Query 048554
Match_columns 82
No_of_seqs 105 out of 618
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 10:35:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1603 Copper chaperone [Inor 99.2 2.4E-11 5.2E-16 74.1 6.0 44 1-44 29-73 (73)
2 KOG4656 Copper chaperone for s 98.2 3.6E-06 7.9E-11 61.8 4.9 42 2-43 32-73 (247)
3 PF00403 HMA: Heavy-metal-asso 98.1 8.1E-06 1.8E-10 47.1 5.0 37 1-37 23-62 (62)
4 COG2608 CopZ Copper chaperone 96.8 0.0037 8E-08 37.7 5.0 41 1-41 27-70 (71)
5 PLN02957 copper, zinc superoxi 95.4 0.079 1.7E-06 38.5 6.7 43 1-43 30-72 (238)
6 COG1888 Uncharacterized protei 85.7 1.7 3.7E-05 28.3 3.9 29 10-38 47-76 (97)
7 PF02680 DUF211: Uncharacteriz 81.4 1.3 2.8E-05 28.8 2.1 37 2-38 30-74 (95)
8 PRK10671 copA copper exporting 79.2 3.6 7.8E-05 34.7 4.5 39 1-41 28-66 (834)
9 PF04972 BON: BON domain; Int 71.1 4.3 9.4E-05 22.9 2.2 27 6-32 18-44 (64)
10 PF02107 FlgH: Flagellar L-rin 68.7 3.6 7.9E-05 28.9 1.8 27 2-28 112-138 (179)
11 cd06167 LabA_like LabA_like pr 68.2 9.3 0.0002 24.7 3.6 31 14-44 102-132 (149)
12 PF13732 DUF4162: Domain of un 66.9 15 0.00033 21.5 4.1 36 1-36 29-65 (84)
13 PF05309 TraE: TraE protein; 58.2 13 0.00028 25.8 3.0 19 4-22 130-148 (187)
14 COG4004 Uncharacterized protei 57.4 23 0.0005 23.1 3.8 20 1-20 39-58 (96)
15 PF01936 NYN: NYN domain; Int 55.3 14 0.0003 23.4 2.6 30 13-42 97-126 (146)
16 PF04312 DUF460: Protein of un 53.4 41 0.00088 23.2 4.7 35 8-42 47-83 (138)
17 TIGR02761 TraE_TIGR type IV co 53.3 16 0.00034 25.5 2.8 19 4-22 130-148 (181)
18 PF01565 FAD_binding_4: FAD bi 53.2 28 0.00061 22.1 3.8 35 7-41 57-91 (139)
19 PF06180 CbiK: Cobalt chelatas 52.7 8.9 0.00019 28.6 1.5 28 16-43 177-205 (262)
20 PF04459 DUF512: Protein of un 51.8 28 0.00062 25.0 4.0 34 10-43 135-169 (204)
21 PF00352 TBP: Transcription fa 50.5 35 0.00077 20.7 3.8 22 12-33 56-77 (86)
22 PRK13726 conjugal transfer pil 50.0 19 0.00042 25.6 2.8 19 4-22 130-148 (188)
23 PRK11023 outer membrane lipopr 49.4 19 0.00041 25.3 2.7 33 6-38 69-101 (191)
24 PF07744 SPOC: SPOC domain; I 48.1 31 0.00067 21.5 3.3 23 13-35 38-60 (119)
25 PRK12698 flgH flagellar basal 47.0 17 0.00036 26.7 2.2 27 2-28 155-181 (224)
26 PF11150 DUF2927: Protein of u 45.4 11 0.00024 27.3 1.0 13 66-78 167-179 (213)
27 PF14847 Ras_bdg_2: Ras-bindin 44.5 16 0.00035 23.8 1.6 27 12-38 11-38 (105)
28 PRK11023 outer membrane lipopr 44.4 44 0.00095 23.4 3.9 25 5-29 145-169 (191)
29 PRK12788 flgH flagellar basal 44.2 17 0.00036 27.0 1.8 27 2-28 166-192 (234)
30 PF13098 Thioredoxin_2: Thiore 43.8 35 0.00076 20.6 3.0 23 9-31 89-112 (112)
31 PRK12697 flgH flagellar basal 42.4 19 0.0004 26.6 1.8 27 2-28 158-184 (226)
32 PRK12407 flgH flagellar basal 42.0 19 0.00041 26.4 1.8 27 2-28 152-178 (221)
33 PRK12701 flgH flagellar basal 41.7 20 0.00042 26.4 1.9 27 2-28 161-187 (230)
34 PRK11198 LysM domain/BON super 41.4 36 0.00079 22.9 3.0 35 4-38 42-76 (147)
35 PF07021 MetW: Methionine bios 41.4 23 0.00049 25.6 2.1 19 22-40 89-107 (193)
36 cd06471 ACD_LpsHSP_like Group 41.4 21 0.00046 21.6 1.7 23 2-24 19-43 (93)
37 PRK00249 flgH flagellar basal 41.1 23 0.00051 25.8 2.2 27 2-28 154-180 (222)
38 PF08478 POTRA_1: POTRA domain 40.7 28 0.0006 19.6 2.1 24 14-37 4-30 (69)
39 cd00298 ACD_sHsps_p23-like Thi 40.2 22 0.00049 19.3 1.6 22 2-23 15-38 (80)
40 cd02991 UAS_ETEA UAS family, E 39.9 57 0.0012 21.0 3.7 27 9-35 83-113 (116)
41 PRK12696 flgH flagellar basal 38.7 25 0.00054 25.9 2.0 27 2-28 168-194 (236)
42 cd06464 ACD_sHsps-like Alpha-c 38.5 24 0.00052 20.3 1.6 24 2-25 16-41 (88)
43 PF03537 Glyco_hydro_114: Glyc 37.5 61 0.0013 19.3 3.3 28 3-39 26-53 (74)
44 PF12182 DUF3642: Bacterial li 37.4 46 0.001 20.8 2.8 15 4-18 42-56 (79)
45 PRK10671 copA copper exporting 37.2 69 0.0015 27.1 4.7 40 2-41 125-164 (834)
46 PRK12700 flgH flagellar basal 36.8 26 0.00057 25.8 1.9 27 2-28 162-188 (230)
47 PRK12699 flgH flagellar basal 36.6 29 0.00063 25.9 2.1 27 2-28 179-205 (246)
48 PRK00051 hisI phosphoribosyl-A 35.9 1.4E+02 0.003 20.2 5.3 38 4-43 15-52 (125)
49 TIGR00288 conserved hypothetic 35.9 59 0.0013 22.7 3.5 31 13-43 107-137 (160)
50 PF05193 Peptidase_M16_C: Pept 35.8 54 0.0012 20.5 3.1 20 14-33 20-39 (184)
51 smart00653 eIF2B_5 domain pres 35.5 82 0.0018 20.6 3.9 34 8-42 51-84 (110)
52 PF00013 KH_1: KH domain syndr 35.3 80 0.0017 17.3 3.7 24 7-32 33-58 (60)
53 cd02958 UAS UAS family; UAS is 34.7 88 0.0019 19.3 3.9 27 8-34 82-110 (114)
54 COG1908 FrhD Coenzyme F420-red 34.7 33 0.00071 23.5 2.0 26 15-41 34-59 (132)
55 COG2217 ZntA Cation transport 34.3 87 0.0019 26.7 4.8 40 1-40 26-69 (713)
56 PF10656 DUF2483: Hypothetical 32.5 17 0.00036 22.6 0.2 20 1-20 41-63 (72)
57 TIGR00735 hisF imidazoleglycer 32.2 1.2E+02 0.0027 21.7 4.8 33 7-40 8-48 (254)
58 PF13738 Pyr_redox_3: Pyridine 31.0 52 0.0011 21.7 2.5 32 10-41 164-196 (203)
59 PF07338 DUF1471: Protein of u 30.8 86 0.0019 17.9 3.1 19 14-32 6-25 (56)
60 PF13216 DUF4024: Protein of u 30.3 20 0.00042 19.0 0.2 10 68-77 9-18 (35)
61 COG1094 Predicted RNA-binding 30.1 1E+02 0.0022 22.4 3.9 26 6-31 40-68 (194)
62 TIGR03279 cyano_FeS_chp putati 29.5 83 0.0018 25.4 3.7 33 10-43 357-391 (433)
63 PF01712 dNK: Deoxynucleoside 28.8 34 0.00074 22.6 1.3 19 21-39 75-93 (146)
64 PF03958 Secretin_N: Bacterial 28.1 1.3E+02 0.0027 17.3 3.7 22 6-27 47-68 (82)
65 PF13405 EF-hand_6: EF-hand do 27.7 51 0.0011 15.9 1.6 17 19-35 14-31 (31)
66 COG0139 HisI Phosphoribosyl-AM 27.6 1.9E+02 0.0041 19.3 5.2 39 4-44 19-57 (111)
67 PF14605 Nup35_RRM_2: Nup53/35 27.3 1.2E+02 0.0026 16.9 3.4 27 14-40 2-30 (53)
68 cd06475 ACD_HspB1_like Alpha c 27.1 45 0.00099 20.3 1.5 18 5-22 24-41 (86)
69 PF01873 eIF-5_eIF-2B: Domain 26.9 93 0.002 20.7 3.1 27 7-34 63-89 (125)
70 COG2072 TrkA Predicted flavopr 26.8 1.1E+02 0.0023 24.1 3.9 32 9-40 171-203 (443)
71 TIGR01676 GLDHase galactonolac 26.7 1E+02 0.0022 25.5 3.8 32 7-38 117-148 (541)
72 cd06476 ACD_HspB2_like Alpha c 26.6 42 0.0009 20.5 1.3 19 5-23 21-39 (83)
73 cd00652 TBP_TLF TATA box bindi 26.5 97 0.0021 21.5 3.3 23 12-34 146-168 (174)
74 PF14611 SLS: Mitochondrial in 26.2 1E+02 0.0023 21.3 3.4 34 5-38 57-91 (210)
75 PRK10568 periplasmic protein; 25.8 98 0.0021 21.8 3.2 26 6-31 79-104 (203)
76 cd06477 ACD_HspB3_Like Alpha c 25.8 44 0.00095 20.6 1.3 20 5-24 21-40 (83)
77 cd04518 TBP_archaea archaeal T 25.7 1E+02 0.0022 21.5 3.3 24 11-34 144-167 (174)
78 PF08747 DUF1788: Domain of un 25.7 2.1E+02 0.0045 19.0 4.7 33 12-44 61-100 (126)
79 cd06481 ACD_HspB9_like Alpha c 25.2 47 0.001 20.3 1.3 18 5-22 21-38 (87)
80 PF13833 EF-hand_8: EF-hand do 25.2 52 0.0011 17.5 1.4 19 19-37 2-20 (54)
81 COG1432 Uncharacterized conser 25.1 99 0.0021 21.4 3.1 32 12-43 111-142 (181)
82 PF11495 Regulator_TrmB: Archa 24.5 71 0.0015 22.7 2.3 22 1-22 197-218 (233)
83 cd08032 LARP_7 La RNA-binding 24.4 24 0.00053 22.0 -0.1 8 69-76 15-22 (82)
84 cd04517 TLF TBP-like factors ( 24.3 1.2E+02 0.0026 21.2 3.4 22 12-33 146-167 (174)
85 cd06478 ACD_HspB4-5-6 Alpha-cr 24.2 58 0.0013 19.6 1.6 17 5-21 21-37 (83)
86 PF08142 AARP2CN: AARP2CN (NUC 24.1 1.1E+02 0.0023 18.9 2.8 8 15-22 47-54 (85)
87 cd06479 ACD_HspB7_like Alpha c 23.6 52 0.0011 20.1 1.3 18 5-22 22-39 (81)
88 COG1765 Predicted redox protei 22.9 1.1E+02 0.0024 20.2 2.9 23 15-37 93-115 (137)
89 PF02983 Pro_Al_protease: Alph 22.9 1.5E+02 0.0033 17.1 3.2 19 3-21 24-42 (62)
90 PRK12281 rplX 50S ribosomal pr 22.8 80 0.0017 19.3 2.1 15 7-21 28-42 (76)
91 cd06497 ACD_alphaA-crystallin_ 22.5 58 0.0012 19.9 1.4 18 5-22 24-41 (86)
92 PLN02465 L-galactono-1,4-lacto 22.2 1.5E+02 0.0032 24.7 4.0 33 7-39 152-184 (573)
93 cd04516 TBP_eukaryotes eukaryo 22.1 1.4E+02 0.003 20.9 3.4 22 12-33 145-166 (174)
94 PF12971 NAGLU_N: Alpha-N-acet 22.0 1.1E+02 0.0023 18.8 2.6 19 3-21 30-49 (86)
95 PHA00515 hypothetical protein 21.7 65 0.0014 18.4 1.4 19 24-42 23-41 (53)
96 COG0022 AcoB Pyruvate/2-oxoglu 21.7 92 0.002 24.4 2.6 24 22-45 240-263 (324)
97 cd02394 vigilin_like_KH K homo 21.6 1.6E+02 0.0034 16.2 3.8 18 13-32 42-59 (62)
98 PRK00394 transcription factor; 21.6 1.4E+02 0.003 20.9 3.3 22 12-33 146-167 (179)
99 TIGR01679 bact_FAD_ox FAD-link 21.5 1.5E+02 0.0033 23.1 3.8 34 8-41 65-98 (419)
100 PRK06063 DNA polymerase III su 21.4 1.5E+02 0.0032 22.3 3.7 27 12-38 234-262 (313)
101 PF12392 DUF3656: Collagenase 21.4 1.9E+02 0.0042 18.3 3.8 29 10-38 44-82 (122)
102 cd06526 metazoan_ACD Alpha-cry 21.4 55 0.0012 19.4 1.1 20 5-24 21-40 (83)
103 cd06595 GH31_xylosidase_XylS-l 21.2 1.1E+02 0.0024 22.5 2.9 24 22-45 74-97 (292)
104 cd06498 ACD_alphaB-crystallin_ 21.1 64 0.0014 19.6 1.4 17 5-21 21-37 (84)
105 TIGR01677 pln_FAD_oxido plant- 20.8 1.6E+02 0.0035 24.2 4.0 35 7-41 92-126 (557)
106 COG0071 IbpA Molecular chapero 20.8 66 0.0014 21.3 1.5 20 5-24 64-83 (146)
107 KOG2586 Pyridoxamine-phosphate 20.7 43 0.00093 24.9 0.6 9 73-81 101-109 (228)
108 PRK01191 rpl24p 50S ribosomal 20.5 1E+02 0.0023 20.7 2.4 15 7-21 67-81 (120)
109 KOG0207 Cation transport ATPas 20.4 1.8E+02 0.0039 26.0 4.3 42 2-43 20-63 (951)
110 PRK03988 translation initiatio 20.4 1.7E+02 0.0036 19.9 3.4 32 12-43 76-107 (138)
111 cd06482 ACD_HspB10 Alpha cryst 20.3 63 0.0014 20.1 1.2 20 5-24 22-41 (87)
112 cd06480 ACD_HspB8_like Alpha-c 20.3 60 0.0013 20.4 1.2 19 5-23 29-47 (91)
113 KOG0207 Cation transport ATPas 20.0 2.5E+02 0.0053 25.2 5.0 43 1-43 171-216 (951)
No 1
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.24 E-value=2.4e-11 Score=74.10 Aligned_cols=44 Identities=41% Similarity=0.574 Sum_probs=40.4
Q ss_pred CCCeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhC-CceEEccCC
Q 048554 1 FIEVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTG-RSVKLWPYS 44 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktg-K~a~~~~~p 44 (82)
++||+++.+|+++|+|||+|.+||..|+++|+|+| +++++|..|
T Consensus 29 ~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~~~p 73 (73)
T KOG1603|consen 29 LKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELWKVP 73 (73)
T ss_pred cCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEecCC
Confidence 58999999999999999999999999999999877 899998543
No 2
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.15 E-value=3.6e-06 Score=61.85 Aligned_cols=42 Identities=17% Similarity=0.249 Sum_probs=39.8
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEccC
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLWPY 43 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~~ 43 (82)
+||++|++|+++|.|.|.+++.++++..+|+.|||+|.|...
T Consensus 32 ~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~ 73 (247)
T KOG4656|consen 32 PGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGA 73 (247)
T ss_pred CCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecC
Confidence 688899999999999999999999999999999999999754
No 3
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=98.12 E-value=8.1e-06 Score=47.07 Aligned_cols=37 Identities=22% Similarity=0.362 Sum_probs=33.1
Q ss_pred CCCeeEEEEeCCCCeEEEEeecC---HHHHHHHHHHhCCc
Q 048554 1 FIEVDNNDIDMAVQKVTLMSWED---QKKVLKIVKKTGRS 37 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~vd---p~~vl~~l~ktgK~ 37 (82)
++||+++++|+..++|+|++.-+ +++|.++|+++|.+
T Consensus 23 ~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 23 LPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp STTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 47999999999999999999844 59999999999963
No 4
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.0037 Score=37.67 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=34.6
Q ss_pred CCCeeEEEEeCCC--CeEEEEe-ecCHHHHHHHHHHhCCceEEc
Q 048554 1 FIEVDNNDIDMAV--QKVTLMS-WEDQKKVLKIVKKTGRSVKLW 41 (82)
Q Consensus 1 ~~GV~~v~vD~~~--qkVtV~G-~vdp~~vl~~l~ktgK~a~~~ 41 (82)
.+||.+|++|++. ..|++.+ .++.++|+++|..+|-.+..+
T Consensus 27 v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~~ 70 (71)
T COG2608 27 VDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEEI 70 (71)
T ss_pred CCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeeec
Confidence 3699999999999 5666667 699999999999999877654
No 5
>PLN02957 copper, zinc superoxide dismutase
Probab=95.42 E-value=0.079 Score=38.52 Aligned_cols=43 Identities=21% Similarity=0.296 Sum_probs=39.5
Q ss_pred CCCeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEccC
Q 048554 1 FIEVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLWPY 43 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~~ 43 (82)
.+||.++.+|+..++++|.+.+++..+++.|++.|..+++++.
T Consensus 30 ~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~ 72 (238)
T PLN02957 30 LEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQ 72 (238)
T ss_pred CCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecC
Confidence 3689999999999999999889999999999999999998876
No 6
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.68 E-value=1.7 Score=28.33 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=24.3
Q ss_pred eCCCCeEEEEee-cCHHHHHHHHHHhCCce
Q 048554 10 DMAVQKVTLMSW-EDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 10 D~~~qkVtV~G~-vdp~~vl~~l~ktgK~a 38 (82)
+.++=++||.|. +|-++|.+.|.+.|-..
T Consensus 47 et~~~~itIeG~~ldydei~~~iE~~Gg~I 76 (97)
T COG1888 47 ETENLKITIEGTNLDYDEIEEVIEELGGAI 76 (97)
T ss_pred hhcceEEEEEcCCCCHHHHHHHHHHcCCee
Confidence 445669999997 99999999999998544
No 7
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=81.41 E-value=1.3 Score=28.82 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=25.8
Q ss_pred CCeeEEEE-----eCCCC--eEEEEee-cCHHHHHHHHHHhCCce
Q 048554 2 IEVDNNDI-----DMAVQ--KVTLMSW-EDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 2 ~GV~~v~v-----D~~~q--kVtV~G~-vdp~~vl~~l~ktgK~a 38 (82)
+||+.|.+ |.+.+ ++||.|. +|.++|.++|++.|-..
T Consensus 30 ~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~I 74 (95)
T PF02680_consen 30 EGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVI 74 (95)
T ss_dssp TTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EE
T ss_pred CCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeE
Confidence 46666544 44443 8889998 99999999999998543
No 8
>PRK10671 copA copper exporting ATPase; Provisional
Probab=79.20 E-value=3.6 Score=34.66 Aligned_cols=39 Identities=10% Similarity=0.275 Sum_probs=34.2
Q ss_pred CCCeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEc
Q 048554 1 FIEVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLW 41 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~ 41 (82)
.+||+++++|+ ++.+|++..++..+.+.+++.|..+++.
T Consensus 28 ~~gv~~v~v~~--~~~~v~~~~~~~~i~~~i~~~Gy~~~~~ 66 (834)
T PRK10671 28 RPDVEQADVSI--TEAHVTGTASAEALIETIKQAGYDASVS 66 (834)
T ss_pred CCCcceEEEee--eEEEEEecCCHHHHHHHHHhcCCccccc
Confidence 37999999999 4677788899999999999999999875
No 9
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=71.13 E-value=4.3 Score=22.86 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=21.2
Q ss_pred EEEEeCCCCeEEEEeecCHHHHHHHHH
Q 048554 6 NNDIDMAVQKVTLMSWEDQKKVLKIVK 32 (82)
Q Consensus 6 ~v~vD~~~qkVtV~G~vdp~~vl~~l~ 32 (82)
.+.+...++.|+++|.++-..-.+++.
T Consensus 18 ~i~v~v~~g~v~L~G~v~s~~~~~~a~ 44 (64)
T PF04972_consen 18 NISVSVENGVVTLSGEVPSQEQRDAAE 44 (64)
T ss_dssp TEEEEEECTEEEEEEEESSCHHHHHHH
T ss_pred eEEEEEECCEEEEEeeCcHHHHHHhHH
Confidence 578888899999999997666665553
No 10
>PF02107 FlgH: Flagellar L-ring protein; InterPro: IPR000527 The flgH, flgI and fliF genes of Salmonella typhimurium encode the major proteins for the L, P and M rings of the flagellar basal body []. In fact, the basal body consists of four rings (L,P,S and M) surrounding the flagellar rod, which is believed to transmit motor rotation to the filament []. The M ring is integral to the inner membrane of the cell, and may be connected to the rod via the S (supramembrane) ring, which lies just distal to it. The L and P rings reside in the outer membrane and periplasmic space, respectively. FlgH and FlgI, which are exported across the cell membrane to their destinations in the outer membrane and periplasmic space, have typical N-terminal cleaved signal-peptide sequences. FlgH is predicted to have an extensive beta-sheet structure, in keeping with other outer membrane proteins [].; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0009427 bacterial-type flagellum basal body, distal rod, L ring
Probab=68.75 E-value=3.6 Score=28.85 Aligned_cols=27 Identities=7% Similarity=-0.050 Sum_probs=24.5
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHH
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVL 28 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl 28 (82)
+|=..+.++-+.|.++++|.|.|++|-
T Consensus 112 ~G~k~i~vn~e~~~i~lsGiVRp~DI~ 138 (179)
T PF02107_consen 112 EGEKQIRVNGEEQYIRLSGIVRPEDID 138 (179)
T ss_pred EEEEEEEECCCEEEEEEEEEECHHHCC
Confidence 567889999999999999999999985
No 11
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=68.18 E-value=9.3 Score=24.70 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=27.2
Q ss_pred CeEEEEeecCHHHHHHHHHHhCCceEEccCC
Q 048554 14 QKVTLMSWEDQKKVLKIVKKTGRSVKLWPYS 44 (82)
Q Consensus 14 qkVtV~G~vdp~~vl~~l~ktgK~a~~~~~p 44 (82)
.-|.|+|.-|-.-+++.|++.|+++.++..+
T Consensus 102 ~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 102 TIVLVSGDSDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred EEEEEECCccHHHHHHHHHHcCCEEEEEccC
Confidence 4577899999999999999999999998664
No 12
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=66.93 E-value=15 Score=21.55 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=28.7
Q ss_pred CCCeeEEEEeCCC-CeEEEEeecCHHHHHHHHHHhCC
Q 048554 1 FIEVDNNDIDMAV-QKVTLMSWEDQKKVLKIVKKTGR 36 (82)
Q Consensus 1 ~~GV~~v~vD~~~-qkVtV~G~vdp~~vl~~l~ktgK 36 (82)
++||.++..+-.. -.+.+....++.+|++.|...|-
T Consensus 29 ~~~v~~v~~~~~~~~~i~l~~~~~~~~ll~~l~~~g~ 65 (84)
T PF13732_consen 29 LPGVESVEQDGDGKLRIKLEDEETANELLQELIEKGI 65 (84)
T ss_pred CCCeEEEEEeCCcEEEEEECCcccHHHHHHHHHhCCC
Confidence 3688888876544 47777888899999999998886
No 13
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=58.17 E-value=13 Score=25.77 Aligned_cols=19 Identities=11% Similarity=0.001 Sum_probs=16.8
Q ss_pred eeEEEEeCCCCeEEEEeec
Q 048554 4 VDNNDIDMAVQKVTLMSWE 22 (82)
Q Consensus 4 V~~v~vD~~~qkVtV~G~v 22 (82)
++++++|.+.++|.|+|.+
T Consensus 130 ~~~i~~d~~~~~V~V~G~l 148 (187)
T PF05309_consen 130 PKSIEVDPETLTVFVTGTL 148 (187)
T ss_pred EeEEEEecCCCEEEEEEEE
Confidence 4688999999999999984
No 14
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.45 E-value=23 Score=23.06 Aligned_cols=20 Identities=10% Similarity=0.066 Sum_probs=18.7
Q ss_pred CCCeeEEEEeCCCCeEEEEe
Q 048554 1 FIEVDNNDIDMAVQKVTLMS 20 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G 20 (82)
++|++.|++.+++.++-|++
T Consensus 39 ~pgis~ieik~E~kkL~v~t 58 (96)
T COG4004 39 SPGISRIEIKPENKKLLVNT 58 (96)
T ss_pred cCCceEEEEecccceEEEec
Confidence 58999999999999999988
No 15
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=55.33 E-value=14 Score=23.41 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=21.6
Q ss_pred CCeEEEEeecCHHHHHHHHHHhCCceEEcc
Q 048554 13 VQKVTLMSWEDQKKVLKIVKKTGRSVKLWP 42 (82)
Q Consensus 13 ~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~ 42 (82)
..-|.|+|.-|=..++++|+..|+++.++.
T Consensus 97 d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 97 DTIVLVSGDSDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp SEEEEE---GGGHHHHHHHHHH--EEEEEE
T ss_pred CEEEEEECcHHHHHHHHHHHHcCCEEEEEE
Confidence 445778999999999999999999999886
No 16
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=53.39 E-value=41 Score=23.21 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=30.2
Q ss_pred EEeCCCCeEEEEee--cCHHHHHHHHHHhCCceEEcc
Q 048554 8 DIDMAVQKVTLMSW--EDQKKVLKIVKKTGRSVKLWP 42 (82)
Q Consensus 8 ~vD~~~qkVtV~G~--vdp~~vl~~l~ktgK~a~~~~ 42 (82)
-+|++.+-+.+... ++..+|++.|.+.||.+.+-.
T Consensus 47 ildL~G~~l~l~S~R~~~~~evi~~I~~~G~PviVAt 83 (138)
T PF04312_consen 47 ILDLDGELLDLKSSRNMSRSEVIEWISEYGKPVIVAT 83 (138)
T ss_pred EEecCCcEEEEEeecCCCHHHHHHHHHHcCCEEEEEe
Confidence 35888888999875 999999999999999988753
No 17
>TIGR02761 TraE_TIGR type IV conjugative transfer system protein TraE. TraE is a component of type IV secretion systems involved in conjugative transfer of plasmid DNA. The function of the TraE protein is unknown.
Probab=53.29 E-value=16 Score=25.50 Aligned_cols=19 Identities=5% Similarity=-0.076 Sum_probs=16.5
Q ss_pred eeEEEEeCCCCeEEEEeec
Q 048554 4 VDNNDIDMAVQKVTLMSWE 22 (82)
Q Consensus 4 V~~v~vD~~~qkVtV~G~v 22 (82)
+.++++|.+.++|.|+|++
T Consensus 130 ~~~i~v~~~~~~V~V~G~l 148 (181)
T TIGR02761 130 PKSVEWNPQEGTVKVRGHL 148 (181)
T ss_pred eeeEEEccCCCEEEEEEEE
Confidence 4678999999999999973
No 18
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=53.18 E-value=28 Score=22.11 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=30.1
Q ss_pred EEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEc
Q 048554 7 NDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLW 41 (82)
Q Consensus 7 v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~ 41 (82)
+++|.+.+.|+|.+-+.-.+|.+.|++.|...-+.
T Consensus 57 ~~id~~~~~v~v~aG~~~~~l~~~l~~~g~~~~~~ 91 (139)
T PF01565_consen 57 IEIDPENGTVTVGAGVTWGDLYEALAPRGLMLPVE 91 (139)
T ss_dssp EEEETTTTEEEEETTSBHHHHHHHHHHHTEEESSG
T ss_pred ccccccceeEEEeccccchhccccccccccccccc
Confidence 78899999999999999999999998888655443
No 19
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=52.71 E-value=8.9 Score=28.58 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=22.9
Q ss_pred EEEEeecCHHHHHHHHHHhC-CceEEccC
Q 048554 16 VTLMSWEDQKKVLKIVKKTG-RSVKLWPY 43 (82)
Q Consensus 16 VtV~G~vdp~~vl~~l~ktg-K~a~~~~~ 43 (82)
-||.|+-+-+.|+++|++.| |++.|.|.
T Consensus 177 gtvEG~P~~~~vi~~L~~~g~k~V~L~Pl 205 (262)
T PF06180_consen 177 GTVEGYPSLEDVIARLKKKGIKKVHLIPL 205 (262)
T ss_dssp EETTSSSBHHHHHHHHHHHT-SEEEEEEE
T ss_pred EEeCCCCCHHHHHHHHHhcCCCeEEEEec
Confidence 36678888999999998766 77888886
No 20
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=51.83 E-value=28 Score=25.03 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=27.0
Q ss_pred eCCCCeEEEEeecCHHHHHHHHH-HhCCceEEccC
Q 048554 10 DMAVQKVTLMSWEDQKKVLKIVK-KTGRSVKLWPY 43 (82)
Q Consensus 10 D~~~qkVtV~G~vdp~~vl~~l~-ktgK~a~~~~~ 43 (82)
+.=.+.|||+|-+...+|++.|+ +......|.|.
T Consensus 135 ~fFG~~ItVaGLLTg~Dii~~L~~~~~~d~lllP~ 169 (204)
T PF04459_consen 135 RFFGGTITVAGLLTGQDIIEQLKGKELGDLLLLPD 169 (204)
T ss_pred CCCCCCeEEeeCccHHHHHHHhCcCCCCCEEEECH
Confidence 44567999999999999999997 44446777775
No 21
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=50.46 E-value=35 Score=20.71 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=18.4
Q ss_pred CCCeEEEEeecCHHHHHHHHHH
Q 048554 12 AVQKVTLMSWEDQKKVLKIVKK 33 (82)
Q Consensus 12 ~~qkVtV~G~vdp~~vl~~l~k 33 (82)
..+|++++|.=..+++.+++++
T Consensus 56 ~sGki~itGaks~~~~~~a~~~ 77 (86)
T PF00352_consen 56 SSGKIVITGAKSEEEAKKAIEK 77 (86)
T ss_dssp TTSEEEEEEESSHHHHHHHHHH
T ss_pred cCCEEEEEecCCHHHHHHHHHH
Confidence 5789999999888888777764
No 22
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=50.01 E-value=19 Score=25.58 Aligned_cols=19 Identities=5% Similarity=-0.132 Sum_probs=16.7
Q ss_pred eeEEEEeCCCCeEEEEeec
Q 048554 4 VDNNDIDMAVQKVTLMSWE 22 (82)
Q Consensus 4 V~~v~vD~~~qkVtV~G~v 22 (82)
+.++++|+++++|.|+|.+
T Consensus 130 ~~~i~v~~~~~~V~V~Gtl 148 (188)
T PRK13726 130 QTSVRVWPQYGRVDIRGVL 148 (188)
T ss_pred eeeEEEccCCCEEEEEEEE
Confidence 3578999999999999975
No 23
>PRK11023 outer membrane lipoprotein; Provisional
Probab=49.44 E-value=19 Score=25.27 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=26.4
Q ss_pred EEEEeCCCCeEEEEeecCHHHHHHHHHHhCCce
Q 048554 6 NNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 6 ~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a 38 (82)
.+.+...+++|+++|.++-+....+..+.-++.
T Consensus 69 ~I~V~v~~G~V~L~G~V~~~~~k~~A~~ia~~v 101 (191)
T PRK11023 69 RINVTAYQGKVLLTGQSPNAELSERAKQIAMGV 101 (191)
T ss_pred eEEEEEECCEEEEEEEeCCHHHHHHHHHHHhcC
Confidence 588888999999999999988777776554443
No 24
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=48.07 E-value=31 Score=21.47 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=16.8
Q ss_pred CCeEEEEeecCHHHHHHHHHHhC
Q 048554 13 VQKVTLMSWEDQKKVLKIVKKTG 35 (82)
Q Consensus 13 ~qkVtV~G~vdp~~vl~~l~ktg 35 (82)
..++.|+|.++++.+.+.+++..
T Consensus 38 p~~i~i~gRl~~~~~~~yl~~i~ 60 (119)
T PF07744_consen 38 PKKIDIRGRLDPEKVWDYLRQIR 60 (119)
T ss_dssp -EEE-EEEE-SHHHHHHHHHHTS
T ss_pred CcEEEEEeecCHHHHHHHHHhcc
Confidence 45889999999999999986543
No 25
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=47.02 E-value=17 Score=26.67 Aligned_cols=27 Identities=7% Similarity=-0.044 Sum_probs=24.1
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHH
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVL 28 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl 28 (82)
.|=+.+.++-+.|.+.++|.|-|++|-
T Consensus 155 ~GeK~i~vN~~~e~I~lsGvVRP~DI~ 181 (224)
T PRK12698 155 RGEKWISINNGDEFIRLTGIVRSQDIT 181 (224)
T ss_pred EEEEEEEECCCEEEEEEEEEECHHHCC
Confidence 467889999999999999999999873
No 26
>PF11150 DUF2927: Protein of unknown function (DUF2927); InterPro: IPR021323 This family is conserved in Proteobacteria. Several members are described as being putative lipoproteins, but otherwise the function is not known.
Probab=45.44 E-value=11 Score=27.29 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=11.1
Q ss_pred ccCCCCCCCCCCc
Q 048554 66 LTDAMFSDENPHA 78 (82)
Q Consensus 66 ~~~~~FsDeNpna 78 (82)
..+++|+|+|+++
T Consensus 167 ~~pSIFNDd~~~~ 179 (213)
T PF11150_consen 167 ARPSIFNDDNEFA 179 (213)
T ss_pred CCCceeeCCCccc
Confidence 4689999999885
No 27
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=44.48 E-value=16 Score=23.81 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=18.1
Q ss_pred CCCeEEEEeecCHHHHHHHH-HHhCCce
Q 048554 12 AVQKVTLMSWEDQKKVLKIV-KKTGRSV 38 (82)
Q Consensus 12 ~~qkVtV~G~vdp~~vl~~l-~ktgK~a 38 (82)
...+|-|+|.-++++|++++ ||-|+.-
T Consensus 11 ~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 11 STKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 34578899999999999887 8999876
No 28
>PRK11023 outer membrane lipoprotein; Provisional
Probab=44.37 E-value=44 Score=23.41 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=20.0
Q ss_pred eEEEEeCCCCeEEEEeecCHHHHHH
Q 048554 5 DNNDIDMAVQKVTLMSWEDQKKVLK 29 (82)
Q Consensus 5 ~~v~vD~~~qkVtV~G~vdp~~vl~ 29 (82)
..|++..+++.|+++|.++.++.-+
T Consensus 145 ~~I~V~t~~G~V~L~G~v~~~e~~~ 169 (191)
T PRK11023 145 SNVKVTTENGEVFLLGLVTQREAKA 169 (191)
T ss_pred ceEEEEEECcEEEEEEEeCHHHHHH
Confidence 3677888899999999999765533
No 29
>PRK12788 flgH flagellar basal body L-ring protein; Reviewed
Probab=44.24 E-value=17 Score=26.95 Aligned_cols=27 Identities=0% Similarity=-0.007 Sum_probs=24.1
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHH
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVL 28 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl 28 (82)
.|=+.|.++.+.+.+.|.|.|-|++|-
T Consensus 166 ~G~kev~vN~e~~~i~vsGvVRP~DI~ 192 (234)
T PRK12788 166 SGSQEVRVNYEMRVLNVGGIVRPLDIT 192 (234)
T ss_pred EEEEEEEECCCEEEEEEEEEECHHHCC
Confidence 466889999999999999999999874
No 30
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=43.79 E-value=35 Score=20.58 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=15.0
Q ss_pred EeCCCCeE-EEEeecCHHHHHHHH
Q 048554 9 IDMAVQKV-TLMSWEDQKKVLKIV 31 (82)
Q Consensus 9 vD~~~qkV-tV~G~vdp~~vl~~l 31 (82)
+|.+.+.| .+.|.++++++++.|
T Consensus 89 ~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 89 LDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp CTTTSCEEEEEESS--HHHHHHHH
T ss_pred EcCCCCEEEEecCCCCHHHHHhhC
Confidence 45444545 478999999999875
No 31
>PRK12697 flgH flagellar basal body L-ring protein; Reviewed
Probab=42.39 E-value=19 Score=26.58 Aligned_cols=27 Identities=7% Similarity=-0.047 Sum_probs=24.0
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHH
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVL 28 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl 28 (82)
.|=+.+.++.+.|.+.|+|.|.|.+|-
T Consensus 158 ~GeK~i~vN~e~e~IrlsGvVRP~DI~ 184 (226)
T PRK12697 158 SGEKQMLINQGNEFVRFSGVVNPNTIS 184 (226)
T ss_pred EEEEEEEECCCEEEEEEEEEECHHHCC
Confidence 466789999999999999999999874
No 32
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=42.00 E-value=19 Score=26.38 Aligned_cols=27 Identities=0% Similarity=-0.086 Sum_probs=23.9
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHH
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVL 28 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl 28 (82)
.|=+.+.++-+.+.+.+.|.|.|++|-
T Consensus 152 ~GeK~i~vN~e~e~i~~sGvVRP~DI~ 178 (221)
T PRK12407 152 RGEKWLTLNQGDEYMRVTGLVRADDIA 178 (221)
T ss_pred EEEEEEEECCCEEEEEEEEEECHHHCC
Confidence 466789999999999999999999873
No 33
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=41.66 E-value=20 Score=26.45 Aligned_cols=27 Identities=11% Similarity=-0.038 Sum_probs=24.0
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHH
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVL 28 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl 28 (82)
.|=+.|.++-+.|.+.++|.|-|++|-
T Consensus 161 ~GeK~v~vN~e~e~i~lsGvVRP~DI~ 187 (230)
T PRK12701 161 QGEKWVRINQGNEFVRLSGIVRPQDIK 187 (230)
T ss_pred EEEEEEEECCCeEEEEEEEEECHHHCC
Confidence 467889999999999999999998873
No 34
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=41.43 E-value=36 Score=22.87 Aligned_cols=35 Identities=6% Similarity=0.012 Sum_probs=26.2
Q ss_pred eeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCce
Q 048554 4 VDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 4 V~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a 38 (82)
...+.+..+++.||+.|.+.-.....++...-+.+
T Consensus 42 ~~~i~V~v~~G~v~l~G~v~s~~~~~~~~~aa~~v 76 (147)
T PRK11198 42 DADVNVQVEDGKATVSGDAASQEAKEKILLAVGNI 76 (147)
T ss_pred cCCceEEEeCCEEEEEEEeCCHHHHHHHHHHhccC
Confidence 34456677799999999999888888886443344
No 35
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=41.42 E-value=23 Score=25.61 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=17.1
Q ss_pred cCHHHHHHHHHHhCCceEE
Q 048554 22 EDQKKVLKIVKKTGRSVKL 40 (82)
Q Consensus 22 vdp~~vl~~l~ktgK~a~~ 40 (82)
..|++||+.+-|.||++++
T Consensus 89 ~~P~~vL~EmlRVgr~~IV 107 (193)
T PF07021_consen 89 RRPDEVLEEMLRVGRRAIV 107 (193)
T ss_pred hHHHHHHHHHHHhcCeEEE
Confidence 5799999999999999976
No 36
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=41.38 E-value=21 Score=21.57 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=18.0
Q ss_pred CCe--eEEEEeCCCCeEEEEeecCH
Q 048554 2 IEV--DNNDIDMAVQKVTLMSWEDQ 24 (82)
Q Consensus 2 ~GV--~~v~vD~~~qkVtV~G~vdp 24 (82)
+|| ++++|+.+.+.++|+|.-..
T Consensus 19 PGv~~edi~v~~~~~~L~I~g~~~~ 43 (93)
T cd06471 19 PGFKKEDIKLDYKDGYLTISAKRDE 43 (93)
T ss_pred CCCCHHHeEEEEECCEEEEEEEEcc
Confidence 565 67888888999999997543
No 37
>PRK00249 flgH flagellar basal body L-ring protein; Reviewed
Probab=41.07 E-value=23 Score=25.79 Aligned_cols=27 Identities=0% Similarity=-0.015 Sum_probs=24.1
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHH
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVL 28 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl 28 (82)
.|=+.|.++-+.+.+.+.|.|.|++|-
T Consensus 154 ~G~K~i~vN~e~~~i~lsGiVRP~DI~ 180 (222)
T PRK00249 154 RGEKEVRVNQGTEFLRVSGVVRPRDIS 180 (222)
T ss_pred EEEEEEEECCCEEEEEEEEEECHHHCC
Confidence 466789999999999999999999874
No 38
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=40.71 E-value=28 Score=19.62 Aligned_cols=24 Identities=13% Similarity=0.374 Sum_probs=16.9
Q ss_pred CeEEEEee--cCHHHHHHHHH-HhCCc
Q 048554 14 QKVTLMSW--EDQKKVLKIVK-KTGRS 37 (82)
Q Consensus 14 qkVtV~G~--vdp~~vl~~l~-ktgK~ 37 (82)
++|.|+|. ++.++|++.+. ..|+.
T Consensus 4 ~~I~V~G~~~~~~~~i~~~~~~~~~~~ 30 (69)
T PF08478_consen 4 KKIEVSGNSYLSKEEILQALGIQKGKN 30 (69)
T ss_dssp -EEEEES-SSS-HHHHHHHHCTTSTTT
T ss_pred cEEEEECCCcCCHHHHHHHhCcCCCCe
Confidence 58899996 99999999986 44543
No 39
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=40.20 E-value=22 Score=19.30 Aligned_cols=22 Identities=9% Similarity=0.181 Sum_probs=17.1
Q ss_pred CCe--eEEEEeCCCCeEEEEeecC
Q 048554 2 IEV--DNNDIDMAVQKVTLMSWED 23 (82)
Q Consensus 2 ~GV--~~v~vD~~~qkVtV~G~vd 23 (82)
+|+ +++.|+...+.++|+|...
T Consensus 15 ~~~~~~~i~v~~~~~~l~v~~~~~ 38 (80)
T cd00298 15 PGVKKEDIKVEVEDNVLTISGKRE 38 (80)
T ss_pred CCCCHHHeEEEEECCEEEEEEEEc
Confidence 455 6788888889999998743
No 40
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=39.93 E-value=57 Score=21.02 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=20.1
Q ss_pred EeCCCCeEE----EEeecCHHHHHHHHHHhC
Q 048554 9 IDMAVQKVT----LMSWEDQKKVLKIVKKTG 35 (82)
Q Consensus 9 vD~~~qkVt----V~G~vdp~~vl~~l~ktg 35 (82)
+++..++.+ +.|.++|++++..|+...
T Consensus 83 l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 83 IMLKDNRMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEecCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 445555553 579999999999998654
No 41
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=38.67 E-value=25 Score=25.95 Aligned_cols=27 Identities=4% Similarity=0.040 Sum_probs=24.0
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHH
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVL 28 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl 28 (82)
.|=+.|.++-+.+.+.|.|.|-|++|-
T Consensus 168 ~G~k~v~vN~e~~~i~lsGvVRP~DI~ 194 (236)
T PRK12696 168 EGARETRVNDETQYIVVSGLVRPRDIG 194 (236)
T ss_pred EEEEEEEECCCEEEEEEEEEECHHHCC
Confidence 466889999999999999999999874
No 42
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=38.54 E-value=24 Score=20.28 Aligned_cols=24 Identities=4% Similarity=0.126 Sum_probs=18.2
Q ss_pred CCe--eEEEEeCCCCeEEEEeecCHH
Q 048554 2 IEV--DNNDIDMAVQKVTLMSWEDQK 25 (82)
Q Consensus 2 ~GV--~~v~vD~~~qkVtV~G~vdp~ 25 (82)
+|| ++++|....+++.|+|.....
T Consensus 16 pg~~~~~i~V~v~~~~l~I~g~~~~~ 41 (88)
T cd06464 16 PGFKKEDIKVEVEDGVLTISGEREEE 41 (88)
T ss_pred CCCCHHHeEEEEECCEEEEEEEEecc
Confidence 555 678888888999999875543
No 43
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=37.46 E-value=61 Score=19.35 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=16.3
Q ss_pred CeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceE
Q 048554 3 EVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVK 39 (82)
Q Consensus 3 GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~ 39 (82)
+++=+.||+.. .+...+..|++.|+++.
T Consensus 26 ~~~v~~iD~~~---------~~~~~I~~L~~~G~~vi 53 (74)
T PF03537_consen 26 DVDVVVIDLFD---------FSKEEIARLKAQGKKVI 53 (74)
T ss_dssp S-SEEEE-SBS-----------HHHHHHHHHTT-EEE
T ss_pred CCCEEEECCcc---------CCHHHHHHHHHCCCEEE
Confidence 34445555554 67788888999997775
No 44
>PF12182 DUF3642: Bacterial lipoprotein; InterPro: IPR020961 This region is found in proteins which are major virulence factors from Gram-negative bacteria and is approximately 60 amino acids in length. There is a single completely conserved Y residue that may be functionally important.; PDB: 3GE2_A.
Probab=37.40 E-value=46 Score=20.81 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=13.6
Q ss_pred eeEEEEeCCCCeEEE
Q 048554 4 VDNNDIDMAVQKVTL 18 (82)
Q Consensus 4 V~~v~vD~~~qkVtV 18 (82)
|+.|.+|+.+|+++|
T Consensus 42 ~~~V~~d~~nq~l~I 56 (79)
T PF12182_consen 42 IKQVTIDLANQRLTI 56 (79)
T ss_dssp EEEEEEETTTTEEEE
T ss_pred eeEEEEeccCCEEEE
Confidence 567999999999999
No 45
>PRK10671 copA copper exporting ATPase; Provisional
Probab=37.24 E-value=69 Score=27.12 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=34.5
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEc
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLW 41 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~ 41 (82)
+||.++.++...++..+.+..++..+.+.+++.|..+.++
T Consensus 125 ~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~~~ 164 (834)
T PRK10671 125 PGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAI 164 (834)
T ss_pred CCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCcccc
Confidence 6899999999999999987789999999999898877654
No 46
>PRK12700 flgH flagellar basal body L-ring protein; Reviewed
Probab=36.81 E-value=26 Score=25.78 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=23.9
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHH
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVL 28 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl 28 (82)
.|=+.|.++-+.+.+.++|.|.|++|-
T Consensus 162 ~GeK~i~vN~~~e~irlsGiVRP~DI~ 188 (230)
T PRK12700 162 AGEKQIAINRGSEYVRFSGVVDPRSIT 188 (230)
T ss_pred EEEEEEEECCCEEEEEEEEEECHHHCC
Confidence 466789999999999999999999874
No 47
>PRK12699 flgH flagellar basal body L-ring protein; Reviewed
Probab=36.64 E-value=29 Score=25.86 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=24.3
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHH
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVL 28 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl 28 (82)
.|=+.|.++-+.+.+.+.|.|.|++|-
T Consensus 179 ~GeK~i~vN~~~e~IrlsGvVRP~DI~ 205 (246)
T PRK12699 179 SGEKQIGINQGHEFIRLSGVINPINVI 205 (246)
T ss_pred EEEEEEEECCCeEEEEEEEEEChhhcc
Confidence 466789999999999999999999984
No 48
>PRK00051 hisI phosphoribosyl-AMP cyclohydrolase; Reviewed
Probab=35.90 E-value=1.4e+02 Score=20.25 Aligned_cols=38 Identities=21% Similarity=0.481 Sum_probs=30.2
Q ss_pred eeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEccC
Q 048554 4 VDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLWPY 43 (82)
Q Consensus 4 V~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~~ 43 (82)
|-.|..|...++|---|+++.+.|.+.|+ || .+.+|+-
T Consensus 15 ipaivqd~~tg~VLMlaymn~eAl~~Tl~-tg-~~~y~SR 52 (125)
T PRK00051 15 VPAIAQDAETGEVLMVAWMNEEALAKTLE-TG-RAHYWSR 52 (125)
T ss_pred EEEEEEECCCCCEEEEEEcCHHHHHHHHh-cC-cEEEEeC
Confidence 45677799999999999999999999986 55 4555543
No 49
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=35.89 E-value=59 Score=22.71 Aligned_cols=31 Identities=13% Similarity=0.032 Sum_probs=26.8
Q ss_pred CCeEEEEeecCHHHHHHHHHHhCCceEEccC
Q 048554 13 VQKVTLMSWEDQKKVLKIVKKTGRSVKLWPY 43 (82)
Q Consensus 13 ~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~~ 43 (82)
+.-|.|+|.-|=.-|+.+||..|+.++....
T Consensus 107 D~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 107 DAVALVTRDADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred CEEEEEeccHhHHHHHHHHHHCCCEEEEEeC
Confidence 3457889999999999999988999998864
No 50
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=35.76 E-value=54 Score=20.50 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=17.1
Q ss_pred CeEEEEeecCHHHHHHHHHH
Q 048554 14 QKVTLMSWEDQKKVLKIVKK 33 (82)
Q Consensus 14 qkVtV~G~vdp~~vl~~l~k 33 (82)
-.+.|.|.++++.+.+.|++
T Consensus 20 ~~l~i~Gd~~~~~~~~~i~~ 39 (184)
T PF05193_consen 20 MTLVIVGDIDPDELEKLIEK 39 (184)
T ss_dssp EEEEEEESSGHHHHHHHHHH
T ss_pred eEEEEEcCccHHHHHHHHHh
Confidence 46788999999999999874
No 51
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=35.47 E-value=82 Score=20.56 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=24.9
Q ss_pred EEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEcc
Q 048554 8 DIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLWP 42 (82)
Q Consensus 8 ~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~ 42 (82)
.+|-+ ++.+++|..++..|-+.|++==+.-.+.+
T Consensus 51 ~id~~-~rlii~G~~~~~~i~~~l~~yI~~yVlC~ 84 (110)
T smart00653 51 SIDGK-GRLIVNGRFTPKKLQDLLRRYIKEYVLCP 84 (110)
T ss_pred eECCC-CeEEEEEeeCHHHHHHHHHHHHHhcEECC
Confidence 45555 89999999999999999876443444433
No 52
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=35.29 E-value=80 Score=17.28 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=16.6
Q ss_pred EEEeCC--CCeEEEEeecCHHHHHHHHH
Q 048554 7 NDIDMA--VQKVTLMSWEDQKKVLKIVK 32 (82)
Q Consensus 7 v~vD~~--~qkVtV~G~vdp~~vl~~l~ 32 (82)
+.++.. ...|+|+| +++.|-++.+
T Consensus 33 I~i~~~~~~~~v~I~G--~~~~v~~A~~ 58 (60)
T PF00013_consen 33 IQIPDDDERDIVTISG--SPEQVEKAKK 58 (60)
T ss_dssp EEEESTTEEEEEEEEE--SHHHHHHHHH
T ss_pred EEEcCCCCcEEEEEEe--CHHHHHHHHh
Confidence 445443 35899999 7888877764
No 53
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=34.74 E-value=88 Score=19.28 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=19.3
Q ss_pred EEeC-CCCeEE-EEeecCHHHHHHHHHHh
Q 048554 8 DIDM-AVQKVT-LMSWEDQKKVLKIVKKT 34 (82)
Q Consensus 8 ~vD~-~~qkVt-V~G~vdp~~vl~~l~kt 34 (82)
-+|. ..+.+. +.|.++++.++..|++.
T Consensus 82 ~i~~~~g~~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 82 IIDPRTGEVLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred EEeCccCcEeEEEcCCCCHHHHHHHHHHH
Confidence 3566 344444 47999999999999854
No 54
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=34.69 E-value=33 Score=23.52 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=20.5
Q ss_pred eEEEEeecCHHHHHHHHHHhCCceEEc
Q 048554 15 KVTLMSWEDQKKVLKIVKKTGRSVKLW 41 (82)
Q Consensus 15 kVtV~G~vdp~~vl~~l~ktgK~a~~~ 41 (82)
+|-.+|.|+|+=||++|++ |-+..++
T Consensus 34 rv~CsGrvn~~fvl~Al~~-GaDGV~v 59 (132)
T COG1908 34 RVMCSGRVNPEFVLKALRK-GADGVLV 59 (132)
T ss_pred EeeccCccCHHHHHHHHHc-CCCeEEE
Confidence 4566899999999999984 5566665
No 55
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=34.31 E-value=87 Score=26.72 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=34.3
Q ss_pred CCCeeEEEEeCCCCeEEEEe---ecC-HHHHHHHHHHhCCceEE
Q 048554 1 FIEVDNNDIDMAVQKVTLMS---WED-QKKVLKIVKKTGRSVKL 40 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G---~vd-p~~vl~~l~ktgK~a~~ 40 (82)
.+||++..+++...+++|.. ..+ ++.+.+++++.|-.+..
T Consensus 26 ~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~ 69 (713)
T COG2217 26 LPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL 69 (713)
T ss_pred CCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence 47999999999999999984 466 89999999999987754
No 56
>PF10656 DUF2483: Hypothetical protein of unknown function (DUF2483); InterPro: IPR018918 This entry is represented by Bacteriophage phi ETA, Orf16. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins found in bacteriophage particularly of the SA bacteriophages 11, Mu50B, family, homologous to phi-ETA Orf16.
Probab=32.49 E-value=17 Score=22.59 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=15.8
Q ss_pred CCCeeEEEEeCCCC---eEEEEe
Q 048554 1 FIEVDNNDIDMAVQ---KVTLMS 20 (82)
Q Consensus 1 ~~GV~~v~vD~~~q---kVtV~G 20 (82)
|.|.+.+.||+.+. |.||+-
T Consensus 41 f~Gld~~~Idm~~H~aIk~t~te 63 (72)
T PF10656_consen 41 FDGLDDISIDMTKHKAIKKTVTE 63 (72)
T ss_pred cCCchheeechhhceeeEEEEEe
Confidence 78999999999987 455543
No 57
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=32.20 E-value=1.2e+02 Score=21.73 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=25.8
Q ss_pred EEEeCCCCeEEEEee--------cCHHHHHHHHHHhCCceEE
Q 048554 7 NDIDMAVQKVTLMSW--------EDQKKVLKIVKKTGRSVKL 40 (82)
Q Consensus 7 v~vD~~~qkVtV~G~--------vdp~~vl~~l~ktgK~a~~ 40 (82)
..+|+.++++ |+|. .||.+++++++..|-+...
T Consensus 8 p~iD~~~G~~-V~~~~~~~~~~~~dp~~~a~~~~~~G~~~l~ 48 (254)
T TIGR00735 8 PCLDVRDGRV-VKGVQFLNLRDAGDPVELAQRYDEEGADELV 48 (254)
T ss_pred EEEEeECCEE-EEeEeecCceECCCHHHHHHHHHHcCCCEEE
Confidence 3578889998 8763 5999999999988765544
No 58
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=31.01 E-value=52 Score=21.72 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=24.1
Q ss_pred eCCCCeEEEEee-cCHHHHHHHHHHhCCceEEc
Q 048554 10 DMAVQKVTLMSW-EDQKKVLKIVKKTGRSVKLW 41 (82)
Q Consensus 10 D~~~qkVtV~G~-vdp~~vl~~l~ktgK~a~~~ 41 (82)
+...++|.|.|. ...-.++..|.+.|+++.+.
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~ 196 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLV 196 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEE
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEE
Confidence 356789999886 88888888898889887764
No 59
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=30.84 E-value=86 Score=17.89 Aligned_cols=19 Identities=0% Similarity=0.011 Sum_probs=16.5
Q ss_pred CeEEEEee-cCHHHHHHHHH
Q 048554 14 QKVTLMSW-EDQKKVLKIVK 32 (82)
Q Consensus 14 qkVtV~G~-vdp~~vl~~l~ 32 (82)
+.|+|+|. -.|.++.++|.
T Consensus 6 G~Isvs~~~~s~~d~~~~la 25 (56)
T PF07338_consen 6 GTISVSGNFGSPDDAEEALA 25 (56)
T ss_dssp EEEEEEEECSSHHHHHHHHH
T ss_pred EEEEEccccCCHHHHHHHHH
Confidence 47899998 89999999995
No 60
>PF13216 DUF4024: Protein of unknown function (DUF4024)
Probab=30.27 E-value=20 Score=19.04 Aligned_cols=10 Identities=30% Similarity=0.444 Sum_probs=8.8
Q ss_pred CCCCCCCCCC
Q 048554 68 DAMFSDENPH 77 (82)
Q Consensus 68 ~~~FsDeNpn 77 (82)
..+|-|||.|
T Consensus 9 lhlfrde~vn 18 (35)
T PF13216_consen 9 LHLFRDEKVN 18 (35)
T ss_pred EEEeecCCcc
Confidence 5789999999
No 61
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only]
Probab=30.09 E-value=1e+02 Score=22.40 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=22.6
Q ss_pred EEEEeCCCCeEEEEee---cCHHHHHHHH
Q 048554 6 NNDIDMAVQKVTLMSW---EDQKKVLKIV 31 (82)
Q Consensus 6 ~v~vD~~~qkVtV~G~---vdp~~vl~~l 31 (82)
.+.+|.+++.|+|+.+ -||..++++.
T Consensus 40 ~~~iD~~~~~V~i~~~~~t~Dp~~~~ka~ 68 (194)
T COG1094 40 KLRIDSKTGSVTIRTTRKTEDPLALLKAR 68 (194)
T ss_pred EEEEECCCCeEEEEecCCCCChHHHHHHH
Confidence 6889999999999876 7999888875
No 62
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=29.54 E-value=83 Score=25.40 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=25.9
Q ss_pred eCCCCeEEEEeecCHHHHHHHHHH--hCCceEEccC
Q 048554 10 DMAVQKVTLMSWEDQKKVLKIVKK--TGRSVKLWPY 43 (82)
Q Consensus 10 D~~~qkVtV~G~vdp~~vl~~l~k--tgK~a~~~~~ 43 (82)
+.=.+.|||+|-+.-..|++.|+. .| ...+.|.
T Consensus 357 ~ffG~~vtV~GLltg~Dii~~l~~~~~g-d~lliP~ 391 (433)
T TIGR03279 357 DYWGQEITVTGLLTGQDLIAGLKGKDLG-DGLLLPS 391 (433)
T ss_pred CCCCCCeeEeecccHHHHHHHhCCCCCC-CeEEecH
Confidence 556789999999999999999972 44 4556664
No 63
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=28.75 E-value=34 Score=22.57 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=15.7
Q ss_pred ecCHHHHHHHHHHhCCceE
Q 048554 21 WEDQKKVLKIVKKTGRSVK 39 (82)
Q Consensus 21 ~vdp~~vl~~l~ktgK~a~ 39 (82)
.++|+.++++|+|-||..|
T Consensus 75 ~~~~e~~~~RI~kRgR~~E 93 (146)
T PF01712_consen 75 DASPETCLERIKKRGREEE 93 (146)
T ss_dssp E--HHHHHHHHHHCTTGGG
T ss_pred eCCHHHHHHHHHHhCCchh
Confidence 4899999999999999987
No 64
>PF03958 Secretin_N: Bacterial type II/III secretion system short domain; InterPro: IPR005644 This is a group of NolW-like proteins, which are closely related to bacterial type II and III secretion system protein (IPR004846 from INTERPRO).; PDB: 3EZJ_C 2Y3M_A 3OSS_D.
Probab=28.08 E-value=1.3e+02 Score=17.32 Aligned_cols=22 Identities=5% Similarity=-0.064 Sum_probs=17.4
Q ss_pred EEEEeCCCCeEEEEeecCHHHH
Q 048554 6 NNDIDMAVQKVTLMSWEDQKKV 27 (82)
Q Consensus 6 ~v~vD~~~qkVtV~G~vdp~~v 27 (82)
+|..|...+.+.|+|.-+--..
T Consensus 47 ~i~~d~~tNsliv~g~~~~~~~ 68 (82)
T PF03958_consen 47 RIVADERTNSLIVRGTPEDLEQ 68 (82)
T ss_dssp EEEEECTTTEEEEEEEHHHHHH
T ss_pred EEEEECCCCEEEEEeCHHHHHH
Confidence 7889999999999998443333
No 65
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=27.67 E-value=51 Score=15.91 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=13.4
Q ss_pred EeecCHHHHHHHHH-HhC
Q 048554 19 MSWEDQKKVLKIVK-KTG 35 (82)
Q Consensus 19 ~G~vdp~~vl~~l~-ktg 35 (82)
.|.|+.+++...|+ ..|
T Consensus 14 dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 14 DGFIDFEELRAILRKSLG 31 (31)
T ss_dssp SSEEEHHHHHHHHHHHTT
T ss_pred CCcCcHHHHHHHHHHhcC
Confidence 37899999999998 354
No 66
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=27.61 E-value=1.9e+02 Score=19.26 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=30.9
Q ss_pred eeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEccCC
Q 048554 4 VDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLWPYS 44 (82)
Q Consensus 4 V~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~~p 44 (82)
|--|.-|.+.++|---|+++.+.|-+.|+ || .|.+|+-.
T Consensus 19 vpaIvQd~~t~eVLMlaymN~eAl~kTle-Tg-~~~y~SRS 57 (111)
T COG0139 19 VPAIVQDAETGEVLMLAYMNEEALAKTLE-TG-EAHYYSRS 57 (111)
T ss_pred EEEEEEecCCCcEEEEEecCHHHHHHHHh-cC-eEEEEEcc
Confidence 45567788999999999999999988876 66 56666543
No 67
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=27.30 E-value=1.2e+02 Score=16.86 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=21.2
Q ss_pred CeEEEEee--cCHHHHHHHHHHhCCceEE
Q 048554 14 QKVTLMSW--EDQKKVLKIVKKTGRSVKL 40 (82)
Q Consensus 14 qkVtV~G~--vdp~~vl~~l~ktgK~a~~ 40 (82)
.-|+|+|. =+.+.|++.+...|.-...
T Consensus 2 ~wI~V~Gf~~~~~~~vl~~F~~fGeI~~~ 30 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLEHFASFGEIVDI 30 (53)
T ss_pred cEEEEEeECchHHHHHHHHHHhcCCEEEE
Confidence 46899997 5567799999999976654
No 68
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=27.09 E-value=45 Score=20.35 Aligned_cols=18 Identities=6% Similarity=-0.043 Sum_probs=15.0
Q ss_pred eEEEEeCCCCeEEEEeec
Q 048554 5 DNNDIDMAVQKVTLMSWE 22 (82)
Q Consensus 5 ~~v~vD~~~qkVtV~G~v 22 (82)
++++|+...+.++|+|.-
T Consensus 24 edi~V~v~~~~L~I~g~~ 41 (86)
T cd06475 24 EELVVKTKDGVVEITGKH 41 (86)
T ss_pred HHEEEEEECCEEEEEEEE
Confidence 467888889999999973
No 69
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=26.95 E-value=93 Score=20.70 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=22.5
Q ss_pred EEEeCCCCeEEEEeecCHHHHHHHHHHh
Q 048554 7 NDIDMAVQKVTLMSWEDQKKVLKIVKKT 34 (82)
Q Consensus 7 v~vD~~~qkVtV~G~vdp~~vl~~l~kt 34 (82)
..+|-+ ++.++.|..+++.|-+.|++=
T Consensus 63 ~~id~~-~~lii~G~~~~~~i~~~L~~f 89 (125)
T PF01873_consen 63 GSIDGK-GRLIINGRFSSKQIQDLLDKF 89 (125)
T ss_dssp EEEETT-TEEEEESSSSCCHHHHHHHHH
T ss_pred eEECCC-CEEEEEEecCHHHHHHHHHHH
Confidence 456766 999999999999998888753
No 70
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=26.76 E-value=1.1e+02 Score=24.08 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=28.3
Q ss_pred EeCCCCeEEEEee-cCHHHHHHHHHHhCCceEE
Q 048554 9 IDMAVQKVTLMSW-EDQKKVLKIVKKTGRSVKL 40 (82)
Q Consensus 9 vD~~~qkVtV~G~-vdp~~vl~~l~ktgK~a~~ 40 (82)
.|+..++|.|.|. -....|+..|.+.|+++.+
T Consensus 171 ~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~ 203 (443)
T COG2072 171 EDLRGKRVLVIGAGASAVDIAPELAEVGASVTL 203 (443)
T ss_pred cccCCCeEEEECCCccHHHHHHHHHhcCCeeEE
Confidence 3678899999998 9999999999999988776
No 71
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=26.74 E-value=1e+02 Score=25.53 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=28.5
Q ss_pred EEEeCCCCeEEEEeecCHHHHHHHHHHhCCce
Q 048554 7 NDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 7 v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a 38 (82)
+++|.+++.|||.+-+--.+|.+.|.+.|...
T Consensus 117 l~vD~~~~tVtV~AG~~l~~L~~~L~~~Glal 148 (541)
T TIGR01676 117 LEVDEEKKRVRVQAGIRVQQLVDAIKEYGITL 148 (541)
T ss_pred EEEcCCCCEEEEcCCCCHHHHHHHHHHcCCEe
Confidence 47899999999999999999999999999544
No 72
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=26.58 E-value=42 Score=20.50 Aligned_cols=19 Identities=5% Similarity=0.039 Sum_probs=15.9
Q ss_pred eEEEEeCCCCeEEEEeecC
Q 048554 5 DNNDIDMAVQKVTLMSWED 23 (82)
Q Consensus 5 ~~v~vD~~~qkVtV~G~vd 23 (82)
++++|+.+.++++|+|.-.
T Consensus 21 edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 21 DEITVRTVDNLLEVSARHP 39 (83)
T ss_pred HHeEEEEECCEEEEEEEEc
Confidence 4688888999999999854
No 73
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=26.52 E-value=97 Score=21.50 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=19.4
Q ss_pred CCCeEEEEeecCHHHHHHHHHHh
Q 048554 12 AVQKVTLMSWEDQKKVLKIVKKT 34 (82)
Q Consensus 12 ~~qkVtV~G~vdp~~vl~~l~kt 34 (82)
..+||++||.=.++++.+++++.
T Consensus 146 ~sGkvvitGaks~~~~~~a~~~i 168 (174)
T cd00652 146 VSGKIVITGAKSREDIYEAVEKI 168 (174)
T ss_pred cCCEEEEEecCCHHHHHHHHHHH
Confidence 57999999999988888887654
No 74
>PF14611 SLS: Mitochondrial inner-membrane-bound regulator
Probab=26.18 E-value=1e+02 Score=21.28 Aligned_cols=34 Identities=0% Similarity=0.081 Sum_probs=25.9
Q ss_pred eEEEEeCCCCeEEEEee-cCHHHHHHHHHHhCCce
Q 048554 5 DNNDIDMAVQKVTLMSW-EDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 5 ~~v~vD~~~qkVtV~G~-vdp~~vl~~l~ktgK~a 38 (82)
..|++..+.+++.|+|. -+.+-|...|.+.-.++
T Consensus 57 ~~I~~~~~~~~i~I~g~k~~~~~i~~~i~~~l~~i 91 (210)
T PF14611_consen 57 AKIEVSRSENRIRITGTKSTAEYIEASINEILSNI 91 (210)
T ss_pred ceEEEecCCcEEEEEccHHHHHHHHHHHHHHHhhc
Confidence 46788889999999997 77777777776554443
No 75
>PRK10568 periplasmic protein; Provisional
Probab=25.81 E-value=98 Score=21.85 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=19.4
Q ss_pred EEEEeCCCCeEEEEeecCHHHHHHHH
Q 048554 6 NNDIDMAVQKVTLMSWEDQKKVLKIV 31 (82)
Q Consensus 6 ~v~vD~~~qkVtV~G~vdp~~vl~~l 31 (82)
.+.+...++.|+++|.++-..-.+++
T Consensus 79 ~I~V~v~~G~V~L~G~V~s~~~~~~a 104 (203)
T PRK10568 79 DISVKTHQKVVTLSGFVESQAQAEEA 104 (203)
T ss_pred ceEEEEECCEEEEEEEeCCHHHHHHH
Confidence 57888899999999999844433333
No 76
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=25.81 E-value=44 Score=20.57 Aligned_cols=20 Identities=5% Similarity=-0.085 Sum_probs=16.5
Q ss_pred eEEEEeCCCCeEEEEeecCH
Q 048554 5 DNNDIDMAVQKVTLMSWEDQ 24 (82)
Q Consensus 5 ~~v~vD~~~qkVtV~G~vdp 24 (82)
++++|+.+.+.++|+|.-..
T Consensus 21 edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 21 EDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred HHeEEEEECCEEEEEEEEcc
Confidence 46889999999999998543
No 77
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=25.72 E-value=1e+02 Score=21.51 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=19.1
Q ss_pred CCCCeEEEEeecCHHHHHHHHHHh
Q 048554 11 MAVQKVTLMSWEDQKKVLKIVKKT 34 (82)
Q Consensus 11 ~~~qkVtV~G~vdp~~vl~~l~kt 34 (82)
...+||++||.=..+++-+++++.
T Consensus 144 F~SGKvvitGaks~~~~~~a~~~i 167 (174)
T cd04518 144 FSSGKMVITGAKSEEDAKRAVEKL 167 (174)
T ss_pred eCCCEEEEEecCCHHHHHHHHHHH
Confidence 357999999998888887777653
No 78
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=25.72 E-value=2.1e+02 Score=19.00 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=22.0
Q ss_pred CCCeEEEEee------cCHHHHHHHHH-HhCCceEEccCC
Q 048554 12 AVQKVTLMSW------EDQKKVLKIVK-KTGRSVKLWPYS 44 (82)
Q Consensus 12 ~~qkVtV~G~------vdp~~vl~~l~-ktgK~a~~~~~p 44 (82)
+..-|-+||. +=..+||+.|. ++++.-.+.-.|
T Consensus 61 ~~~vv~ltGvG~l~P~~R~h~lL~~l~~~~~~~plv~FyP 100 (126)
T PF08747_consen 61 DRDVVFLTGVGSLFPFIRSHELLNNLQPKFGNVPLVVFYP 100 (126)
T ss_pred CCcEEEEeCcchhcchhhHHHHHHHHHHHhcCCeEEEECC
Confidence 3445666653 66789999996 776666655444
No 79
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=25.19 E-value=47 Score=20.34 Aligned_cols=18 Identities=6% Similarity=0.154 Sum_probs=15.0
Q ss_pred eEEEEeCCCCeEEEEeec
Q 048554 5 DNNDIDMAVQKVTLMSWE 22 (82)
Q Consensus 5 ~~v~vD~~~qkVtV~G~v 22 (82)
++++|..++++++|+|.-
T Consensus 21 edI~V~v~~~~L~I~g~~ 38 (87)
T cd06481 21 EDLSVRVDGRKLVVTGKR 38 (87)
T ss_pred HHeEEEEECCEEEEEEEE
Confidence 467888889999999964
No 80
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=25.16 E-value=52 Score=17.53 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=15.5
Q ss_pred EeecCHHHHHHHHHHhCCc
Q 048554 19 MSWEDQKKVLKIVKKTGRS 37 (82)
Q Consensus 19 ~G~vdp~~vl~~l~ktgK~ 37 (82)
+|.++.+++...|++.|..
T Consensus 2 ~G~i~~~~~~~~l~~~g~~ 20 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIK 20 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSS
T ss_pred cCEECHHHHHHHHHHhCCC
Confidence 4789999999999777755
No 81
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=25.14 E-value=99 Score=21.42 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=27.0
Q ss_pred CCCeEEEEeecCHHHHHHHHHHhCCceEEccC
Q 048554 12 AVQKVTLMSWEDQKKVLKIVKKTGRSVKLWPY 43 (82)
Q Consensus 12 ~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~~ 43 (82)
-+--|.++|.-|=.-++++++..|+++++.+.
T Consensus 111 ~D~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~ 142 (181)
T COG1432 111 VDTIVLFSGDGDFIPLVEAARDKGKRVEVAGI 142 (181)
T ss_pred CCEEEEEcCCccHHHHHHHHHHcCCEEEEEec
Confidence 34467788999988899999999999999765
No 82
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=24.49 E-value=71 Score=22.67 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=18.2
Q ss_pred CCCeeEEEEeCCCCeEEEEeec
Q 048554 1 FIEVDNNDIDMAVQKVTLMSWE 22 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~v 22 (82)
++|+.++.++.++++++|-|.-
T Consensus 197 ~~~~~~~~vet~~g~~~VGG~~ 218 (233)
T PF11495_consen 197 FPGVASFTVETDDGEVTVGGWG 218 (233)
T ss_dssp TTTEEEEEEEETTEEEEEE-TT
T ss_pred CCceeEEEEEeCCceEEecCcc
Confidence 4688999999999999999863
No 83
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=24.39 E-value=24 Score=22.03 Aligned_cols=8 Identities=38% Similarity=0.351 Sum_probs=5.6
Q ss_pred CCCCCCCC
Q 048554 69 AMFSDENP 76 (82)
Q Consensus 69 ~~FsDeNp 76 (82)
-+|||+|=
T Consensus 15 fYFSd~NL 22 (82)
T cd08032 15 FWFGDVNL 22 (82)
T ss_pred hhcchhhc
Confidence 36888873
No 84
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=24.26 E-value=1.2e+02 Score=21.15 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=18.9
Q ss_pred CCCeEEEEeecCHHHHHHHHHH
Q 048554 12 AVQKVTLMSWEDQKKVLKIVKK 33 (82)
Q Consensus 12 ~~qkVtV~G~vdp~~vl~~l~k 33 (82)
..+||+|+|.=.++++-+++++
T Consensus 146 ~sGkivitGaks~~~~~~a~~~ 167 (174)
T cd04517 146 STGSVTVTGARSMEDVREAVEK 167 (174)
T ss_pred CCCEEEEEecCCHHHHHHHHHH
Confidence 5799999999888888888764
No 85
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=24.21 E-value=58 Score=19.63 Aligned_cols=17 Identities=6% Similarity=0.024 Sum_probs=14.5
Q ss_pred eEEEEeCCCCeEEEEee
Q 048554 5 DNNDIDMAVQKVTLMSW 21 (82)
Q Consensus 5 ~~v~vD~~~qkVtV~G~ 21 (82)
++++|+...+.++|+|.
T Consensus 21 edI~V~v~~~~L~I~g~ 37 (83)
T cd06478 21 EELSVKVLGDFVEIHGK 37 (83)
T ss_pred HHeEEEEECCEEEEEEE
Confidence 46888888999999996
No 86
>PF08142 AARP2CN: AARP2CN (NUC121) domain; InterPro: IPR012948 This domain is the central domain of AARP2 (asparagine and aspartate rich protein 2). It is weakly similar to the GTP-binding domain of elongation factor TU []. PfAARP2 is an antigen from Plasmodium falciparum of 150 kDa, which is encoded by a unique gene on chromosome 1 []. The central region of Pfaarp2 contains blocks of repetitions encoding asparagine and aspartate residues. ; GO: 0042254 ribosome biogenesis, 0005634 nucleus
Probab=24.10 E-value=1.1e+02 Score=18.93 Aligned_cols=8 Identities=0% Similarity=0.260 Sum_probs=6.8
Q ss_pred eEEEEeec
Q 048554 15 KVTLMSWE 22 (82)
Q Consensus 15 kVtV~G~v 22 (82)
++.|+|+|
T Consensus 47 ~l~v~Gyv 54 (85)
T PF08142_consen 47 TLKVYGYV 54 (85)
T ss_pred EEEEEEEE
Confidence 88889986
No 87
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=23.65 E-value=52 Score=20.09 Aligned_cols=18 Identities=0% Similarity=0.065 Sum_probs=15.0
Q ss_pred eEEEEeCCCCeEEEEeec
Q 048554 5 DNNDIDMAVQKVTLMSWE 22 (82)
Q Consensus 5 ~~v~vD~~~qkVtV~G~v 22 (82)
++++|..+.+.++|.|.-
T Consensus 22 edi~V~v~~~~L~I~ger 39 (81)
T cd06479 22 EDIIVTTSNNQIEVHAEK 39 (81)
T ss_pred HHeEEEEECCEEEEEEEE
Confidence 467888889999999974
No 88
>COG1765 Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=22.89 E-value=1.1e+02 Score=20.24 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=19.8
Q ss_pred eEEEEeecCHHHHHHHHHHhCCc
Q 048554 15 KVTLMSWEDQKKVLKIVKKTGRS 37 (82)
Q Consensus 15 kVtV~G~vdp~~vl~~l~ktgK~ 37 (82)
+++|.|.+|.+++.+.+++..++
T Consensus 93 ~~~v~gd~~~e~~~~~i~~a~ek 115 (137)
T COG1765 93 HFVVKGDLDEEKLKRAVELAEEK 115 (137)
T ss_pred EEEEecCCCHHHHHHHHHHHhcc
Confidence 67889999999999999877764
No 89
>PF02983 Pro_Al_protease: Alpha-lytic protease prodomain; InterPro: IPR004236 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. The alpha-lytic protease prodomain is associated with serine peptidases, specifically the alpha-lytic endopeptidases and streptogrisin A, B, C, D and E, which are bacterial enzymes and which belong to MEROPS peptidase subfamily S1A (IPR001316 from INTERPRO). The protease precursor in Gram-negative bacterial proteases may be a general property of extracellular bacterial proteases []. The proteases are encoded with a large (166 amino acid) N-terminal pro region that is required transiently both in vivo and in vitro for the correct folding of the protease domain [, ]. The pro region also acts as a potent inhibitor of the mature enzyme []. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis, 0005576 extracellular region; PDB: 3PRO_C 2PRO_B 4PRO_C.
Probab=22.89 E-value=1.5e+02 Score=17.08 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=15.9
Q ss_pred CeeEEEEeCCCCeEEEEee
Q 048554 3 EVDNNDIDMAVQKVTLMSW 21 (82)
Q Consensus 3 GV~~v~vD~~~qkVtV~G~ 21 (82)
++.+--+|...++|+|+-.
T Consensus 24 ~~~~WyvD~~tn~VVV~a~ 42 (62)
T PF02983_consen 24 AVTSWYVDPRTNKVVVTAD 42 (62)
T ss_dssp CEEEEEEECCCTEEEEEEE
T ss_pred CcceEEEeCCCCeEEEEEC
Confidence 5777889999999999853
No 90
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=22.81 E-value=80 Score=19.28 Aligned_cols=15 Identities=7% Similarity=-0.106 Sum_probs=12.6
Q ss_pred EEEeCCCCeEEEEee
Q 048554 7 NDIDMAVQKVTLMSW 21 (82)
Q Consensus 7 v~vD~~~qkVtV~G~ 21 (82)
..||.+.++|+|.|-
T Consensus 28 ~~V~~~~~~V~Vegv 42 (76)
T PRK12281 28 LAVLPKKNRVIVEGV 42 (76)
T ss_pred EEEEcCCCEEEEcCc
Confidence 467889999999985
No 91
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=22.46 E-value=58 Score=19.88 Aligned_cols=18 Identities=6% Similarity=0.075 Sum_probs=15.2
Q ss_pred eEEEEeCCCCeEEEEeec
Q 048554 5 DNNDIDMAVQKVTLMSWE 22 (82)
Q Consensus 5 ~~v~vD~~~qkVtV~G~v 22 (82)
++++|+...+.++|+|.-
T Consensus 24 edi~V~v~~~~L~I~g~~ 41 (86)
T cd06497 24 EDLTVKVLDDYVEIHGKH 41 (86)
T ss_pred HHeEEEEECCEEEEEEEE
Confidence 468888889999999974
No 92
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=22.22 E-value=1.5e+02 Score=24.74 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=28.8
Q ss_pred EEEeCCCCeEEEEeecCHHHHHHHHHHhCCceE
Q 048554 7 NDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVK 39 (82)
Q Consensus 7 v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~ 39 (82)
+++|.++++|||.+-+--.+|.+.|.+.|-...
T Consensus 152 l~vD~e~~~VtV~AG~~l~~L~~~L~~~GLal~ 184 (573)
T PLN02465 152 LEVDKEKKRVTVQAGARVQQVVEALRPHGLTLQ 184 (573)
T ss_pred EEEeCCCCEEEEccCCCHHHHHHHHHHcCCEec
Confidence 378999999999999999999999999995543
No 93
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=22.05 E-value=1.4e+02 Score=20.88 Aligned_cols=22 Identities=9% Similarity=0.246 Sum_probs=18.5
Q ss_pred CCCeEEEEeecCHHHHHHHHHH
Q 048554 12 AVQKVTLMSWEDQKKVLKIVKK 33 (82)
Q Consensus 12 ~~qkVtV~G~vdp~~vl~~l~k 33 (82)
..+||+|||.=.++++-+++++
T Consensus 145 ~sGkvvitGaks~~~~~~a~~~ 166 (174)
T cd04516 145 VSGKIVLTGAKSREEIYQAFEN 166 (174)
T ss_pred CCCEEEEEecCCHHHHHHHHHH
Confidence 5799999999888888877764
No 94
>PF12971 NAGLU_N: Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain; InterPro: IPR024240 Alpha-N-acetylglucosaminidase, is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This entry represents the N-terminal domain of Alpha-N-acetylglucosaminidase which has an alpha-beta fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=22.00 E-value=1.1e+02 Score=18.75 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=15.4
Q ss_pred CeeEEEEeC-CCCeEEEEee
Q 048554 3 EVDNNDIDM-AVQKVTLMSW 21 (82)
Q Consensus 3 GV~~v~vD~-~~qkVtV~G~ 21 (82)
|-+.+++.. ..+||+|+|+
T Consensus 30 ~~d~F~l~~~~~gki~I~G~ 49 (86)
T PF12971_consen 30 GKDVFELSSADNGKIVIRGN 49 (86)
T ss_dssp TBEEEEEEE-SSS-EEEEES
T ss_pred CCCEEEEEeCCCCeEEEEeC
Confidence 557788887 9999999997
No 95
>PHA00515 hypothetical protein
Probab=21.69 E-value=65 Score=18.39 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhCCceEEcc
Q 048554 24 QKKVLKIVKKTGRSVKLWP 42 (82)
Q Consensus 24 p~~vl~~l~ktgK~a~~~~ 42 (82)
.++|-.+|++||.+|..+.
T Consensus 23 skklpqairrtgqraspvg 41 (53)
T PHA00515 23 SKKLPQAIRRTGQRASPVG 41 (53)
T ss_pred HhHhHHHHHHhccccCccc
Confidence 4577788999999986544
No 96
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]
Probab=21.67 E-value=92 Score=24.37 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=19.5
Q ss_pred cCHHHHHHHHHHhCCceEEccCCC
Q 048554 22 EDQKKVLKIVKKTGRSVKLWPYSY 45 (82)
Q Consensus 22 vdp~~vl~~l~ktgK~a~~~~~p~ 45 (82)
+|-+.|++.++||||-..+-..++
T Consensus 240 lD~etIi~SvkKTgR~viV~Ea~~ 263 (324)
T COG0022 240 LDKETIIASVKKTGRLVIVHEAPK 263 (324)
T ss_pred cCHHHHHHHHHhhCcEEEEEeccc
Confidence 899999999999998777654433
No 97
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=21.65 E-value=1.6e+02 Score=16.16 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=13.3
Q ss_pred CCeEEEEeecCHHHHHHHHH
Q 048554 13 VQKVTLMSWEDQKKVLKIVK 32 (82)
Q Consensus 13 ~qkVtV~G~vdp~~vl~~l~ 32 (82)
...|+++|. ++.|.++..
T Consensus 42 ~~~v~I~G~--~~~v~~A~~ 59 (62)
T cd02394 42 SDTITITGP--KENVEKAKE 59 (62)
T ss_pred CCEEEEEcC--HHHHHHHHH
Confidence 589999999 566665543
No 98
>PRK00394 transcription factor; Reviewed
Probab=21.63 E-value=1.4e+02 Score=20.94 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=17.2
Q ss_pred CCCeEEEEeecCHHHHHHHHHH
Q 048554 12 AVQKVTLMSWEDQKKVLKIVKK 33 (82)
Q Consensus 12 ~~qkVtV~G~vdp~~vl~~l~k 33 (82)
..+||++||.=..+++-+++++
T Consensus 146 ~SGKvvitGaks~~~~~~a~~~ 167 (179)
T PRK00394 146 GSGKLVITGAKSEEDAEKAVEK 167 (179)
T ss_pred cCCEEEEEecCCHHHHHHHHHH
Confidence 5789999999777776666654
No 99
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=21.47 E-value=1.5e+02 Score=23.06 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=29.2
Q ss_pred EEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEc
Q 048554 8 DIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLW 41 (82)
Q Consensus 8 ~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~ 41 (82)
++|.+++.|||.+-+--.+|.+.|.+.|......
T Consensus 65 ~~d~~~~~v~v~aG~~l~~l~~~L~~~G~~l~~~ 98 (419)
T TIGR01679 65 DVDQPTGLATVEAGTRLGALGPQLAQRGLGLENQ 98 (419)
T ss_pred eecCCCCEEEEcCCCCHHHHHHHHHHcCCccccC
Confidence 7888899999999999999999999999754433
No 100
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=21.43 E-value=1.5e+02 Score=22.33 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=22.1
Q ss_pred CCCeEEEEeec--CHHHHHHHHHHhCCce
Q 048554 12 AVQKVTLMSWE--DQKKVLKIVKKTGRSV 38 (82)
Q Consensus 12 ~~qkVtV~G~v--dp~~vl~~l~ktgK~a 38 (82)
..++|++||++ +.+++.+.+++.|-++
T Consensus 234 ~g~~~v~TG~l~~~R~e~~~~~~~~G~~v 262 (313)
T PRK06063 234 QGMRVALSAEVSRTHEELVERILHAGLAY 262 (313)
T ss_pred CCCEEEEecCCCCCHHHHHHHHHHcCCEe
Confidence 57899999996 7888888888888655
No 101
>PF12392 DUF3656: Collagenase ; InterPro: IPR020988 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This domain is found in a number of proteins belonging to the MEROPS peptidase family U32. Peptidase family U32 contains endopeptidases, including collagenase, from bacteria.
Probab=21.42 E-value=1.9e+02 Score=18.34 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=21.8
Q ss_pred eCCCCeEEEEee----------cCHHHHHHHHHHhCCce
Q 048554 10 DMAVQKVTLMSW----------EDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 10 D~~~qkVtV~G~----------vdp~~vl~~l~ktgK~a 38 (82)
|.....|+|+|. ++.+.|.+.|.|+|...
T Consensus 44 d~~~~~v~~~~~~~~e~A~~~p~~~e~i~~ql~KlG~T~ 82 (122)
T PF12392_consen 44 DEDGNSVEVTSEIVPEPAKKRPLDEERIRKQLSKLGNTP 82 (122)
T ss_pred ECCCcEEEEEecCCchhhCCCccCHHHHHHHHHhhCCCc
Confidence 356667887763 57889999999999643
No 102
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=21.37 E-value=55 Score=19.43 Aligned_cols=20 Identities=5% Similarity=0.197 Sum_probs=15.3
Q ss_pred eEEEEeCCCCeEEEEeecCH
Q 048554 5 DNNDIDMAVQKVTLMSWEDQ 24 (82)
Q Consensus 5 ~~v~vD~~~qkVtV~G~vdp 24 (82)
++++|..+.+.++|+|.-..
T Consensus 21 edI~v~v~~~~L~I~g~~~~ 40 (83)
T cd06526 21 EELKVKVSDNKLVVEGKHEE 40 (83)
T ss_pred HHcEEEEECCEEEEEEEEee
Confidence 45777778899999997443
No 103
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.16 E-value=1.1e+02 Score=22.51 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.2
Q ss_pred cCHHHHHHHHHHhCCceEEccCCC
Q 048554 22 EDQKKVLKIVKKTGRSVKLWPYSY 45 (82)
Q Consensus 22 vdp~~vl~~l~ktgK~a~~~~~p~ 45 (82)
=||+++++.|++.|-+..+|-.|.
T Consensus 74 Pdp~~mi~~Lh~~G~k~v~~v~P~ 97 (292)
T cd06595 74 PDPEKLLQDLHDRGLKVTLNLHPA 97 (292)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCC
Confidence 689999999999999999886664
No 104
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=21.13 E-value=64 Score=19.63 Aligned_cols=17 Identities=0% Similarity=0.018 Sum_probs=14.5
Q ss_pred eEEEEeCCCCeEEEEee
Q 048554 5 DNNDIDMAVQKVTLMSW 21 (82)
Q Consensus 5 ~~v~vD~~~qkVtV~G~ 21 (82)
++++|+..++.++|.|.
T Consensus 21 edi~V~v~~~~L~I~g~ 37 (84)
T cd06498 21 EELKVKVLGDFIEIHGK 37 (84)
T ss_pred HHeEEEEECCEEEEEEE
Confidence 46788888999999997
No 105
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=20.83 E-value=1.6e+02 Score=24.23 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=29.6
Q ss_pred EEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEc
Q 048554 7 NDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLW 41 (82)
Q Consensus 7 v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~ 41 (82)
+++|.+++.|||.+-+--.+|.+.|.+.|......
T Consensus 92 l~iD~~~~tVtV~AG~~l~~L~~~L~~~Glal~~~ 126 (557)
T TIGR01677 92 VAVDATAMTVTVESGMSLRELIVEAEKAGLALPYA 126 (557)
T ss_pred EEEeCCCCEEEECCCCcHHHHHHHHHHcCCEeccC
Confidence 57888889999999999999999999999654433
No 106
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=20.81 E-value=66 Score=21.25 Aligned_cols=20 Identities=10% Similarity=0.239 Sum_probs=16.7
Q ss_pred eEEEEeCCCCeEEEEeecCH
Q 048554 5 DNNDIDMAVQKVTLMSWEDQ 24 (82)
Q Consensus 5 ~~v~vD~~~qkVtV~G~vdp 24 (82)
++++|....+.+||+|....
T Consensus 64 edI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 64 EDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred HHeEEEEECCEEEEEEEecc
Confidence 46888889999999998765
No 107
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]
Probab=20.75 E-value=43 Score=24.87 Aligned_cols=9 Identities=56% Similarity=0.811 Sum_probs=7.4
Q ss_pred CCCCCceee
Q 048554 73 DENPHACSL 81 (82)
Q Consensus 73 DeNpnaCsI 81 (82)
++|||||-+
T Consensus 101 ~~NP~Aal~ 109 (228)
T KOG2586|consen 101 QENPNAALL 109 (228)
T ss_pred ccCCcceEE
Confidence 589999964
No 108
>PRK01191 rpl24p 50S ribosomal protein L24P; Validated
Probab=20.46 E-value=1e+02 Score=20.65 Aligned_cols=15 Identities=7% Similarity=0.206 Sum_probs=12.8
Q ss_pred EEEeCCCCeEEEEee
Q 048554 7 NDIDMAVQKVTLMSW 21 (82)
Q Consensus 7 v~vD~~~qkVtV~G~ 21 (82)
+.||.+.++|+|.|.
T Consensus 67 ~~V~~~~~~V~VeGv 81 (120)
T PRK01191 67 VEVDLKRGRIYVEGV 81 (120)
T ss_pred EEEEcCCCEEEEeCc
Confidence 467889999999995
No 109
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=20.40 E-value=1.8e+02 Score=25.97 Aligned_cols=42 Identities=10% Similarity=0.175 Sum_probs=36.0
Q ss_pred CCeeEEEEeCCCCeEEE--EeecCHHHHHHHHHHhCCceEEccC
Q 048554 2 IEVDNNDIDMAVQKVTL--MSWEDQKKVLKIVKKTGRSVKLWPY 43 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV--~G~vdp~~vl~~l~ktgK~a~~~~~ 43 (82)
+||.++++++.++.-+| .-.++++.+.+.|+-.|..+++...
T Consensus 20 ~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied~gf~~~~~~~ 63 (951)
T KOG0207|consen 20 PGVQKIEVSLAQKRANVSYDNIVSPESIKETIEDMGFEASLLSD 63 (951)
T ss_pred CCceeEEEEeccccceEEEeeccCHHHHHHHhhcccceeeeccc
Confidence 69999999998876555 5559999999999999999998754
No 110
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=20.36 E-value=1.7e+02 Score=19.87 Aligned_cols=32 Identities=6% Similarity=0.044 Sum_probs=25.0
Q ss_pred CCCeEEEEeecCHHHHHHHHHHhCCceEEccC
Q 048554 12 AVQKVTLMSWEDQKKVLKIVKKTGRSVKLWPY 43 (82)
Q Consensus 12 ~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~~ 43 (82)
++++.+++|..++..|-+.|++==+.-.+.+.
T Consensus 76 ~~~~lii~G~~~~~~i~~~L~~yI~~yVlC~~ 107 (138)
T PRK03988 76 EGGRLILQGKFSPRVINEKIDRYVKEYVICPE 107 (138)
T ss_pred cCCEEEEEEeeCHHHHHHHHHHHHHhcEECCC
Confidence 56999999999999999998865545555444
No 111
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=20.34 E-value=63 Score=20.07 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=16.0
Q ss_pred eEEEEeCCCCeEEEEeecCH
Q 048554 5 DNNDIDMAVQKVTLMSWEDQ 24 (82)
Q Consensus 5 ~~v~vD~~~qkVtV~G~vdp 24 (82)
++++|...++.++|+|.-..
T Consensus 22 edI~V~v~~~~L~I~ger~~ 41 (87)
T cd06482 22 DQVKVKVKDGKVQVSAEREN 41 (87)
T ss_pred HHeEEEEECCEEEEEEEEec
Confidence 35788888999999998543
No 112
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=20.27 E-value=60 Score=20.41 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=15.3
Q ss_pred eEEEEeCCCCeEEEEeecC
Q 048554 5 DNNDIDMAVQKVTLMSWED 23 (82)
Q Consensus 5 ~~v~vD~~~qkVtV~G~vd 23 (82)
++++|....++++|.|.-.
T Consensus 29 EDL~Vkv~~~~L~V~Gkh~ 47 (91)
T cd06480 29 EELTVKTKDGFVEVSGKHE 47 (91)
T ss_pred HHcEEEEECCEEEEEEEEC
Confidence 4677888899999999744
No 113
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=20.01 E-value=2.5e+02 Score=25.17 Aligned_cols=43 Identities=16% Similarity=0.379 Sum_probs=37.2
Q ss_pred CCCeeEEEEeCCCCeEEEEe---ecCHHHHHHHHHHhCCceEEccC
Q 048554 1 FIEVDNNDIDMAVQKVTLMS---WEDQKKVLKIVKKTGRSVKLWPY 43 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G---~vdp~~vl~~l~ktgK~a~~~~~ 43 (82)
++||.++.+|....++.|.= ..-|-.+++.|..+|-.+.+.+.
T Consensus 171 l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~~~ 216 (951)
T KOG0207|consen 171 LRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVRPY 216 (951)
T ss_pred ccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceeeec
Confidence 47999999999999999863 38899999999999988887764
Done!