BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048554
         (82 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
           OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
          Length = 153

 Score = 35.0 bits (79), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 22/98 (22%)

Query: 4   VDNNDIDMAVQKVTLMSWEDQKKVL-KIVKKTGRSVKLWPY-----SYNPNGDFGYYPQS 57
           V +  ++    KVT++ + D  KV+ ++  +TG+ V+LWPY       +P     Y  ++
Sbjct: 53  VSSVTLEPKAHKVTVVGYVDPNKVVARMSHRTGKKVELWPYVPYDVVAHPYAAGVYDKKA 112

Query: 58  PYSHI-------FDELTDA---------MFSDENPHAC 79
           P  ++         +L  A          FSDENP AC
Sbjct: 113 PSGYVRRVDDPGVSQLARASSTEVRYTTAFSDENPAAC 150


>sp|Q929Z2|NADB_LISIN L-aspartate oxidase OS=Listeria innocua serovar 6a (strain CLIP
           11262) GN=nadB PE=3 SV=1
          Length = 484

 Score = 29.3 bits (64), Expect = 6.7,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 20/25 (80%)

Query: 14  QKVTLMSWEDQKKVLKIVKKTGRSV 38
           +K+T ++W++QK  ++I+K  GR++
Sbjct: 137 EKLTKVNWQEQKMAIEIIKHDGRAI 161


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.134    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,465,474
Number of Sequences: 539616
Number of extensions: 1179807
Number of successful extensions: 2926
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2921
Number of HSP's gapped (non-prelim): 6
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)