N~l~~~~p~--------~~~~l~~L~~L~L-~n 358 (409)
| ..+..++ +|+.++ +..+++|+.|++++|+..+.+|. .+..+++|++|++ +|
T Consensus 249 ~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 249 DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred CHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence 2 1222221 334444 34568888888888887666664 2556788999999 88
Q ss_pred cceecCCCCCCCCCCCeecccCCCCcee
Q 048551 359 HFDGEVPTKGVFNNKTRISLAGNGKLCG 386 (409)
Q Consensus 359 ~l~~~~p~~~~~~~L~~L~l~~Np~l~g 386 (409)
++++. + ...+++|+.|++++| .+.|
T Consensus 329 ~l~~l-~-l~~l~~L~~L~l~~N-~l~~ 353 (457)
T 3bz5_A 329 ELTEL-D-VSHNTKLKSLSCVNA-HIQD 353 (457)
T ss_dssp CCSCC-C-CTTCTTCSEEECCSS-CCCB
T ss_pred ccccc-c-cccCCcCcEEECCCC-CCCC
Confidence 88874 4 467899999999999 6765
No 44
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=7e-30 Score=252.71 Aligned_cols=268 Identities=24% Similarity=0.310 Sum_probs=223.3
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCC-------------
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIP------------- 133 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p------------- 133 (409)
+.++++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++
T Consensus 89 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l 163 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSF 163 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEE
T ss_pred cccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-ChhhccCCcccEeec
Confidence 4589999999999985444 8899999999999999985433 8889999999999888774 22
Q ss_pred -------cccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcc
Q 048551 134 -------AEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLP 206 (409)
Q Consensus 134 -------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 206 (409)
..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+.+..| ++.+++|++|++++|.+++. +.
T Consensus 164 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~ 238 (466)
T 1o6v_A 164 GNQVTDLKPLANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-GT 238 (466)
T ss_dssp EESCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG
T ss_pred CCcccCchhhccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-hh
Confidence 125677889999999999884 3 358899999999999999987655 77899999999999999875 46
Q ss_pred cCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hccc
Q 048551 207 VYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSY 285 (409)
Q Consensus 207 ~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l 285 (409)
+..+++|+.|++++|.+++. ++ +. .+++|++|++++|.+++..+ +..+++|+.|++++|++++.+. +. ++++
T Consensus 239 l~~l~~L~~L~l~~n~l~~~-~~-~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 311 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNL-AP-LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNL 311 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCC-GG-GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred hhcCCCCCEEECCCCccccc-hh-hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCC
Confidence 78899999999999999854 44 54 89999999999999996544 8899999999999999998653 22 4555
Q ss_pred CcEEecccCCccccccccccCChhccCCCCCCccc-----------cCCCCCCCEEECcCCccccccchhhhcCCCCcEE
Q 048551 286 SQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLA-----------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLL 354 (409)
Q Consensus 286 ~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~-----------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 354 (409)
+.|++++|.++ + ++. +..+++|+.|+ +.++++|+.|++++|++++..| +..+++|+.|
T Consensus 312 -~~L~L~~n~l~------~-~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 312 -TYLTLYFNNIS------D-ISP-VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp -SEEECCSSCCS------C-CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred -CEEECcCCcCC------C-chh-hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence 99999999998 2 332 66778888887 5678999999999999998777 8899999999
Q ss_pred Ee-ecccee
Q 048551 355 NL-YNHFDG 362 (409)
Q Consensus 355 ~L-~n~l~~ 362 (409)
++ +|.+++
T Consensus 381 ~l~~n~~~~ 389 (466)
T 1o6v_A 381 GLNDQAWTN 389 (466)
T ss_dssp ECCCEEEEC
T ss_pred eccCCcccC
Confidence 99 888876
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=4.5e-31 Score=247.66 Aligned_cols=229 Identities=26% Similarity=0.399 Sum_probs=167.1
Q ss_pred CCCEEEccCCcccc--cCCccccCCCCCcEEEcCC-CcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEE
Q 048551 93 RLEKLILANNSFSG--TIPTNLSLRSKLMLFFANR-NILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEA 169 (409)
Q Consensus 93 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (409)
++++|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..++++++|++|++++|.+++.+|..+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--------- 121 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--------- 121 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG---------
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH---------
Confidence 45556666665555 4555555555555555552 55555555555555555555555555554444444
Q ss_pred eCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCC-ccceeeccccc
Q 048551 170 DSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLP-NLRKIVIALNN 247 (409)
Q Consensus 170 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~-~L~~L~L~~n~ 247 (409)
.++++|++|++++|.+++..+ .+..+++|++|++++|.+++.+|..++ .++ +|++|++++|.
T Consensus 122 ---------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 122 ---------------SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNR 185 (313)
T ss_dssp ---------------GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSE
T ss_pred ---------------hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCe
Confidence 444555555555555554444 566677777788888888888898888 777 99999999999
Q ss_pred cccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCC
Q 048551 248 FTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSI 327 (409)
Q Consensus 248 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L 327 (409)
+++.+|..+..++ |++|++++|++++ .+|..+ ..+++|
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~------------------------------~~~~~~-----------~~l~~L 223 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEG------------------------------DASVLF-----------GSDKNT 223 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEE------------------------------CCGGGC-----------CTTSCC
T ss_pred eeccCChHHhCCc-ccEEECcCCcccC------------------------------cCCHHH-----------hcCCCC
Confidence 9999999999987 9999999999874 334433 345788
Q ss_pred CEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCceecCCC
Q 048551 328 EELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCGGFDG 390 (409)
Q Consensus 328 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g~~p~ 390 (409)
++|++++|++++.+|. +..+++|++|++ +|++.+.+|.. ..+++|+.|++++| .++|.+|+
T Consensus 224 ~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~ip~ 286 (313)
T 1ogq_A 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQ 286 (313)
T ss_dssp SEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-EEEEECCC
T ss_pred CEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC-cccccCCC
Confidence 9999999999976665 888999999999 99999999976 78899999999999 79999997
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=4.9e-31 Score=246.55 Aligned_cols=276 Identities=20% Similarity=0.236 Sum_probs=205.4
Q ss_pred CCCCceeeecCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCcc--CCcc
Q 048551 58 NLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGE--IPAE 135 (409)
Q Consensus 58 ~~c~~~g~~c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~ 135 (409)
..|.|.++.| ++++++ .+|..+. ++|++|++++|.++...+..|..+++|++|++++|.++.. .+..
T Consensus 5 C~C~~~~l~c--------~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 73 (306)
T 2z66_A 5 CSCSGTEIRC--------NSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73 (306)
T ss_dssp CEEETTEEEC--------CSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH
T ss_pred CeeCCCEEEc--------CCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc
Confidence 3466665555 566677 6676554 6899999999999854445578999999999999998732 3566
Q ss_pred cCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCC-CCCCCCCCCcEEEccCCcCcccCc-ccCCCCCC
Q 048551 136 IGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIP-ESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSL 213 (409)
Q Consensus 136 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L 213 (409)
+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+ .+..+++|
T Consensus 74 ~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 74 DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp HHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred cccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 777899999999999988 577778899999999999999886554 578888999999999999888777 67888999
Q ss_pred cEEEeecCcCcc-cCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecc
Q 048551 214 EMIYLHDNRLNG-NLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDD 292 (409)
Q Consensus 214 ~~L~l~~n~l~~-~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~ 292 (409)
++|++++|.+++ .+|..+. .+++|++|++++|.+++..|..+..+++|++|++++|++++.+.
T Consensus 153 ~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------- 216 (306)
T 2z66_A 153 EVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT--------------- 216 (306)
T ss_dssp CEEECTTCEEGGGEECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS---------------
T ss_pred CEEECCCCccccccchhHHh-hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh---------------
Confidence 999999998885 3566665 78899999999999987778888889999999999998875321
Q ss_pred cCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCC-CCcEEEe-eccceecCCCC---
Q 048551 293 DQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLS-FLVLLNL-YNHFDGEVPTK--- 367 (409)
Q Consensus 293 ~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L-~n~l~~~~p~~--- 367 (409)
.. +..+++|++|++++|++++..|..+..++ +|++|++ +|.+.+..+..
T Consensus 217 ---------------~~-----------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~ 270 (306)
T 2z66_A 217 ---------------FP-----------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 270 (306)
T ss_dssp ---------------GG-----------GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHH
T ss_pred ---------------hh-----------ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHH
Confidence 11 23346667777777777777777777764 7777777 77766543321
Q ss_pred CCCCCCCeecccCCCCceec
Q 048551 368 GVFNNKTRISLAGNGKLCGG 387 (409)
Q Consensus 368 ~~~~~L~~L~l~~Np~l~g~ 387 (409)
..+...+.+.+..+...|..
T Consensus 271 ~~l~~~~~~~~~~~~~~C~~ 290 (306)
T 2z66_A 271 QWIKDQRQLLVEVERMECAT 290 (306)
T ss_dssp HHHHHTGGGBSCGGGCBEEE
T ss_pred HHHHhhhhhhccccccccCC
Confidence 22333444555555555544
No 47
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=4.1e-29 Score=237.53 Aligned_cols=267 Identities=22% Similarity=0.325 Sum_probs=219.6
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
|.++++|++++|.++ .++. +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEE
T ss_pred cCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEE
Confidence 569999999999999 4444 9999999999999999985 3 368999999999999999984 444 88999999999
Q ss_pred eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCccc
Q 048551 147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGN 226 (409)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 226 (409)
+++|..... +..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.++ .
T Consensus 139 l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~ 213 (347)
T 4fmz_A 139 LGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQIT-D 213 (347)
T ss_dssp CTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC-C
T ss_pred CCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCC-C
Confidence 999976644 4458999999999999999885443 7889999999999999987654 778899999999999998 4
Q ss_pred CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCcccccccccc
Q 048551 227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICY 305 (409)
Q Consensus 227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ 305 (409)
++. +. .+++|++|++++|.+++..+ +..+++|++|++++|++++.. .+. ++++ +.|++++|.++ .
T Consensus 214 ~~~-~~-~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L-~~L~l~~n~l~-------~ 279 (347)
T 4fmz_A 214 ITP-VA-NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKL-KMLNVGSNQIS-------D 279 (347)
T ss_dssp CGG-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTC-CEEECCSSCCC-------C
T ss_pred Cch-hh-cCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcCCCc-CEEEccCCccC-------C
Confidence 444 44 78999999999999985443 888999999999999988753 222 4455 89999999887 4
Q ss_pred CChhccCCCCCCccc-------------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccce
Q 048551 306 LPTGISNLVNLDSLA-------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFD 361 (409)
Q Consensus 306 ip~~~~~l~~L~~L~-------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~ 361 (409)
+ ..+..+++|+.|+ +.++++|++|++++|++++..| +..+++|++|++ +|.++
T Consensus 280 ~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 280 I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 4 3467778888887 4568999999999999997666 889999999999 77764
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=6.5e-29 Score=243.98 Aligned_cols=201 Identities=18% Similarity=0.160 Sum_probs=166.0
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
..+.++.++++++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3456677777887 7777665 688999999999987777888999999999999999987777788889999999999
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCC-cCcccCc-ccCCCCCCcEEEeecCcCccc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGN-QFSGMFL-PVYNLSSLEMIYLHDNRLNGN 226 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~l~~L~~L~l~~n~l~~~ 226 (409)
+|+++...+..|..+++|++|++++|.+.+..+..|.++++|++|++++| .+....+ .+.++++|+.|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 99998655567888999999999999988777778888999999999884 4454444 6788889999999999888 6
Q ss_pred CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccc
Q 048551 227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGK 275 (409)
Q Consensus 227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 275 (409)
+|. +. .+++|++|++++|.+++..|..|.++++|+.|++++|++++.
T Consensus 200 ~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 246 (440)
T 3zyj_A 200 IPN-LT-PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246 (440)
T ss_dssp CCC-CT-TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred ccc-cC-CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE
Confidence 764 44 788899999999999887788888899999999999888754
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=6.2e-29 Score=244.95 Aligned_cols=201 Identities=18% Similarity=0.159 Sum_probs=160.3
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
..+.++.++.+++ .+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3456677777777 6776554 678888888888887778888888888888888888887777788888888888888
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCC-cCcccCc-ccCCCCCCcEEEeecCcCccc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGN-QFSGMFL-PVYNLSSLEMIYLHDNRLNGN 226 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~l~~L~~L~l~~n~l~~~ 226 (409)
+|.+++..+..+..+++|++|++++|.+.+..+..|.++++|++|++++| .+....+ .+.++++|+.|++++|.++ .
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-D 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-S
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-c
Confidence 88888665666888888888888888888666677888888888888884 4444444 6778888888888888887 5
Q ss_pred CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccc
Q 048551 227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGK 275 (409)
Q Consensus 227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 275 (409)
+|. +. .+++|++|++++|.+++..|..|.++++|+.|++++|++++.
T Consensus 211 ~~~-~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 211 MPN-LT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CCC-CT-TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE
T ss_pred ccc-cc-ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE
Confidence 553 44 678888888888888877788888888888888888888754
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=3.6e-29 Score=236.19 Aligned_cols=231 Identities=20% Similarity=0.162 Sum_probs=201.7
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEE
Q 048551 90 NLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEA 169 (409)
Q Consensus 90 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (409)
..+++++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 78888888999999999999999 88988999999999999999998 789899999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccc
Q 048551 170 DSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFT 249 (409)
Q Consensus 170 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 249 (409)
++++|++.+.+|..+.. .. + ...+.++++|++|++++|.++ .+|..+. .+++|++|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~------~~-----~---~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------TD-----A---SGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE------EC---------CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh------cc-----c---hhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCC
Confidence 99998888788765543 11 1 114667899999999999999 8999887 8999999999999999
Q ss_pred cccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCE
Q 048551 250 GPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEE 329 (409)
Q Consensus 250 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~ 329 (409)
+ +|..+..+++|++|++++|++.+ .+|..+. ++++|++
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~------------------------------~~p~~~~-----------~l~~L~~ 257 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALR------------------------------NYPPIFG-----------GRAPLKR 257 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCC------------------------------BCCCCTT-----------CCCCCCE
T ss_pred c-CchhhccCCCCCEEECcCCcchh------------------------------hhHHHhc-----------CCCCCCE
Confidence 4 67789999999999999998874 5665544 4577899
Q ss_pred EECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCC
Q 048551 330 LDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGN 381 (409)
Q Consensus 330 L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~N 381 (409)
|++++|++.+.+|..+..+++|++|++ +|++.+.+|.. ..+++|+.+++..|
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 999999999999999999999999999 99999999987 88999999999877
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=5.8e-29 Score=230.08 Aligned_cols=265 Identities=20% Similarity=0.252 Sum_probs=208.1
Q ss_pred CcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeec
Q 048551 70 LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCV 149 (409)
Q Consensus 70 l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~ 149 (409)
.+++++++++++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 367888999998 677554 47899999999999977778899999999999999999977788899999999999999
Q ss_pred cc-ccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccC
Q 048551 150 IK-LTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNL 227 (409)
Q Consensus 150 n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~ 227 (409)
|. ++...|..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+ .+..+++|+.|++++|.++ .+
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-cc
Confidence 97 776668889999999999999999998888889999999999999999998776 6888999999999999998 55
Q ss_pred chH-HhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccC
Q 048551 228 PPV-IGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYL 306 (409)
Q Consensus 228 p~~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~i 306 (409)
+.. +. .+++|++|++++|.+++..|..+..+++|+.|++++|++++ +
T Consensus 169 ~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------------~ 216 (285)
T 1ozn_A 169 PERAFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-------------------------------L 216 (285)
T ss_dssp CTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-------------------------------C
T ss_pred CHHHhc-CccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-------------------------------C
Confidence 554 54 78999999999999998888888899999999999998874 3
Q ss_pred ChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC---CCCCCCCeecccCC
Q 048551 307 PTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK---GVFNNKTRISLAGN 381 (409)
Q Consensus 307 p~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~---~~~~~L~~L~l~~N 381 (409)
+... +..+++|++|++++|.+....+.. .-...++.+.. .+.+....|.. ..+..++..++.||
T Consensus 217 ~~~~----------~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 217 PTEA----------LAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp CHHH----------HTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred CHHH----------cccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 3221 234567788889988887544321 11123444456 66676666653 22334444444443
No 52
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=9.6e-29 Score=228.61 Aligned_cols=235 Identities=19% Similarity=0.165 Sum_probs=202.8
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCc-CCccCCcccCCCCCCcEEEe
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI-LAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~L 147 (409)
++++|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|. ++...|..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 79999999999997777889999999999999999998889999999999999999997 87666888999999999999
Q ss_pred ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCccc
Q 048551 148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGN 226 (409)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~ 226 (409)
++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+ .+..+++|+.|++++|.+++.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 9999998778889999999999999999997777779999999999999999998877 688999999999999999977
Q ss_pred CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccC
Q 048551 227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYL 306 (409)
Q Consensus 227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~i 306 (409)
.|..+. .+++|++|++++|.+++..+..+..+++|+.|++++|++............+ +.+....+.+. ...
T Consensus 193 ~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l-~~~~~~~~~~~------c~~ 264 (285)
T 1ozn_A 193 HPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL-QKFRGSSSEVP------CSL 264 (285)
T ss_dssp CTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH-HHCCSEECCCB------EEE
T ss_pred CHhHcc-CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH-HhcccccCccc------cCC
Confidence 777776 8999999999999999877778999999999999999998654111111111 44555666666 456
Q ss_pred Chhcc
Q 048551 307 PTGIS 311 (409)
Q Consensus 307 p~~~~ 311 (409)
|..+.
T Consensus 265 p~~l~ 269 (285)
T 1ozn_A 265 PQRLA 269 (285)
T ss_dssp SGGGT
T ss_pred chHhC
Confidence 66543
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=241.35 Aligned_cols=248 Identities=18% Similarity=0.157 Sum_probs=207.4
Q ss_pred CCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCC
Q 048551 93 RLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSN 172 (409)
Q Consensus 93 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 172 (409)
..+.++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3567888899998 6787664 789999999999998778889999999999999999998777899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccc
Q 048551 173 RNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGP 251 (409)
Q Consensus 173 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 251 (409)
+|++++..+..|..+++|++|++++|.++...+ .+.++++|+.|++++|...+.++...+..+++|++|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 999997777789999999999999999998887 88899999999999965555777755558999999999999998 4
Q ss_pred cchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEE
Q 048551 252 LPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELD 331 (409)
Q Consensus 252 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~ 331 (409)
+| .+..+++|++|++++|++++. .|.. |.++++|+.|+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~------------------------------~~~~-----------~~~l~~L~~L~ 237 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAI------------------------------RPGS-----------FQGLMHLQKLW 237 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEE------------------------------CTTT-----------TTTCTTCCEEE
T ss_pred cc-ccCCCcccCEEECCCCccCcc------------------------------Chhh-----------hccCccCCEEE
Confidence 55 478899999999999998753 2222 33456778888
Q ss_pred CcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCcee
Q 048551 332 LSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCG 386 (409)
Q Consensus 332 Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g 386 (409)
+++|+|++..+..|..+++|++|+| +|++++..+.. ..+++|+.|++++||+.|.
T Consensus 238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 8888888777788888888888888 77777555443 6678888888888887763
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.2e-29 Score=240.10 Aligned_cols=257 Identities=14% Similarity=0.131 Sum_probs=213.7
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
++++|++++|++++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..++.+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 89999999999996666689999999999999999998888889999999999999999995444458999999999999
Q ss_pred cccccccCCc--cccCCCCCcEEeCCCC-CCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCc
Q 048551 149 VIKLTGQLPA--SIQNLSSHLEADSNRN-NFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLN 224 (409)
Q Consensus 149 ~n~l~~~~p~--~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~ 224 (409)
+|.++ .+|. .+.++++|++|++++| .+.+..+..+.++++|++|++++|.+++..+ .+.++++|++|++++|.++
T Consensus 133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 133 GNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 99999 4554 7899999999999999 4776667889999999999999999999877 8999999999999999997
Q ss_pred ccCchHHhhCCCccceeeccccccccccchhh---hcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCcccccc
Q 048551 225 GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSF---SNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQ 301 (409)
Q Consensus 225 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~ 301 (409)
.+|..+...+++|++|++++|.+++..+..+ .....++.++++++.+++..+
T Consensus 212 -~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l------------------------ 266 (353)
T 2z80_A 212 -LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL------------------------ 266 (353)
T ss_dssp -THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH------------------------
T ss_pred -cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch------------------------
Confidence 7777766578999999999999997655443 345678888888887765321
Q ss_pred ccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchh-hhcCCCCcEEEe-eccceecCC
Q 048551 302 NICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRL-LVNLSFLVLLNL-YNHFDGEVP 365 (409)
Q Consensus 302 ~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L-~n~l~~~~p 365 (409)
..+|..+. .+++|++|++++|+++ .+|.. +..+++|++|++ +|.+.+..|
T Consensus 267 --~~l~~~l~-----------~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 267 --FQVMKLLN-----------QISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp --HHHHHHHH-----------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred --hhhHHHHh-----------cccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 13444443 3467789999999998 45554 588899999999 888877655
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.8e-28 Score=240.28 Aligned_cols=248 Identities=18% Similarity=0.140 Sum_probs=205.8
Q ss_pred CCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCC
Q 048551 93 RLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSN 172 (409)
Q Consensus 93 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 172 (409)
..+.++.++..++ .+|..+. +++++|++++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3567888888888 6776554 689999999999998888899999999999999999998888899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccc
Q 048551 173 RNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGP 251 (409)
Q Consensus 173 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 251 (409)
+|.+++..+..|.++++|++|++++|.++...+ .+.++++|+.|++++|...+.++...+..+++|++|++++|.+++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 999997777779999999999999999998877 888999999999999655557777655589999999999999985
Q ss_pred cchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEE
Q 048551 252 LPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELD 331 (409)
Q Consensus 252 ~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~ 331 (409)
+| .+..+++|++|++++|++++. .|..+ .++++|+.|+
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~------------------------------~~~~~-----------~~l~~L~~L~ 248 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEI------------------------------RPGSF-----------HGLSSLKKLW 248 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEE------------------------------CGGGG-----------TTCTTCCEEE
T ss_pred cc-cccccccccEEECcCCcCccc------------------------------Ccccc-----------cCccCCCEEE
Confidence 44 478899999999999998753 23232 3446778888
Q ss_pred CcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCCCCCCeecccCCCCcee
Q 048551 332 LSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVFNNKTRISLAGNGKLCG 386 (409)
Q Consensus 332 Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~~~L~~L~l~~Np~l~g 386 (409)
+++|++++..+..+..+++|++|+| +|++.+..+.. ..+++|+.|++++||+-|.
T Consensus 249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 249 VMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred eCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 8888888777778888888888888 77776554443 5678888888888887663
No 56
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=9.1e-28 Score=236.31 Aligned_cols=287 Identities=23% Similarity=0.260 Sum_probs=155.4
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
++++|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .++.+++|++|+++
T Consensus 92 ~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 92 HLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp TCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence 67777777777774 5543 3567777777776663 2221 1567777777777764 55 46777777777777
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP 228 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p 228 (409)
+|++++ +|..+ .+|++|++++|.+++ +| .++++++|++|++++|.+++.+.. .++|+.|++++|.++ .+|
T Consensus 162 ~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~-~lp 231 (454)
T 1jl5_A 162 NNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILE-ELP 231 (454)
T ss_dssp SSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-SCC
T ss_pred CCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCC-ccc
Confidence 777763 45432 366777777777664 44 466677777777777766654321 136666666666666 555
Q ss_pred hHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccc--cc-ccccc
Q 048551 229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHG--RQ-QNICY 305 (409)
Q Consensus 229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~--~~-~~l~~ 305 (409)
. +. .+++|++|++++|++++ +|.. +++|+.|++++|++++.+.. ..++ +.|++++|.+++ .. +.+..
T Consensus 232 ~-~~-~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L-~~L~ls~N~l~~l~~~~~~L~~ 301 (454)
T 1jl5_A 232 E-LQ-NLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPEL---PQSL-TFLDVSENIFSGLSELPPNLYY 301 (454)
T ss_dssp C-CT-TCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCCC---CTTC-CEEECCSSCCSEESCCCTTCCE
T ss_pred c-cC-CCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccccCcc---cCcC-CEEECcCCccCcccCcCCcCCE
Confidence 3 44 56666666666666663 3322 25566666666666553311 1122 555555555542 00 00000
Q ss_pred CC------hhccCC-CCCCccccC---------CCCCCCEEECcCCccccccchhhhcCCCCcEEEe-ecccee--cCCC
Q 048551 306 LP------TGISNL-VNLDSLATD---------SLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDG--EVPT 366 (409)
Q Consensus 306 ip------~~~~~l-~~L~~L~~~---------~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~--~~p~ 366 (409)
+. ..+..+ ++|+.|+++ .+++|++|++++|+++ .+|. .+++|++|++ +|++.+ .+|.
T Consensus 302 L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 302 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp EECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred EECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChH
Confidence 00 001112 355555522 2467888888888887 4555 4678888888 788877 5665
Q ss_pred C-CCC-------------CCCCeecccCCCCcee--cCCC
Q 048551 367 K-GVF-------------NNKTRISLAGNGKLCG--GFDG 390 (409)
Q Consensus 367 ~-~~~-------------~~L~~L~l~~Np~l~g--~~p~ 390 (409)
. ..+ ++|+.|++++| .+.| .+|.
T Consensus 378 ~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~~~~iP~ 416 (454)
T 1jl5_A 378 SVEDLRMNSHLAEVPELPQNLKQLHVETN-PLREFPDIPE 416 (454)
T ss_dssp TCCEEECCC-------------------------------
T ss_pred HHHhhhhcccccccccccCcCCEEECCCC-cCCccccchh
Confidence 4 444 67888888888 4655 6664
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=1.3e-30 Score=244.39 Aligned_cols=217 Identities=14% Similarity=0.133 Sum_probs=152.7
Q ss_pred CCCCCCCCCCceee--ec--CCCcEEEecCCCCccccCccccCCCCCCEEEccCCccc-ccCCcccc-------CCCCCc
Q 048551 52 SLTNSVNLCEWTGV--TC--ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFS-GTIPTNLS-------LRSKLM 119 (409)
Q Consensus 52 ~w~~~~~~c~~~g~--~c--~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~ 119 (409)
.|.....|+.+..+ .| .+++++++++|.+ .+|..+... |++|++++|.++ ..+|..+. ++++|+
T Consensus 23 ~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~ 98 (312)
T 1wwl_A 23 DWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98 (312)
T ss_dssp CGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCC
T ss_pred chHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCcc
Confidence 45444444444332 22 2678888888888 677666544 888888888884 44565554 688888
Q ss_pred EEEcCCCcCCccCCccc--CCCCCCcEEEeecccccccCCccccCC-----CCCcEEeCCCCCCCCCCCCCCCCCCCCcE
Q 048551 120 LFFANRNILAGEIPAEI--GNLFKLEKLSFCVIKLTGQLPASIQNL-----SSHLEADSNRNNFGGKIPESPGQLRSLFY 192 (409)
Q Consensus 120 ~L~l~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 192 (409)
+|++++|.+++.+|..+ +.+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..|..++++++|++
T Consensus 99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177 (312)
T ss_dssp EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE
T ss_pred EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE
Confidence 88888888888788775 7888888888888888865 7777766 78888888888888777778888888888
Q ss_pred EEccCCcCccc---Ccc--cCCCCCCcEEEeecCcCcc--cCchHHhhCCCccceeeccccccccccc-hhhhcCCCCCE
Q 048551 193 LNVGGNQFSGM---FLP--VYNLSSLEMIYLHDNRLNG--NLPPVIGAKLPNLRKIVIALNNFTGPLP-DSFSNASNRER 264 (409)
Q Consensus 193 L~l~~n~l~~~---~~~--~~~l~~L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~ 264 (409)
|++++|.+.+. ++. +..+++|++|++++|.+++ .++..++..+++|++|++++|.+++..| ..+..+++|++
T Consensus 178 L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257 (312)
T ss_dssp EECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred EECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence 88888887654 222 3677778888888877762 2333443466777777777777776553 34455667777
Q ss_pred EEcccCcCc
Q 048551 265 LELSYNQFR 273 (409)
Q Consensus 265 L~Ls~N~l~ 273 (409)
|++++|+++
T Consensus 258 L~Ls~N~l~ 266 (312)
T 1wwl_A 258 LNLSFTGLK 266 (312)
T ss_dssp EECTTSCCS
T ss_pred EECCCCccC
Confidence 777777665
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-27 Score=219.74 Aligned_cols=215 Identities=23% Similarity=0.278 Sum_probs=190.2
Q ss_pred CCCCCceeeecC---CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCC
Q 048551 57 VNLCEWTGVTCA---SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIP 133 (409)
Q Consensus 57 ~~~c~~~g~~c~---~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 133 (409)
.+.|.|.|+.|. +.+.+++++++++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++...+
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 478999999886 6889999999999 6787665 689999999999997777789999999999999999995555
Q ss_pred cccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCC
Q 048551 134 AEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSS 212 (409)
Q Consensus 134 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~ 212 (409)
..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++.++ .+..+++
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence 567899999999999999997666778999999999999999998888889999999999999999998877 6889999
Q ss_pred CcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccc
Q 048551 213 LEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGK 275 (409)
Q Consensus 213 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 275 (409)
|+.|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|+.|++++|++...
T Consensus 159 L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 159 LKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred cceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 999999999999 55554334899999999999999977667789999999999999998653
No 59
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.7e-28 Score=241.59 Aligned_cols=185 Identities=23% Similarity=0.222 Sum_probs=86.5
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCC-------------cEEEcCCCcCCccCCcc
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKL-------------MLFFANRNILAGEIPAE 135 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------~~L~l~~n~l~~~~p~~ 135 (409)
++++|++++|++ |.+|..++++++|++|++++|.+++.+|..++.+++| ++|++++|.+++ +|..
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~ 89 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence 677777777777 5777777777777777777777777777777666543 666776666663 3432
Q ss_pred cCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcE
Q 048551 136 IGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEM 215 (409)
Q Consensus 136 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~ 215 (409)
.++|++|++++|.+++ +|.. .++|++|++++|.+++ ++.. .++|++|++++|.+++.+ .+.++++|++
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred ---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 2456666666666663 4432 2455555555555542 2211 134555555555555422 3455555555
Q ss_pred EEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCcc
Q 048551 216 IYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRG 274 (409)
Q Consensus 216 L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 274 (409)
|++++|.++ .+|.. .++|++|++++|.+++ +| .+.++++|++|++++|++++
T Consensus 158 L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 158 IDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK 209 (454)
T ss_dssp EECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS
T ss_pred EECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc
Confidence 555555554 23322 2345555555555543 33 34555555555555555544
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=2.3e-28 Score=248.23 Aligned_cols=272 Identities=23% Similarity=0.282 Sum_probs=208.5
Q ss_pred CCCCCCCCCCCCceeeec--------C--CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCc
Q 048551 50 TSSLTNSVNLCEWTGVTC--------A--SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLM 119 (409)
Q Consensus 50 ~~~w~~~~~~c~~~g~~c--------~--~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 119 (409)
+..|....++|.|.+..| . +++.|++++|+++ .+|..+. ++|++|++++|.++ .+|. .+++|+
T Consensus 12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~ 84 (622)
T 3g06_A 12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELR 84 (622)
T ss_dssp HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCC
T ss_pred HHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCC
Confidence 345766678889866432 1 7999999999999 8887776 89999999999999 5665 579999
Q ss_pred EEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCc
Q 048551 120 LFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQ 199 (409)
Q Consensus 120 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 199 (409)
+|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++|++++ +|.. +++|++|++++|.
T Consensus 85 ~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~ 152 (622)
T 3g06_A 85 TLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQ 152 (622)
T ss_dssp EEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC
T ss_pred EEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCc
Confidence 9999999998 5775 6799999999999998 4565 56889999999999984 5553 4899999999999
Q ss_pred CcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchh
Q 048551 200 FSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWR 279 (409)
Q Consensus 200 l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~ 279 (409)
+++.+. ...+|+.|++++|.++ .+| . .+++|+.|++++|.+++ +|. .+++|+.|++++|.++..+..
T Consensus 153 l~~l~~---~~~~L~~L~L~~N~l~-~l~---~-~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~~~- 219 (622)
T 3g06_A 153 LASLPA---LPSELCKLWAYNNQLT-SLP---M-LPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLPAL- 219 (622)
T ss_dssp CSCCCC---CCTTCCEEECCSSCCS-CCC---C-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCC-
T ss_pred CCCcCC---ccCCCCEEECCCCCCC-CCc---c-cCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccCCC-
Confidence 987643 3468999999999998 677 2 57899999999999984 454 247899999999999875521
Q ss_pred hhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-ec
Q 048551 280 SAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YN 358 (409)
Q Consensus 280 ~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n 358 (409)
.+++ +.|++++|.++ .+|. . +++|+.|++++|+|+ .+|. .+++|++|++ +|
T Consensus 220 --~~~L-~~L~Ls~N~L~-------~lp~---~-----------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N 271 (622)
T 3g06_A 220 --PSGL-KELIVSGNRLT-------SLPV---L-----------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRN 271 (622)
T ss_dssp --CTTC-CEEECCSSCCS-------CCCC---C-----------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS
T ss_pred --CCCC-CEEEccCCccC-------cCCC---C-----------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCC
Confidence 2334 89999999887 4652 1 255677777777776 3444 4566777777 55
Q ss_pred cceecCCCC-CCCCCCCeecccCCC
Q 048551 359 HFDGEVPTK-GVFNNKTRISLAGNG 382 (409)
Q Consensus 359 ~l~~~~p~~-~~~~~L~~L~l~~Np 382 (409)
++. .+|.. ..+++|+.|++++||
T Consensus 272 ~L~-~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 272 QLT-RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCC-SCCGGGGGSCTTCEEECCSCC
T ss_pred CCC-cCCHHHhhccccCEEEecCCC
Confidence 555 45544 566777777777774
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.9e-28 Score=227.64 Aligned_cols=247 Identities=21% Similarity=0.194 Sum_probs=207.6
Q ss_pred CCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeeccccccc--CCccccCCCCCcEEeC
Q 048551 94 LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQ--LPASIQNLSSHLEADS 171 (409)
Q Consensus 94 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~l 171 (409)
-+.++.+++.++ .+|..+. ++|++|++++|.++...+..|+.+++|++|++++|.++.. .+..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 357899999998 6776553 7899999999999944344579999999999999999833 3667788999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc--ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccc
Q 048551 172 NRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL--PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFT 249 (409)
Q Consensus 172 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 249 (409)
++|.+. .+|..+..+++|++|++++|.+++..+ .+..+++|+.|++++|.+++..+..+. .+++|++|++++|.++
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCCccc
Confidence 999998 566678899999999999999988765 688899999999999999866666665 8899999999999998
Q ss_pred c-ccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCC
Q 048551 250 G-PLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIE 328 (409)
Q Consensus 250 ~-~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~ 328 (409)
+ ..|..+..+++|++|++++|++++. .|..+ ..+++|+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~------------------------------~~~~~-----------~~l~~L~ 202 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQL------------------------------SPTAF-----------NSLSSLQ 202 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEE------------------------------CTTTT-----------TTCTTCC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCc------------------------------CHHHh-----------cCCCCCC
Confidence 6 5788899999999999999998742 23333 3457889
Q ss_pred EEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCC-CCCCeecccCCCCcee
Q 048551 329 ELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVF-NNKTRISLAGNGKLCG 386 (409)
Q Consensus 329 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~-~~L~~L~l~~Np~l~g 386 (409)
+|++++|++++..+..+..+++|++|++ +|++.+..|.. ..+ ++|+.|++++||.-|+
T Consensus 203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred EEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 9999999999877778999999999999 99999888875 566 4999999999976653
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=3.2e-30 Score=242.29 Aligned_cols=266 Identities=14% Similarity=0.101 Sum_probs=181.5
Q ss_pred CcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeec
Q 048551 70 LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCV 149 (409)
Q Consensus 70 l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~ 149 (409)
++..+++.+.+...+...+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4555666676664444555667788888888888887666778888888888888888875444 78888888888888
Q ss_pred ccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCc
Q 048551 150 IKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLP 228 (409)
Q Consensus 150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p 228 (409)
|.+++ ++ ..++|++|++++|.+++..+.. +++|++|++++|.+++..+ .+..+++|+.|++++|.+++..+
T Consensus 90 n~l~~-l~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQE-LL----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEE-EE----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccc-cc----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 88873 22 3478888888888887655443 5678888888888888766 77778888888888888886555
Q ss_pred hHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCCh
Q 048551 229 PVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPT 308 (409)
Q Consensus 229 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~ 308 (409)
..+...+++|++|++++|.+++. +. ...+++|++|++++|++++.+.....++++ +.|++++|.++ .+|.
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L-~~L~L~~N~l~-------~l~~ 231 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGV-TWISLRNNKLV-------LIEK 231 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTC-SEEECTTSCCC-------EECT
T ss_pred HHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcc-cEEECcCCccc-------chhh
Confidence 55544678888888888888754 32 334788888888888887654221113333 55555555554 3444
Q ss_pred hccCCCCCCccccCCCCCCCEEECcCCccc-cccchhhhcCCCCcEEEe-e-ccceecCCC
Q 048551 309 GISNLVNLDSLATDSLKSIEELDLSSNNLS-GQLPRLLVNLSFLVLLNL-Y-NHFDGEVPT 366 (409)
Q Consensus 309 ~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L-~-n~l~~~~p~ 366 (409)
.+. .+++|+.|++++|+++ +.+|..+..++.|+.+++ + +.+.+..|.
T Consensus 232 ~~~-----------~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 232 ALR-----------FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TCC-----------CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred Hhh-----------cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 332 2355566666666666 555666666666666666 2 334444443
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=7.8e-30 Score=239.11 Aligned_cols=247 Identities=20% Similarity=0.230 Sum_probs=186.4
Q ss_pred cccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCC-ccCCcccC-------CCCCCcEEEeecccccccCCc
Q 048551 87 ELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILA-GEIPAEIG-------NLFKLEKLSFCVIKLTGQLPA 158 (409)
Q Consensus 87 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~ 158 (409)
.++..++|++|++++|.+ .+|..+... |++|++++|.++ +.+|..+. ++++|++|++++|.+++.+|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 345567788899999988 677766544 888899988884 45666555 688899999999999888888
Q ss_pred cc--cCCCCCcEEeCCCCCCCCCCCCCCCCC-----CCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCccc--Cc
Q 048551 159 SI--QNLSSHLEADSNRNNFGGKIPESPGQL-----RSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGN--LP 228 (409)
Q Consensus 159 ~l--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~--~p 228 (409)
.+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+ .+.++++|++|++++|++.+. ++
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 76 7888999999999988866 6666655 888889998888888776 788888888888888887754 23
Q ss_pred hHH-hhCCCccceeecccccccc--ccc-hhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccc
Q 048551 229 PVI-GAKLPNLRKIVIALNNFTG--PLP-DSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNIC 304 (409)
Q Consensus 229 ~~~-~~~l~~L~~L~L~~n~l~~--~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~ 304 (409)
..+ +..+++|++|++++|++++ .++ ..+..+++|++|++++|++++.
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----------------------------- 243 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA----------------------------- 243 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS-----------------------------
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc-----------------------------
Confidence 333 1277888888888888873 122 3346778888888888888752
Q ss_pred cCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCCeecccCCC
Q 048551 305 YLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGNG 382 (409)
Q Consensus 305 ~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~~L~l~~Np 382 (409)
.|... +..+++|++|++++|+|+ .+|..+. ++|++|++ +|++.+. |....+++|+.|++++||
T Consensus 244 -~~~~~----------~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 244 -AGAPS----------CDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp -CCCSC----------CCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred -cchhh----------hhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence 22111 223477899999999998 6777665 78999999 7777765 656778889999999995
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2e-28 Score=230.00 Aligned_cols=244 Identities=15% Similarity=0.123 Sum_probs=196.8
Q ss_pred CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
.++++|++++|++++..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEEC
Confidence 389999999999997777899999999999999999986654 8999999999999999984 33 3489999999
Q ss_pred ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-cc-CCCCCCcEEEeecCcCcc
Q 048551 148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PV-YNLSSLEMIYLHDNRLNG 225 (409)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~-~~l~~L~~L~l~~n~l~~ 225 (409)
++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ .+ ..+++|++|++++|.++
T Consensus 107 ~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~- 182 (317)
T 3o53_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182 (317)
T ss_dssp CSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-
T ss_pred CCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-
Confidence 99999865443 46789999999999998878889999999999999999998766 44 47899999999999998
Q ss_pred cCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCcccccccccc
Q 048551 226 NLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICY 305 (409)
Q Consensus 226 ~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ 305 (409)
.++... .+++|++|++++|.+++ +|..+..+++|++|++++|++++.+.....++++ +.|++++|.+.. +.
T Consensus 183 ~~~~~~--~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L-~~L~l~~N~~~~-----~~ 253 (317)
T 3o53_A 183 DVKGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL-EHFDLRGNGFHC-----GT 253 (317)
T ss_dssp EEECCC--CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC-CEEECTTCCCBH-----HH
T ss_pred cccccc--ccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCC-CEEEccCCCccC-----cC
Confidence 555443 48999999999999995 5556899999999999999999765321124555 999999999872 14
Q ss_pred CChhccCCCCCCccccCCCCCCCEEECc-CCccccccc
Q 048551 306 LPTGISNLVNLDSLATDSLKSIEELDLS-SNNLSGQLP 342 (409)
Q Consensus 306 ip~~~~~l~~L~~L~~~~l~~L~~L~Ls-~N~l~~~~p 342 (409)
+|.++..+ +.|+.|+++ .+.++|..|
T Consensus 254 ~~~~~~~~-----------~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 254 LRDFFSKN-----------QRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHTC-----------HHHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhcc-----------ccceEEECCCchhccCCch
Confidence 45555554 444566666 334454433
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1.2e-29 Score=250.54 Aligned_cols=274 Identities=18% Similarity=0.128 Sum_probs=119.3
Q ss_pred CCEEEccCCcccc----cCCccccCCCCCcEEEcCCCcCCccCCccc-----CCCCCCcEEEeeccccccc----CCccc
Q 048551 94 LEKLILANNSFSG----TIPTNLSLRSKLMLFFANRNILAGEIPAEI-----GNLFKLEKLSFCVIKLTGQ----LPASI 160 (409)
Q Consensus 94 L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~----~p~~l 160 (409)
|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++. ++..+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 4444444444442 224444444444444444444442222111 1123444444444444432 12333
Q ss_pred cCCCCCcEEeCCCCCCCCCCCCCCC-----CCCCCcEEEccCCcCcccC----c-ccCCCCCCcEEEeecCcCcccC---
Q 048551 161 QNLSSHLEADSNRNNFGGKIPESPG-----QLRSLFYLNVGGNQFSGMF----L-PVYNLSSLEMIYLHDNRLNGNL--- 227 (409)
Q Consensus 161 ~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~----~-~~~~l~~L~~L~l~~n~l~~~~--- 227 (409)
..+++|++|++++|.+.+..+..+. ..++|++|++++|.++... + .+..+++|++|++++|.+++..
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 246 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAE 246 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHH
Confidence 3444555555555544322111111 1234555555555544321 1 3334455555555555544221
Q ss_pred -chHHhhCCCccceeeccccccccc----cchhhhcCCCCCEEEcccCcCccccchhhh------hcccCcEEecccCCc
Q 048551 228 -PPVIGAKLPNLRKIVIALNNFTGP----LPDSFSNASNRERLELSYNQFRGKSIWRSA------ATSYSQRLNDDDQNH 296 (409)
Q Consensus 228 -p~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~------l~~l~~~L~l~~n~l 296 (409)
.+.+...+++|++|++++|.+++. ++..+..+++|++|++++|++++.....+. .+++ +.|++++|.+
T Consensus 247 l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L-~~L~L~~n~l 325 (461)
T 1z7x_W 247 LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL-ESLWVKSCSF 325 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC-CEEECTTSCC
T ss_pred HHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccc-eeeEcCCCCC
Confidence 111211345555555555555432 344444455555555555555443321111 0133 5555555555
Q ss_pred cccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhc-----CCCCcEEEe-ecccee----cCCC
Q 048551 297 HGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVN-----LSFLVLLNL-YNHFDG----EVPT 366 (409)
Q Consensus 297 ~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L-~n~l~~----~~p~ 366 (409)
++. ....++..+..+ ++|++|++++|++++..+..+.. .++|++|++ +|++.+ .+|.
T Consensus 326 ~~~--~~~~l~~~l~~~-----------~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 326 TAA--CCSHFSSVLAQN-----------RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp BGG--GHHHHHHHHHHC-----------SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred chH--HHHHHHHHHhhC-----------CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 410 000123333333 55566666666665444433332 445666666 555543 3343
Q ss_pred C-CCCCCCCeecccCC
Q 048551 367 K-GVFNNKTRISLAGN 381 (409)
Q Consensus 367 ~-~~~~~L~~L~l~~N 381 (409)
. ..+++|++|++++|
T Consensus 393 ~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 393 TLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHCCCCCEEECCSS
T ss_pred HHHhCCCccEEECCCC
Confidence 2 34556666666666
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=7.7e-29 Score=244.64 Aligned_cols=296 Identities=13% Similarity=0.066 Sum_probs=229.0
Q ss_pred CCcEEEecCCCCcc----ccCccccCCCCCCEEEccCCcccccCCcccc-----CCCCCcEEEcCCCcCCccC----Ccc
Q 048551 69 SLRFINIADNGVQG----EIPNELGNLVRLEKLILANNSFSGTIPTNLS-----LRSKLMLFFANRNILAGEI----PAE 135 (409)
Q Consensus 69 ~l~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~----p~~ 135 (409)
++++|++++|++++ .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.. +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 69999999999984 5688899999999999999999865444332 3568999999999998643 556
Q ss_pred cCCCCCCcEEEeecccccccCCcccc-----CCCCCcEEeCCCCCCCCC----CCCCCCCCCCCcEEEccCCcCcccC--
Q 048551 136 IGNLFKLEKLSFCVIKLTGQLPASIQ-----NLSSHLEADSNRNNFGGK----IPESPGQLRSLFYLNVGGNQFSGMF-- 204 (409)
Q Consensus 136 ~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-- 204 (409)
+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 67789999999999999865444443 366999999999999853 4566677899999999999987642
Q ss_pred ---c-ccCCCCCCcEEEeecCcCccc----CchHHhhCCCccceeeccccccccccchhhhc-----CCCCCEEEcccCc
Q 048551 205 ---L-PVYNLSSLEMIYLHDNRLNGN----LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSN-----ASNRERLELSYNQ 271 (409)
Q Consensus 205 ---~-~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~Ls~N~ 271 (409)
+ .+..+++|+.|++++|.+++. ++..+. .+++|++|++++|.+++..+..+.. .++|++|++++|.
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 2 233689999999999999853 566666 6899999999999998665554433 3699999999999
Q ss_pred Cccccchhhh-----hcccCcEEecccCCccccccccccCChhccCCCCCCccccC-CCCCCCEEECcCCcccc----cc
Q 048551 272 FRGKSIWRSA-----ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATD-SLKSIEELDLSSNNLSG----QL 341 (409)
Q Consensus 272 l~~~~~~~~~-----l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~-~l~~L~~L~Ls~N~l~~----~~ 341 (409)
+++.....+. .+++ +.|++++|.++ +..+..+... +. ..++|++|++++|++++ .+
T Consensus 325 l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~i~------~~~~~~l~~~-------l~~~~~~L~~L~L~~n~i~~~~~~~l 390 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFL-LELQISNNRLE------DAGVRELCQG-------LGQPGSVLRVLWLADCDVSDSSCSSL 390 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSC-CEEECCSSBCH------HHHHHHHHHH-------HTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred CchHHHHHHHHHHhhCCCc-cEEEccCCccc------cccHHHHHHH-------HcCCCCceEEEECCCCCCChhhHHHH
Confidence 9886532222 3455 99999999887 2323322210 11 14688999999999996 78
Q ss_pred chhhhcCCCCcEEEe-eccceec--------CCCCCCCCCCCeecccCC
Q 048551 342 PRLLVNLSFLVLLNL-YNHFDGE--------VPTKGVFNNKTRISLAGN 381 (409)
Q Consensus 342 p~~~~~l~~L~~L~L-~n~l~~~--------~p~~~~~~~L~~L~l~~N 381 (409)
|..+..+++|++|++ +|++.+. +|. ...+|+.|.+.++
T Consensus 391 ~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~--~~~~L~~L~~~~~ 437 (461)
T 1z7x_W 391 AATLLANHSLRELDLSNNCLGDAGILQLVESVRQ--PGCLLEQLVLYDI 437 (461)
T ss_dssp HHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS--TTCCCCEEECTTC
T ss_pred HHHHHhCCCccEEECCCCCCCHHHHHHHHHHhcc--CCcchhheeeccc
Confidence 889999999999999 8888754 333 3456777877776
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=7.2e-28 Score=239.23 Aligned_cols=173 Identities=16% Similarity=0.056 Sum_probs=128.5
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEe
Q 048551 91 LVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEAD 170 (409)
Q Consensus 91 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (409)
+++|++|+|++|.+++..|..|..+++|++|++++|.+++..| ++.+++|++|++++|.+++. | ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence 3478888888888887777778888888888888888876554 77888888888888888732 2 237788888
Q ss_pred CCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccc
Q 048551 171 SNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFT 249 (409)
Q Consensus 171 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~ 249 (409)
+++|.+++..+. .+++|++|++++|.+++..+ .+..+++|+.|++++|.+++..|..++..+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 888888765543 34678888888888887766 67777888888888888886666666546778888888888887
Q ss_pred cccchhhhcCCCCCEEEcccCcCccc
Q 048551 250 GPLPDSFSNASNRERLELSYNQFRGK 275 (409)
Q Consensus 250 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ 275 (409)
+..+ ...+++|+.|++++|++++.
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEE
T ss_pred cccc--cccCCCCCEEECCCCCCCCC
Confidence 5522 33577788888888877653
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=3.3e-26 Score=210.51 Aligned_cols=204 Identities=17% Similarity=0.146 Sum_probs=103.8
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
++++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555555555555555554444455555555555555555554444445555555555555
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCC-CCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCc----EEEeecCc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGK-IPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLE----MIYLHDNR 222 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~----~L~l~~n~ 222 (409)
+|.+++..+..+..+++|++|++++|.+.+. +|..+.++++|++|++++|.+++..+ .+..+.+|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 5555543333455555555555555555432 34455555555555555555555443 333333333 45555555
Q ss_pred CcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCcc
Q 048551 223 LNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRG 274 (409)
Q Consensus 223 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 274 (409)
++ .++...+ ...+|++|++++|++++..+..+..+++|+.|++++|++++
T Consensus 189 l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 189 MN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cc-ccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 55 3333333 23345555555555554433344555555555555555543
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=6.9e-27 Score=232.16 Aligned_cols=236 Identities=17% Similarity=0.117 Sum_probs=171.8
Q ss_pred cCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcE
Q 048551 113 SLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFY 192 (409)
Q Consensus 113 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 192 (409)
..+++|++|++++|.+++..|..|+.+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence 345589999999999998777889999999999999999986555 8999999999999999985432 389999
Q ss_pred EEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhh-cCCCCCEEEcccCc
Q 048551 193 LNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFS-NASNRERLELSYNQ 271 (409)
Q Consensus 193 L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~ 271 (409)
|++++|.+++.++ ..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++..|..+. .+++|+.|++++|.
T Consensus 104 L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 104 LHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp EECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred EECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 9999999998765 3468899999999999976676776 789999999999999988888876 79999999999999
Q ss_pred CccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCC
Q 048551 272 FRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFL 351 (409)
Q Consensus 272 l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 351 (409)
+++.+.... ++++ +.|++++|.++ .+|..+.. +++|+.|++++|++++ +|..+..+++|
T Consensus 181 l~~~~~~~~-l~~L-~~L~Ls~N~l~-------~~~~~~~~-----------l~~L~~L~Ls~N~l~~-lp~~l~~l~~L 239 (487)
T 3oja_A 181 IYDVKGQVV-FAKL-KTLDLSSNKLA-------FMGPEFQS-----------AAGVTWISLRNNKLVL-IEKALRFSQNL 239 (487)
T ss_dssp CCEEECCCC-CTTC-CEEECCSSCCC-------EECGGGGG-----------GTTCSEEECTTSCCCE-ECTTCCCCTTC
T ss_pred ccccccccc-CCCC-CEEECCCCCCC-------CCCHhHcC-----------CCCccEEEecCCcCcc-cchhhccCCCC
Confidence 987532111 2233 55566655555 33333322 2444555666665553 45555555556
Q ss_pred cEEEe-eccce-ecCCCC-CCCCCCCeeccc
Q 048551 352 VLLNL-YNHFD-GEVPTK-GVFNNKTRISLA 379 (409)
Q Consensus 352 ~~L~L-~n~l~-~~~p~~-~~~~~L~~L~l~ 379 (409)
+.|++ +|.+. +.+|.. ..++.++.+++.
T Consensus 240 ~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 66666 55554 333332 344455555554
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.1e-25 Score=205.09 Aligned_cols=174 Identities=18% Similarity=0.132 Sum_probs=120.8
Q ss_pred EEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeeccc
Q 048551 72 FINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIK 151 (409)
Q Consensus 72 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 151 (409)
.++..+.+++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4555666666 6776554 578999999999987666688888888888888888886666678888888888888888
Q ss_pred ccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccC-c-ccCCCCCCcEEEeecCcCcccCch
Q 048551 152 LTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMF-L-PVYNLSSLEMIYLHDNRLNGNLPP 229 (409)
Q Consensus 152 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~-~~~~l~~L~~L~l~~n~l~~~~p~ 229 (409)
+++..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+++.. + .+.++++|+.|++++|.+++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 88666677778888888888888877666556777777777777777776532 3 555566666666666666533333
Q ss_pred HHhhCCCccc----eeeccccccc
Q 048551 230 VIGAKLPNLR----KIVIALNNFT 249 (409)
Q Consensus 230 ~~~~~l~~L~----~L~L~~n~l~ 249 (409)
.+. .+++|+ +|++++|.++
T Consensus 168 ~~~-~l~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 168 DLR-VLHQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp GGH-HHHTCTTCCEEEECCSSCCC
T ss_pred Hhh-hhhhccccceeeecCCCccc
Confidence 332 333333 4444444444
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.1e-24 Score=201.89 Aligned_cols=199 Identities=22% Similarity=0.184 Sum_probs=178.7
Q ss_pred CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
.+++++++++++++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++ ++. .+.+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCTTCCEEEC
T ss_pred CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC-CCCCCcCCEEEC
Confidence 38999999999999 7777665 789999999999998888899999999999999999995 443 378999999999
Q ss_pred ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCccc
Q 048551 148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGN 226 (409)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~ 226 (409)
++|.++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|.+++.++ .+..+++|+.|++++|+++ .
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 162 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-E 162 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-C
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-c
Confidence 999998 788889999999999999999997777889999999999999999998877 6788999999999999999 7
Q ss_pred CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCcc
Q 048551 227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRG 274 (409)
Q Consensus 227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 274 (409)
+|...+..+++|++|++++|+++ .+|..+....+|+.+++++|++..
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 77766557999999999999999 678888888899999999999864
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.8e-24 Score=218.21 Aligned_cols=241 Identities=25% Similarity=0.274 Sum_probs=202.9
Q ss_pred CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
.++++|++++|+++ .+|. .+++|++|+|++|+++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEEC
Confidence 48999999999999 6776 5789999999999998 5665 7899999999999999 4665 5789999999
Q ss_pred ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccC
Q 048551 148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNL 227 (409)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~ 227 (409)
++|+++ .+|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+++++ ..+++|+.|++++|.++ .+
T Consensus 129 ~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~-~l 196 (622)
T 3g06_A 129 FGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLA-SL 196 (622)
T ss_dssp CSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CC
T ss_pred CCCCCC-cCCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCC-CC
Confidence 999998 46654 4899999999999984 454 3478999999999999865 45789999999999998 56
Q ss_pred chHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCC
Q 048551 228 PPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLP 307 (409)
Q Consensus 228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip 307 (409)
|. .+++|+.|++++|.++ .+|. .+++|+.|++++|++++.+ ..++++ +.|++++|.++ .+|
T Consensus 197 ~~----~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L-~~L~Ls~N~L~-------~lp 257 (622)
T 3g06_A 197 PT----LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP---VLPSEL-KELMVSGNRLT-------SLP 257 (622)
T ss_dssp CC----CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC---CCCTTC-CEEECCSSCCS-------CCC
T ss_pred CC----ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC---CCCCcC-cEEECCCCCCC-------cCC
Confidence 64 3578999999999998 4554 3578999999999999865 113344 99999999988 666
Q ss_pred hhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCC
Q 048551 308 TGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPT 366 (409)
Q Consensus 308 ~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~ 366 (409)
. .+++|+.|++++|+|+ .+|..+.++++|+.|++ +|.+.+.+|.
T Consensus 258 ~--------------~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 258 M--------------LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp C--------------CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred c--------------ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 5 1377899999999999 78999999999999999 9999887765
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.6e-25 Score=205.60 Aligned_cols=178 Identities=19% Similarity=0.217 Sum_probs=76.5
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcE
Q 048551 89 GNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLE 168 (409)
Q Consensus 89 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 168 (409)
..+++|+.|++++|.++. + ..+..+++|++|++++|.+++ + +.++.+++|++|++++|.+++..+..+.++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 334455555555555442 1 124445555555555555442 1 23444445555555555444333333444444444
Q ss_pred EeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccc
Q 048551 169 ADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNN 247 (409)
Q Consensus 169 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 247 (409)
|++++|.+++..+..+..+++|++|++++|.+++.++ .+..+++|+.|++++|.++ .++...+..+++|++|++++|.
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCc
Confidence 4444444444333334444444444444444444333 2334444444444444444 2222111133444444444444
Q ss_pred cccccchhhhcCCCCCEEEcccCc
Q 048551 248 FTGPLPDSFSNASNRERLELSYNQ 271 (409)
Q Consensus 248 l~~~~p~~l~~l~~L~~L~Ls~N~ 271 (409)
+++..+..+..+++|+.|++++|+
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHHHHhCCcCCCEEEccCCC
Confidence 443333333344444444444433
No 74
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=1.2e-24 Score=197.21 Aligned_cols=189 Identities=18% Similarity=0.185 Sum_probs=141.2
Q ss_pred CCCCceeeec-CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCccc
Q 048551 58 NLCEWTGVTC-ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEI 136 (409)
Q Consensus 58 ~~c~~~g~~c-~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 136 (409)
.|+.|.|.+| ...+++++++++++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.+++..+..+
T Consensus 3 ~Cp~~~gC~C~~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 79 (251)
T 3m19_A 3 TCETVTGCTCNEGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF 79 (251)
T ss_dssp -CHHHHSSEEEGGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cCCCCCceEcCCCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh
Confidence 4778999999 57889999999999 7887665 689999999999998888888899999999999999987777778
Q ss_pred CCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcE
Q 048551 137 GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEM 215 (409)
Q Consensus 137 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~ 215 (409)
..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++.++ .+..+++|+.
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence 888888888888888886666667778888888888888776555556777777777777777776655 4556666666
Q ss_pred EEeecCcCcccCchHHhhCCCccceeecccccccc
Q 048551 216 IYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTG 250 (409)
Q Consensus 216 L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 250 (409)
|++++|.+++..+..+. .+++|+.|++++|.++.
T Consensus 160 L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFD-RLGKLQTITLFGNQFDC 193 (251)
T ss_dssp EECCSSCCSCCCTTTTT-TCTTCCEEECCSCCBCT
T ss_pred EECCCCcCCccCHHHHh-CCCCCCEEEeeCCceeC
Confidence 66666666522222232 45555555555555543
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.92 E-value=1e-24 Score=203.98 Aligned_cols=180 Identities=12% Similarity=0.097 Sum_probs=111.5
Q ss_pred CCCEEEccCCcccccCCc---cccCCCCCcEEEcCCCcCCccCCccc--CCCCCCcEEEeecccccccCC----ccccCC
Q 048551 93 RLEKLILANNSFSGTIPT---NLSLRSKLMLFFANRNILAGEIPAEI--GNLFKLEKLSFCVIKLTGQLP----ASIQNL 163 (409)
Q Consensus 93 ~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~l~~l 163 (409)
.++.+.+.++.++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 467777777766532111 12234567788888887777777766 777778888888877775444 234467
Q ss_pred CCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc---Cc--ccCCCCCCcEEEeecCcCcccCchH---HhhCC
Q 048551 164 SSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGM---FL--PVYNLSSLEMIYLHDNRLNGNLPPV---IGAKL 235 (409)
Q Consensus 164 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~--~~~~l~~L~~L~l~~n~l~~~~p~~---~~~~l 235 (409)
++|++|++++|.+.+..+..++.+++|++|++++|.+.+. .. .+..+++|++|++++|.++ .++.. ++..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 7777777777777766667777777777777777776542 11 2345666666666666665 33321 22245
Q ss_pred CccceeeccccccccccchhhhcC---CCCCEEEcccCcCc
Q 048551 236 PNLRKIVIALNNFTGPLPDSFSNA---SNRERLELSYNQFR 273 (409)
Q Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~ 273 (409)
++|++|++++|.+++..|..+..+ ++|++|++++|+++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 666666666666665555555444 45566666555554
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=8e-24 Score=193.99 Aligned_cols=182 Identities=17% Similarity=0.164 Sum_probs=163.1
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
++++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 68999999999996666789999999999999999996666667899999999999999996666678999999999999
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccC
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNL 227 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~ 227 (409)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ .+.++++|+.|++++|.++ .+
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~ 196 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RV 196 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cC
Confidence 999997777789999999999999999997777778999999999999999999877 6889999999999999999 56
Q ss_pred chHHhhCCCccceeeccccccccc
Q 048551 228 PPVIGAKLPNLRKIVIALNNFTGP 251 (409)
Q Consensus 228 p~~~~~~l~~L~~L~L~~n~l~~~ 251 (409)
|...+..+++|+.|++++|.+...
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CHHHhccccCCCEEEecCCCeeCC
Confidence 665444899999999999998643
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=4.5e-24 Score=195.92 Aligned_cols=196 Identities=17% Similarity=0.163 Sum_probs=171.1
Q ss_pred CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
.+++.|++++|.++ .++ .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..++.+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 38999999999998 444 588999999999999999863 47889999999999999999777777899999999999
Q ss_pred ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCccc
Q 048551 148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGN 226 (409)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~ 226 (409)
++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++.++ .+..+++|+.|++++|.+++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc
Confidence 9999997777778999999999999999997777778999999999999999998877 678899999999999999955
Q ss_pred CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccc
Q 048551 227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGK 275 (409)
Q Consensus 227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 275 (409)
.+..+. .+++|+.|++++|.+.+. +++|+.++++.|+++|.
T Consensus 197 ~~~~~~-~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 197 PDGVFD-RLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGV 237 (272)
T ss_dssp CTTTTT-TCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGG
T ss_pred CHHHHh-CCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCc
Confidence 444455 899999999999988743 55788888888888863
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.3e-23 Score=192.86 Aligned_cols=179 Identities=22% Similarity=0.285 Sum_probs=155.8
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCc
Q 048551 88 LGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHL 167 (409)
Q Consensus 88 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 167 (409)
+.+++++++++++++.++ .+|..+. +.+++|++++|.+++..+..+..+++|++|++++|.+++. +.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCC
Confidence 677889999999999998 6676554 7899999999999977788899999999999999999854 332 7889999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccc
Q 048551 168 EADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALN 246 (409)
Q Consensus 168 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n 246 (409)
+|++++|.++ .+|..+..+++|++|++++|.+++.++ .+.++++|+.|++++|+++ .+|...+..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCC
Confidence 9999999998 778888999999999999999998877 7889999999999999998 566655448899999999999
Q ss_pred ccccccchhhhcCCCCCEEEcccCcCc
Q 048551 247 NFTGPLPDSFSNASNRERLELSYNQFR 273 (409)
Q Consensus 247 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 273 (409)
++++..+..+..+++|+.|++++|+++
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 999666667788999999999999986
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=3.9e-24 Score=192.42 Aligned_cols=187 Identities=16% Similarity=0.145 Sum_probs=159.4
Q ss_pred CccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCc-CCccCCcccCCCCCCcEEEeec-ccccccCC
Q 048551 80 VQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI-LAGEIPAEIGNLFKLEKLSFCV-IKLTGQLP 157 (409)
Q Consensus 80 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p 157 (409)
++ .+|. +. ++|++|++++|++++..+..|.++++|++|++++|+ +++..+..|..+++|++|++++ |.+++..+
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 44 5666 43 489999999999997777789999999999999997 8855556789999999999998 99986666
Q ss_pred ccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCc---EEEccCC-cCcccCc-ccCCCCCCc-EEEeecCcCcccCchHH
Q 048551 158 ASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLF---YLNVGGN-QFSGMFL-PVYNLSSLE-MIYLHDNRLNGNLPPVI 231 (409)
Q Consensus 158 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~-~~~~l~~L~-~L~l~~n~l~~~~p~~~ 231 (409)
..|.++++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+ .+.++++|+ .|++++|.++ .+|...
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~ 175 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA 175 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT
T ss_pred HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh
Confidence 788999999999999999985 665 88888888 9999999 8988877 688899999 9999999998 888777
Q ss_pred hhCCCccceeeccccc-cccccchhhhcC-CCCCEEEcccCcCcc
Q 048551 232 GAKLPNLRKIVIALNN-FTGPLPDSFSNA-SNRERLELSYNQFRG 274 (409)
Q Consensus 232 ~~~l~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~Ls~N~l~~ 274 (409)
+ ..++|++|++++|+ +++..+..|..+ ++|+.|++++|++++
T Consensus 176 ~-~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 176 F-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp T-TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred c-CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence 6 44899999999995 886667788888 999999999999874
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=7.8e-24 Score=190.45 Aligned_cols=197 Identities=14% Similarity=0.116 Sum_probs=169.9
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCc-ccccCCccccCCCCCcEEEcCC-CcCCccCCcccCCCCCCcEEE
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNS-FSGTIPTNLSLRSKLMLFFANR-NILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~ 146 (409)
++++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 69999999999997667789999999999999997 8866677899999999999998 999966667899999999999
Q ss_pred eecccccccCCccccCCCCCc---EEeCCCC-CCCCCCCCCCCCCCCCc-EEEccCCcCcccCcccCCCCCCcEEEeecC
Q 048551 147 FCVIKLTGQLPASIQNLSSHL---EADSNRN-NFGGKIPESPGQLRSLF-YLNVGGNQFSGMFLPVYNLSSLEMIYLHDN 221 (409)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n 221 (409)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ +|++++|.++..++.....++|+.|++++|
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCC
Confidence 99999995 776 88888888 9999999 99877777899999999 999999999977664344489999999999
Q ss_pred c-CcccCchHHhhCC-CccceeeccccccccccchhhhcCCCCCEEEcccCc
Q 048551 222 R-LNGNLPPVIGAKL-PNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQ 271 (409)
Q Consensus 222 ~-l~~~~p~~~~~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 271 (409)
+ ++ .+|...+..+ ++|++|++++|++++ +|.. .+++|+.|+++++.
T Consensus 190 ~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 190 KYLT-VIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTCC-EECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred CCcc-cCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence 5 88 6665544478 999999999999994 4543 67889999998763
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=2.8e-25 Score=210.05 Aligned_cols=209 Identities=13% Similarity=0.169 Sum_probs=151.6
Q ss_pred CCCCceeeecC--CCcEEEecCCCCccccCccccCC--CCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCcc-C
Q 048551 58 NLCEWTGVTCA--SLRFINIADNGVQGEIPNELGNL--VRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGE-I 132 (409)
Q Consensus 58 ~~c~~~g~~c~--~l~~L~L~~n~l~~~~p~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~ 132 (409)
-|..|.++.|+ .++.++++++.+. +..+..+ +++++|++++|.+++..+. +..+++|++|++++|.+++. +
T Consensus 35 vc~~W~~~~~~~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~ 110 (336)
T 2ast_B 35 VCKRWYRLASDESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTL 110 (336)
T ss_dssp SCHHHHHHHTCSTTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHH
T ss_pred HHHHHHHHhcCchhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHH
Confidence 34478777653 4789999998887 3456666 7899999999999866555 55788899999998888755 7
Q ss_pred CcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCC-CCCCC-CCCCCCCCCCCcEEEccCC-cCccc-Cc-cc
Q 048551 133 PAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRN-NFGGK-IPESPGQLRSLFYLNVGGN-QFSGM-FL-PV 207 (409)
Q Consensus 133 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~-~~ 207 (409)
|..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. .+ .+
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence 777888888888888888888777777888888888888888 56642 4444566777788888777 66653 22 45
Q ss_pred CCCC-CCcEEEeecC--cCc-ccCchHHhhCCCccceeeccccc-cccccchhhhcCCCCCEEEcccCc
Q 048551 208 YNLS-SLEMIYLHDN--RLN-GNLPPVIGAKLPNLRKIVIALNN-FTGPLPDSFSNASNRERLELSYNQ 271 (409)
Q Consensus 208 ~~l~-~L~~L~l~~n--~l~-~~~p~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~ 271 (409)
..++ +|++|++++| .++ +.++..+. .+++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus 191 ~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 191 AHVSETITQLNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHSCTTCCEEECCSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HhcccCCCEEEeCCCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 5667 7777777777 344 34455444 57777777777777 555566667777777777777764
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=1.7e-25 Score=213.98 Aligned_cols=261 Identities=13% Similarity=0.075 Sum_probs=179.3
Q ss_pred EEEecCCCCccccCccccCCCCCCEEEccCCcccccCC----ccccCCC-CCcEEEcCCCcCCccCCcccCCC-----CC
Q 048551 72 FINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIP----TNLSLRS-KLMLFFANRNILAGEIPAEIGNL-----FK 141 (409)
Q Consensus 72 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~~ 141 (409)
..+++.|++++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788899998888777777779999999999986655 6677888 89999999999987666666654 89
Q ss_pred CcEEEeecccccccCCcccc----CC-CCCcEEeCCCCCCCCCCCCC----CCC-CCCCcEEEccCCcCcccCc-----c
Q 048551 142 LEKLSFCVIKLTGQLPASIQ----NL-SSHLEADSNRNNFGGKIPES----PGQ-LRSLFYLNVGGNQFSGMFL-----P 206 (409)
Q Consensus 142 L~~L~L~~n~l~~~~p~~l~----~l-~~L~~L~l~~n~l~~~~~~~----~~~-l~~L~~L~l~~n~l~~~~~-----~ 206 (409)
|++|++++|.+++..+..+. .+ ++|++|++++|.+++..+.. +.. .++|++|++++|.+++... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999999866665443 44 78999999999987655433 333 3589999999998885432 3
Q ss_pred cCCCC-CCcEEEeecCcCcccCchHHh---hCC-Cccceeeccccccccc----cchhhhc-CCCCCEEEcccCcCcccc
Q 048551 207 VYNLS-SLEMIYLHDNRLNGNLPPVIG---AKL-PNLRKIVIALNNFTGP----LPDSFSN-ASNRERLELSYNQFRGKS 276 (409)
Q Consensus 207 ~~~l~-~L~~L~l~~n~l~~~~p~~~~---~~l-~~L~~L~L~~n~l~~~----~p~~l~~-l~~L~~L~Ls~N~l~~~~ 276 (409)
+...+ +|++|++++|.+++..+..+. ... ++|++|++++|.+++. ++..+.. .++|++|++++|++++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34454 899999999988865554333 134 5899999999988853 4455555 458999999999888755
Q ss_pred chhhh-----hcccCcEEecccCCccccccccccCChh-ccCCCCCCccccCCCCCCCEEECcCCccccccchh
Q 048551 277 IWRSA-----ATSYSQRLNDDDQNHHGRQQNICYLPTG-ISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRL 344 (409)
Q Consensus 277 ~~~~~-----l~~l~~~L~l~~n~l~~~~~~l~~ip~~-~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~ 344 (409)
...+. ..++ +.|++++|.+. .+... +..+..- +..+++|+.||+++|++.+..+..
T Consensus 242 ~~~l~~~~~~l~~L-~~L~L~~n~l~-------~i~~~~~~~l~~~----~~~l~~L~~LdL~~N~l~~~~~~~ 303 (362)
T 3goz_A 242 LENLKLLKDSLKHL-QTVYLDYDIVK-------NMSKEQCKALGAA----FPNIQKIILVDKNGKEIHPSHSIP 303 (362)
T ss_dssp HHHHHHTTTTTTTC-SEEEEEHHHHT-------TCCHHHHHHHHTT----STTCCEEEEECTTSCBCCGGGCHH
T ss_pred HHHHHHHHhcCCCc-cEEEeccCCcc-------ccCHHHHHHHHHH----hccCCceEEEecCCCcCCCcchHH
Confidence 32111 2334 66677666644 22211 1111000 233456677777777776554433
No 83
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=6.5e-25 Score=223.30 Aligned_cols=314 Identities=11% Similarity=-0.003 Sum_probs=179.7
Q ss_pred CcEEEecCCC-Ccc-ccCccccCCCCCCEEEccCCccccc----CCccccCCCCCcEEEcCCCcCC----ccCCcccCCC
Q 048551 70 LRFINIADNG-VQG-EIPNELGNLVRLEKLILANNSFSGT----IPTNLSLRSKLMLFFANRNILA----GEIPAEIGNL 139 (409)
Q Consensus 70 l~~L~L~~n~-l~~-~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~----~~~p~~~~~l 139 (409)
|++|++++|. ++. .++.....+++|++|+|++|.+++. ++..+..+++|++|++++|.++ +.++..+..+
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 8888888776 221 1223334678888888888877654 3334456788888888888776 2334445667
Q ss_pred CCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCC---CCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEE
Q 048551 140 FKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFG---GKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMI 216 (409)
Q Consensus 140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L 216 (409)
++|++|++++|.+.+ +|..+.++++|++|+++..... +..+..+..+++|+.|+++++.....+..+..+++|++|
T Consensus 220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence 888888888887773 5666777777777777643221 122233344444444444443222222233344444444
Q ss_pred EeecCcCcccCc------------------------hHHhhCCCccceeecc-----------ccccccc-cchhhhcCC
Q 048551 217 YLHDNRLNGNLP------------------------PVIGAKLPNLRKIVIA-----------LNNFTGP-LPDSFSNAS 260 (409)
Q Consensus 217 ~l~~n~l~~~~p------------------------~~~~~~l~~L~~L~L~-----------~n~l~~~-~p~~l~~l~ 260 (409)
++++|.+++... ..+...+++|++|+++ .|.+++. ++.....++
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence 444444332222 2222244555555555 2333322 111223455
Q ss_pred CCCEEEcccCcCccccchhhh--hcccCcEEecc----cCCccccccccccCChhccCCCCCCccccC------------
Q 048551 261 NRERLELSYNQFRGKSIWRSA--ATSYSQRLNDD----DQNHHGRQQNICYLPTGISNLVNLDSLATD------------ 322 (409)
Q Consensus 261 ~L~~L~Ls~N~l~~~~~~~~~--l~~l~~~L~l~----~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~------------ 322 (409)
+|++|+++.|.+++..+..+. .+++ +.|+++ .|.+++. +.-..++..+..+++|+.|++.
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L-~~L~l~~~~~~n~l~~~-p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNL-CDFRLVLLDREERITDL-PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSC-CEEEEEECSCCSCCSSC-CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCC-cEEEEeecCCCccccCc-hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 555555555555544322221 2233 566664 4444410 0000123335668888888852
Q ss_pred ----CCCCCCEEECcCCccccc-cchhhhcCCCCcEEEe-eccceec-CCCC-CCCCCCCeecccCCCCceec
Q 048551 323 ----SLKSIEELDLSSNNLSGQ-LPRLLVNLSFLVLLNL-YNHFDGE-VPTK-GVFNNKTRISLAGNGKLCGG 387 (409)
Q Consensus 323 ----~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L-~n~l~~~-~p~~-~~~~~L~~L~l~~Np~l~g~ 387 (409)
.+++|++|++++|++++. ++..+..+++|++|++ +|.+++. ++.. ..+++|+.|++++|+ +++.
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 378899999999999863 4556678999999999 8887644 2322 468999999999995 6643
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=7.4e-23 Score=191.21 Aligned_cols=194 Identities=23% Similarity=0.329 Sum_probs=168.1
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
+.++++|++++|+++ .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 348999999999998 566 68899999999999999995444 8999999999999999985 44 688999999999
Q ss_pred eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCccc
Q 048551 147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGN 226 (409)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 226 (409)
+++|.+++ ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.++ .
T Consensus 114 l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~ 187 (308)
T 1h6u_A 114 LTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS-D 187 (308)
T ss_dssp CTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-C
T ss_pred CCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccC-c
Confidence 99999985 44 38999999999999999986543 8889999999999999988655 889999999999999998 5
Q ss_pred CchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCcccc
Q 048551 227 LPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKS 276 (409)
Q Consensus 227 ~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 276 (409)
++. +. .+++|++|++++|++++..+ +..+++|+.|++++|++++.+
T Consensus 188 ~~~-l~-~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 188 ISP-LA-SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CGG-GG-GCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred Chh-hc-CCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence 554 44 79999999999999996553 889999999999999998654
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.8e-25 Score=214.35 Aligned_cols=263 Identities=16% Similarity=0.154 Sum_probs=165.1
Q ss_pred ccCccccCCCCCCEEEccCCcccccC----CccccCCCCCcEEEcCCC---cCCccCCccc-------CCCCCCcEEEee
Q 048551 83 EIPNELGNLVRLEKLILANNSFSGTI----PTNLSLRSKLMLFFANRN---ILAGEIPAEI-------GNLFKLEKLSFC 148 (409)
Q Consensus 83 ~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n---~l~~~~p~~~-------~~l~~L~~L~L~ 148 (409)
.++..+..+++|++|+|++|.+++.. +..+..+++|++|++++| ++++.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 45566777777888888888777553 334667778888888775 3444455444 567778888888
Q ss_pred cccccc----cCCccccCCCCCcEEeCCCCCCCCCCCCCCC----CC---------CCCcEEEccCCcCcc-cCc----c
Q 048551 149 VIKLTG----QLPASIQNLSSHLEADSNRNNFGGKIPESPG----QL---------RSLFYLNVGGNQFSG-MFL----P 206 (409)
Q Consensus 149 ~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~L~l~~n~l~~-~~~----~ 206 (409)
+|.+++ .+|..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|.++. ..+ .
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 887775 3566677777888888888777533222222 22 677888888887752 122 3
Q ss_pred cCCCCCCcEEEeecCcCcc-----cCchHHhhCCCccceeeccccccc----cccchhhhcCCCCCEEEcccCcCccccc
Q 048551 207 VYNLSSLEMIYLHDNRLNG-----NLPPVIGAKLPNLRKIVIALNNFT----GPLPDSFSNASNRERLELSYNQFRGKSI 277 (409)
Q Consensus 207 ~~~l~~L~~L~l~~n~l~~-----~~p~~~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~N~l~~~~~ 277 (409)
+..+++|+.|++++|.++. .++..+. .+++|++|++++|.++ +.+|..+..+++|++|++++|++++...
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~-~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGG-GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhh-cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 4566778888888887762 1222444 6777888888888775 4566777777888888888887765321
Q ss_pred hhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCcccc----ccchhh-hcCCCCc
Q 048551 278 WRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSG----QLPRLL-VNLSFLV 352 (409)
Q Consensus 278 ~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~ 352 (409)
. .++..+. ...+++|++|+|++|++++ .+|..+ .++++|+
T Consensus 262 ~--------------------------~l~~~l~---------~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 262 A--------------------------AVVDAFS---------KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp H--------------------------HHHHHHH---------TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred H--------------------------HHHHHHh---------hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 1 1222221 1124666777777777775 366665 5567777
Q ss_pred EEEe-eccceecCC--CC--CCCCCCCeecccCC
Q 048551 353 LLNL-YNHFDGEVP--TK--GVFNNKTRISLAGN 381 (409)
Q Consensus 353 ~L~L-~n~l~~~~p--~~--~~~~~L~~L~l~~N 381 (409)
+|++ +|.+.+..+ .. ..+++++.+++..+
T Consensus 307 ~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 307 FLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp EEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred EEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 7777 677665543 11 23444444444443
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=197.09 Aligned_cols=223 Identities=14% Similarity=0.116 Sum_probs=156.4
Q ss_pred CCcEEEecCCCCcccc-Cc--cccCCCCCCEEEccCCcccccCCccc--cCCCCCcEEEcCCCcCCccCC----cccCCC
Q 048551 69 SLRFINIADNGVQGEI-PN--ELGNLVRLEKLILANNSFSGTIPTNL--SLRSKLMLFFANRNILAGEIP----AEIGNL 139 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~-p~--~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~l 139 (409)
.++.+.+.++.++... .. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 5677777777765321 10 12234568888888888887777777 778888888888888876544 234567
Q ss_pred CCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCC--C--CCCCCCCCCCcEEEccCCcCcccCc----ccCCCC
Q 048551 140 FKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGK--I--PESPGQLRSLFYLNVGGNQFSGMFL----PVYNLS 211 (409)
Q Consensus 140 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~l~ 211 (409)
++|++|++++|.+++..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|.++.... .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 7888888888888776677788888888888888887642 1 2334677888888888888864433 135678
Q ss_pred CCcEEEeecCcCcccCchHHhhCC---CccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcE
Q 048551 212 SLEMIYLHDNRLNGNLPPVIGAKL---PNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQR 288 (409)
Q Consensus 212 ~L~~L~l~~n~l~~~~p~~~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~ 288 (409)
+|++|++++|.+++..|..++ .+ ++|++|++++|+++ .+|..+. ++|++|++++|++++.+.. ..++++ +.
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~-~~l~~L-~~ 298 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQP-DELPEV-DN 298 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCT-TSCCCC-SC
T ss_pred CCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchh-hhCCCc-cE
Confidence 888888888888866566655 44 58888888888888 5566553 6888888888888875431 113444 78
Q ss_pred EecccCCcc
Q 048551 289 LNDDDQNHH 297 (409)
Q Consensus 289 L~l~~n~l~ 297 (409)
|++++|.++
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 888888776
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2.8e-24 Score=205.57 Aligned_cols=253 Identities=17% Similarity=0.115 Sum_probs=181.5
Q ss_pred EEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCC----cccCCCC-CCcEEEeecccccccCCccccCC-----CC
Q 048551 96 KLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIP----AEIGNLF-KLEKLSFCVIKLTGQLPASIQNL-----SS 165 (409)
Q Consensus 96 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~ 165 (409)
.+++++|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46889999998888877777789999999999996655 6678888 89999999999997777777765 89
Q ss_pred CcEEeCCCCCCCCCCCCCC----CCC-CCCcEEEccCCcCcccCc-c----cCC-CCCCcEEEeecCcCcccCc----hH
Q 048551 166 HLEADSNRNNFGGKIPESP----GQL-RSLFYLNVGGNQFSGMFL-P----VYN-LSSLEMIYLHDNRLNGNLP----PV 230 (409)
Q Consensus 166 L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~-~----~~~-l~~L~~L~l~~n~l~~~~p----~~ 230 (409)
|++|++++|.+++..+..+ ..+ ++|++|++++|.+++... . +.. .++|++|++++|.+++..+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999987665533 344 799999999999987665 3 333 3699999999999985433 33
Q ss_pred HhhCCC-ccceeeccccccccccchhh----hcC-CCCCEEEcccCcCccccchhhh-----hc-ccCcEEecccCCccc
Q 048551 231 IGAKLP-NLRKIVIALNNFTGPLPDSF----SNA-SNRERLELSYNQFRGKSIWRSA-----AT-SYSQRLNDDDQNHHG 298 (409)
Q Consensus 231 ~~~~l~-~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~~~~~~~~-----l~-~l~~~L~l~~n~l~~ 298 (409)
+. ..+ +|++|++++|++++..+..+ ..+ ++|++|++++|++++.....+. .. ++ +.|++++|.++
T Consensus 162 l~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L-~~L~Ls~N~l~- 238 (362)
T 3goz_A 162 LA-AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV-VSLNLCLNCLH- 238 (362)
T ss_dssp HH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC-CEEECCSSCCC-
T ss_pred Hh-cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc-eEEECcCCCCC-
Confidence 44 444 89999999999987766544 445 5999999999999875422111 12 34 77777777776
Q ss_pred cccccccCChhccCCCCCCccccCCCCCCCEEECcCCcccccc-------chhhhcCCCCcEEEe-eccceec
Q 048551 299 RQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQL-------PRLLVNLSFLVLLNL-YNHFDGE 363 (409)
Q Consensus 299 ~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~-------p~~~~~l~~L~~L~L-~n~l~~~ 363 (409)
..-+..+..+ +..+++|++|++++|++.+.. +..+..+++|++||+ +|++.+.
T Consensus 239 -----~~~~~~l~~~-------~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 239 -----GPSLENLKLL-------KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp -----CCCHHHHHHT-------TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred -----cHHHHHHHHH-------HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 1111122111 334566777777777744322 224455666777777 6666544
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=8.7e-25 Score=210.87 Aligned_cols=253 Identities=21% Similarity=0.213 Sum_probs=195.7
Q ss_pred cCCCcEEEecCCCCccc----cCccccCCCCCCEEEccCC---cccccCCccc-------cCCCCCcEEEcCCCcCCc--
Q 048551 67 CASLRFINIADNGVQGE----IPNELGNLVRLEKLILANN---SFSGTIPTNL-------SLRSKLMLFFANRNILAG-- 130 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n---~l~~~~~~~~-------~~l~~L~~L~l~~n~l~~-- 130 (409)
|.++++|++++|.+++. ++..+..+++|++|+|++| .+++.+|..+ ..+++|++|++++|.+++
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 44899999999999866 3445778999999999996 4555566555 689999999999999996
Q ss_pred --cCCcccCCCCCCcEEEeecccccccCCccc----cCC---------CCCcEEeCCCCCCC-CCCC---CCCCCCCCCc
Q 048551 131 --EIPAEIGNLFKLEKLSFCVIKLTGQLPASI----QNL---------SSHLEADSNRNNFG-GKIP---ESPGQLRSLF 191 (409)
Q Consensus 131 --~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l---------~~L~~L~l~~n~l~-~~~~---~~~~~l~~L~ 191 (409)
.+|..+..+++|++|++++|.++...+..+ ..+ ++|++|++++|.++ +.++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 467788899999999999999975444433 344 89999999999997 3344 3566788999
Q ss_pred EEEccCCcCcc-----cCc-ccCCCCCCcEEEeecCcCc----ccCchHHhhCCCccceeeccccccccc----cchhhh
Q 048551 192 YLNVGGNQFSG-----MFL-PVYNLSSLEMIYLHDNRLN----GNLPPVIGAKLPNLRKIVIALNNFTGP----LPDSFS 257 (409)
Q Consensus 192 ~L~l~~n~l~~-----~~~-~~~~l~~L~~L~l~~n~l~----~~~p~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~ 257 (409)
+|++++|.++. ..+ .+..+++|+.|++++|.++ +.+|..+. .+++|++|++++|.+++. ++..+.
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 99999999983 344 6788999999999999996 56787776 899999999999999865 556664
Q ss_pred c--CCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCC
Q 048551 258 N--ASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSN 335 (409)
Q Consensus 258 ~--l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N 335 (409)
. +++|++|++++|++++... ..+|..+ +.++++|++|++++|
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~--------------------------~~l~~~l----------~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAV--------------------------RTLKTVI----------DEKMPDLLFLELNGN 313 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHH--------------------------HHHHHHH----------HHHCTTCCEEECTTS
T ss_pred hccCCCeEEEECcCCcCCHHHH--------------------------HHHHHHH----------HhcCCCceEEEccCC
Confidence 3 8999999999999985211 1244433 123477899999999
Q ss_pred ccccccc--hhh-hcCCCCcEEEe
Q 048551 336 NLSGQLP--RLL-VNLSFLVLLNL 356 (409)
Q Consensus 336 ~l~~~~p--~~~-~~l~~L~~L~L 356 (409)
++++..+ ..+ ..++.++..++
T Consensus 314 ~l~~~~~~~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 314 RFSEEDDVVDEIREVFSTRGRGEL 337 (386)
T ss_dssp BSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred cCCcchhHHHHHHHHhhhcCcchh
Confidence 9997764 332 23455555555
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2.7e-22 Score=181.72 Aligned_cols=179 Identities=20% Similarity=0.209 Sum_probs=161.1
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeC
Q 048551 92 VRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADS 171 (409)
Q Consensus 92 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 171 (409)
...++++++++.++ .+|..+. +.++.|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35789999999999 6776664 68999999999999877888999999999999999999888888999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCch-HHhhCCCccceeeccccccc
Q 048551 172 NRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPP-VIGAKLPNLRKIVIALNNFT 249 (409)
Q Consensus 172 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~l~~L~~L~L~~n~l~ 249 (409)
++|.+++..+..|..+++|++|++++|.+++.++ .+..+++|+.|++++|.++ .+|. .+. .+++|++|++++|+++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~-~l~~L~~L~L~~N~l~ 168 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFD-KLTNLQTLSLSTNQLQ 168 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT-TCTTCCEEECCSSCCS
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcC-cCcCCCEEECCCCcCC
Confidence 9999998777888999999999999999998877 6788999999999999999 5555 455 8999999999999999
Q ss_pred cccchhhhcCCCCCEEEcccCcCccc
Q 048551 250 GPLPDSFSNASNRERLELSYNQFRGK 275 (409)
Q Consensus 250 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ 275 (409)
+..+..+..+++|+.|++++|+++..
T Consensus 169 ~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 169 SVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 87777899999999999999999875
No 90
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.89 E-value=3.2e-22 Score=175.96 Aligned_cols=186 Identities=21% Similarity=0.219 Sum_probs=157.5
Q ss_pred CCCCCceeeecCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCccc
Q 048551 57 VNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEI 136 (409)
Q Consensus 57 ~~~c~~~g~~c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 136 (409)
...|.|.++.|. +++++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|
T Consensus 4 ~C~C~~~~v~c~--------~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 72 (208)
T 2o6s_A 4 RCSCSGTTVECY--------SQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF 72 (208)
T ss_dssp TCEEETTEEECC--------SSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCEECCCEEEec--------CCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhc
Confidence 345778777664 56666 566554 4689999999999997777778999999999999999996555668
Q ss_pred CCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcE
Q 048551 137 GNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEM 215 (409)
Q Consensus 137 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~ 215 (409)
..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+ .+..+++|+.
T Consensus 73 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 73 NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 899999999999999996666668899999999999999997777778999999999999999998777 5788999999
Q ss_pred EEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCC
Q 048551 216 IYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASN 261 (409)
Q Consensus 216 L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 261 (409)
|++++|.+.+ .+++|+.|+++.|+++|.+|..++.++.
T Consensus 153 L~l~~N~~~~--------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 153 IWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp EECCSCCBCC--------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred EEecCCCeec--------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 9999998773 4578999999999999999998887654
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=2.7e-22 Score=187.34 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=137.4
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCc
Q 048551 88 LGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHL 167 (409)
Q Consensus 88 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 167 (409)
...+++|++|++++|.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++ .+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCC
Confidence 4567889999999999884 45 58889999999999999984 444 8889999999999999884 33 688888999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccc
Q 048551 168 EADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNN 247 (409)
Q Consensus 168 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~ 247 (409)
+|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.++ .++. +. .+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS-DLTP-LA-NLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCC-CChh-hc-CCCCCCEEECCCCc
Confidence 999999988853 3 27888888888888888877654 777888888888888887 4554 44 78888888888888
Q ss_pred cccccchhhhcCCCCCEEEcccCcCcc
Q 048551 248 FTGPLPDSFSNASNRERLELSYNQFRG 274 (409)
Q Consensus 248 l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 274 (409)
+++..+ +..+++|++|++++|++++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred cCcChh--hcCCCCCCEEEccCCccCc
Confidence 875433 7778888888888888764
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=5.1e-22 Score=188.90 Aligned_cols=239 Identities=17% Similarity=0.111 Sum_probs=182.2
Q ss_pred cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCC-cccCCCCCCcE-EEee
Q 048551 71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIP-AEIGNLFKLEK-LSFC 148 (409)
Q Consensus 71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~-L~L~ 148 (409)
++++.++++++ .+|..+. +++++|+|++|+|+...+..|.++++|++|++++|++.+.+| ..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666788888 7887663 689999999999996555679999999999999999876666 45788888775 5667
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccC-CcCcccCc-ccCCCC-CCcEEEeecCcCcc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGG-NQFSGMFL-PVYNLS-SLEMIYLHDNRLNG 225 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~-~~~~l~-~L~~L~l~~n~l~~ 225 (409)
+|+++...|..|..+++|++|++++|.+.+..+..+....++..+++.+ +.+....+ .+..+. .++.|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 7899977788899999999999999999877666777778888999866 56776665 566654 6889999999998
Q ss_pred cCchHHhhCCCccceeeccc-cccccccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCccccccccc
Q 048551 226 NLPPVIGAKLPNLRKIVIAL-NNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNIC 304 (409)
Q Consensus 226 ~~p~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~ 304 (409)
.+|...+ ...+|+++++.+ |.++...+..|.++++|++|++++|+++..+...+. .+ +.|...++.-- +
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~--~L-~~L~~l~~~~l------~ 237 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE--NL-KKLRARSTYNL------K 237 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT--TC-CEEECTTCTTC------C
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc--cc-hHhhhccCCCc------C
Confidence 7888777 678899999975 667644445789999999999999999876543322 22 44444433211 2
Q ss_pred cCChhccCCCCCCccccCCCCCCCEEECcCC
Q 048551 305 YLPTGISNLVNLDSLATDSLKSIEELDLSSN 335 (409)
Q Consensus 305 ~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N 335 (409)
.+|. +.++++|+.++++++
T Consensus 238 ~lP~------------l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 238 KLPT------------LEKLVALMEASLTYP 256 (350)
T ss_dssp CCCC------------TTTCCSCCEEECSCH
T ss_pred cCCC------------chhCcChhhCcCCCC
Confidence 4442 334577788888764
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=5.2e-24 Score=216.62 Aligned_cols=315 Identities=14% Similarity=0.069 Sum_probs=212.5
Q ss_pred ecCCCcEEEecCCCCccccCccccC-CC-CCCEEEccCCc-ccc-cCCccccCCCCCcEEEcCCCcCCcc----CCcccC
Q 048551 66 TCASLRFINIADNGVQGEIPNELGN-LV-RLEKLILANNS-FSG-TIPTNLSLRSKLMLFFANRNILAGE----IPAEIG 137 (409)
Q Consensus 66 ~c~~l~~L~L~~n~l~~~~p~~~~~-l~-~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~~ 137 (409)
.|.++++|+|++|.+++..+..+.. ++ +|++|++++|. ++. .++.....+++|++|++++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5779999999999998776666665 34 49999999986 321 1233345789999999999998765 333456
Q ss_pred CCCCCcEEEeeccccc----ccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCc---ccC-cccCC
Q 048551 138 NLFKLEKLSFCVIKLT----GQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFS---GMF-LPVYN 209 (409)
Q Consensus 138 ~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~-~~~~~ 209 (409)
.+++|++|++++|.++ +.++..+.++++|++|++++|.+.+ ++..+..+++|++|+++..... ... ..+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 7899999999999997 3445556788999999999999885 5677888999999999864332 111 26778
Q ss_pred CCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccc-hhhhcCCCCCEEEcccCcCccccchhhh--hcccC
Q 048551 210 LSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLP-DSFSNASNRERLELSYNQFRGKSIWRSA--ATSYS 286 (409)
Q Consensus 210 l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~--l~~l~ 286 (409)
+++|+.++++++... .+|..+. .+++|++|++++|.+++... ..+..+++|++|+++ +.+.+..+.... .+++
T Consensus 269 ~~~L~~L~l~~~~~~-~l~~~~~-~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L- 344 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN-EMPILFP-FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQL- 344 (592)
T ss_dssp CTTCCEEEETTCCTT-TGGGGGG-GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTC-
T ss_pred cccccccCccccchh-HHHHHHh-hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCC-
Confidence 899999999986544 6776665 78999999999999775433 345778888888887 444433322221 3344
Q ss_pred cEEecc-----------cCCccc--------ccccc-----------ccCChhccC-CCCCCccccC-------------
Q 048551 287 QRLNDD-----------DQNHHG--------RQQNI-----------CYLPTGISN-LVNLDSLATD------------- 322 (409)
Q Consensus 287 ~~L~l~-----------~n~l~~--------~~~~l-----------~~ip~~~~~-l~~L~~L~~~------------- 322 (409)
+.|+++ .|.+++ .+++| +..+..+.. +++|+.|++.
T Consensus 345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 677777 244442 01111 111112222 4455555432
Q ss_pred ---------CCCCCCEEECcCC--ccccccchhhhc-CCCCcEEEe-eccceec-CCCC-CCCCCCCeecccCCCCcee
Q 048551 323 ---------SLKSIEELDLSSN--NLSGQLPRLLVN-LSFLVLLNL-YNHFDGE-VPTK-GVFNNKTRISLAGNGKLCG 386 (409)
Q Consensus 323 ---------~l~~L~~L~Ls~N--~l~~~~p~~~~~-l~~L~~L~L-~n~l~~~-~p~~-~~~~~L~~L~l~~Np~l~g 386 (409)
++++|++|++++| .+++..+..+.. +++|++|++ +|++++. ++.. ..+++|++|++++|+ +++
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~ 502 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSE 502 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBH
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcH
Confidence 2566777777543 355544444433 777888888 7776652 2322 467889999999986 553
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.8e-23 Score=197.66 Aligned_cols=247 Identities=13% Similarity=0.144 Sum_probs=188.3
Q ss_pred CCCCEEEccCCcccccCCccccCC--CCCcEEEcCCCcCCccCCcccCCCCCCcEEEeeccccccc-CCccccCCCCCcE
Q 048551 92 VRLEKLILANNSFSGTIPTNLSLR--SKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQ-LPASIQNLSSHLE 168 (409)
Q Consensus 92 ~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~ 168 (409)
..++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34889999999887 3456666 8999999999999966554 56789999999999998865 7788899999999
Q ss_pred EeCCCCCCCCCCCCCCCCCCCCcEEEccCC-cCccc-Cc-ccCCCCCCcEEEeecC-cCccc-CchHHhhCCC-ccceee
Q 048551 169 ADSNRNNFGGKIPESPGQLRSLFYLNVGGN-QFSGM-FL-PVYNLSSLEMIYLHDN-RLNGN-LPPVIGAKLP-NLRKIV 242 (409)
Q Consensus 169 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~-~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~~l~-~L~~L~ 242 (409)
|++++|.+++..+..++.+++|++|++++| .+++. .+ .+.++++|++|++++| .+++. ++..+. .++ +|++|+
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~ 201 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLN 201 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEE
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEE
Confidence 999999998777778888999999999999 67752 33 5778899999999999 88854 555565 788 999999
Q ss_pred cccc--ccc-cccchhhhcCCCCCEEEcccCc-CccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCc
Q 048551 243 IALN--NFT-GPLPDSFSNASNRERLELSYNQ-FRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDS 318 (409)
Q Consensus 243 L~~n--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~ 318 (409)
+++| .++ +.+|..+..+++|++|++++|. +++. .+..+.
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------------------------~~~~l~------- 244 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND------------------------------CFQEFF------- 244 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG------------------------------GGGGGG-------
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH------------------------------HHHHHh-------
Confidence 9999 455 4567778889999999999998 5532 222222
Q ss_pred cccCCCCCCCEEECcCCc-cccccchhhhcCCCCcEEEe-eccceecCCCC--CCC-CCCCeecccCCCCceecCCC
Q 048551 319 LATDSLKSIEELDLSSNN-LSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK--GVF-NNKTRISLAGNGKLCGGFDG 390 (409)
Q Consensus 319 L~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~--~~~-~~L~~L~l~~Np~l~g~~p~ 390 (409)
.+++|++|++++|. ++......+.++++|++|++ +| ++.. ..+ ..+..|++++| .++|..|.
T Consensus 245 ----~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n-~l~~~~~~ 311 (336)
T 2ast_B 245 ----QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCS-HFTTIARP 311 (336)
T ss_dssp ----GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCC-CSCCTTCS
T ss_pred ----CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecc-cCccccCC
Confidence 34677888888884 33322335777888888888 55 3332 222 34666777777 78877775
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=4.6e-22 Score=199.70 Aligned_cols=197 Identities=20% Similarity=0.227 Sum_probs=167.1
Q ss_pred CCCCCCCCC-----Cceee-ecC--CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEc
Q 048551 52 SLTNSVNLC-----EWTGV-TCA--SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFA 123 (409)
Q Consensus 52 ~w~~~~~~c-----~~~g~-~c~--~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 123 (409)
+|..+..+| .|.++ .|. +++.|++++|++++ +|..+. ++|++|+|++|.|+ .+| ..+++|++|++
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~L 107 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDA 107 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEEC
T ss_pred HHhccCCccccccchhhhccccccCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEc
Confidence 454455667 68888 554 89999999999995 787663 89999999999999 677 45799999999
Q ss_pred CCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 048551 124 NRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGM 203 (409)
Q Consensus 124 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 203 (409)
++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.++++
T Consensus 108 s~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~l 175 (571)
T 3cvr_A 108 CDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFL 175 (571)
T ss_dssp CSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC
T ss_pred cCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCc
Confidence 9999996 777 665 99999999999995 676 68999999999999995 665 578999999999999996
Q ss_pred CcccCCCCCCcEEEeecCcCcccCchHHhhCCCcc-------ceeeccccccccccchhhhcCCCCCEEEcccCcCcccc
Q 048551 204 FLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNL-------RKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKS 276 (409)
Q Consensus 204 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L-------~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 276 (409)
+. +. ++|+.|++++|.++ .+|. +. . +| +.|++++|.++ .+|..+..+++|+.|++++|++++..
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~-~lp~-~~-~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLE-SLPA-VP-V--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred ch-hh--CCCCEEECcCCCCC-chhh-HH-H--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 55 54 89999999999999 8887 54 2 67 99999999999 67888888999999999999998755
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=1.6e-21 Score=185.42 Aligned_cols=241 Identities=17% Similarity=0.140 Sum_probs=168.9
Q ss_pred CEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCC-ccccCCCCCcE-EeCC
Q 048551 95 EKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLP-ASIQNLSSHLE-ADSN 172 (409)
Q Consensus 95 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~-L~l~ 172 (409)
++++.++++++ .+|..+ .+++++|++++|+|+...+..|.++++|++|+|++|++.+.+| ..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 67888899998 678766 3688999999999984444568999999999999999866555 45778888765 5566
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeec-CcCcccCchHHhhCC-Cccceeeccccccc
Q 048551 173 RNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHD-NRLNGNLPPVIGAKL-PNLRKIVIALNNFT 249 (409)
Q Consensus 173 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~-n~l~~~~p~~~~~~l-~~L~~L~L~~n~l~ 249 (409)
.|++.+..|..|.++++|++|++++|.+....+ .+....++..+++.+ +.+. .++...+..+ ..++.|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccccc
Confidence 788887778888899999999999999888766 566667788888876 4555 5555433244 35778888888887
Q ss_pred cccchhhhcCCCCCEEEccc-CcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCCCCC
Q 048551 250 GPLPDSFSNASNRERLELSY-NQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIE 328 (409)
Q Consensus 250 ~~~p~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~ 328 (409)
. +|.......+|+++++++ |.++ .+|... |.++++|+
T Consensus 168 ~-i~~~~f~~~~L~~l~l~~~n~l~-------------------------------~i~~~~----------f~~l~~L~ 205 (350)
T 4ay9_X 168 E-IHNSAFNGTQLDELNLSDNNNLE-------------------------------ELPNDV----------FHGASGPV 205 (350)
T ss_dssp E-ECTTSSTTEEEEEEECTTCTTCC-------------------------------CCCTTT----------TTTEECCS
T ss_pred C-CChhhccccchhHHhhccCCccc-------------------------------CCCHHH----------hccCcccc
Confidence 4 444444456677777764 4444 455432 34456677
Q ss_pred EEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCCCCCCCCCeecccCCCCce
Q 048551 329 ELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTKGVFNNKTRISLAGNGKLC 385 (409)
Q Consensus 329 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~~~~~~L~~L~l~~Np~l~ 385 (409)
+||+++|+|+. +|.. .+.+|+.|.+ +++-...+|....+++|+.+++.++ ..|
T Consensus 206 ~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~-~~c 259 (350)
T 4ay9_X 206 ILDISRTRIHS-LPSY--GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP-SHC 259 (350)
T ss_dssp EEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH-HHH
T ss_pred hhhcCCCCcCc-cChh--hhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC-ccc
Confidence 78888887773 4432 2455666666 5555556666566777777777543 444
No 97
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=3.6e-23 Score=210.49 Aligned_cols=315 Identities=12% Similarity=0.044 Sum_probs=192.9
Q ss_pred ecCCCcEEEecCCCCccccCcccc-CCCCCCEEEccCC-ccccc-CCccccCCCCCcEEEcCCCcCCccCCccc----CC
Q 048551 66 TCASLRFINIADNGVQGEIPNELG-NLVRLEKLILANN-SFSGT-IPTNLSLRSKLMLFFANRNILAGEIPAEI----GN 138 (409)
Q Consensus 66 ~c~~l~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~----~~ 138 (409)
.|.++++|++++|.+++..+..+. .+++|++|++++| .+++. ++..+..+++|++|++++|.+++..+..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 466899999999988876666665 5788999999888 55432 34444578888888888888765443333 35
Q ss_pred CCCCcEEEeeccc--ccc-cCCccccCCCCCcEEeCCCCCCCCCCCCCCC------------------------------
Q 048551 139 LFKLEKLSFCVIK--LTG-QLPASIQNLSSHLEADSNRNNFGGKIPESPG------------------------------ 185 (409)
Q Consensus 139 l~~L~~L~L~~n~--l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~------------------------------ 185 (409)
+++|++|++++|. +.. .++..+.++++|++|++++|...+.++..+.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 6788888888776 221 1112223457777777776621001111111
Q ss_pred ------------------------CCCCCcEEEccCCcCcccCc--ccCCCCCCcEEEeecCcCcccCchHHhhCCCccc
Q 048551 186 ------------------------QLRSLFYLNVGGNQFSGMFL--PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLR 239 (409)
Q Consensus 186 ------------------------~l~~L~~L~l~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~ 239 (409)
.+++|++|++++|.+++... .+..+++|+.|++++| ++......+...+++|+
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 34566666666666543222 2445666777777666 33222223332466677
Q ss_pred eeecc---------ccccccccchhh-hcCCCCCEEEcccCcCccccchhhh--hcccCcEEecc--c----CCcccccc
Q 048551 240 KIVIA---------LNNFTGPLPDSF-SNASNRERLELSYNQFRGKSIWRSA--ATSYSQRLNDD--D----QNHHGRQQ 301 (409)
Q Consensus 240 ~L~L~---------~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~~~~~~--l~~l~~~L~l~--~----n~l~~~~~ 301 (409)
+|++. .+.+++.....+ ..+++|+.|.++.|.+++.....+. .+++ +.|+++ + +.+++ .+
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L-~~L~L~~~~~~~~~~l~~-~~ 419 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNM-TRFRLCIIEPKAPDYLTL-EP 419 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTC-CEEEEEESSTTCCCTTTC-CC
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCc-ceeEeecccCCCcccccC-Cc
Confidence 77662 234443322233 2467777777777777655433322 3444 778887 3 33330 00
Q ss_pred ccccCChhccCCCCCCccccCC-------------CCCCCEEECcCCccccccchhh-hcCCCCcEEEe-eccceecCCC
Q 048551 302 NICYLPTGISNLVNLDSLATDS-------------LKSIEELDLSSNNLSGQLPRLL-VNLSFLVLLNL-YNHFDGEVPT 366 (409)
Q Consensus 302 ~l~~ip~~~~~l~~L~~L~~~~-------------l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L-~n~l~~~~p~ 366 (409)
.-..++..+..+++|+.|++++ +++|+.|++++|.+++..+..+ ..+++|++|++ +|.+++....
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~ 499 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL 499 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH
Confidence 0001222356778888888654 7889999999999987666555 67999999999 8887543332
Q ss_pred -C-CCCCCCCeecccCCCC
Q 048551 367 -K-GVFNNKTRISLAGNGK 383 (409)
Q Consensus 367 -~-~~~~~L~~L~l~~Np~ 383 (409)
. ..+++|+.|++++|+.
T Consensus 500 ~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 500 ANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HTGGGGGGSSEEEEESSCC
T ss_pred HHHHhCCCCCEEeeeCCCC
Confidence 2 4589999999999965
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=3.2e-20 Score=165.67 Aligned_cols=166 Identities=22% Similarity=0.203 Sum_probs=141.8
Q ss_pred CCCCCCCCCCCceeeecCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCc
Q 048551 51 SSLTNSVNLCEWTGVTCASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAG 130 (409)
Q Consensus 51 ~~w~~~~~~c~~~g~~c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 130 (409)
..|..+.+.|.|.++.|. +++++ .+|..+. ++|++|+|++|.+++..|..|..+++|++|++++|.++.
T Consensus 10 ~~~~~~~~~Cs~~~v~c~--------~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~ 78 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCR--------SKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA 78 (229)
T ss_dssp -CCCCTTCEEETTEEECT--------TSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred hccCCCCCEEeCCEeEcc--------CCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC
Confidence 345567789999887774 56666 6776554 889999999999998888899999999999999999985
Q ss_pred cCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCC
Q 048551 131 EIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYN 209 (409)
Q Consensus 131 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~ 209 (409)
..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+ .+..
T Consensus 79 i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 55566889999999999999999766667889999999999999998 778888999999999999999998877 6888
Q ss_pred CCCCcEEEeecCcCcccCc
Q 048551 210 LSSLEMIYLHDNRLNGNLP 228 (409)
Q Consensus 210 l~~L~~L~l~~n~l~~~~p 228 (409)
+++|+.|++++|.+....+
T Consensus 158 l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CTTCCEEECTTSCBCTTBG
T ss_pred CCCCCEEEeeCCCccCCcc
Confidence 9999999999999886543
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=2.6e-20 Score=187.00 Aligned_cols=189 Identities=24% Similarity=0.335 Sum_probs=136.3
Q ss_pred CCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCC
Q 048551 93 RLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSN 172 (409)
Q Consensus 93 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 172 (409)
++++|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888885 66655 377888888888888 667 446788888888888885 666 554 78888888
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccccccccc
Q 048551 173 RNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPL 252 (409)
Q Consensus 173 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 252 (409)
+|.+++ +|. .+++|++|++++|.+++++. .+++|+.|++++|.++ .+|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~-~lp~-l~---~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLT-FLPE-LP---ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC-CC---TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCC-Ccch-hh---CCCCEEECcCCCCC-ch
Confidence 888875 555 56788888888888877443 5677888888888887 4666 32 77888888888877 55
Q ss_pred chhhhcCCCC-------CEEEcccCcCccccchhhhhcccCcEEecccCCccccccccccCChhccCCCCCCccccCCCC
Q 048551 253 PDSFSNASNR-------ERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLK 325 (409)
Q Consensus 253 p~~l~~l~~L-------~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~ 325 (409)
|. +.. +| +.|++++|+++ .+|..+.. ++
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-------------------------------~lp~~l~~-----------l~ 230 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-------------------------------HIPENILS-----------LD 230 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-------------------------------CCCGGGGG-----------SC
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-------------------------------ecCHHHhc-----------CC
Confidence 55 433 45 66666666654 56665543 36
Q ss_pred CCCEEECcCCccccccchhhhcCCC
Q 048551 326 SIEELDLSSNNLSGQLPRLLVNLSF 350 (409)
Q Consensus 326 ~L~~L~Ls~N~l~~~~p~~~~~l~~ 350 (409)
+|+.|+|++|++++.+|..+..+..
T Consensus 231 ~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 231 PTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp TTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 6688888888888888887776543
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.7e-20 Score=164.94 Aligned_cols=162 Identities=15% Similarity=0.172 Sum_probs=143.6
Q ss_pred CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
.++++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 38999999999999666667899999999999999999766677899999999999999999666666899999999999
Q ss_pred ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccC
Q 048551 148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNL 227 (409)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~ 227 (409)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|.++|.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTB
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCcee
Confidence 9999997666678999999999999999997777778999999999999997764 4678999999999999999
Q ss_pred chHHhhCCC
Q 048551 228 PPVIGAKLP 236 (409)
Q Consensus 228 p~~~~~~l~ 236 (409)
|..++ .++
T Consensus 182 p~~~~-~l~ 189 (208)
T 2o6s_A 182 RNSAG-SVA 189 (208)
T ss_dssp BCTTS-SBC
T ss_pred eccCc-ccc
Confidence 98876 444
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=8.4e-20 Score=174.32 Aligned_cols=176 Identities=17% Similarity=0.106 Sum_probs=147.6
Q ss_pred CcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCcccc-CCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 70 LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLS-LRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 70 l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
-+.+++++++++ .+|..+. +.+++|+|++|+|++..+..+. .+++|++|++++|++++..+..|..+++|++|+++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 367888899998 6787665 4699999999999977777787 89999999999999997777789999999999999
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-cc---CCCCCCcEEEeecCcCc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PV---YNLSSLEMIYLHDNRLN 224 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~---~~l~~L~~L~l~~n~l~ 224 (409)
+|++++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++.+. .+ ..+++|+.|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999997767788999999999999999998888899999999999999999998766 34 56889999999999998
Q ss_pred ccCchHHhhCCCc--cceeeccccccc
Q 048551 225 GNLPPVIGAKLPN--LRKIVIALNNFT 249 (409)
Q Consensus 225 ~~~p~~~~~~l~~--L~~L~L~~n~l~ 249 (409)
.+|...+..++. ++.|++++|.+.
T Consensus 177 -~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 -KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -ccCHHHhhhccHhhcceEEecCCCcc
Confidence 566443336666 478888888876
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=4.3e-20 Score=170.96 Aligned_cols=170 Identities=21% Similarity=0.333 Sum_probs=80.9
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEe
Q 048551 91 LVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEAD 170 (409)
Q Consensus 91 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (409)
+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 3344444444444432 11 23444444444444444442 221 4444444444444444442 11 244444455555
Q ss_pred CCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccccccc
Q 048551 171 SNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTG 250 (409)
Q Consensus 171 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~ 250 (409)
+++|.+++. ..+..+++|++|++++|.+++. +.+..+++|+.|++++|.++ .+++ +. .+++|+.|++++|.+++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~-~~~~-l~-~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS-DIVP-LA-GLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccc-cchh-hc-CCCccCEEECCCCcCCC
Confidence 555444422 2344445555555555555443 34455555555566555555 2332 33 55666666666666653
Q ss_pred ccchhhhcCCCCCEEEcccCcCcc
Q 048551 251 PLPDSFSNASNRERLELSYNQFRG 274 (409)
Q Consensus 251 ~~p~~l~~l~~L~~L~Ls~N~l~~ 274 (409)
++ .+..+++|+.|++++|+++.
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -Ch-hhccCCCCCEEECcCCcccC
Confidence 22 25556666666666666554
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=1.6e-19 Score=160.10 Aligned_cols=152 Identities=19% Similarity=0.177 Sum_probs=131.9
Q ss_pred cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551 71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI 150 (409)
Q Consensus 71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 150 (409)
+.+++++++++ .+|..+. +++++|++++|.|++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45677788888 7777665 78999999999999777778999999999999999999877889999999999999999
Q ss_pred cccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcc
Q 048551 151 KLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNG 225 (409)
Q Consensus 151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~ 225 (409)
.++...+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+ .+..+++|+.|++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9995555567889999999999999998888889999999999999999988877 67788889999998888764
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2.7e-19 Score=158.66 Aligned_cols=155 Identities=17% Similarity=0.096 Sum_probs=137.6
Q ss_pred cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCC-ccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeec
Q 048551 71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIP-TNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCV 149 (409)
Q Consensus 71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~ 149 (409)
+.+++++|+++ .+|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 57888999998 6787664 467999999999997755 4588999999999999999977777899999999999999
Q ss_pred ccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCc
Q 048551 150 IKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLP 228 (409)
Q Consensus 150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p 228 (409)
|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..+ .+..+++|+.|++++|.+.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99997777789999999999999999998889999999999999999999999877 88889999999999999886544
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.5e-19 Score=167.29 Aligned_cols=170 Identities=20% Similarity=0.278 Sum_probs=150.3
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
+.++++|++++|.++ .++ .+..+++|++|++++|++++..+ +..+++|++|++++|.+++ +| .+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 348999999999998 455 58899999999999999996544 8999999999999999985 44 489999999999
Q ss_pred eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCccc
Q 048551 147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGN 226 (409)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 226 (409)
+++|.+++ + +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.++ .
T Consensus 119 L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~-~ 192 (291)
T 1h6t_A 119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-D 192 (291)
T ss_dssp CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-B
T ss_pred CCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC-C
Confidence 99999985 3 5688999999999999999865 568899999999999999998766 889999999999999998 5
Q ss_pred CchHHhhCCCccceeecccccccc
Q 048551 227 LPPVIGAKLPNLRKIVIALNNFTG 250 (409)
Q Consensus 227 ~p~~~~~~l~~L~~L~L~~n~l~~ 250 (409)
++. +. .+++|+.|++++|.++.
T Consensus 193 l~~-l~-~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 LRA-LA-GLKNLDVLELFSQECLN 214 (291)
T ss_dssp CGG-GT-TCTTCSEEEEEEEEEEC
T ss_pred Chh-hc-cCCCCCEEECcCCcccC
Confidence 664 55 89999999999999985
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.3e-19 Score=172.92 Aligned_cols=178 Identities=17% Similarity=0.135 Sum_probs=154.8
Q ss_pred CCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccC-CCCCCcEEEeecccccccCCccccCCCCCcEEeCC
Q 048551 94 LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIG-NLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSN 172 (409)
Q Consensus 94 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 172 (409)
-++++++++.++ .+|..+. +.+++|++++|.+++..+..+. .+++|++|++++|++++..+..|.++++|++|+++
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 368999999998 5776553 4689999999999977777777 89999999999999997777889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHh---hCCCccceeecccccc
Q 048551 173 RNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIG---AKLPNLRKIVIALNNF 248 (409)
Q Consensus 173 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~---~~l~~L~~L~L~~n~l 248 (409)
+|++.+..+..|.++++|++|++++|.+++..+ .+.++++|+.|++++|.++ .+|..++ ..+++|+.|+|++|++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCC
Confidence 999998777889999999999999999999877 8899999999999999999 6777664 3689999999999999
Q ss_pred ccccchhhhcCCC--CCEEEcccCcCccc
Q 048551 249 TGPLPDSFSNASN--RERLELSYNQFRGK 275 (409)
Q Consensus 249 ~~~~p~~l~~l~~--L~~L~Ls~N~l~~~ 275 (409)
++..+..+..++. ++.|++++|++...
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CccCHHHhhhccHhhcceEEecCCCccCC
Confidence 9766677888876 48899999998743
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=3.1e-19 Score=158.24 Aligned_cols=145 Identities=18% Similarity=0.187 Sum_probs=131.0
Q ss_pred CCCCceeeecC-------------CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcC
Q 048551 58 NLCEWTGVTCA-------------SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFAN 124 (409)
Q Consensus 58 ~~c~~~g~~c~-------------~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 124 (409)
..|.|..+.|. ++++|++++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|+++
T Consensus 9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 44566667664 68999999999997777789999999999999999998889999999999999999
Q ss_pred CCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcc
Q 048551 125 RNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSG 202 (409)
Q Consensus 125 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 202 (409)
+|.++...+..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999995555568899999999999999998888999999999999999999998888889999999999999998864
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=5.1e-19 Score=157.86 Aligned_cols=155 Identities=15% Similarity=0.156 Sum_probs=118.9
Q ss_pred CCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCC
Q 048551 94 LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNR 173 (409)
Q Consensus 94 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 173 (409)
-+.++.+++.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 467888888877 5665543 7888888888888877777788888888888888888755455677888888888888
Q ss_pred CCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccccccccc
Q 048551 174 NNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPL 252 (409)
Q Consensus 174 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~ 252 (409)
|.+++..+..|..+++|++|++++|.++.++..+..+++|+.|++++|.++ .++...+..+++|+.|++++|.+....
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 888866666678888888888888888866557778888888888888887 555443337788888888888877543
No 109
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=2.7e-21 Score=196.55 Aligned_cols=308 Identities=9% Similarity=0.042 Sum_probs=179.6
Q ss_pred cCCCcEEEecCCCCccc---cC------------ccccCCCCCCEEEccCCcccccCCcccc-CCCCCcEEEcCCC-cCC
Q 048551 67 CASLRFINIADNGVQGE---IP------------NELGNLVRLEKLILANNSFSGTIPTNLS-LRSKLMLFFANRN-ILA 129 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~---~p------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~ 129 (409)
+.++++|+++++..... .| .....+++|++|++++|.+++..+..+. .+++|++|++++| .++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 45899999999763211 12 1134678999999999999877666665 6899999999998 555
Q ss_pred cc-CCcccCCCCCCcEEEeecccccccCCcccc----CCCCCcEEeCCCCC--CCCC-CCCCCCCCCCCcEEEccCC-cC
Q 048551 130 GE-IPAEIGNLFKLEKLSFCVIKLTGQLPASIQ----NLSSHLEADSNRNN--FGGK-IPESPGQLRSLFYLNVGGN-QF 200 (409)
Q Consensus 130 ~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~----~l~~L~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~l~~n-~l 200 (409)
+. ++..+..+++|++|++++|.+++..+..+. .+++|++|++++|. +... ++..+..+++|++|++++| .+
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 32 444455799999999999998765544443 66799999999987 2211 1111234689999999988 22
Q ss_pred cccCcccCCCC------------------------------------------------------CCcEEEeecCcCccc
Q 048551 201 SGMFLPVYNLS------------------------------------------------------SLEMIYLHDNRLNGN 226 (409)
Q Consensus 201 ~~~~~~~~~l~------------------------------------------------------~L~~L~l~~n~l~~~ 226 (409)
.+....+..++ +|+.|++++|.+++.
T Consensus 225 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~ 304 (594)
T 2p1m_B 225 EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304 (594)
T ss_dssp HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHH
T ss_pred HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHH
Confidence 22111233333 444444444443322
Q ss_pred CchHHhhCCCccceeeccccccccc-cchhhhcCCCCCEEEcc---------cCcCccccchhhh--hcccCcEEecccC
Q 048551 227 LPPVIGAKLPNLRKIVIALNNFTGP-LPDSFSNASNRERLELS---------YNQFRGKSIWRSA--ATSYSQRLNDDDQ 294 (409)
Q Consensus 227 ~p~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls---------~N~l~~~~~~~~~--l~~l~~~L~l~~n 294 (409)
....+...+++|++|++++| +++. ++.....+++|++|+++ .+.+++.....+. .+++ +.|++..|
T Consensus 305 ~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L-~~L~~~~~ 382 (594)
T 2p1m_B 305 DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKL-ESVLYFCR 382 (594)
T ss_dssp HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTC-CEEEEEES
T ss_pred HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhH-HHHHHhcC
Confidence 22222223444444444444 2211 11112234445555442 1233322211111 2233 45555555
Q ss_pred CccccccccccCChhcc-CCCCCCccccC------------------------CCCCCCEEECcCCccccccchhhhc-C
Q 048551 295 NHHGRQQNICYLPTGIS-NLVNLDSLATD------------------------SLKSIEELDLSSNNLSGQLPRLLVN-L 348 (409)
Q Consensus 295 ~l~~~~~~l~~ip~~~~-~l~~L~~L~~~------------------------~l~~L~~L~Ls~N~l~~~~p~~~~~-l 348 (409)
.+++ .....+. .+++|+.|++. .+++|+.|++++ .+++..+..+.. +
T Consensus 383 ~l~~------~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~ 455 (594)
T 2p1m_B 383 QMTN------AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYA 455 (594)
T ss_dssp CCCH------HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHC
T ss_pred CcCH------HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhc
Confidence 5441 1111221 34555555543 356788888877 677665556655 8
Q ss_pred CCCcEEEe-eccceecCCCC--CCCCCCCeecccCCCC
Q 048551 349 SFLVLLNL-YNHFDGEVPTK--GVFNNKTRISLAGNGK 383 (409)
Q Consensus 349 ~~L~~L~L-~n~l~~~~p~~--~~~~~L~~L~l~~Np~ 383 (409)
++|++|++ +|.+++..+.. ..+++|+.|++++|+.
T Consensus 456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 88999999 77775543321 3578999999999964
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=1.4e-19 Score=183.46 Aligned_cols=173 Identities=21% Similarity=0.314 Sum_probs=93.8
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcE
Q 048551 89 GNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLE 168 (409)
Q Consensus 89 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 168 (409)
..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+++..| +..+++|++|+|++|.+++ +| .+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 344455555555555542 22 34555555555555555553222 5555555555555555542 22 4555555555
Q ss_pred EeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccccc
Q 048551 169 ADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF 248 (409)
Q Consensus 169 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l 248 (409)
|++++|.+.+. ..+..+++|+.|++++|.+++. +.+..+++|+.|++++|.+++..| +. .+++|+.|+|++|.+
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~-~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LA-GLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GT-TCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hc-cCCCCCEEECcCCCC
Confidence 55555555532 2345555666666666655554 445556666666666666663323 33 566666666666666
Q ss_pred ccccchhhhcCCCCCEEEcccCcCccc
Q 048551 249 TGPLPDSFSNASNRERLELSYNQFRGK 275 (409)
Q Consensus 249 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 275 (409)
++. ..+..+++|+.|+|++|++.+.
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCC--hHHccCCCCCEEEccCCcCcCC
Confidence 642 2456666666666666666554
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=1e-20 Score=196.28 Aligned_cols=231 Identities=19% Similarity=0.145 Sum_probs=133.0
Q ss_pred CHHHHHHHHHHHHhCC-CCCCCCCCCCC-CCCCCCceeeecC--CCcEEEecCCCCccccCccccCCCCCCEEE-----c
Q 048551 29 NETDRLALLAIKSQLH-DPLEVTSSLTN-SVNLCEWTGVTCA--SLRFINIADNGVQGEIPNELGNLVRLEKLI-----L 99 (409)
Q Consensus 29 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~-~~~~c~~~g~~c~--~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~-----L 99 (409)
.+.+++++.++..+.. ..+.....|.. ....+.|.+..++ +++.|+|.+|.+.. .+..+.....|+.+. +
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~ 208 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDD 208 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecCCccceEEeeCCCCCc-chhhHhhcCccCcccccCccc
Confidence 4567788888887762 22223334533 3456678877665 68899999999884 444433333333322 2
Q ss_pred cCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCC
Q 048551 100 ANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGK 179 (409)
Q Consensus 100 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 179 (409)
..|.+. ..+..+..++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .
T Consensus 209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~ 284 (727)
T 4b8c_D 209 IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S 284 (727)
T ss_dssp --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence 333333 45777889999999999999998 78888889999999999999999 88999999999999999999999 7
Q ss_pred CCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcC
Q 048551 180 IPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNA 259 (409)
Q Consensus 180 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (409)
+|..++.+++|++|+|++|.++.++..++++++|+.|++++|.+++.+|..+...-.....+++++|.+++.+|..
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~---- 360 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE---- 360 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc----
Confidence 7999999999999999999998765589999999999999999998888777521122335789999999877754
Q ss_pred CCCCEEEcccC
Q 048551 260 SNRERLELSYN 270 (409)
Q Consensus 260 ~~L~~L~Ls~N 270 (409)
|+.|+++.|
T Consensus 361 --l~~l~l~~n 369 (727)
T 4b8c_D 361 --RRFIEINTD 369 (727)
T ss_dssp -----------
T ss_pred --cceeEeecc
Confidence 455666666
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=156.90 Aligned_cols=147 Identities=21% Similarity=0.136 Sum_probs=131.8
Q ss_pred CCCCceeeecC-------------CCcEEEecCCCCccccC-ccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEc
Q 048551 58 NLCEWTGVTCA-------------SLRFINIADNGVQGEIP-NELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFA 123 (409)
Q Consensus 58 ~~c~~~g~~c~-------------~l~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 123 (409)
..|.|..+.|+ .+++|++++|++++..+ ..|..+++|++|++++|.+++..+..|.++++|++|++
T Consensus 9 C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 9 CRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 34566666664 57899999999997655 45899999999999999999888889999999999999
Q ss_pred CCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 048551 124 NRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGM 203 (409)
Q Consensus 124 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 203 (409)
++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|..+++|++|++++|.+...
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99999977777899999999999999999988899999999999999999999988899999999999999999998764
Q ss_pred C
Q 048551 204 F 204 (409)
Q Consensus 204 ~ 204 (409)
.
T Consensus 169 c 169 (220)
T 2v70_A 169 C 169 (220)
T ss_dssp G
T ss_pred C
Confidence 3
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=4e-19 Score=180.11 Aligned_cols=170 Identities=20% Similarity=0.283 Sum_probs=150.5
Q ss_pred CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
.+|+.|++++|.+. .++ .+..+++|+.|+|++|.+++..+ +..+++|++|++++|.+++ +| .+..+++|++|++
T Consensus 43 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 43 NSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL 116 (605)
T ss_dssp TTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence 38999999999998 555 68999999999999999996554 8999999999999999984 44 6899999999999
Q ss_pred ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccC
Q 048551 148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNL 227 (409)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~ 227 (409)
++|.+++ + +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++ .+
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~-~l 190 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-DL 190 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-BC
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCC-CC
Confidence 9999985 3 4689999999999999999865 568899999999999999998776 889999999999999998 45
Q ss_pred chHHhhCCCccceeeccccccccc
Q 048551 228 PPVIGAKLPNLRKIVIALNNFTGP 251 (409)
Q Consensus 228 p~~~~~~l~~L~~L~L~~n~l~~~ 251 (409)
+ .+. .+++|+.|+|++|.+++.
T Consensus 191 ~-~l~-~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 191 R-ALA-GLKNLDVLELFSQECLNK 212 (605)
T ss_dssp G-GGT-TCTTCSEEECCSEEEECC
T ss_pred h-HHc-cCCCCCEEEccCCcCcCC
Confidence 4 455 899999999999999854
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=1e-18 Score=152.14 Aligned_cols=151 Identities=16% Similarity=0.150 Sum_probs=106.1
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
+.++++|++++|+++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 347888888888887 556 5777888888888888665 234577778888888888888766677777778888888
Q ss_pred eecccccccCCccccCCCCCcEEeCCCCC-CCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCc
Q 048551 147 FCVIKLTGQLPASIQNLSSHLEADSNRNN-FGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLN 224 (409)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~ 224 (409)
+++|.+++..|..+..+++|++|++++|. ++ .+| .+..+++|++|++++|.+++.. .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence 88888776667777777777777777776 44 344 4666677777777777666543 4556666666666666654
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=5.7e-19 Score=153.76 Aligned_cols=152 Identities=15% Similarity=0.171 Sum_probs=87.5
Q ss_pred CCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEE
Q 048551 114 LRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYL 193 (409)
Q Consensus 114 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 193 (409)
.+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3444444444444444 333 3444555555555555443 12345555555555555555555455556666666666
Q ss_pred EccCCcCcccCc-ccCCCCCCcEEEeecCc-CcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCc
Q 048551 194 NVGGNQFSGMFL-PVYNLSSLEMIYLHDNR-LNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQ 271 (409)
Q Consensus 194 ~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~ 271 (409)
++++|.+++..+ .+..+++|++|++++|. ++ .+| .+. .+++|++|++++|.+++ ++ .+..+++|++|++++|+
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~-~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK-TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG-GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc-CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 666666665444 56666777777777776 44 555 344 67777777777777774 33 56777778888888877
Q ss_pred Ccc
Q 048551 272 FRG 274 (409)
Q Consensus 272 l~~ 274 (409)
+.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 754
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=5.7e-19 Score=160.93 Aligned_cols=169 Identities=15% Similarity=0.233 Sum_probs=97.8
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeC
Q 048551 92 VRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADS 171 (409)
Q Consensus 92 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 171 (409)
.+++.++++++.+++.. .+..+++|++|++++|.++ .++ .++.+++|++|++++|++++. +. +.++++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEEC
Confidence 33444455555554222 3445555555555555555 333 355555555555555555532 22 555566666666
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccc
Q 048551 172 NRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGP 251 (409)
Q Consensus 172 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~ 251 (409)
++|++++ +|.. .. ++|++|++++|.+++. +.+..+++|+.|++++|+++ .++ .+. .+++|+.|++++|++++.
T Consensus 93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~-~~~-~l~-~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLK-SIV-MLG-FLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCC-BCG-GGG-GCTTCCEEECTTSCCCBC
T ss_pred CCCccCC-cCcc-cc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCC-CCh-HHc-cCCCCCEEECCCCcCcch
Confidence 6666553 2221 22 6666666666666653 34666677777777777776 344 344 667777777777777754
Q ss_pred cchhhhcCCCCCEEEcccCcCccc
Q 048551 252 LPDSFSNASNRERLELSYNQFRGK 275 (409)
Q Consensus 252 ~p~~l~~l~~L~~L~Ls~N~l~~~ 275 (409)
..+..+++|+.|++++|++++.
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 4567777777777777777654
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.2e-18 Score=158.70 Aligned_cols=168 Identities=18% Similarity=0.230 Sum_probs=112.2
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
+++.++++++.+++ ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++ ++. +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECC
Confidence 34455666666663 33 4666777777777777776 344 56677777777777777774 333 7777777777777
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCc
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLP 228 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p 228 (409)
+|++++ +|. +.. ++|++|++++|.+++. + .+..+++|++|++++|.+++. +.+..+++|+.|++++|.+++.
T Consensus 94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC--
T ss_pred CCccCC-cCc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch--
Confidence 777763 343 222 6777777777777643 2 466777777777777777765 3566777777777777777743
Q ss_pred hHHhhCCCccceeeccccccccc
Q 048551 229 PVIGAKLPNLRKIVIALNNFTGP 251 (409)
Q Consensus 229 ~~~~~~l~~L~~L~L~~n~l~~~ 251 (409)
..+. .+++|+.|++++|.+++.
T Consensus 166 ~~l~-~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 GGLT-RLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTST-TCCCCCEEEEEEEEEECC
T ss_pred HHhc-cCCCCCEEeCCCCcccCC
Confidence 3444 677777888887777644
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=7.8e-18 Score=145.95 Aligned_cols=131 Identities=20% Similarity=0.241 Sum_probs=110.5
Q ss_pred cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCc-cccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeec
Q 048551 71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPT-NLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCV 149 (409)
Q Consensus 71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~ 149 (409)
+++++++++++ .+|..+.. ++++|++++|.+++..+. .|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67888899997 78876653 899999999999866554 488899999999999999987788899999999999999
Q ss_pred ccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccC
Q 048551 150 IKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMF 204 (409)
Q Consensus 150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 204 (409)
|++++..+..|.++++|++|++++|++++..|..+..+++|++|++++|.+.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 9998777777888888999999998888888888888888888888888877543
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=3.3e-17 Score=141.97 Aligned_cols=132 Identities=24% Similarity=0.205 Sum_probs=115.0
Q ss_pred CEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCc-ccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCC
Q 048551 95 EKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPA-EIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNR 173 (409)
Q Consensus 95 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 173 (409)
+++++++|.++ .+|..+.. +|++|++++|.+++..+. .++.+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999997 67776543 899999999999865554 488999999999999999988888999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCch
Q 048551 174 NNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPP 229 (409)
Q Consensus 174 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~ 229 (409)
|++++..+..|.++++|++|++++|.+++..+ .+..+++|+.|++++|.+.+..+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 99998888889999999999999999998877 788899999999999999876654
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.2e-20 Score=189.95 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=143.2
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCc-------------CCccCCcccCCCCCCcEEE-eecccccc
Q 048551 89 GNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNI-------------LAGEIPAEIGNLFKLEKLS-FCVIKLTG 154 (409)
Q Consensus 89 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~p~~~~~l~~L~~L~-L~~n~l~~ 154 (409)
...++|+.|+|++|+++ .+|..++.+++|+.|++++|. +.+..|..++.+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 56788888999999887 788888888889988887764 4556677777788888887 55554331
Q ss_pred cCCc------cccC--CCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCccc
Q 048551 155 QLPA------SIQN--LSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGN 226 (409)
Q Consensus 155 ~~p~------~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~ 226 (409)
++. .+.. ...|+.|++++|.+++ +|. ++.+++|+.|++++|.++.++..++++++|+.|++++|.++ .
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~ 500 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-N 500 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-C
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-C
Confidence 111 0111 1258899999999985 665 88899999999999999866558889999999999999998 4
Q ss_pred CchHHhhCCCccceeecccccccccc-chhhhcCCCCCEEEcccCcCcccc
Q 048551 227 LPPVIGAKLPNLRKIVIALNNFTGPL-PDSFSNASNRERLELSYNQFRGKS 276 (409)
Q Consensus 227 ~p~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~~ 276 (409)
+| .+. .+++|+.|++++|.+++.. |..+..+++|+.|++++|++++.+
T Consensus 501 lp-~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 501 VD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CG-GGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred Cc-ccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 77 666 8899999999999999776 888999999999999999998876
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=3.4e-20 Score=186.80 Aligned_cols=172 Identities=15% Similarity=0.102 Sum_probs=136.0
Q ss_pred cCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeeccc-------------ccccCCccccCCCCCcEEe-CCCCC---
Q 048551 113 SLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIK-------------LTGQLPASIQNLSSHLEAD-SNRNN--- 175 (409)
Q Consensus 113 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-l~~n~--- 175 (409)
...+.|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 56788889999999987 788889889999999887664 4556677778888888887 44443
Q ss_pred ----------CCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeeccc
Q 048551 176 ----------FGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIAL 245 (409)
Q Consensus 176 ----------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~ 245 (409)
+... +. ..|+.|++++|.+++++ .+..+++|+.|++++|.++ .+|..++ .+++|+.|+|++
T Consensus 425 L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~ 495 (567)
T 1dce_A 425 LRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCS
T ss_pred hhhhhhhccccccc-Cc-----cCceEEEecCCCCCCCc-CccccccCcEeecCccccc-ccchhhh-cCCCCCEEECCC
Confidence 2211 11 24888999999998865 4888899999999999998 8888887 889999999999
Q ss_pred cccccccchhhhcCCCCCEEEcccCcCcccc-chhhh-hcccCcEEecccCCcc
Q 048551 246 NNFTGPLPDSFSNASNRERLELSYNQFRGKS-IWRSA-ATSYSQRLNDDDQNHH 297 (409)
Q Consensus 246 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~-l~~l~~~L~l~~n~l~ 297 (409)
|.+++ +| .++.+++|+.|++++|++++.. ...+. ++++ +.|++++|.++
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L-~~L~L~~N~l~ 546 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL-VLLNLQGNSLC 546 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC-CEEECTTSGGG
T ss_pred CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC-CEEEecCCcCC
Confidence 99985 56 7888999999999999998874 34444 5666 89999999888
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=3.6e-18 Score=177.13 Aligned_cols=191 Identities=27% Similarity=0.238 Sum_probs=124.5
Q ss_pred cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551 71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI 150 (409)
Q Consensus 71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 150 (409)
..++++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|
T Consensus 204 ~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 204 DEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred cCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence 33444444444 55778999999999999999999 78888889999999999999999 89999999999999999999
Q ss_pred cccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCC-CCcEEEeecCcCcccCc
Q 048551 151 KLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLS-SLEMIYLHDNRLNGNLP 228 (409)
Q Consensus 151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~-~L~~L~l~~n~l~~~~p 228 (409)
.++ .+|..|+++++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.++ .+.... ....+++++|.+++.+|
T Consensus 281 ~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 281 RLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp CCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred cCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 999 78999999999999999999998 788889999999999999999998877 443332 22347899999998877
Q ss_pred hHHhhCCCccceeecccc--------ccccccchhhhcCCCCCEEEcccCcCc
Q 048551 229 PVIGAKLPNLRKIVIALN--------NFTGPLPDSFSNASNRERLELSYNQFR 273 (409)
Q Consensus 229 ~~~~~~l~~L~~L~L~~n--------~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 273 (409)
.. |+.|+++.| .+.+..+..+..+..+....+++|-+.
T Consensus 359 ~~-------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 359 HE-------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CC------------------------------------------------CCC
T ss_pred cc-------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 54 445556655 334344444566666777788888775
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=137.27 Aligned_cols=128 Identities=20% Similarity=0.249 Sum_probs=98.8
Q ss_pred cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551 71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI 150 (409)
Q Consensus 71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 150 (409)
+.+++++++++ .+|..+. ++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56788888888 7776554 57888899888888 67778888888888888888888666667888888888888888
Q ss_pred cccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcc
Q 048551 151 KLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSG 202 (409)
Q Consensus 151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 202 (409)
.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8886666677777888888888887775555567777777777777776653
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=5.4e-17 Score=137.36 Aligned_cols=131 Identities=18% Similarity=0.105 Sum_probs=71.5
Q ss_pred CCCCEEEccCCccc-ccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEe
Q 048551 92 VRLEKLILANNSFS-GTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEAD 170 (409)
Q Consensus 92 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (409)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666665 45555555666666666666666533 4455666666666666666654555555566666666
Q ss_pred CCCCCCCCCC-CCCCCCCCCCcEEEccCCcCcccCc----ccCCCCCCcEEEeecCcCc
Q 048551 171 SNRNNFGGKI-PESPGQLRSLFYLNVGGNQFSGMFL----PVYNLSSLEMIYLHDNRLN 224 (409)
Q Consensus 171 l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~l~~L~~L~l~~n~l~ 224 (409)
+++|.+++.. +..+..+++|++|++++|.+++.++ .+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666655321 1344455555555555555544433 3344444444444444443
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=3.5e-17 Score=138.50 Aligned_cols=135 Identities=19% Similarity=0.113 Sum_probs=120.3
Q ss_pred CCcEEEecCCCCc-cccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 69 SLRFINIADNGVQ-GEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 69 ~l~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
++++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 8999999999998 78898899999999999999999965 77899999999999999999778888888999999999
Q ss_pred eccccccc-CCccccCCCCCcEEeCCCCCCCCCCC---CCCCCCCCCcEEEccCCcCcccCc
Q 048551 148 CVIKLTGQ-LPASIQNLSSHLEADSNRNNFGGKIP---ESPGQLRSLFYLNVGGNQFSGMFL 205 (409)
Q Consensus 148 ~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~ 205 (409)
++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+...+.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 99999853 22789999999999999999985544 378899999999999999877543
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=7.3e-16 Score=131.56 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=86.5
Q ss_pred cEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551 71 RFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI 150 (409)
Q Consensus 71 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 150 (409)
+.+++++++++ .+|..+. ++|++|++++|++++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 44555677777 5664443 68888888888888666666777888888888888887544455677777777777777
Q ss_pred cccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcc
Q 048551 151 KLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSG 202 (409)
Q Consensus 151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 202 (409)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 7775544456666667777777666664444445556666666666665554
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=4.9e-17 Score=134.78 Aligned_cols=126 Identities=16% Similarity=0.119 Sum_probs=80.3
Q ss_pred CCcEEEecCCCCc-cccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 69 SLRFINIADNGVQ-GEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 69 ~l~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..++.+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 5677777777776 56666667777777777777777644 55666677777777777776556655556666777777
Q ss_pred eccccccc-CCccccCCCCCcEEeCCCCCCCCCCC---CCCCCCCCCcEEEcc
Q 048551 148 CVIKLTGQ-LPASIQNLSSHLEADSNRNNFGGKIP---ESPGQLRSLFYLNVG 196 (409)
Q Consensus 148 ~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~ 196 (409)
++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 66666642 23556666666666666666654433 245555666666554
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=1.5e-15 Score=131.50 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=95.9
Q ss_pred CEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCC
Q 048551 95 EKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRN 174 (409)
Q Consensus 95 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 174 (409)
+++++++|.++ .+|..+. ++|++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57888888887 5665543 57888888888887 67777777888888888888887666667778888888888888
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcc
Q 048551 175 NFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNG 225 (409)
Q Consensus 175 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~ 225 (409)
.+++..+..|.++++|++|++++|.++..++ .+..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8877766777777888888888887777666 56677777777777777653
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=5.7e-16 Score=145.78 Aligned_cols=121 Identities=13% Similarity=0.189 Sum_probs=76.3
Q ss_pred CCcEEEecCCCCccccCccccC-CCCCCEEEccCCccc--ccCCccccCCCCCcEEEcCCCcCCccCCcccCC-------
Q 048551 69 SLRFINIADNGVQGEIPNELGN-LVRLEKLILANNSFS--GTIPTNLSLRSKLMLFFANRNILAGEIPAEIGN------- 138 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~------- 138 (409)
+++.|.++++ +.+.--..+.. +++|++|||++|++. ...+..+ +.++.+.+..|.+. +..|.+
T Consensus 26 ~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I~---~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 26 SITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFVP---AYAFSNVVNGVTK 98 (329)
T ss_dssp HCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEEC---TTTTEEEETTEEE
T ss_pred ceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---cccccccccccccC---HHHhccccccccc
Confidence 5777887764 22111112333 778999999999887 2222222 22444555555322 234555
Q ss_pred -CCCCcEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccC
Q 048551 139 -LFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGG 197 (409)
Q Consensus 139 -l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 197 (409)
+++|+.+++.+ .++...+..|.++++|+.+++.+|.+....+..|.++.++.++..+.
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 88888888887 77755566788888888888888887766677777777777666655
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=1.4e-16 Score=131.89 Aligned_cols=110 Identities=17% Similarity=0.169 Sum_probs=71.6
Q ss_pred CCCCEEEccCCccc-ccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEe
Q 048551 92 VRLEKLILANNSFS-GTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEAD 170 (409)
Q Consensus 92 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 170 (409)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56777788877777 56777777777777777777777743 5566777777777777777755666666666676776
Q ss_pred CCCCCCCCC-CCCCCCCCCCCcEEEccCCcCccc
Q 048551 171 SNRNNFGGK-IPESPGQLRSLFYLNVGGNQFSGM 203 (409)
Q Consensus 171 l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 203 (409)
+++|.+++. .+..+..+++|++|++++|.+++.
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 666666542 224445555555555555555443
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=3.7e-15 Score=127.12 Aligned_cols=132 Identities=19% Similarity=0.168 Sum_probs=96.3
Q ss_pred CCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCC
Q 048551 94 LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNR 173 (409)
Q Consensus 94 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 173 (409)
.+.+++++++++ .+|..+ .++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888888887 455433 36788888888888755555677788888888888888755555667788888888888
Q ss_pred CCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCc
Q 048551 174 NNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLP 228 (409)
Q Consensus 174 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p 228 (409)
|.+++..+..+..+++|++|++++|.+++.++ .+..+++|+.|++++|.+.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88876666667777888888888887776665 45667777777777777775443
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=4e-15 Score=139.97 Aligned_cols=195 Identities=13% Similarity=0.083 Sum_probs=113.6
Q ss_pred CCCcEEEecCCCCc--------------------cccCccccC--------CCCCCEEEccCCcccccCCccccCCCCCc
Q 048551 68 ASLRFINIADNGVQ--------------------GEIPNELGN--------LVRLEKLILANNSFSGTIPTNLSLRSKLM 119 (409)
Q Consensus 68 ~~l~~L~L~~n~l~--------------------~~~p~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 119 (409)
.+|++|||++|++. ...+..|.+ +++|+.++|.+ .++...+.+|.++++|+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK 127 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence 47899999998887 112234555 77777777777 66655556677777777
Q ss_pred EEEcCCCcCCccCCcccCCCCCCcEEEeecccc----cccCCcccc----------------------------------
Q 048551 120 LFFANRNILAGEIPAEIGNLFKLEKLSFCVIKL----TGQLPASIQ---------------------------------- 161 (409)
Q Consensus 120 ~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l----~~~~p~~l~---------------------------------- 161 (409)
.+++.+|.++...+..|..+.++.++....+.. .......|.
T Consensus 128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l 207 (329)
T 3sb4_A 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL 207 (329)
T ss_dssp EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence 777777777645555566666555554433111 000000111
Q ss_pred ----------------CCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCc-EEEeecCcC
Q 048551 162 ----------------NLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLE-MIYLHDNRL 223 (409)
Q Consensus 162 ----------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~-~L~l~~n~l 223 (409)
.+++|+.+++++|.++...+..|.++.+|+.+++.+| ++.+.+ .|.++.+|+ .+++.+ .+
T Consensus 208 ~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l 285 (329)
T 3sb4_A 208 TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV 285 (329)
T ss_dssp EEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred EEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence 1456666666666666444555666666666666665 554444 566666666 666665 44
Q ss_pred cccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEE
Q 048551 224 NGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLE 266 (409)
Q Consensus 224 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 266 (409)
+ .++...|..+++|+.++++.|.++...+..|.++++|+.++
T Consensus 286 ~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 286 T-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp C-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred e-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 4 44444444566666666666666655555666666666654
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=2.1e-15 Score=128.63 Aligned_cols=132 Identities=17% Similarity=0.130 Sum_probs=71.5
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCC-CCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCC
Q 048551 88 LGNLVRLEKLILANNSFSGTIPTNLSLRS-KLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSH 166 (409)
Q Consensus 88 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 166 (409)
+.++++|++|++++|.++ .++. +..+. +|++|++++|.+++. ..++.+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 344455555555555555 2332 22222 555555555555532 345555566666666666553322333556666
Q ss_pred cEEeCCCCCCCCCCCC--CCCCCCCCcEEEccCCcCcccCcc----cCCCCCCcEEEeecCcCc
Q 048551 167 LEADSNRNNFGGKIPE--SPGQLRSLFYLNVGGNQFSGMFLP----VYNLSSLEMIYLHDNRLN 224 (409)
Q Consensus 167 ~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~~~l~~L~~L~l~~n~l~ 224 (409)
++|++++|.+. .+|. .+..+++|++|++++|.+...+.. +..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 66666666654 3333 455566666666666666554332 556667777777766654
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=3.1e-13 Score=130.23 Aligned_cols=173 Identities=11% Similarity=0.055 Sum_probs=113.6
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEE
Q 048551 90 NLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEA 169 (409)
Q Consensus 90 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 169 (409)
.+..++.+.+.++ ++..-..+|.+. +|+.+.+..+ ++..-..+|.+ .+|+.+.+.. .++...+..|.++++|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3456777777653 443445566664 6777777665 55344455666 3677777765 5554555677778888888
Q ss_pred eCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCccceeecccccc
Q 048551 170 DSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNF 248 (409)
Q Consensus 170 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l 248 (409)
++.+|.++......|. ..+|+.+.+..+ ++.+.. .|.++++|+.+++..+ ++ .++...+.. .+|+.+.+. +.+
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCc
Confidence 8887777755455555 477888887744 555555 6777778888888764 44 556555533 678888773 445
Q ss_pred ccccchhhhcCCCCCEEEcccCcCc
Q 048551 249 TGPLPDSFSNASNRERLELSYNQFR 273 (409)
Q Consensus 249 ~~~~p~~l~~l~~L~~L~Ls~N~l~ 273 (409)
+......|.+|++|+.+++.+|.+.
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCC
T ss_pred cEEChhHhhCCCCCCEEEeCCcccc
Confidence 5455667788888888888776654
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=7.3e-15 Score=125.22 Aligned_cols=130 Identities=18% Similarity=0.133 Sum_probs=76.4
Q ss_pred CCCCCcEEEeecccccccCCccccCCC-CCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcE
Q 048551 138 NLFKLEKLSFCVIKLTGQLPASIQNLS-SHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEM 215 (409)
Q Consensus 138 ~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~ 215 (409)
.+.+|++|++++|.++ .+|. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++.++ .+..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3445555555555554 2232 22322 555555555555543 345566666666666666666554 2356666777
Q ss_pred EEeecCcCcccCch--HHhhCCCccceeeccccccccccch----hhhcCCCCCEEEcccCcCcc
Q 048551 216 IYLHDNRLNGNLPP--VIGAKLPNLRKIVIALNNFTGPLPD----SFSNASNRERLELSYNQFRG 274 (409)
Q Consensus 216 L~l~~n~l~~~~p~--~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~ 274 (409)
|++++|.++ .+|. .+. .+++|+.|++++|.++ .+|. .+..+++|+.|++++|....
T Consensus 93 L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 777777665 5554 444 6677777777777776 3444 36777777777777776543
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=3.9e-17 Score=142.20 Aligned_cols=154 Identities=16% Similarity=0.174 Sum_probs=82.6
Q ss_pred cCCCCCCEEEccCCcccccCCc------cccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccC
Q 048551 89 GNLVRLEKLILANNSFSGTIPT------NLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQN 162 (409)
Q Consensus 89 ~~l~~L~~L~L~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 162 (409)
.....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3344555555666655555443 44455555555555555542 33 4444455555555555444 33433333
Q ss_pred CCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeecCcCcccCch--HHhhCCCccce
Q 048551 163 LSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHDNRLNGNLPP--VIGAKLPNLRK 240 (409)
Q Consensus 163 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~~l~~L~~ 240 (409)
+++|++|++++|.+++.+ .+..+++|+.|++++|.++ .++. .+. .+++|++
T Consensus 92 ------------------------~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~-~l~~L~~ 144 (198)
T 1ds9_A 92 ------------------------ADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLA-ALDKLED 144 (198)
T ss_dssp ------------------------HHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECC-CHHHHHHHT-TTTTCSE
T ss_pred ------------------------CCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCC-chhHHHHHh-cCCCCCE
Confidence 344555555555554432 3445566666666666665 3332 343 5667777
Q ss_pred eeccccccccccch----------hhhcCCCCCEEEcccCcCcc
Q 048551 241 IVIALNNFTGPLPD----------SFSNASNRERLELSYNQFRG 274 (409)
Q Consensus 241 L~L~~n~l~~~~p~----------~l~~l~~L~~L~Ls~N~l~~ 274 (409)
|++++|.+++..|. .+..+++|+.|| +|.++.
T Consensus 145 L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred EEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 77777766655443 266777777776 555543
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=4.9e-13 Score=128.87 Aligned_cols=259 Identities=13% Similarity=0.080 Sum_probs=179.9
Q ss_pred CCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEe
Q 048551 68 ASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSF 147 (409)
Q Consensus 68 ~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L 147 (409)
..++.+.+.+ .++..-..+|.+. +|+.+.+..+ ++..-..+|.+. +|+.+.+.. .++..-+..|.++++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3666677664 3553445567774 7999999877 665566677774 799999986 666455677999999999999
Q ss_pred ecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCccc
Q 048551 148 CVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGN 226 (409)
Q Consensus 148 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~ 226 (409)
..|.++......|. ..+|+.+.+..+ +.......|.++++|+.+++..+ ++.+.. .|.+ .+|+.+.+. +.++ .
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~-~ 261 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT-N 261 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC-E
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc-E
Confidence 99999844444555 689999999854 66666778999999999999875 555555 5666 789999994 4566 6
Q ss_pred CchHHhhCCCccceeeccccccc-----cccchhhhcCCCCCEEEcccCcCccccchhhhhcccCcEEecccCCcccccc
Q 048551 227 LPPVIGAKLPNLRKIVIALNNFT-----GPLPDSFSNASNRERLELSYNQFRGKSIWRSAATSYSQRLNDDDQNHHGRQQ 301 (409)
Q Consensus 227 ~p~~~~~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~l~~l~~~L~l~~n~l~~~~~ 301 (409)
++...+..+++|+.+++.+|.+. ...+..|.+|++|+.+++.. .++
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~---------------------------- 312 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR---------------------------- 312 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC----------------------------
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE----------------------------
Confidence 76666668999999999888764 35566789999999998873 343
Q ss_pred ccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCCC-CCC-CCCCeecc
Q 048551 302 NICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPTK-GVF-NNKTRISL 378 (409)
Q Consensus 302 ~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~~-~~~-~~L~~L~l 378 (409)
.++... |.++++|+.+++..| ++.....+|.++ +|+.+++ +|......+.. ..+ .+++.+.+
T Consensus 313 ---~I~~~a----------F~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 313 ---ILGQGL----------LGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp ---EECTTT----------TTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred ---EEhhhh----------hcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 222211 445566777777544 554556677777 7888888 55554332222 233 24556655
Q ss_pred cCC
Q 048551 379 AGN 381 (409)
Q Consensus 379 ~~N 381 (409)
-.+
T Consensus 378 p~~ 380 (401)
T 4fdw_A 378 PAE 380 (401)
T ss_dssp CGG
T ss_pred CHH
Confidence 544
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=4.2e-17 Score=142.01 Aligned_cols=131 Identities=21% Similarity=0.208 Sum_probs=106.7
Q ss_pred CCcEEEecCCCCccccCc------cccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCC
Q 048551 69 SLRFINIADNGVQGEIPN------ELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKL 142 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 142 (409)
.++.++++.+.++|.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 566677777777777666 89999999999999999996 67 8999999999999999999 688888888999
Q ss_pred cEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCC-CCCCCCCCCcEEEccCCcCcccC
Q 048551 143 EKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIP-ESPGQLRSLFYLNVGGNQFSGMF 204 (409)
Q Consensus 143 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~ 204 (409)
++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 999999999985 45 68888889999999888874322 34566777777777777766543
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.52 E-value=7.1e-14 Score=118.37 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=66.4
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEee
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFC 148 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~ 148 (409)
..+++++++|+++ .+|..+. ++|++|+|++|.|++..|..|.++++|++|++++|++++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3467777788887 5665553 677777777777776666667777777777777777664444445566666666666
Q ss_pred cccccccCCccccCCCCCcEEeCCCCCCC
Q 048551 149 VIKLTGQLPASIQNLSSHLEADSNRNNFG 177 (409)
Q Consensus 149 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 177 (409)
+|++++..+..|..+++|++|++++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 66665433334555555555555555544
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=2e-13 Score=116.09 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=66.6
Q ss_pred CcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeec
Q 048551 70 LRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCV 149 (409)
Q Consensus 70 l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~ 149 (409)
-+.+++++|+++ .+|..+. ++|++|+|++|.|++..|..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 467788888886 6776554 6777888877777766666677777777777777777643333455666666666666
Q ss_pred ccccccCCccccCCCCCcEEeCCCCCCC
Q 048551 150 IKLTGQLPASIQNLSSHLEADSNRNNFG 177 (409)
Q Consensus 150 n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 177 (409)
|++++..+..|..+++|++|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 6665333333555555555555555544
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=3.5e-13 Score=114.11 Aligned_cols=105 Identities=16% Similarity=0.178 Sum_probs=56.7
Q ss_pred CCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCC
Q 048551 94 LEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNR 173 (409)
Q Consensus 94 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~ 173 (409)
.+++++++|.++ .+|..+ .+.|++|++++|.+++..|..|..+++|++|++++|++++..+..|.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456666666666 345443 25556666666666544455555555555555555555543333445555555555555
Q ss_pred CCCCCCCCCCCCCCCCCcEEEccCCcCc
Q 048551 174 NNFGGKIPESPGQLRSLFYLNVGGNQFS 201 (409)
Q Consensus 174 n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 201 (409)
|++++..+..|..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555444444555555555555555444
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=6.9e-13 Score=112.68 Aligned_cols=105 Identities=19% Similarity=0.232 Sum_probs=59.3
Q ss_pred CEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCCCC
Q 048551 95 EKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSNRN 174 (409)
Q Consensus 95 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 174 (409)
+.+++++|.++ .+|..+. +.|++|++++|.+++..|..|+.+++|++|++++|++++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56666666665 4555442 56666666666666555555666666666666666665433333455555666666655
Q ss_pred CCCCCCCCCCCCCCCCcEEEccCCcCcc
Q 048551 175 NFGGKIPESPGQLRSLFYLNVGGNQFSG 202 (409)
Q Consensus 175 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 202 (409)
++++..+..|..+++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 5554333345555555555555555443
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.31 E-value=8e-12 Score=118.12 Aligned_cols=102 Identities=16% Similarity=0.103 Sum_probs=85.6
Q ss_pred EEecCC-CCccccCccccCCCCCCEEEccC-CcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551 73 INIADN-GVQGEIPNELGNLVRLEKLILAN-NSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI 150 (409)
Q Consensus 73 L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 150 (409)
++++++ +++ .+|. +..+++|++|+|++ |.|++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 345566 788 6888 99999999999996 9999777788999999999999999999888888999999999999999
Q ss_pred cccccCCccccCCCCCcEEeCCCCCCC
Q 048551 151 KLTGQLPASIQNLSSHLEADSNRNNFG 177 (409)
Q Consensus 151 ~l~~~~p~~l~~l~~L~~L~l~~n~l~ 177 (409)
++++..+..+..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 99855445555555 899999988876
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=4.8e-14 Score=134.63 Aligned_cols=164 Identities=13% Similarity=0.045 Sum_probs=75.1
Q ss_pred CCCCEEEccCCcccccCCcccc-----CCCCCcEEEcCCCcCCccCCccc-CCCCCCcEEEeecccccccCCccc-----
Q 048551 92 VRLEKLILANNSFSGTIPTNLS-----LRSKLMLFFANRNILAGEIPAEI-GNLFKLEKLSFCVIKLTGQLPASI----- 160 (409)
Q Consensus 92 ~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l----- 160 (409)
+.|++|++++|.++......+. ..++|++|++++|.+++.....+ ..+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 3455555555555433222221 12455555555555543222111 123445555555555543222222
Q ss_pred cCCCCCcEEeCCCCCCCCC----CCCCCCCCCCCcEEEccCCcCcccC----c-ccCCCCCCcEEEeecCcCccc----C
Q 048551 161 QNLSSHLEADSNRNNFGGK----IPESPGQLRSLFYLNVGGNQFSGMF----L-PVYNLSSLEMIYLHDNRLNGN----L 227 (409)
Q Consensus 161 ~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~----~-~~~~l~~L~~L~l~~n~l~~~----~ 227 (409)
...++|++|++++|.++.. ++..+...++|++|++++|.+.... . .+...++|+.|++++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 1234555555555555321 1122234455555555555554321 1 334445566666666666532 2
Q ss_pred chHHhhCCCccceeeccccccccccchhh
Q 048551 228 PPVIGAKLPNLRKIVIALNNFTGPLPDSF 256 (409)
Q Consensus 228 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l 256 (409)
+..+. ..++|++|+|++|.+++.....+
T Consensus 232 ~~~L~-~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 232 ARAAR-EHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHH-HCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHH-hCCCCCEEeccCCCCCHHHHHHH
Confidence 22222 34566666666666654433333
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.27 E-value=2.9e-10 Score=109.42 Aligned_cols=291 Identities=12% Similarity=-0.015 Sum_probs=147.1
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
|.+|+.+.+.. .++..-..+|.++++|+.+++..+ ++..-...|.++..|+.+.+..+ ++.....+|.++..++...
T Consensus 70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEEC
T ss_pred CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccccccc
Confidence 55777777764 355334456777777777777654 44344456667777766655543 2212223344333222221
Q ss_pred eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcc
Q 048551 147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNG 225 (409)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~ 225 (409)
. ..........|.++++|+.+.+..+. .......|.++.+|+.+.+..+ ++.... .+.++..|+.+.+..+...
T Consensus 147 ~--~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~- 221 (394)
T 4fs7_A 147 P--EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY- 221 (394)
T ss_dssp C--TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-
T ss_pred C--ccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-
Confidence 1 11121233456666777777775443 2244455666677777766554 333333 5556666666665544322
Q ss_pred cCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccc
Q 048551 226 NLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNIC 304 (409)
Q Consensus 226 ~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~ 304 (409)
+....+ ...+|+.+.+... ++......+..+..++.+.+..+... .....+. ...+ +.+....+.+.
T Consensus 222 -i~~~~~-~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l-~~~~~~~~~i~------- 289 (394)
T 4fs7_A 222 -LGDFAL-SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGL-KKVIYGSVIVP------- 289 (394)
T ss_dssp -ECTTTT-TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTC-CEEEECSSEEC-------
T ss_pred -eehhhc-ccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eecccccccccc-ceeccCceeec-------
Confidence 222222 3345555555432 22222334455555555555443221 1111111 0000 11211111110
Q ss_pred cCChhccCCCCCCccc------------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEeeccceecCCCC--CCC
Q 048551 305 YLPTGISNLVNLDSLA------------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEVPTK--GVF 370 (409)
Q Consensus 305 ~ip~~~~~l~~L~~L~------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~n~l~~~~p~~--~~~ 370 (409)
...+..+.+|+.+. |.++.+|+.+++..+ ++.....+|.++.+|+.+++..++. .+... ..+
T Consensus 290 --~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l~-~I~~~aF~~C 365 (394)
T 4fs7_A 290 --EKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLSLR-KIGANAFQGC 365 (394)
T ss_dssp --TTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTTCC-EECTTTBTTC
T ss_pred --cccccccccccccccccccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcccc-EehHHHhhCC
Confidence 00122222222222 677888888888754 6645567888889999999844454 34433 567
Q ss_pred CCCCeecccCC
Q 048551 371 NNKTRISLAGN 381 (409)
Q Consensus 371 ~~L~~L~l~~N 381 (409)
++|+.+++..+
T Consensus 366 ~~L~~i~lp~~ 376 (394)
T 4fs7_A 366 INLKKVELPKR 376 (394)
T ss_dssp TTCCEEEEEGG
T ss_pred CCCCEEEECCC
Confidence 88888888655
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=3.3e-13 Score=128.81 Aligned_cols=161 Identities=13% Similarity=0.127 Sum_probs=109.4
Q ss_pred CCCCcEEEcCCCcCCccCCccc----C-CCCCCcEEEeecccccccCCccc-cCCCCCcEEeCCCCCCCCCCCCCC----
Q 048551 115 RSKLMLFFANRNILAGEIPAEI----G-NLFKLEKLSFCVIKLTGQLPASI-QNLSSHLEADSNRNNFGGKIPESP---- 184 (409)
Q Consensus 115 l~~L~~L~l~~n~l~~~~p~~~----~-~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~~~~~---- 184 (409)
++.|++|++++|.++......+ . ..++|++|++++|.++......+ ..+++|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678999999999875433332 2 23689999999998875433333 245678899999998874332222
Q ss_pred -CCCCCCcEEEccCCcCcccCc-----ccCCCCCCcEEEeecCcCccc----CchHHhhCCCccceeeccccccccc---
Q 048551 185 -GQLRSLFYLNVGGNQFSGMFL-----PVYNLSSLEMIYLHDNRLNGN----LPPVIGAKLPNLRKIVIALNNFTGP--- 251 (409)
Q Consensus 185 -~~l~~L~~L~l~~n~l~~~~~-----~~~~l~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~--- 251 (409)
...++|++|++++|.++.... .+...++|++|++++|.+++. ++..+. ..++|++|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD-RNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG-GCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh-cCCCcCeEECCCCCCCHHHHH
Confidence 245778888888888865321 345677888888888887642 233344 567788888888888743
Q ss_pred -cchhhhcCCCCCEEEcccCcCcccc
Q 048551 252 -LPDSFSNASNRERLELSYNQFRGKS 276 (409)
Q Consensus 252 -~p~~l~~l~~L~~L~Ls~N~l~~~~ 276 (409)
++..+..+++|++|+|++|.+++..
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 3334556678888888888887644
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=3.5e-11 Score=113.69 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=89.4
Q ss_pred CEEEccCC-cccccCCccccCCCCCcEEEcCC-CcCCccCCcccCCCCCCcEEEeecccccccCCccccCCCCCcEEeCC
Q 048551 95 EKLILANN-SFSGTIPTNLSLRSKLMLFFANR-NILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPASIQNLSSHLEADSN 172 (409)
Q Consensus 95 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 172 (409)
..++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|+.+++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 888 5787 99999999999996 99997666789999999999999999998888889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEccCCcCccc
Q 048551 173 RNNFGGKIPESPGQLRSLFYLNVGGNQFSGM 203 (409)
Q Consensus 173 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 203 (409)
+|++++..+..+..++ |++|++.+|.+...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 9999866666666655 99999999988643
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.14 E-value=1.4e-09 Score=104.67 Aligned_cols=297 Identities=11% Similarity=0.016 Sum_probs=193.3
Q ss_pred CccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecccccccCCcc
Q 048551 80 VQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIKLTGQLPAS 159 (409)
Q Consensus 80 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 159 (409)
++..-..+|.++++|+.+.|..+ ++..-..+|.++++|+.+++..+ ++..-...|.++.+|+.+.+..+ +.......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 34234557889999999999754 77556678999999999999765 55344566888889988776544 44344556
Q ss_pred ccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchHHhhCCCcc
Q 048551 160 IQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPVIGAKLPNL 238 (409)
Q Consensus 160 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L 238 (409)
|.++..++...... +.......|.++.+|+.+.+.++. ..... .|.++.+|+.+++..+ ++ .++...+..+..|
T Consensus 136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L 210 (394)
T 4fs7_A 136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILL 210 (394)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTC
T ss_pred eecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhcccccc
Confidence 66665444333222 222345678999999999998654 33444 7888999999999876 44 5666656688999
Q ss_pred ceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecccCCccccccccccCChhccCCCCCC
Q 048551 239 RKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDDDQNHHGRQQNICYLPTGISNLVNLD 317 (409)
Q Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~ 317 (409)
+.+.+..+... +........+|+.+.+... ++......+. ...+ +.+.+..+... --...+..+..++
T Consensus 211 ~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l-~~~~~~~~~~~-------i~~~~F~~~~~l~ 279 (394)
T 4fs7_A 211 ENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDL-ESISIQNNKLR-------IGGSLFYNCSGLK 279 (394)
T ss_dssp CBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSC-CEEEECCTTCE-------ECSCTTTTCTTCC
T ss_pred ceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccc-eeEEcCCCcce-------eeccccccccccc
Confidence 99988776443 3344455678898887543 2222211111 1112 45555444322 1112344444544
Q ss_pred ccc----------cCCCCCCCEEECcCCccccccchhhhcCCCCcEEEeeccceecCCCC--CCCCCCCeecccCCCCce
Q 048551 318 SLA----------TDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEVPTK--GVFNNKTRISLAGNGKLC 385 (409)
Q Consensus 318 ~L~----------~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~n~l~~~~p~~--~~~~~L~~L~l~~Np~l~ 385 (409)
.+. |.++.+|+.+.+..+ ++.+...+|.++.+|+.+++.++++ .+... ..+.+|+.+.+..| +.
T Consensus 280 ~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~-~I~~~aF~~c~~L~~i~lp~~--l~ 355 (394)
T 4fs7_A 280 KVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYLVE-EIGKRSFRGCTSLSNINFPLS--LR 355 (394)
T ss_dssp EEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTTCC-EECTTTTTTCTTCCEECCCTT--CC
T ss_pred eeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCccc-EEhHHhccCCCCCCEEEECcc--cc
Confidence 443 778999999999865 6655667899999999999955554 34433 56788999998766 33
Q ss_pred ecCCCCCCCCCCCCC
Q 048551 386 GGFDGLHSPSCHSKD 400 (409)
Q Consensus 386 g~~p~~~~~~~~~~~ 400 (409)
.|++..|..|..-+
T Consensus 356 -~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 356 -KIGANAFQGCINLK 369 (394)
T ss_dssp -EECTTTBTTCTTCC
T ss_pred -EehHHHhhCCCCCC
Confidence 45544566676443
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.02 E-value=3.7e-08 Score=94.60 Aligned_cols=147 Identities=11% Similarity=-0.023 Sum_probs=75.4
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCCc---ccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEE
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANNS---FSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKL 145 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 145 (409)
.|+.+.+..+ ++..-..+|.++++|+.+.+..|. ++..-..+|.++.+|+.+.+..+ ++......|..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 3566666543 443344566666677777666543 44333455666666666655443 332333446666667766
Q ss_pred EeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCcccCCCCCCcEEEeec
Q 048551 146 SFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPVYNLSSLEMIYLHD 220 (409)
Q Consensus 146 ~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~ 220 (409)
.+..+ +.......|..+..|+.+.+..+ +...-...|.+ .+|+.+.+..+...-....+.++.+++......
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTITSDS 214 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEEEECC
T ss_pred cccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhccccceecccc
Confidence 66533 22234445666666666666543 33233334433 456666665443221112455555555555443
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.00 E-value=2.5e-10 Score=108.12 Aligned_cols=68 Identities=16% Similarity=0.240 Sum_probs=41.5
Q ss_pred CCCCCcEEEeecCcCcccCchHHhh--CCCccceeeccccccccc----cchhhhcCCCCCEEEcccCcCcccc
Q 048551 209 NLSSLEMIYLHDNRLNGNLPPVIGA--KLPNLRKIVIALNNFTGP----LPDSFSNASNRERLELSYNQFRGKS 276 (409)
Q Consensus 209 ~l~~L~~L~l~~n~l~~~~p~~~~~--~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~ 276 (409)
.+++|+.|++.+|.+.+..+..++. .+++|++|+|+.|.+++. ++..+..+++|+.|++++|.+++..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 3567777777777665443333331 356777777777777653 2233345677777777777776543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=6.3e-10 Score=105.34 Aligned_cols=198 Identities=16% Similarity=0.155 Sum_probs=131.7
Q ss_pred CCcEEEecCCCCcc-c-------cCccccCCCCCCEEEccCCccc---------ccCCccccCCCCCcEEEcCCCcCCcc
Q 048551 69 SLRFINIADNGVQG-E-------IPNELGNLVRLEKLILANNSFS---------GTIPTNLSLRSKLMLFFANRNILAGE 131 (409)
Q Consensus 69 ~l~~L~L~~n~l~~-~-------~p~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~ 131 (409)
+++.|.+......+ . +..+...+++|+.|.+...... +.+...+..+++|+.|++++|.-. .
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~ 186 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-S 186 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-B
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-e
Confidence 67788877665442 1 2334566889999998765331 123344567899999999887311 2
Q ss_pred CCcccCCCCCCcEEEeecccccccCCcccc--CCCCCcEEeCCC--CCCCCC-----CCCCC--CCCCCCcEEEccCCcC
Q 048551 132 IPAEIGNLFKLEKLSFCVIKLTGQLPASIQ--NLSSHLEADSNR--NNFGGK-----IPESP--GQLRSLFYLNVGGNQF 200 (409)
Q Consensus 132 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~l~~--n~l~~~-----~~~~~--~~l~~L~~L~l~~n~l 200 (409)
++. +. +++|++|++..+.+.......+. .+++|+.|+|+. +...+. +...+ ..+++|++|++.+|.+
T Consensus 187 l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 187 IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264 (362)
T ss_dssp CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence 333 43 78999999998887654444444 789999999853 222111 11122 3579999999999998
Q ss_pred cccCc-c---cCCCCCCcEEEeecCcCcccCchHHh---hCCCccceeeccccccccccchhhhc-CCCCCEEEcccCc
Q 048551 201 SGMFL-P---VYNLSSLEMIYLHDNRLNGNLPPVIG---AKLPNLRKIVIALNNFTGPLPDSFSN-ASNRERLELSYNQ 271 (409)
Q Consensus 201 ~~~~~-~---~~~l~~L~~L~l~~n~l~~~~p~~~~---~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~ 271 (409)
..... . ...+++|+.|+++.|.+.+.-+..+. ..+++|+.|++++|.++...-..+.. + ...++++.++
T Consensus 265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 75332 1 23578999999999999854332332 14689999999999988655555544 3 4668888776
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.93 E-value=7.7e-08 Score=92.34 Aligned_cols=285 Identities=9% Similarity=0.020 Sum_probs=153.5
Q ss_pred ecCCCcEEEecCCC---CccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCC
Q 048551 66 TCASLRFINIADNG---VQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKL 142 (409)
Q Consensus 66 ~c~~l~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 142 (409)
.|.+|+.+.+..+. ++..-..+|..+.+|+.+.+..+ ++......|..+.+|+.+.+..+... .....|..+..|
T Consensus 85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~~~-I~~~~F~~c~~L 162 (394)
T 4gt6_A 85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGVTS-VADGMFSYCYSL 162 (394)
T ss_dssp TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTC
T ss_pred CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccceeee-ecccceeccccc
Confidence 46799999998764 55344567888999999888765 55455667889999999999755433 445668889999
Q ss_pred cEEEeecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCccc--------------C
Q 048551 143 EKLSFCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFLPV--------------Y 208 (409)
Q Consensus 143 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------------~ 208 (409)
+.+.+..+ ++......|. ...|+.+.+..+-.. .....|.++.+++......+........+ .
T Consensus 163 ~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (394)
T 4gt6_A 163 HTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYP 239 (394)
T ss_dssp CEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECC
T ss_pred ccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccceecccccccccccceeecccccccccccccc
Confidence 99998755 4434344454 367888888655332 44566777888887776554433221111 1
Q ss_pred CCCCCcEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCc
Q 048551 209 NLSSLEMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQ 287 (409)
Q Consensus 209 ~l~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~ 287 (409)
....+..+.+.. .++ .+....+..+..|+.+.+..+..+ .....|.+++.|+.+.+.. .++......|. -.+| +
T Consensus 240 ~~~~~~~~~ip~-~v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L-~ 314 (394)
T 4gt6_A 240 SQREDPAFKIPN-GVA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISL-K 314 (394)
T ss_dssp TTCCCSEEECCT-TEE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTC-C
T ss_pred cccccceEEcCC-cce-EcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCc-C
Confidence 112223333221 122 233333446677777777654333 4455677777787777742 33322111111 0011 2
Q ss_pred EEecccCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEe-eccceecCCC
Q 048551 288 RLNDDDQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNL-YNHFDGEVPT 366 (409)
Q Consensus 288 ~L~l~~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~n~l~~~~p~ 366 (409)
.+++..+ ++ .|... .|.++.+|+.+.+..+ ++..-..+|.++.+|+.+++ ++.... ..
T Consensus 315 ~i~lp~~-v~-------~I~~~----------aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~ 373 (394)
T 4gt6_A 315 SIDIPEG-IT-------QILDD----------AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NA 373 (394)
T ss_dssp EEECCTT-CC-------EECTT----------TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HT
T ss_pred EEEeCCc-cc-------EehHh----------HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hh
Confidence 2222111 00 11110 1555666677766543 54344556667777777777 433221 11
Q ss_pred CCCCCCCCeecccCC
Q 048551 367 KGVFNNKTRISLAGN 381 (409)
Q Consensus 367 ~~~~~~L~~L~l~~N 381 (409)
.....+|+.+.+..|
T Consensus 374 ~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 374 ISTDSGLQNLPVAPG 388 (394)
T ss_dssp CBCCCCC--------
T ss_pred hhccCCCCEEEeCCC
Confidence 123445555555433
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.63 E-value=7.3e-06 Score=77.91 Aligned_cols=283 Identities=11% Similarity=0.031 Sum_probs=158.8
Q ss_pred cCCCcEEEecCCCCccccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEE
Q 048551 67 CASLRFINIADNGVQGEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLS 146 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 146 (409)
+++++.+.+.. +++..-..+|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ ++..-..+|.. .+|+.+.
T Consensus 45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~ 119 (379)
T 4h09_A 45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFE 119 (379)
T ss_dssp GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEE
T ss_pred ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCccccc
Confidence 34788888864 466445567999999999999754 664556677776 6777777644 44233344554 4799998
Q ss_pred eecccccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-------------ccCCCCCC
Q 048551 147 FCVIKLTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-------------PVYNLSSL 213 (409)
Q Consensus 147 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~l~~L 213 (409)
+..+ ++......|.+. +++.+.+..+ ++......|..+.+++.+.+..+....... .+.....+
T Consensus 120 lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (379)
T 4h09_A 120 FPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG 196 (379)
T ss_dssp CCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred CCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence 8755 332333344443 5666655443 333445567777788877766543321110 22233444
Q ss_pred cEEEeecCcCcccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCccccchhhh-hcccCcEEecc
Q 048551 214 EMIYLHDNRLNGNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFRGKSIWRSA-ATSYSQRLNDD 292 (409)
Q Consensus 214 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-l~~l~~~L~l~ 292 (409)
..+.+....-. +....+....+++.+.+..+ ++......+.++..|+.+.+..+ ++......+. ...+ +.+.+.
T Consensus 197 ~~~~~~~~~~~--i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l-~~i~l~ 271 (379)
T 4h09_A 197 TEFTIPSTVKT--VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL-KTLNFY 271 (379)
T ss_dssp SEEECCTTCCE--ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC-CEEEEC
T ss_pred cccccccceeE--Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh-cccccc
Confidence 44444433221 22222225566777766544 33244455667777777776543 3222111111 0011 222221
Q ss_pred cCCccccccccccCChhccCCCCCCccccCCCCCCCEEECcCCccccccchhhhcCCCCcEEEeeccceecCCCC--CCC
Q 048551 293 DQNHHGRQQNICYLPTGISNLVNLDSLATDSLKSIEELDLSSNNLSGQLPRLLVNLSFLVLLNLYNHFDGEVPTK--GVF 370 (409)
Q Consensus 293 ~n~l~~~~~~l~~ip~~~~~l~~L~~L~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~n~l~~~~p~~--~~~ 370 (409)
.+ + ..++. -.|.++++|+.+.+.++.++......|.++.+|+.+.+.+++. .+... ..+
T Consensus 272 ~~-i-------~~i~~----------~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~-~I~~~aF~~C 332 (379)
T 4h09_A 272 AK-V-------KTVPY----------LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALK-TIQVYAFKNC 332 (379)
T ss_dssp CC-C-------SEECT----------TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTC
T ss_pred cc-c-------eeccc----------cccccccccccccccccccceehhhhhcCCCCCCEEEcCcccc-EEHHHHhhCC
Confidence 11 0 01211 1166778888888888888756667888888999988854454 33332 556
Q ss_pred CCCCeecccCC
Q 048551 371 NNKTRISLAGN 381 (409)
Q Consensus 371 ~~L~~L~l~~N 381 (409)
.+|+.+.+..+
T Consensus 333 ~~L~~i~ip~~ 343 (379)
T 4h09_A 333 KALSTISYPKS 343 (379)
T ss_dssp TTCCCCCCCTT
T ss_pred CCCCEEEECCc
Confidence 77888877544
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=2.2e-08 Score=85.55 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=28.2
Q ss_pred CCCCcEEEeeccccccc----CCccccCCCCCcEEeC--CCCCCCCCC----CCCCCCCCCCcEEEccCCcCc
Q 048551 139 LFKLEKLSFCVIKLTGQ----LPASIQNLSSHLEADS--NRNNFGGKI----PESPGQLRSLFYLNVGGNQFS 201 (409)
Q Consensus 139 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l--~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~ 201 (409)
.++|++|+|++|.+... +...+...+.|++|++ ++|.+.... ...+...++|++|++++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34455555555544432 2233444445555555 445544221 122223345566666655543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=1.8e-08 Score=86.02 Aligned_cols=88 Identities=13% Similarity=0.064 Sum_probs=46.7
Q ss_pred CCCCCCcEEEeeccccccc----CCccccCCCCCcEEeCCCCCCCCC----CCCCCCCCCCCcEEEc--cCCcCcccCc-
Q 048551 137 GNLFKLEKLSFCVIKLTGQ----LPASIQNLSSHLEADSNRNNFGGK----IPESPGQLRSLFYLNV--GGNQFSGMFL- 205 (409)
Q Consensus 137 ~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l--~~n~l~~~~~- 205 (409)
...++|++|+|++|.+... +...+...+.|++|++++|.+... +...+...++|++|++ ++|.+.....
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3344555555555555421 223344445666667766666532 2334445556666766 5666654321
Q ss_pred ----ccCCCCCCcEEEeecCcCc
Q 048551 206 ----PVYNLSSLEMIYLHDNRLN 224 (409)
Q Consensus 206 ----~~~~l~~L~~L~l~~n~l~ 224 (409)
.+...++|++|++++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 3334456666666666654
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.35 E-value=9.9e-08 Score=85.89 Aligned_cols=64 Identities=25% Similarity=0.254 Sum_probs=30.0
Q ss_pred CCCCCCEEEccCCcccc--cCCccccCCCCCcEEEcCCCcCCccCCcccCCCC--CCcEEEeeccccccc
Q 048551 90 NLVRLEKLILANNSFSG--TIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLF--KLEKLSFCVIKLTGQ 155 (409)
Q Consensus 90 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~--~L~~L~L~~n~l~~~ 155 (409)
++++|++|+|++|+|++ .+|..+..+++|++|+|++|++++. ..+..+. +|++|++++|.+.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence 34555555555555554 2333444555555555555555532 1122222 455555555555443
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=1.4e-06 Score=78.32 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=61.5
Q ss_pred cCCCcEEEecCCCCcc--ccCccccCCCCCCEEEccCCcccccCCccccCCC--CCcEEEcCCCcCCccCCc-------c
Q 048551 67 CASLRFINIADNGVQG--EIPNELGNLVRLEKLILANNSFSGTIPTNLSLRS--KLMLFFANRNILAGEIPA-------E 135 (409)
Q Consensus 67 c~~l~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p~-------~ 135 (409)
+.+|+.|+|++|+|++ .+|..+..+++|++|+|++|.|++. ..+..++ +|++|++++|.+.+.+|. .
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4589999999999997 4667778999999999999999965 3344444 999999999999876662 2
Q ss_pred cCCCCCCcEEE
Q 048551 136 IGNLFKLEKLS 146 (409)
Q Consensus 136 ~~~l~~L~~L~ 146 (409)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45566666654
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.03 E-value=9.3e-05 Score=70.20 Aligned_cols=181 Identities=12% Similarity=0.022 Sum_probs=116.7
Q ss_pred cCccccCCCCCCEEEccCCcccc------------cCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeeccc
Q 048551 84 IPNELGNLVRLEKLILANNSFSG------------TIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVIK 151 (409)
Q Consensus 84 ~p~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 151 (409)
-...|..+..++...+..+.... .....+.....+..+.+...... .....+....+|+.+.+..+
T Consensus 150 ~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~- 227 (379)
T 4h09_A 150 KDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG- 227 (379)
T ss_dssp CSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-
T ss_pred ccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeE-Eeecccccccccceeeeccc-
Confidence 34578888888888877653321 11223344555666655444322 34445666777888777544
Q ss_pred ccccCCccccCCCCCcEEeCCCCCCCCCCCCCCCCCCCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCcCcccCchH
Q 048551 152 LTGQLPASIQNLSSHLEADSNRNNFGGKIPESPGQLRSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNRLNGNLPPV 230 (409)
Q Consensus 152 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~ 230 (409)
++......+.++..|+.+.+..+ ++......|.++.+|+.+.+..+ +..... .|.++.+|+.+.+.++.++ .++..
T Consensus 228 ~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~ 304 (379)
T 4h09_A 228 VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPR 304 (379)
T ss_dssp CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTT
T ss_pred eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhh
Confidence 33344556777788888887655 44455566777888888887654 444444 6777888888888877777 66666
Q ss_pred HhhCCCccceeeccccccccccchhhhcCCCCCEEEcccC
Q 048551 231 IGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYN 270 (409)
Q Consensus 231 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N 270 (409)
.+.++.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+
T Consensus 305 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 305 VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 5557788888888644 55444567888888888877543
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=1.6e-06 Score=72.49 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=14.3
Q ss_pred CCcEEEecCCCCccccCccccCCCCCCEEEccCC
Q 048551 69 SLRFINIADNGVQGEIPNELGNLVRLEKLILANN 102 (409)
Q Consensus 69 ~l~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 102 (409)
.|+.||++++.+++.--..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444444444444332233344444444444444
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.91 E-value=1.3e-05 Score=67.00 Aligned_cols=86 Identities=13% Similarity=0.049 Sum_probs=61.0
Q ss_pred CCCcEEEccCCcCcccCc-ccCCCCCCcEEEeecCc-CcccCchHHhhCC----Cccceeeccccc-cccccchhhhcCC
Q 048551 188 RSLFYLNVGGNQFSGMFL-PVYNLSSLEMIYLHDNR-LNGNLPPVIGAKL----PNLRKIVIALNN-FTGPLPDSFSNAS 260 (409)
Q Consensus 188 ~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~-l~~~~p~~~~~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~ 260 (409)
.+|++|+++++.++...- .+..+++|+.|++++|. +++.--..+. .+ ++|++|++++|. +++..-..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~-~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS-QLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHH-TCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHH-hcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 467888888887765433 56778888888888885 6543333444 33 468999999874 7765556678889
Q ss_pred CCCEEEcccCc-Ccc
Q 048551 261 NRERLELSYNQ-FRG 274 (409)
Q Consensus 261 ~L~~L~Ls~N~-l~~ 274 (409)
+|+.|+++++. +++
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 99999998875 443
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.10 E-value=0.00014 Score=62.00 Aligned_cols=82 Identities=20% Similarity=0.150 Sum_probs=45.2
Q ss_pred CCcEEEecCC-CCccc----cCccccCCCCCCEEEccCCcccccC----CccccCCCCCcEEEcCCCcCCcc----CCcc
Q 048551 69 SLRFINIADN-GVQGE----IPNELGNLVRLEKLILANNSFSGTI----PTNLSLRSKLMLFFANRNILAGE----IPAE 135 (409)
Q Consensus 69 ~l~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~----~p~~ 135 (409)
.+++|+|+++ +|.+. +-+.+..-+.|+.|+|++|.|.+.- ...+..-+.|++|+|++|.|.+. +-+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 5677777764 55432 3344555566777777777766432 22333456666666666666532 1223
Q ss_pred cCCCCCCcEEEeecc
Q 048551 136 IGNLFKLEKLSFCVI 150 (409)
Q Consensus 136 ~~~l~~L~~L~L~~n 150 (409)
+..-+.|++|+|++|
T Consensus 122 L~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTTTCCCSEEECCCC
T ss_pred HhhCCceeEEECCCC
Confidence 344445666666543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.89 E-value=0.0017 Score=55.18 Aligned_cols=66 Identities=12% Similarity=0.181 Sum_probs=31.5
Q ss_pred CCCCCcEEEeecC-cCccc----CchHHhhCCCccceeeccccccccc----cchhhhcCCCCCEEEcccCcCccc
Q 048551 209 NLSSLEMIYLHDN-RLNGN----LPPVIGAKLPNLRKIVIALNNFTGP----LPDSFSNASNRERLELSYNQFRGK 275 (409)
Q Consensus 209 ~l~~L~~L~l~~n-~l~~~----~p~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~ 275 (409)
+-+.|++|++++| .+... +...+. .-+.|+.|+|++|++.+. +.+.+..-+.|++|+|++|.|.+.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~-~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAAC-NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHT-TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHh-hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 3445555555553 44311 222222 334556666666655532 223334445666666666666543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.85 E-value=0.0024 Score=50.57 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=39.7
Q ss_pred cEEEecCCCCc-cccCccccCCCCCCEEEccCCcccccCCccccCCCCCcEEEcCCCcCC
Q 048551 71 RFINIADNGVQ-GEIPNELGNLVRLEKLILANNSFSGTIPTNLSLRSKLMLFFANRNILA 129 (409)
Q Consensus 71 ~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 129 (409)
+.++.++++++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777888876 35665443 46888888888888555566677777777777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.56 E-value=0.0023 Score=50.66 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=33.5
Q ss_pred EEEeecCcCc-ccCchHHhhCCCccceeeccccccccccchhhhcCCCCCEEEcccCcCc
Q 048551 215 MIYLHDNRLN-GNLPPVIGAKLPNLRKIVIALNNFTGPLPDSFSNASNRERLELSYNQFR 273 (409)
Q Consensus 215 ~L~l~~n~l~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 273 (409)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC---TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC---cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555553 24454332 45667777777776555555666777777777777664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.74 E-value=42 Score=24.32 Aligned_cols=14 Identities=0% Similarity=0.081 Sum_probs=5.6
Q ss_pred cccCCCCCCEEEcc
Q 048551 87 ELGNLVRLEKLILA 100 (409)
Q Consensus 87 ~~~~l~~L~~L~L~ 100 (409)
+|.+++.|+.+.|.
T Consensus 15 aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 15 LFAGNTVIREITVQ 28 (100)
T ss_dssp TTTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcC
Confidence 33444444444433
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=37.20 E-value=86 Score=22.59 Aligned_cols=48 Identities=13% Similarity=-0.001 Sum_probs=32.4
Q ss_pred CcccccCCccccCCCCCcEEEcCCCcCCccCCcccCCCCCCcEEEeecc
Q 048551 102 NSFSGTIPTNLSLRSKLMLFFANRNILAGEIPAEIGNLFKLEKLSFCVI 150 (409)
Q Consensus 102 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~L~~n 150 (409)
..++..-...|.++..|+.+.+-.+ ++..-..+|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455455567788888888888765 33244556788888888887654
Done!