Query 048554
Match_columns 82
No_of_seqs 105 out of 618
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 18:26:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048554.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048554hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iwl_A Copper transport protei 98.4 7E-07 2.4E-11 50.9 6.0 41 2-43 27-67 (68)
2 1cc8_A Protein (metallochapero 98.3 2.6E-06 8.9E-11 48.6 6.1 40 3-42 32-71 (73)
3 2crl_A Copper chaperone for su 98.1 1.9E-05 6.5E-10 48.5 7.3 44 1-44 43-86 (98)
4 4a4j_A Pacszia, cation-transpo 98.0 2E-05 6.9E-10 44.0 5.8 41 1-41 27-69 (69)
5 3fry_A Probable copper-exporti 97.7 6.7E-05 2.3E-09 42.9 5.0 42 2-44 30-71 (73)
6 2xmm_A SSR2857 protein, ATX1; 97.6 0.00014 4.7E-09 38.9 4.7 37 2-38 27-63 (64)
7 3dxs_X Copper-transporting ATP 97.6 9.4E-05 3.2E-09 41.8 4.2 42 1-42 27-71 (74)
8 2roe_A Heavy metal binding pro 97.5 0.00013 4.6E-09 40.0 4.3 40 1-40 25-64 (66)
9 1qup_A Superoxide dismutase 1 97.4 0.00056 1.9E-08 48.2 7.0 43 1-43 30-72 (222)
10 2k2p_A Uncharacterized protein 97.2 0.00064 2.2E-08 40.4 4.9 37 2-38 48-84 (85)
11 1fvq_A Copper-transporting ATP 97.2 0.00081 2.8E-08 36.7 5.0 42 1-42 27-70 (72)
12 1q8l_A Copper-transporting ATP 97.1 0.0019 6.4E-08 37.2 6.3 45 1-45 34-81 (84)
13 1jk9_B CCS, copper chaperone f 97.1 0.0011 3.8E-08 47.5 5.9 43 1-43 31-73 (249)
14 2l3m_A Copper-ION-binding prot 97.0 0.0018 6E-08 35.3 5.1 38 1-38 30-70 (71)
15 1cpz_A Protein (COPZ); copper 97.0 0.0038 1.3E-07 33.4 6.2 40 1-40 25-67 (68)
16 2g9o_A Copper-transporting ATP 96.9 0.0019 6.4E-08 38.2 5.2 46 1-46 28-79 (90)
17 1aw0_A Menkes copper-transport 96.9 0.0031 1.1E-07 34.2 5.7 40 1-40 28-70 (72)
18 2xmw_A PACS-N, cation-transpor 96.9 0.005 1.7E-07 33.2 6.2 40 1-40 28-69 (71)
19 1osd_A MERP, hypothetical prot 96.9 0.006 2E-07 33.0 6.5 40 1-40 28-70 (72)
20 3cjk_B Copper-transporting ATP 96.8 0.0065 2.2E-07 33.4 6.3 42 1-42 27-71 (75)
21 2qif_A Copper chaperone COPZ; 96.7 0.0045 1.5E-07 32.6 5.1 38 1-38 27-67 (69)
22 1opz_A Potential copper-transp 96.7 0.0032 1.1E-07 34.3 4.6 41 1-41 31-74 (76)
23 1p6t_A Potential copper-transp 96.7 0.0032 1.1E-07 39.4 5.1 42 1-42 99-143 (151)
24 2ew9_A Copper-transporting ATP 96.6 0.0056 1.9E-07 38.0 5.7 41 1-41 105-148 (149)
25 2kt2_A Mercuric reductase; nme 96.6 0.0077 2.6E-07 32.5 5.5 40 1-40 25-66 (69)
26 1yg0_A COP associated protein; 96.4 0.012 4.2E-07 31.1 5.9 38 1-38 26-65 (66)
27 1kvi_A Copper-transporting ATP 96.3 0.01 3.6E-07 33.0 5.4 42 1-42 33-77 (79)
28 1yjr_A Copper-transporting ATP 96.3 0.01 3.4E-07 32.3 5.0 40 1-40 29-71 (75)
29 2ldi_A Zinc-transporting ATPas 96.1 0.013 4.4E-07 31.2 4.8 38 1-38 28-68 (71)
30 1y3j_A Copper-transporting ATP 96.1 0.012 4.3E-07 32.6 4.9 42 1-42 28-72 (77)
31 2kyz_A Heavy metal binding pro 96.0 0.008 2.7E-07 32.7 3.7 36 3-39 27-62 (67)
32 1mwy_A ZNTA; open-faced beta-s 96.0 0.038 1.3E-06 30.2 6.3 40 1-40 28-68 (73)
33 1jww_A Potential copper-transp 95.9 0.012 4.1E-07 32.5 4.2 43 1-43 28-73 (80)
34 2kkh_A Putative heavy metal tr 95.8 0.064 2.2E-06 31.3 7.4 43 1-43 41-86 (95)
35 2rop_A Copper-transporting ATP 95.7 0.027 9.4E-07 37.4 6.0 43 1-43 147-192 (202)
36 2ofg_X Zinc-transporting ATPas 95.2 0.058 2E-06 32.9 5.8 40 1-40 33-75 (111)
37 2aj0_A Probable cadmium-transp 95.2 0.017 5.8E-07 31.6 3.0 38 1-42 28-65 (71)
38 2ew9_A Copper-transporting ATP 92.4 0.36 1.2E-05 29.5 5.6 42 1-42 29-73 (149)
39 1p6t_A Potential copper-transp 86.2 1.3 4.5E-05 27.1 4.6 38 1-38 31-71 (151)
40 3j09_A COPA, copper-exporting 85.1 1.4 4.9E-05 35.2 5.3 39 1-39 27-68 (723)
41 2rop_A Copper-transporting ATP 82.7 1.9 6.6E-05 28.2 4.5 34 1-34 45-81 (202)
42 3bpd_A Uncharacterized protein 82.6 0.6 2.1E-05 29.7 1.7 37 2-38 32-76 (100)
43 2raq_A Conserved protein MTH88 82.3 0.8 2.8E-05 29.0 2.3 37 2-38 32-76 (97)
44 2x3d_A SSO6206; unknown functi 81.5 0.82 2.8E-05 28.9 2.1 37 2-38 31-75 (96)
45 2cpq_A FragIle X mental retard 69.9 16 0.00055 22.3 5.7 41 2-43 44-84 (91)
46 2qip_A Protein of unknown func 47.6 14 0.00047 23.9 2.7 32 13-44 110-142 (165)
47 2kgs_A Uncharacterized protein 44.0 11 0.00038 24.0 1.8 28 5-32 77-104 (132)
48 3mso_A Steroid delta-isomerase 43.9 19 0.00064 22.5 2.9 34 2-35 97-131 (143)
49 2e9h_A EIF-5, eukaryotic trans 40.6 42 0.0014 22.5 4.3 27 7-33 72-98 (157)
50 2cql_A OK/SW-CL.103, 60S ribos 37.5 11 0.00037 23.3 0.9 15 6-20 22-36 (100)
51 2k6g_A Replication factor C su 37.0 56 0.0019 20.1 4.2 28 11-38 33-63 (109)
52 3gzb_A Putative snoal-like pol 34.9 51 0.0018 22.1 3.9 31 1-31 120-151 (154)
53 3ge2_A Lipoprotein, putative; 34.4 32 0.0011 22.6 2.8 19 4-22 85-103 (130)
54 2wj5_A Heat shock protein beta 33.6 22 0.00075 21.3 1.8 22 2-23 20-43 (101)
55 2g2k_A EIF-5, eukaryotic trans 32.2 55 0.0019 22.2 3.8 26 8-33 66-91 (170)
56 2ebu_A Replication factor C su 30.9 57 0.0019 20.3 3.5 28 11-38 23-53 (112)
57 2ks0_A Uncharacterized protein 30.1 22 0.00075 20.8 1.3 15 9-23 44-58 (71)
58 2cok_A Poly [ADP-ribose] polym 29.2 70 0.0024 19.9 3.7 28 11-38 11-40 (113)
59 2d74_B Translation initiation 28.8 54 0.0019 21.6 3.3 26 7-34 75-100 (148)
60 2yvs_A Glycolate oxidase subun 28.7 42 0.0014 23.0 2.8 30 7-36 1-30 (219)
61 3pro_C Alpha-lytic protease; P 28.7 1.1E+02 0.0038 20.4 4.9 35 2-36 114-149 (166)
62 3q9p_A Heat shock protein beta 28.2 38 0.0013 19.5 2.2 20 5-24 21-40 (85)
63 1zps_A PRA-CH, phosphoribosyl- 27.6 1.3E+02 0.0046 19.7 5.3 38 4-43 24-61 (138)
64 3mgj_A Uncharacterized protein 27.0 89 0.003 20.0 4.0 45 15-59 50-102 (118)
65 1mp9_A Tata-binding protein; t 26.9 77 0.0026 21.6 3.9 22 11-32 155-176 (198)
66 3tsh_A Pollen allergen PHL P 4 26.0 92 0.0031 23.4 4.5 36 4-39 109-144 (500)
67 4dok_A Similarity to chalcone- 25.8 38 0.0013 23.3 2.2 36 3-38 28-65 (208)
68 2zkr_l 60S ribosomal protein L 25.7 44 0.0015 21.7 2.4 31 11-41 117-147 (148)
69 3flj_A Uncharacterized protein 25.5 52 0.0018 21.5 2.7 34 2-35 104-138 (155)
70 1wuz_A Pcdha4 protein, CNR-EC1 24.8 66 0.0022 19.0 2.9 22 6-27 48-69 (103)
71 1ais_A TBP, protein (tata-bind 23.8 97 0.0033 20.8 3.9 23 11-33 151-173 (182)
72 1ytb_A Protein (tata binding p 23.8 97 0.0033 20.8 3.9 23 11-33 147-169 (180)
73 2z8u_A Tata-box-binding protei 23.6 80 0.0027 21.4 3.5 23 11-33 155-177 (188)
74 3ami_A Zinc peptidase; alpha/b 23.3 69 0.0024 22.7 3.2 20 14-33 190-209 (445)
75 3aab_A Putative uncharacterize 22.6 35 0.0012 20.9 1.3 23 2-24 43-68 (123)
76 3eoq_A Putative zinc protease; 22.4 74 0.0025 22.2 3.2 20 14-33 183-202 (406)
77 2e3u_A PH-DIM2P, hypothetical 22.3 1.4E+02 0.0047 20.5 4.5 27 6-32 66-95 (219)
78 1lu4_A Soluble secreted antige 22.2 1.2E+02 0.004 17.1 3.7 28 7-34 104-134 (136)
79 2qsr_A Transcription-repair co 21.8 74 0.0025 21.0 3.0 37 3-41 81-123 (173)
80 2y1y_A Alpha-crystallin B chai 21.3 42 0.0015 19.4 1.5 22 2-23 15-38 (90)
81 1hr6_B Beta-MPP, mitochondrial 21.2 80 0.0027 22.2 3.2 19 15-33 190-208 (443)
82 3f8x_A Putative delta-5-3-keto 21.0 1E+02 0.0034 19.5 3.4 34 2-35 106-140 (148)
83 3amj_B Zinc peptidase inactive 20.1 88 0.003 21.7 3.2 21 13-33 189-209 (424)
84 1wwh_A Nucleoporin 35, nucleop 20.1 89 0.003 19.9 2.9 31 12-42 23-55 (119)
No 1
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=98.42 E-value=7e-07 Score=50.87 Aligned_cols=41 Identities=32% Similarity=0.376 Sum_probs=39.0
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEccC
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLWPY 43 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~~ 43 (82)
+|| ++++|+..++++|++.++++.|+++|++.|..+++|+.
T Consensus 27 ~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~~ 67 (68)
T 3iwl_A 27 GGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGL 67 (68)
T ss_dssp CSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTCSCEEEEEC
T ss_pred CCe-EEEEEcCCCEEEEEecCCHHHHHHHHHHcCCceEecCC
Confidence 799 99999999999999999999999999999999999863
No 2
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=98.28 E-value=2.6e-06 Score=48.61 Aligned_cols=40 Identities=28% Similarity=0.315 Sum_probs=38.3
Q ss_pred CeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEcc
Q 048554 3 EVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLWP 42 (82)
Q Consensus 3 GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~ 42 (82)
||.++.+|+..++++|++.++++.|+++|+++|..+++|.
T Consensus 32 GV~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (73)
T 1cc8_A 32 DVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRSGK 71 (73)
T ss_dssp SEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEEEEE
T ss_pred CceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCCceeee
Confidence 9999999999999999999999999999999999998874
No 3
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.07 E-value=1.9e-05 Score=48.48 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=40.8
Q ss_pred CCCeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEccCC
Q 048554 1 FIEVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLWPYS 44 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~~p 44 (82)
++||.++.+|+..++++|++.++++.|+++|+++|..+.+|...
T Consensus 43 l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~~Gy~~~~~~~~ 86 (98)
T 2crl_A 43 VAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMG 86 (98)
T ss_dssp CTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEESC
T ss_pred CCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCceEEccCC
Confidence 47999999999999999999999999999999999999998653
No 4
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=97.99 E-value=2e-05 Score=44.00 Aligned_cols=41 Identities=10% Similarity=0.226 Sum_probs=37.5
Q ss_pred CCCeeEEEEeCCCCeEEEE--eecCHHHHHHHHHHhCCceEEc
Q 048554 1 FIEVDNNDIDMAVQKVTLM--SWEDQKKVLKIVKKTGRSVKLW 41 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~--G~vdp~~vl~~l~ktgK~a~~~ 41 (82)
.+||.++.+|+..++++|+ +.++++.|+++|++.|..+++.
T Consensus 27 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~~ 69 (69)
T 4a4j_A 27 VPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARVL 69 (69)
T ss_dssp STTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEEEEC
T ss_pred CCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCceEeC
Confidence 4799999999999999999 7899999999999999988763
No 5
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=97.72 E-value=6.7e-05 Score=42.86 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=38.7
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEccCC
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLWPYS 44 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~~p 44 (82)
+||.++.+|+..++++|+.. +++.|+++|++.|-.+++++..
T Consensus 30 ~gv~~~~v~~~~~~~~v~~~-~~~~i~~~i~~~Gy~~~~~~~~ 71 (73)
T 3fry_A 30 AGAKVEKVDLNEAVVAGNKE-DVDKYIKAVEAAGYQAKLRSSA 71 (73)
T ss_dssp TTCEEEEECSSEEEEEEEGG-GHHHHHHHHHHTTCEEEECCSS
T ss_pred CCcEEEEEEccCCEEEEEEC-CHHHHHHHHHHcCCceEecCcc
Confidence 59999999999999999998 9999999999999999987643
No 6
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=97.58 E-value=0.00014 Score=38.93 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=34.2
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCce
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a 38 (82)
+||.++.+|+..++++|.+.++++.|.+.|++.|-.+
T Consensus 27 ~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~G~~~ 63 (64)
T 2xmm_A 27 DAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEV 63 (64)
T ss_dssp CTTCEEEECTTTCEEEEECSSCHHHHHHHHHHTTCCC
T ss_pred CCcEEEEEEecCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence 6999999999999999999899999999999999654
No 7
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=97.58 E-value=9.4e-05 Score=41.81 Aligned_cols=42 Identities=5% Similarity=0.136 Sum_probs=37.8
Q ss_pred CCCeeEEEEeCCCCeEEEEe---ecCHHHHHHHHHHhCCceEEcc
Q 048554 1 FIEVDNNDIDMAVQKVTLMS---WEDQKKVLKIVKKTGRSVKLWP 42 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G---~vdp~~vl~~l~ktgK~a~~~~ 42 (82)
.+||.++.+|+..++++|+. .++++.|+++|++.|..++++.
T Consensus 27 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (74)
T 3dxs_X 27 VNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEILA 71 (74)
T ss_dssp STTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEEEE
T ss_pred CCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEEcc
Confidence 47999999999999999974 3799999999999999998875
No 8
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=97.53 E-value=0.00013 Score=39.98 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=36.3
Q ss_pred CCCeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEE
Q 048554 1 FIEVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKL 40 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~ 40 (82)
.+||.++.+|+..++++|.+.++++.|.+.|+++|-.+..
T Consensus 25 ~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~ 64 (66)
T 2roe_A 25 VPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEV 64 (66)
T ss_dssp STTCCCEEECSSSCBEEECSCCCHHHHHHHHHTTTCEEEE
T ss_pred CCCeEEEEEEeCCCEEEECCCCCHHHHHHHHHHcCCCcEe
Confidence 4799999999999999998889999999999999987754
No 9
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=97.38 E-value=0.00056 Score=48.19 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=40.3
Q ss_pred CCCeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEccC
Q 048554 1 FIEVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLWPY 43 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~~ 43 (82)
.+||+++++|+..++++|++.+++++|+++|+++|..+.++..
T Consensus 30 l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~~~~~ 72 (222)
T 1qup_A 30 VPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGA 72 (222)
T ss_dssp CTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEECC
T ss_pred CCCeeEEEEEcCCCEEEEeccCCHHHHHHHHHHcCCccccccC
Confidence 4799999999999999999999999999999999999999865
No 10
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=97.20 E-value=0.00064 Score=40.40 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=34.3
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCce
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a 38 (82)
+||.++.+|+..++++|++.++++.|++.|++.|-.+
T Consensus 48 ~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~~Gy~~ 84 (85)
T 2k2p_A 48 VPGAAVHADPASRTVVVGGVSDAAHIAEIITAAGYTP 84 (85)
T ss_dssp STTCEEEEETTTTEEEEESCCCHHHHHHHHHHTTCCC
T ss_pred CCeeEEEEECCCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence 6999999999999999999999999999999999654
No 11
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=97.19 E-value=0.00081 Score=36.66 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=37.0
Q ss_pred CCCeeEEEEeCCCCeEEEEe--ecCHHHHHHHHHHhCCceEEcc
Q 048554 1 FIEVDNNDIDMAVQKVTLMS--WEDQKKVLKIVKKTGRSVKLWP 42 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G--~vdp~~vl~~l~ktgK~a~~~~ 42 (82)
.+||.++.+|+..++++|.. .++++.|.+.|++.|-.+.+++
T Consensus 27 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~~ 70 (72)
T 1fvq_A 27 LKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR 70 (72)
T ss_dssp SSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCCEEEEE
T ss_pred CCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCceEEcc
Confidence 37999999999999999984 4788999999999999988875
No 12
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=97.12 E-value=0.0019 Score=37.18 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=39.0
Q ss_pred CCCeeEEEEeCCCCeEEEEee---cCHHHHHHHHHHhCCceEEccCCC
Q 048554 1 FIEVDNNDIDMAVQKVTLMSW---EDQKKVLKIVKKTGRSVKLWPYSY 45 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~---vdp~~vl~~l~ktgK~a~~~~~p~ 45 (82)
.+||.++.+|+..++++|+.. +++..|.+.|++.|-.+.+++.+.
T Consensus 34 ~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~ 81 (84)
T 1q8l_A 34 LQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKKQPK 81 (84)
T ss_dssp CTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECSCCTT
T ss_pred CCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEecCCcc
Confidence 479999999999999999863 688999999999999998877653
No 13
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1
Probab=97.07 E-value=0.0011 Score=47.54 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=39.9
Q ss_pred CCCeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEccC
Q 048554 1 FIEVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLWPY 43 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~~ 43 (82)
.+||.++++|+..++++|.+.++++.|+++|+++|..+.+++.
T Consensus 31 l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~ 73 (249)
T 1jk9_B 31 VPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGA 73 (249)
T ss_dssp CTTEEEEEEETTTTEEEEEESSCHHHHHHHHHTTTCCCEEEEE
T ss_pred cCCeeEEEEEcCCCeEEEecCCCHHHHHHHHHHhCCCcccccC
Confidence 4799999999999999999999999999999999999988754
No 14
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=97.00 E-value=0.0018 Score=35.26 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=32.9
Q ss_pred CCCeeEEEEeCCCCeEEEE---eecCHHHHHHHHHHhCCce
Q 048554 1 FIEVDNNDIDMAVQKVTLM---SWEDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~---G~vdp~~vl~~l~ktgK~a 38 (82)
.+||.++.+|+..++++|. +.++++.|++.|++.|-.+
T Consensus 30 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 70 (71)
T 2l3m_A 30 LNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDV 70 (71)
T ss_dssp STTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCEE
T ss_pred CCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence 3699999999999999997 3478899999999998654
No 15
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=96.95 E-value=0.0038 Score=33.38 Aligned_cols=40 Identities=8% Similarity=0.150 Sum_probs=34.8
Q ss_pred CCCeeEEEEeCCCCeEEEEee---cCHHHHHHHHHHhCCceEE
Q 048554 1 FIEVDNNDIDMAVQKVTLMSW---EDQKKVLKIVKKTGRSVKL 40 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~---vdp~~vl~~l~ktgK~a~~ 40 (82)
.+||.++.+|+..++++|... ++++.+.+.|++.|-.+++
T Consensus 25 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 67 (68)
T 1cpz_A 25 ISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV 67 (68)
T ss_dssp STTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEE
T ss_pred CCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCccc
Confidence 369999999999999999853 6889999999999987765
No 16
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=96.93 E-value=0.0019 Score=38.17 Aligned_cols=46 Identities=7% Similarity=-0.050 Sum_probs=38.0
Q ss_pred CCCeeEEEEeCCCCeEEEEe---ecCHHHHHHHHHHh---CCceEEccCCCC
Q 048554 1 FIEVDNNDIDMAVQKVTLMS---WEDQKKVLKIVKKT---GRSVKLWPYSYN 46 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G---~vdp~~vl~~l~kt---gK~a~~~~~p~~ 46 (82)
.+||.++.+|+..++++|+. .+++..|++.|++. |-.+.++..+..
T Consensus 28 ~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~g~Ggy~~~~~~~~~~ 79 (90)
T 2g9o_A 28 LQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITSEVEI 79 (90)
T ss_dssp CTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTTSTTTCEEECCCCC--
T ss_pred CCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhccCCCeEEEEeCCCcc
Confidence 47999999999999999974 47889999999999 588988876543
No 17
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=96.91 E-value=0.0031 Score=34.20 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=34.8
Q ss_pred CCCeeEEEEeCCCCeEEEEee---cCHHHHHHHHHHhCCceEE
Q 048554 1 FIEVDNNDIDMAVQKVTLMSW---EDQKKVLKIVKKTGRSVKL 40 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~---vdp~~vl~~l~ktgK~a~~ 40 (82)
.+||.++.+|+..++++|... ++.+.|++.|++.|-.+.+
T Consensus 28 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 70 (72)
T 1aw0_A 28 KPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATL 70 (72)
T ss_dssp STTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEE
T ss_pred CCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCCcEe
Confidence 379999999999999999864 6889999999999987765
No 18
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=96.87 E-value=0.005 Score=33.17 Aligned_cols=40 Identities=10% Similarity=0.248 Sum_probs=33.5
Q ss_pred CCCeeEEEEeCCCCeEEEEee--cCHHHHHHHHHHhCCceEE
Q 048554 1 FIEVDNNDIDMAVQKVTLMSW--EDQKKVLKIVKKTGRSVKL 40 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~--vdp~~vl~~l~ktgK~a~~ 40 (82)
.+||.++.+|+..++++|... ++++.|.+.|++.|-.+.+
T Consensus 28 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~ 69 (71)
T 2xmw_A 28 VPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV 69 (71)
T ss_dssp STTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCEEEE
T ss_pred CCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCCcee
Confidence 379999999999999999743 7889999999999987654
No 19
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=96.86 E-value=0.006 Score=33.03 Aligned_cols=40 Identities=13% Similarity=0.153 Sum_probs=34.6
Q ss_pred CCCeeEEEEeCCCCeEEEEee---cCHHHHHHHHHHhCCceEE
Q 048554 1 FIEVDNNDIDMAVQKVTLMSW---EDQKKVLKIVKKTGRSVKL 40 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~---vdp~~vl~~l~ktgK~a~~ 40 (82)
.+||.++.+|+..++++|... ++.+.|.+.|++.|-.+.+
T Consensus 28 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 70 (72)
T 1osd_A 28 VEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSV 70 (72)
T ss_dssp STTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEE
T ss_pred CCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence 379999999999999999753 6889999999999987655
No 20
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=96.77 E-value=0.0065 Score=33.44 Aligned_cols=42 Identities=10% Similarity=0.189 Sum_probs=36.2
Q ss_pred CCCeeEEEEeCCCCeEEEEe---ecCHHHHHHHHHHhCCceEEcc
Q 048554 1 FIEVDNNDIDMAVQKVTLMS---WEDQKKVLKIVKKTGRSVKLWP 42 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G---~vdp~~vl~~l~ktgK~a~~~~ 42 (82)
.+||.++.+|+..++++|.. .++++.|.+.|++.|-.+.+..
T Consensus 27 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (75)
T 3cjk_B 27 VNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN 71 (75)
T ss_dssp STTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEeec
Confidence 37999999999999999975 3688999999999998887654
No 21
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=96.70 E-value=0.0045 Score=32.64 Aligned_cols=38 Identities=16% Similarity=0.204 Sum_probs=32.5
Q ss_pred CCCeeEEEEeCCCCeEEEEe---ecCHHHHHHHHHHhCCce
Q 048554 1 FIEVDNNDIDMAVQKVTLMS---WEDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G---~vdp~~vl~~l~ktgK~a 38 (82)
.+||.++.+|+..++++|.. .++++.|.+.|++.|-.+
T Consensus 27 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 67 (69)
T 2qif_A 27 LDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV 67 (69)
T ss_dssp STTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred CCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence 47999999999999999973 478899999999988654
No 22
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=96.69 E-value=0.0032 Score=34.28 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=35.0
Q ss_pred CCCeeEEEEeCCCCeEEEE---eecCHHHHHHHHHHhCCceEEc
Q 048554 1 FIEVDNNDIDMAVQKVTLM---SWEDQKKVLKIVKKTGRSVKLW 41 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~---G~vdp~~vl~~l~ktgK~a~~~ 41 (82)
.+||.++.+|+..++++|. +.++++.+.+.|++.|-.+.++
T Consensus 31 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~ 74 (76)
T 1opz_A 31 MPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVIE 74 (76)
T ss_dssp STTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEECC
T ss_pred CCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceecC
Confidence 4799999999999999997 3478899999999999877654
No 23
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=96.69 E-value=0.0032 Score=39.41 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=37.5
Q ss_pred CCCeeEEEEeCCCCeEEEE---eecCHHHHHHHHHHhCCceEEcc
Q 048554 1 FIEVDNNDIDMAVQKVTLM---SWEDQKKVLKIVKKTGRSVKLWP 42 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~---G~vdp~~vl~~l~ktgK~a~~~~ 42 (82)
.+||.++.+|+..++++|+ +.+++..|++.|++.|..+.++.
T Consensus 99 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 143 (151)
T 1p6t_A 99 IEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKG 143 (151)
T ss_dssp SSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESC
T ss_pred CCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEcC
Confidence 4799999999999999998 45899999999999999988764
No 24
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=96.58 E-value=0.0056 Score=38.00 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=35.8
Q ss_pred CCCeeEEEEeCCCCeEEEEee---cCHHHHHHHHHHhCCceEEc
Q 048554 1 FIEVDNNDIDMAVQKVTLMSW---EDQKKVLKIVKKTGRSVKLW 41 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~---vdp~~vl~~l~ktgK~a~~~ 41 (82)
.+||.++.+|+..++++|+.. ++++.|++.|++.|-.+.++
T Consensus 105 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~ 148 (149)
T 2ew9_A 105 TNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLA 148 (149)
T ss_dssp SSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTCEEECC
T ss_pred CCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCCceEec
Confidence 479999999999999999753 68899999999999887654
No 25
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=96.56 E-value=0.0077 Score=32.50 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=34.4
Q ss_pred CCCeeEEEEeCCCCeEEEEee--cCHHHHHHHHHHhCCceEE
Q 048554 1 FIEVDNNDIDMAVQKVTLMSW--EDQKKVLKIVKKTGRSVKL 40 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~--vdp~~vl~~l~ktgK~a~~ 40 (82)
.+||.++.+|+..++++|... .+++.|++.|++.|-.+.+
T Consensus 25 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~ 66 (69)
T 2kt2_A 25 VPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKATL 66 (69)
T ss_dssp STTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSEEEC
T ss_pred CCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCceEe
Confidence 379999999999999999743 6889999999999987754
No 26
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=96.45 E-value=0.012 Score=31.07 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=32.2
Q ss_pred CCCeeEEEEeCCCCeEEEEee--cCHHHHHHHHHHhCCce
Q 048554 1 FIEVDNNDIDMAVQKVTLMSW--EDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~--vdp~~vl~~l~ktgK~a 38 (82)
.+||.++.+|+..++++|... .+++.|.+.|++.|-.+
T Consensus 26 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~ 65 (66)
T 1yg0_A 26 IEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQEV 65 (66)
T ss_dssp SSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred CCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence 369999999999999999753 57889999999988643
No 27
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=96.35 E-value=0.01 Score=32.98 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=35.8
Q ss_pred CCCeeEEEEeCCCCeEEEEee---cCHHHHHHHHHHhCCceEEcc
Q 048554 1 FIEVDNNDIDMAVQKVTLMSW---EDQKKVLKIVKKTGRSVKLWP 42 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~---vdp~~vl~~l~ktgK~a~~~~ 42 (82)
.+||.++.+|+..++++|... +++..|.+.|++.|-.+.+.+
T Consensus 33 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 77 (79)
T 1kvi_A 33 VNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN 77 (79)
T ss_dssp SSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCCEEECC
T ss_pred CCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCceEecC
Confidence 379999999999999999753 678999999999998877653
No 28
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=96.30 E-value=0.01 Score=32.34 Aligned_cols=40 Identities=10% Similarity=0.122 Sum_probs=33.8
Q ss_pred CCCeeEEEEeCCCCeEEEEee---cCHHHHHHHHHHhCCceEE
Q 048554 1 FIEVDNNDIDMAVQKVTLMSW---EDQKKVLKIVKKTGRSVKL 40 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~---vdp~~vl~~l~ktgK~a~~ 40 (82)
.+||.++.+|+..++++|... +++..|.+.|++.|-.+.+
T Consensus 29 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~ 71 (75)
T 1yjr_A 29 HRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSL 71 (75)
T ss_dssp STTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCEEEE
T ss_pred CCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcee
Confidence 379999999999999999754 5678899999999977654
No 29
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=96.13 E-value=0.013 Score=31.15 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=32.2
Q ss_pred CCCeeEEEEeCCCCeEEEEe---ecCHHHHHHHHHHhCCce
Q 048554 1 FIEVDNNDIDMAVQKVTLMS---WEDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G---~vdp~~vl~~l~ktgK~a 38 (82)
.+||.++.+|+..++++|.. .++.+.+.+.|++.|-.+
T Consensus 28 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 68 (71)
T 2ldi_A 28 LKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTL 68 (71)
T ss_dssp CSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCEE
T ss_pred CCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence 47999999999999999974 467788999999888655
No 30
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=96.13 E-value=0.012 Score=32.58 Aligned_cols=42 Identities=5% Similarity=-0.012 Sum_probs=36.0
Q ss_pred CCCeeEEEEeCCCCeEEEEee---cCHHHHHHHHHHhCCceEEcc
Q 048554 1 FIEVDNNDIDMAVQKVTLMSW---EDQKKVLKIVKKTGRSVKLWP 42 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~---vdp~~vl~~l~ktgK~a~~~~ 42 (82)
.+||.++.+|+..++++|... +++..|.+.|++.|-.+.++.
T Consensus 28 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 72 (77)
T 1y3j_A 28 EEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVIE 72 (77)
T ss_dssp SSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSCEEEES
T ss_pred CCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEECC
Confidence 379999999999999999753 688899999999998887653
No 31
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=96.05 E-value=0.008 Score=32.72 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=31.4
Q ss_pred CeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceE
Q 048554 3 EVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVK 39 (82)
Q Consensus 3 GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~ 39 (82)
||.++.+|+..++++|....+ ..|.+.|++.|-.+.
T Consensus 27 gv~~~~v~~~~~~~~v~~~~~-~~i~~~i~~~Gy~~~ 62 (67)
T 2kyz_A 27 GVKNYEVSVEEKKVVVETENL-DSVLKKLEEIDYPVE 62 (67)
T ss_dssp TCSEEEEETTTTEEEEECSCH-HHHHHHHHTTTCCCC
T ss_pred CCeEEEEECCCCEEEEEECCH-HHHHHHHHHcCCcee
Confidence 899999999999999987765 889999999997654
No 32
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=95.95 E-value=0.038 Score=30.21 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=32.6
Q ss_pred CCCeeEEEEeCCCCeEEEEeec-CHHHHHHHHHHhCCceEE
Q 048554 1 FIEVDNNDIDMAVQKVTLMSWE-DQKKVLKIVKKTGRSVKL 40 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~v-dp~~vl~~l~ktgK~a~~ 40 (82)
.+||.++.+|+..++++|+..- ..+.|.+.|++.|-.+..
T Consensus 28 ~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~~~~ 68 (73)
T 1mwy_A 28 LAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRD 68 (73)
T ss_dssp SSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCEEEE
T ss_pred CCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCcccc
Confidence 3799999999999999998542 367788889999977653
No 33
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=95.94 E-value=0.012 Score=32.49 Aligned_cols=43 Identities=23% Similarity=0.214 Sum_probs=36.8
Q ss_pred CCCeeEEEEeCCCCeEEEEe---ecCHHHHHHHHHHhCCceEEccC
Q 048554 1 FIEVDNNDIDMAVQKVTLMS---WEDQKKVLKIVKKTGRSVKLWPY 43 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G---~vdp~~vl~~l~ktgK~a~~~~~ 43 (82)
.+||.++.+|+..++++|.- .+++..+.+.|.+.|-.+.+++.
T Consensus 28 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~ 73 (80)
T 1jww_A 28 IEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGE 73 (80)
T ss_dssp STTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSEEEECCS
T ss_pred CCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCeEEecCc
Confidence 47999999999999999963 46889999999999988887754
No 34
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=95.84 E-value=0.064 Score=31.32 Aligned_cols=43 Identities=7% Similarity=0.028 Sum_probs=37.0
Q ss_pred CCCeeEEEEeCCCCeEEEEee---cCHHHHHHHHHHhCCceEEccC
Q 048554 1 FIEVDNNDIDMAVQKVTLMSW---EDQKKVLKIVKKTGRSVKLWPY 43 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~---vdp~~vl~~l~ktgK~a~~~~~ 43 (82)
.+||.++.+|+..++++|... +++..|.+.|++.|-.+.+++.
T Consensus 41 ~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 86 (95)
T 2kkh_A 41 LDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVRVN 86 (95)
T ss_dssp SSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCC
T ss_pred CCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEecC
Confidence 379999999999999999854 5788999999999998887654
No 35
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=95.73 E-value=0.027 Score=37.39 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=36.6
Q ss_pred CCCeeEEEEeCCCCeEEEEe---ecCHHHHHHHHHHhCCceEEccC
Q 048554 1 FIEVDNNDIDMAVQKVTLMS---WEDQKKVLKIVKKTGRSVKLWPY 43 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G---~vdp~~vl~~l~ktgK~a~~~~~ 43 (82)
.+||.++.+|+..++++|+. .+++..|++.|++.|-.+.++..
T Consensus 147 ~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~ 192 (202)
T 2rop_A 147 LEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSE 192 (202)
T ss_dssp SSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSCEEEC--
T ss_pred CCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEcCC
Confidence 47999999999999999974 47889999999999999888754
No 36
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=95.23 E-value=0.058 Score=32.91 Aligned_cols=40 Identities=10% Similarity=0.127 Sum_probs=34.4
Q ss_pred CCCeeEEEEeCCCCeEEEEee---cCHHHHHHHHHHhCCceEE
Q 048554 1 FIEVDNNDIDMAVQKVTLMSW---EDQKKVLKIVKKTGRSVKL 40 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~---vdp~~vl~~l~ktgK~a~~ 40 (82)
.+||.++.+|+..++++|+.. ++...|++.|++.|-.+..
T Consensus 33 ~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~Gy~~~~ 75 (111)
T 2ofg_X 33 LKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLAE 75 (111)
T ss_dssp SSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTTTCCEEC
T ss_pred CCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHcCCeeee
Confidence 379999999999999999753 6789999999999987654
No 37
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=95.19 E-value=0.017 Score=31.60 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=29.3
Q ss_pred CCCeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEcc
Q 048554 1 FIEVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLWP 42 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~ 42 (82)
.+||.++.+|+..++++|.+..+ .+.|++.|-.+.+.|
T Consensus 28 ~~gv~~~~v~~~~~~~~v~~~~~----~~~i~~~Gy~~~~~~ 65 (71)
T 2aj0_A 28 IEGVTEAIVNFGASKITVTGEAS----IQQVEQAGAFEHLKI 65 (71)
T ss_dssp STTEEEEEECCSSEEEEEEESCC----HHHHHHHHTTTTCEE
T ss_pred CCCeEEEEEECCCCEEEEEecCc----HHHHHHhCCCccccc
Confidence 37999999999999999997764 456677786554443
No 38
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=92.42 E-value=0.36 Score=29.50 Aligned_cols=42 Identities=7% Similarity=0.015 Sum_probs=35.5
Q ss_pred CCCeeEEEEeCCCCeEEEEe---ecCHHHHHHHHHHhCCceEEcc
Q 048554 1 FIEVDNNDIDMAVQKVTLMS---WEDQKKVLKIVKKTGRSVKLWP 42 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G---~vdp~~vl~~l~ktgK~a~~~~ 42 (82)
.+||.++.+|+..++++|.. .++++.+.+.|++.|-.+.+..
T Consensus 29 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~ 73 (149)
T 2ew9_A 29 EAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVME 73 (149)
T ss_dssp TSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECS
T ss_pred CCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCceEeec
Confidence 36999999999999999974 3678899999999998877643
No 39
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=86.17 E-value=1.3 Score=27.10 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=31.2
Q ss_pred CCCeeEEEEeCCCCeEEEEe---ecCHHHHHHHHHHhCCce
Q 048554 1 FIEVDNNDIDMAVQKVTLMS---WEDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G---~vdp~~vl~~l~ktgK~a 38 (82)
.+||.++.+++..++++|.- .+++..+.+.+++.|-.+
T Consensus 31 ~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~ 71 (151)
T 1p6t_A 31 MPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV 71 (151)
T ss_dssp SSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred CCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCcc
Confidence 37999999999999999863 367888999998888543
No 40
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=85.08 E-value=1.4 Score=35.19 Aligned_cols=39 Identities=13% Similarity=0.264 Sum_probs=34.7
Q ss_pred CCCeeEEEEeCCCCeEEEE---eecCHHHHHHHHHHhCCceE
Q 048554 1 FIEVDNNDIDMAVQKVTLM---SWEDQKKVLKIVKKTGRSVK 39 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~---G~vdp~~vl~~l~ktgK~a~ 39 (82)
.+||+++++|+..++++|+ +.++++++++.|++.|-.+.
T Consensus 27 ~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~~ 68 (723)
T 3j09_A 27 LEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGVV 68 (723)
T ss_dssp STTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEES
T ss_pred CCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCccc
Confidence 3799999999999999997 34899999999999998764
No 41
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=82.72 E-value=1.9 Score=28.18 Aligned_cols=34 Identities=3% Similarity=0.093 Sum_probs=29.3
Q ss_pred CCCeeEEEEeCCCCeEEEEee---cCHHHHHHHHHHh
Q 048554 1 FIEVDNNDIDMAVQKVTLMSW---EDQKKVLKIVKKT 34 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~G~---vdp~~vl~~l~kt 34 (82)
++||.++.+++..++++|... +++..|.+.|++.
T Consensus 45 ~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 81 (202)
T 2rop_A 45 LLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEAL 81 (202)
T ss_dssp BTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTS
T ss_pred CCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 369999999999999999753 6788899999877
No 42
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=82.55 E-value=0.6 Score=29.73 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=28.3
Q ss_pred CCeeEEEE-----eCCCC--eEEEEee-cCHHHHHHHHHHhCCce
Q 048554 2 IEVDNNDI-----DMAVQ--KVTLMSW-EDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 2 ~GV~~v~v-----D~~~q--kVtV~G~-vdp~~vl~~l~ktgK~a 38 (82)
+||+.|.+ |.+.+ |+||.|. +|.++|.++|++.|-..
T Consensus 32 ~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~GgvI 76 (100)
T 3bpd_A 32 ENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVI 76 (100)
T ss_dssp TTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEE
T ss_pred CCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeE
Confidence 56666654 55443 8888998 99999999999999543
No 43
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=82.32 E-value=0.8 Score=28.98 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=28.0
Q ss_pred CCeeEEEE-----eCCCC--eEEEEee-cCHHHHHHHHHHhCCce
Q 048554 2 IEVDNNDI-----DMAVQ--KVTLMSW-EDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 2 ~GV~~v~v-----D~~~q--kVtV~G~-vdp~~vl~~l~ktgK~a 38 (82)
+||+.|.+ |.+.+ |+|+.|. +|-+.|.+.|++.|-..
T Consensus 32 ~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg~I 76 (97)
T 2raq_A 32 RGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSI 76 (97)
T ss_dssp TTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEE
T ss_pred CCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeE
Confidence 46655543 55544 8888998 99999999999999543
No 44
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=81.48 E-value=0.82 Score=28.89 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=28.2
Q ss_pred CCeeEEEE-----eCCCC--eEEEEee-cCHHHHHHHHHHhCCce
Q 048554 2 IEVDNNDI-----DMAVQ--KVTLMSW-EDQKKVLKIVKKTGRSV 38 (82)
Q Consensus 2 ~GV~~v~v-----D~~~q--kVtV~G~-vdp~~vl~~l~ktgK~a 38 (82)
+||+.|.+ |.+.+ |+|+.|. +|.+.|.++|++.|-..
T Consensus 31 ~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg~I 75 (96)
T 2x3d_A 31 DGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGCAI 75 (96)
T ss_dssp TTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTCEE
T ss_pred CCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeE
Confidence 56666654 55443 8888998 99999999999999543
No 45
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=69.92 E-value=16 Score=22.30 Aligned_cols=41 Identities=12% Similarity=-0.003 Sum_probs=27.0
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEccC
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLWPY 43 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~~ 43 (82)
.||.++++|-++++|++.| .+.+.+-++.+...---+..+.
T Consensus 44 tGv~~IdI~eddG~V~I~g-~~~ea~~~A~~~I~~ie~~~~v 84 (91)
T 2cpq_A 44 PGVTAIELDEDTGTFRIYG-ESADAVKKARGFLEFVEDFIQV 84 (91)
T ss_dssp TTEEEEEEETTTTEEEEEE-SSHHHHHHHHHHHSCCCCCCCC
T ss_pred hCCeEEEEEcCCCEEEEEE-CCHHHHHHHHHHHHhhheEEec
Confidence 3676788886679999998 5777776666554444443333
No 46
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=47.56 E-value=14 Score=23.86 Aligned_cols=32 Identities=6% Similarity=0.129 Sum_probs=27.2
Q ss_pred CCeEEEEeecCHHHHHHHHHHh-CCceEEccCC
Q 048554 13 VQKVTLMSWEDQKKVLKIVKKT-GRSVKLWPYS 44 (82)
Q Consensus 13 ~qkVtV~G~vdp~~vl~~l~kt-gK~a~~~~~p 44 (82)
+.-|.|+|.-|=.-++++||+. |++++++..+
T Consensus 110 d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~ 142 (165)
T 2qip_A 110 DRVILVSGDGDFSLLVERIQQRYNKKVTVYGVP 142 (165)
T ss_dssp SEEEEECCCGGGHHHHHHHHHHHCCEEEEEECG
T ss_pred CEEEEEECChhHHHHHHHHHHHcCcEEEEEeCC
Confidence 3467889999999999999985 9999998754
No 47
>2kgs_A Uncharacterized protein RV0899/MT0922; outer membrane protein A, BON DO cell membrane, membrane, transmembrane, membrane protein; NMR {Mycobacterium tuberculosis} PDB: 2ksm_A
Probab=43.98 E-value=11 Score=23.96 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=21.2
Q ss_pred eEEEEeCCCCeEEEEeecCHHHHHHHHH
Q 048554 5 DNNDIDMAVQKVTLMSWEDQKKVLKIVK 32 (82)
Q Consensus 5 ~~v~vD~~~qkVtV~G~vdp~~vl~~l~ 32 (82)
..+++..+.++||++|.++...-.+.+.
T Consensus 77 ~~i~V~V~~g~VtLsG~v~s~~~r~~a~ 104 (132)
T 2kgs_A 77 PDFGLKVERDTVTLTGTAPSSEHKDAVK 104 (132)
T ss_dssp TTCEEEEEETEEEEECEESSHHHHHHHH
T ss_pred CceEEEEECCEEEEEEEECCHHHHHHHH
Confidence 3567788899999999988775555543
No 48
>3mso_A Steroid delta-isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.57A {Pseudomonas aeruginosa}
Probab=43.87 E-value=19 Score=22.54 Aligned_cols=34 Identities=15% Similarity=0.052 Sum_probs=28.3
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHHHHHH-HhC
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVLKIVK-KTG 35 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~-ktg 35 (82)
.||+-+.+|-+..-+.++..++|.+.+..|. +.|
T Consensus 97 ~Gv~v~~~~~dGkI~~~~~~~~P~~~~~~~~~~~~ 131 (143)
T 3mso_A 97 KGIDMIRFDDDGRIVDFEVMVRPMSGLQALGEEMG 131 (143)
T ss_dssp EEEEEEEECTTSCEEEEEEEEESHHHHHHHHHHHH
T ss_pred EEEEEEEECCCCcEEEEEEEECcHHHHHHHHHHHH
Confidence 4788888887777888999999999999995 555
No 49
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.59 E-value=42 Score=22.47 Aligned_cols=27 Identities=7% Similarity=0.199 Sum_probs=23.3
Q ss_pred EEEeCCCCeEEEEeecCHHHHHHHHHH
Q 048554 7 NDIDMAVQKVTLMSWEDQKKVLKIVKK 33 (82)
Q Consensus 7 v~vD~~~qkVtV~G~vdp~~vl~~l~k 33 (82)
-.+|-++++.+|.|..++.+|-+.|++
T Consensus 72 g~id~~~~rlii~G~~~~~~i~~~L~~ 98 (157)
T 2e9h_A 72 TQFDVKNDRYIVNGSHEANKLQDMLDG 98 (157)
T ss_dssp EEEETTTTEEEEEBCCCHHHHHHHHHH
T ss_pred eeecCCCCEEEEEeeeCHHHHHHHHHH
Confidence 457878999999999999999888864
No 50
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=37.55 E-value=11 Score=23.29 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=11.3
Q ss_pred EEEEeCCCCeEEEEe
Q 048554 6 NNDIDMAVQKVTLMS 20 (82)
Q Consensus 6 ~v~vD~~~qkVtV~G 20 (82)
.|++..+.+.|||+|
T Consensus 22 gV~V~i~~~~VtVKG 36 (100)
T 2cql_A 22 NVDITLKGRTVIVKG 36 (100)
T ss_dssp SCEEEEETTEEEEEE
T ss_pred CCEEEEeCCEEEEEC
Confidence 356666788999987
No 51
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=36.96 E-value=56 Score=20.08 Aligned_cols=28 Identities=7% Similarity=0.170 Sum_probs=22.8
Q ss_pred CCCCeEEEEeec---CHHHHHHHHHHhCCce
Q 048554 11 MAVQKVTLMSWE---DQKKVLKIVKKTGRSV 38 (82)
Q Consensus 11 ~~~qkVtV~G~v---dp~~vl~~l~ktgK~a 38 (82)
+...+|.+||.+ +.+++.+.|+..|-++
T Consensus 33 l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v 63 (109)
T 2k6g_A 33 LEGLIFVITGVLESIERDEAKSLIERYGGKV 63 (109)
T ss_dssp TTTCEEEEESBCSSCCHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEeeeCCCCCHHHHHHHHHHcCCEe
Confidence 567789999997 5789988888888654
No 52
>3gzb_A Putative snoal-like polyketide cyclase; YP_001182657.1, STRU genomics, joint center for structural genomics, JCSG; HET: MSE; 1.44A {Shewanella putrefaciens} PDB: 3lza_A*
Probab=34.88 E-value=51 Score=22.07 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=25.4
Q ss_pred CCCeeEEEEeCCCCeEEEE-eecCHHHHHHHH
Q 048554 1 FIEVDNNDIDMAVQKVTLM-SWEDQKKVLKIV 31 (82)
Q Consensus 1 ~~GV~~v~vD~~~qkVtV~-G~vdp~~vl~~l 31 (82)
.+||..+..|+..++|+=. -.+|-..+...|
T Consensus 120 iPGVTtlklDm~~~Rv~eh~DlmDyqTm~DQl 151 (154)
T 3gzb_A 120 IPAVTSLKLDMLNRRVTEHVDLIDYQTMSDQL 151 (154)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEECHHHHHHHH
T ss_pred cCceEEEeecCCccchhhhHhHHhHHHHHHHh
Confidence 3799999999999999974 458888777665
No 53
>3ge2_A Lipoprotein, putative; beta-barrel, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.20A {Streptococcus pneumoniae}
Probab=34.37 E-value=32 Score=22.58 Aligned_cols=19 Identities=21% Similarity=0.108 Sum_probs=16.4
Q ss_pred eeEEEEeCCCCeEEEEeec
Q 048554 4 VDNNDIDMAVQKVTLMSWE 22 (82)
Q Consensus 4 V~~v~vD~~~qkVtV~G~v 22 (82)
|+.|.||..+|+++|...+
T Consensus 85 ikqV~iD~~NQ~m~IGDDv 103 (130)
T 3ge2_A 85 VKQVTFDSANQRMIIGDDV 103 (130)
T ss_dssp EEEEEEETTTTEEEETTEE
T ss_pred eEEEEEccCcCEEEecCcc
Confidence 8899999999999996544
No 54
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=33.65 E-value=22 Score=21.26 Aligned_cols=22 Identities=5% Similarity=0.148 Sum_probs=17.3
Q ss_pred CCe--eEEEEeCCCCeEEEEeecC
Q 048554 2 IEV--DNNDIDMAVQKVTLMSWED 23 (82)
Q Consensus 2 ~GV--~~v~vD~~~qkVtV~G~vd 23 (82)
+|+ ++++|...++.++|+|.-.
T Consensus 20 PG~~~edI~V~v~~~~L~I~g~~~ 43 (101)
T 2wj5_A 20 KHFSPEEISVKVVGDHVEVHARHE 43 (101)
T ss_dssp TTSCGGGEEEEEETTEEEEEEEEE
T ss_pred CCCcHHHeEEEEECCEEEEEEEEe
Confidence 455 5688888899999999753
No 55
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=32.17 E-value=55 Score=22.18 Aligned_cols=26 Identities=8% Similarity=0.201 Sum_probs=22.3
Q ss_pred EEeCCCCeEEEEeecCHHHHHHHHHH
Q 048554 8 DIDMAVQKVTLMSWEDQKKVLKIVKK 33 (82)
Q Consensus 8 ~vD~~~qkVtV~G~vdp~~vl~~l~k 33 (82)
.+|.++++.+|.|..++..|-..|++
T Consensus 66 ~id~~~~rliinG~~~~~~i~~~L~~ 91 (170)
T 2g2k_A 66 QFDVKNDRYIVNGSHEANKLQDMLDG 91 (170)
T ss_dssp EECTTTCCEEEEBCCCHHHHHHHHHH
T ss_pred eecCCCCEEEEEeeeCHHHHHHHHHH
Confidence 56777899999999999998888864
No 56
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.85 E-value=57 Score=20.30 Aligned_cols=28 Identities=7% Similarity=0.170 Sum_probs=22.7
Q ss_pred CCCCeEEEEeec---CHHHHHHHHHHhCCce
Q 048554 11 MAVQKVTLMSWE---DQKKVLKIVKKTGRSV 38 (82)
Q Consensus 11 ~~~qkVtV~G~v---dp~~vl~~l~ktgK~a 38 (82)
+...+|.+||.+ +.+++.+.|++.|-++
T Consensus 23 l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv 53 (112)
T 2ebu_A 23 LEGLIFVITGVLESIERDEAKSLIERYGGKV 53 (112)
T ss_dssp STTCEEEECSCCSSSCHHHHHHHHHHTTCEE
T ss_pred cCCCEEEEeeeCCCCCHHHHHHHHHHcCCEE
Confidence 567889999987 6788888888888654
No 57
>2ks0_A Uncharacterized protein; YABP family, structural genomi 2, protein structure initiative, northeast structural genom consortium; NMR {Desulfitobacterium hafniense} PDB: 2kyi_A 3ipf_A
Probab=30.12 E-value=22 Score=20.85 Aligned_cols=15 Identities=20% Similarity=0.342 Sum_probs=7.9
Q ss_pred EeCCCCeEEEEeecC
Q 048554 9 IDMAVQKVTLMSWED 23 (82)
Q Consensus 9 vD~~~qkVtV~G~vd 23 (82)
+|++++.|+++|.++
T Consensus 44 L~lE~Gev~IeG~I~ 58 (71)
T 2ks0_A 44 LDLKAGQVEVEGLID 58 (71)
T ss_dssp --CCTTCEEEEEEEE
T ss_pred eecCccEEEEEEEEE
Confidence 455666666666554
No 58
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=29.17 E-value=70 Score=19.88 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=22.5
Q ss_pred CCCCeEEEEeecC--HHHHHHHHHHhCCce
Q 048554 11 MAVQKVTLMSWED--QKKVLKIVKKTGRSV 38 (82)
Q Consensus 11 ~~~qkVtV~G~vd--p~~vl~~l~ktgK~a 38 (82)
+...+|.+||++. .+++.+.|++.|-++
T Consensus 11 l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv 40 (113)
T 2cok_A 11 LSNMKILTLGKLSRNKDEVKAMIEKLGGKL 40 (113)
T ss_dssp SSSCEEEECSCCSSCHHHHHHHHHHTTCEE
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHCCCEE
Confidence 5677899999874 788888888888665
No 59
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=28.82 E-value=54 Score=21.63 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=21.8
Q ss_pred EEEeCCCCeEEEEeecCHHHHHHHHHHh
Q 048554 7 NDIDMAVQKVTLMSWEDQKKVLKIVKKT 34 (82)
Q Consensus 7 v~vD~~~qkVtV~G~vdp~~vl~~l~kt 34 (82)
-.+| +++.+|.|..++.+|-+.|++=
T Consensus 75 g~id--~~rlii~G~~~~~~i~~~L~~y 100 (148)
T 2d74_B 75 GTLE--GRRVVLQGRFTPYLIANKLKKY 100 (148)
T ss_dssp EEEE--TTEEEESSCCCHHHHHHHHHHH
T ss_pred eeec--CCEEEEEeeeCHHHHHHHHHHH
Confidence 3566 8899999999999999988753
No 60
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus}
Probab=28.70 E-value=42 Score=22.96 Aligned_cols=30 Identities=20% Similarity=0.067 Sum_probs=27.3
Q ss_pred EEEeCCCCeEEEEeecCHHHHHHHHHHhCC
Q 048554 7 NDIDMAVQKVTLMSWEDQKKVLKIVKKTGR 36 (82)
Q Consensus 7 v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK 36 (82)
+++|.+.+.|+|.+-+.-.+|.+.+.+.|.
T Consensus 1 l~vd~~~~~v~V~aGv~l~~L~~~l~~~Gl 30 (219)
T 2yvs_A 1 MEVHAADQYLVAPGEADLLEVHARLAGTGL 30 (219)
T ss_dssp CEEETTTTEEEEETTCCHHHHHHHHTTTTE
T ss_pred CeEcCCCCEEEEcCCCcHHHHHHHHHHcCC
Confidence 478999999999999999999999988885
No 61
>3pro_C Alpha-lytic protease; Pro region, foldase, protein folding, serine protease, hydro hydrolase inhibitor complex; HET: AES; 1.80A {Lysobacter enzymogenes} SCOP: d.52.1.1 d.52.1.1 PDB: 2pro_A* 4pro_C
Probab=28.65 E-value=1.1e+02 Score=20.37 Aligned_cols=35 Identities=14% Similarity=0.034 Sum_probs=23.9
Q ss_pred CCeeEEEEeCCCCeEEEEee-cCHHHHHHHHHHhCC
Q 048554 2 IEVDNNDIDMAVQKVTLMSW-EDQKKVLKIVKKTGR 36 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~-vdp~~vl~~l~ktgK 36 (82)
.||.+--||...|+|+|+-. =.+...-+.+++.|-
T Consensus 114 ~~v~~W~VD~~tN~VVV~a~~~~~~aa~~f~~~AG~ 149 (166)
T 3pro_C 114 DGVQSWYVDPRSNAVVVKVDDGATDAGVDFVALSGA 149 (166)
T ss_dssp TTEEEEEEEGGGTEEEEEEETTCHHHHHHHHHHHTC
T ss_pred CCCceEEEeCCCCeEEEEeCCCChHHHHHHHHHhCC
Confidence 47889999999999999864 123333333356664
No 62
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=28.21 E-value=38 Score=19.52 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=16.4
Q ss_pred eEEEEeCCCCeEEEEeecCH
Q 048554 5 DNNDIDMAVQKVTLMSWEDQ 24 (82)
Q Consensus 5 ~~v~vD~~~qkVtV~G~vdp 24 (82)
++++|...++.++|.|.-..
T Consensus 21 edi~V~v~~~~L~I~g~~~~ 40 (85)
T 3q9p_A 21 DELTVKTKDGVVEITGKHAA 40 (85)
T ss_dssp SEEEEEEETTEEEEEEEEC-
T ss_pred HHEEEEEECCEEEEEEEEcc
Confidence 67888899999999998553
No 63
>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine biosynthesis; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.168.1.1
Probab=27.56 E-value=1.3e+02 Score=19.72 Aligned_cols=38 Identities=13% Similarity=0.362 Sum_probs=30.6
Q ss_pred eeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceEEccC
Q 048554 4 VDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVKLWPY 43 (82)
Q Consensus 4 V~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~~~ 43 (82)
|-.|.-|...++|---|+++.+.|-+.|+ || .+.+|+-
T Consensus 24 ipaIvQd~~tg~VLMlayMN~EAl~~Tl~-tg-~~~y~SR 61 (138)
T 1zps_A 24 IIAVAQDHETGEVLMVAYMNREALRRTLE-TG-TAHYWST 61 (138)
T ss_dssp EEEEEEETTTCCEEEEEEECHHHHHHHHH-HS-BCEEEET
T ss_pred EEEEEEECCCCCEEEEEecCHHHHHHHHh-cC-cEEEEcC
Confidence 55677799999999999999999999986 66 5555543
No 64
>3mgj_A Uncharacterized protein MJ1480; saccharop_DH_N domain, NESG, structural genomics, PSI-2, protein structure initiative; 2.70A {Methanocaldococcus jannaschii}
Probab=26.99 E-value=89 Score=20.02 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=27.9
Q ss_pred eEEEEee--cCHHHHHHHHHHhCC------ceEEccCCCCCCCCCCCccCCCC
Q 048554 15 KVTLMSW--EDQKKVLKIVKKTGR------SVKLWPYSYNPNGDFGYYPQSPY 59 (82)
Q Consensus 15 kVtV~G~--vdp~~vl~~l~ktgK------~a~~~~~p~~~~~~~g~~~~~~~ 59 (82)
++.|.|. -.-+.||..|++.|- .|.+.|.|.+.-.|.|||-..-+
T Consensus 50 ~l~V~a~d~e~L~~Il~~L~~lGA~~~~~~da~l~~a~~dgV~P~~FysTTn~ 102 (118)
T 3mgj_A 50 KILVIGRDERHVDEILNELRDLGAEIPEIEEVELQPAEKDMVLPEGFYSTTNH 102 (118)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHCTTEEEEEECCSSSCCBCCSCCC-----
T ss_pred EEEEecCCHHHHHHHHHHHHHcCCcCCCCCCceEEEccccCcCCCCeeecCCC
Confidence 4788775 333567777776663 45566778888889999876543
No 65
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=26.89 E-value=77 Score=21.63 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=16.2
Q ss_pred CCCCeEEEEeecCHHHHHHHHH
Q 048554 11 MAVQKVTLMSWEDQKKVLKIVK 32 (82)
Q Consensus 11 ~~~qkVtV~G~vdp~~vl~~l~ 32 (82)
...+||++||.=..+.+-++++
T Consensus 155 F~SGKiviTGaks~~~~~~A~~ 176 (198)
T 1mp9_A 155 FSSGKMVITGAKREDEVHKAVK 176 (198)
T ss_dssp CTTSEEEEEEESSHHHHHHHHH
T ss_pred eCCCEEEEEecCCHHHHHHHHH
Confidence 3579999999977666655554
No 66
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=26.02 E-value=92 Score=23.37 Aligned_cols=36 Identities=8% Similarity=-0.013 Sum_probs=30.9
Q ss_pred eeEEEEeCCCCeEEEEeecCHHHHHHHHHHhCCceE
Q 048554 4 VDNNDIDMAVQKVTLMSWEDQKKVLKIVKKTGRSVK 39 (82)
Q Consensus 4 V~~v~vD~~~qkVtV~G~vdp~~vl~~l~ktgK~a~ 39 (82)
...|++|.+.+.++|.+-+--.+|.++|.+.|+...
T Consensus 109 ~~~v~~d~~~~~~~v~~G~~~~~~~~~l~~~g~~~~ 144 (500)
T 3tsh_A 109 MRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLA 144 (500)
T ss_dssp CCCEEEETTTTEEEEETTSBHHHHHHHHHHHCTTEE
T ss_pred CCCEEECCCCCEEEEccCcCHHHHHHHHHHhCCCcc
Confidence 456789999999999999999999999998887543
No 67
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=25.82 E-value=38 Score=23.28 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=27.1
Q ss_pred CeeEEEEeCCCCeEEEEe-ecCHHHHHHHHHHh-CCce
Q 048554 3 EVDNNDIDMAVQKVTLMS-WEDQKKVLKIVKKT-GRSV 38 (82)
Q Consensus 3 GV~~v~vD~~~qkVtV~G-~vdp~~vl~~l~kt-gK~a 38 (82)
||.+.+|....=||++-| +++++.+...|.|. ||.+
T Consensus 28 GvR~~~I~~~~iKvYa~GlYl~~~~~~~~l~kwk~~~~ 65 (208)
T 4dok_A 28 GITDIEIHFLQVKFTAIGVYLDPSDVKTHLDNWKGKTG 65 (208)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHCGGGTTCCH
T ss_pred eeeeEeeeeeEEEEEEEEEEecHHHHHHHHhhhcCCCH
Confidence 677888866666888899 59999999988663 4443
No 68
>2zkr_l 60S ribosomal protein L27A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.74 E-value=44 Score=21.69 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=23.8
Q ss_pred CCCCeEEEEeecCHHHHHHHHHHhCCceEEc
Q 048554 11 MAVQKVTLMSWEDQKKVLKIVKKTGRSVKLW 41 (82)
Q Consensus 11 ~~~qkVtV~G~vdp~~vl~~l~ktgK~a~~~ 41 (82)
+..|+|+|+...=...-.++|++.|-.+++.
T Consensus 117 l~k~~l~Vka~~fSk~A~ekIeaAGG~v~~~ 147 (148)
T 2zkr_l 117 LPKQPVIVKAKFFSRRAEEKIKSVGGACVLV 147 (148)
T ss_dssp CCSSCCEEEESEECHHHHHHHHHTTCEEEEC
T ss_pred cccCCEEEEEEecCHHHHHHHHHcCCEEEec
Confidence 3446888888766677788899999888764
No 69
>3flj_A Uncharacterized protein conserved in bacteria WIT cystatin-like fold; YP_168589.1; HET: MSE; 2.00A {Silicibacter pomeroyi dss-3}
Probab=25.52 E-value=52 Score=21.47 Aligned_cols=34 Identities=9% Similarity=-0.013 Sum_probs=28.1
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHHHHHH-HhC
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVLKIVK-KTG 35 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~-ktg 35 (82)
.||+-+.+|-+..-+.++..++|.+.+.+|. +.|
T Consensus 104 ~gvd~~~fdedGkI~e~~vm~rP~k~l~al~~~m~ 138 (155)
T 3flj_A 104 VGVDLITLNEGGLIQDFEVVMRPYKTVGALRDAMN 138 (155)
T ss_dssp EEEEEEEECTTSSEEEEEEEEECHHHHHHHHHHHH
T ss_pred EEEEEEEEcCCCCEEEEEEEEChHHHHHHHHHHHH
Confidence 4677888888888888899999999999995 544
No 70
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}
Probab=24.84 E-value=66 Score=18.97 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=19.5
Q ss_pred EEEEeCCCCeEEEEeecCHHHH
Q 048554 6 NNDIDMAVQKVTLMSWEDQKKV 27 (82)
Q Consensus 6 ~v~vD~~~qkVtV~G~vdp~~v 27 (82)
-+.||...+.+++...+|.+++
T Consensus 48 ~F~Id~~tG~i~~~~~LDRE~~ 69 (103)
T 1wuz_A 48 LLEVNLQNGILFVNSRIDREEL 69 (103)
T ss_dssp SEEEETTTTEEEECSCCSHHHH
T ss_pred EEEEECCeEEEEECCcCccccc
Confidence 3789999999999999998875
No 71
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=23.82 E-value=97 Score=20.77 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=19.2
Q ss_pred CCCCeEEEEeecCHHHHHHHHHH
Q 048554 11 MAVQKVTLMSWEDQKKVLKIVKK 33 (82)
Q Consensus 11 ~~~qkVtV~G~vdp~~vl~~l~k 33 (82)
...+||++||.=..+++-+++++
T Consensus 151 F~SGKiviTGaks~~~~~~a~~~ 173 (182)
T 1ais_A 151 FSSGKIVCSGAKSEADAWEAVRK 173 (182)
T ss_dssp CTTSEEEEEEESSHHHHHHHHHH
T ss_pred ecCCEEEEEecCCHHHHHHHHHH
Confidence 35799999999888888888765
No 72
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=23.77 E-value=97 Score=20.79 Aligned_cols=23 Identities=9% Similarity=0.247 Sum_probs=18.7
Q ss_pred CCCCeEEEEeecCHHHHHHHHHH
Q 048554 11 MAVQKVTLMSWEDQKKVLKIVKK 33 (82)
Q Consensus 11 ~~~qkVtV~G~vdp~~vl~~l~k 33 (82)
...+||+|||.=.++++-+++++
T Consensus 147 F~SGkivitGak~~~~~~~a~~~ 169 (180)
T 1ytb_A 147 FVSGKIVLTGAKQREEIYQAFEA 169 (180)
T ss_dssp CTTSEEEEEEESSHHHHHHHHHH
T ss_pred ecCCeEEEEecCCHHHHHHHHHH
Confidence 35789999999888888777754
No 73
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=23.57 E-value=80 Score=21.37 Aligned_cols=23 Identities=17% Similarity=0.318 Sum_probs=18.1
Q ss_pred CCCCeEEEEeecCHHHHHHHHHH
Q 048554 11 MAVQKVTLMSWEDQKKVLKIVKK 33 (82)
Q Consensus 11 ~~~qkVtV~G~vdp~~vl~~l~k 33 (82)
...+||++||.=..+++-+++++
T Consensus 155 F~SGKiviTGaks~~~~~~A~~~ 177 (188)
T 2z8u_A 155 FGSGKVVITGLKSEEDAKRALKK 177 (188)
T ss_dssp CTTSEEEEESCSCHHHHHHHHHH
T ss_pred eCCCEEEEEecCCHHHHHHHHHH
Confidence 36799999999887777776654
No 74
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=23.32 E-value=69 Score=22.69 Aligned_cols=20 Identities=10% Similarity=0.308 Sum_probs=17.3
Q ss_pred CeEEEEeecCHHHHHHHHHH
Q 048554 14 QKVTLMSWEDQKKVLKIVKK 33 (82)
Q Consensus 14 qkVtV~G~vdp~~vl~~l~k 33 (82)
-.+.|.|.+|++++++.+++
T Consensus 190 ~~l~vvGd~d~~~~~~~v~~ 209 (445)
T 3ami_A 190 ATVVVVGDVEHEAVFRLAEQ 209 (445)
T ss_dssp EEEEEEESCCHHHHHHHHHH
T ss_pred eEEEEEcCCCHHHHHHHHHH
Confidence 36788999999999999975
No 75
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=22.61 E-value=35 Score=20.89 Aligned_cols=23 Identities=0% Similarity=0.001 Sum_probs=17.5
Q ss_pred CCe--eEEEEeCCC-CeEEEEeecCH
Q 048554 2 IEV--DNNDIDMAV-QKVTLMSWEDQ 24 (82)
Q Consensus 2 ~GV--~~v~vD~~~-qkVtV~G~vdp 24 (82)
+|| ++++|.... +.++|+|.-..
T Consensus 43 PG~~~edi~V~v~~~~~L~I~g~~~~ 68 (123)
T 3aab_A 43 AGFNKEKIKARVSGQNELIIEAEREI 68 (123)
T ss_dssp CSCCGGGCEEEEETTTEEEEEEECCC
T ss_pred CCCCHHHEEEEEeCCCEEEEEEEEec
Confidence 565 557788888 99999998554
No 76
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=22.35 E-value=74 Score=22.23 Aligned_cols=20 Identities=10% Similarity=0.116 Sum_probs=17.2
Q ss_pred CeEEEEeecCHHHHHHHHHH
Q 048554 14 QKVTLMSWEDQKKVLKIVKK 33 (82)
Q Consensus 14 qkVtV~G~vdp~~vl~~l~k 33 (82)
-.+.|.|.+|++++++.+++
T Consensus 183 ~~l~v~Gd~~~~~~~~~i~~ 202 (406)
T 3eoq_A 183 MVLAATGRVDFDRLLAEAER 202 (406)
T ss_dssp EEEEEEESCCHHHHHHHHHH
T ss_pred EEEEEEcCCCHHHHHHHHHH
Confidence 36788999999999999975
No 77
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=22.30 E-value=1.4e+02 Score=20.51 Aligned_cols=27 Identities=26% Similarity=0.164 Sum_probs=20.1
Q ss_pred EEEEeCCCCeEEEEeec---CHHHHHHHHH
Q 048554 6 NNDIDMAVQKVTLMSWE---DQKKVLKIVK 32 (82)
Q Consensus 6 ~v~vD~~~qkVtV~G~v---dp~~vl~~l~ 32 (82)
++++|.+.+.|+|.|.- |++.+.++..
T Consensus 66 kI~I~~~~g~V~I~~~~~t~d~~~i~kA~~ 95 (219)
T 2e3u_A 66 KITIDSETGEVWITSTKETEDPLAVWKARD 95 (219)
T ss_dssp EEEECTTTCEEEEEECTTCCSHHHHHHHHH
T ss_pred EEEEEcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 47788788999999853 6777766653
No 78
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=22.18 E-value=1.2e+02 Score=17.14 Aligned_cols=28 Identities=7% Similarity=-0.194 Sum_probs=20.5
Q ss_pred EEEeCCCCeEEEE---eecCHHHHHHHHHHh
Q 048554 7 NDIDMAVQKVTLM---SWEDQKKVLKIVKKT 34 (82)
Q Consensus 7 v~vD~~~qkVtV~---G~vdp~~vl~~l~kt 34 (82)
+-+|...+.+... |..++++|.+.|++.
T Consensus 104 ~lid~~G~i~~~~~~~g~~~~~~l~~~l~~l 134 (136)
T 1lu4_A 104 VFYRADGTSTFVNNPTAAMSQDELSGRVAAL 134 (136)
T ss_dssp EEECTTSCEEEECCSSSCCCHHHHHHHHHHC
T ss_pred EEECCCCcEEEEEcCCCccCHHHHHHHHHHH
Confidence 4456655555567 889999999999753
No 79
>2qsr_A Transcription-repair coupling factor; structural genomics, PSI-2, protein ST initiative; 3.10A {Streptococcus pneumoniae}
Probab=21.76 E-value=74 Score=21.00 Aligned_cols=37 Identities=14% Similarity=0.023 Sum_probs=27.3
Q ss_pred CeeEEEEeCCCCeEEEE------eecCHHHHHHHHHHhCCceEEc
Q 048554 3 EVDNNDIDMAVQKVTLM------SWEDQKKVLKIVKKTGRSVKLW 41 (82)
Q Consensus 3 GV~~v~vD~~~qkVtV~------G~vdp~~vl~~l~ktgK~a~~~ 41 (82)
||++|+. ..+.++++ ..+++..+++.+++.++++.+.
T Consensus 81 gI~~I~~--~~~~i~i~f~~~~~~~~~~~~l~~~i~~~~~~~~l~ 123 (173)
T 2qsr_A 81 FVQRVER--KDNKITIQFEKVTQRLFLAQDYFKALSVTNLKAGIA 123 (173)
T ss_dssp TEEEEEE--CSSEEEEEECTTHHHHCCHHHHHHHHTTSSSEEEEE
T ss_pred CCcEEEe--cCCEEEEEEccCcccccCHHHHHHHHHhcCccEEec
Confidence 7888774 55666665 2388999999998887777765
No 80
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=21.26 E-value=42 Score=19.40 Aligned_cols=22 Identities=0% Similarity=0.046 Sum_probs=16.9
Q ss_pred CCe--eEEEEeCCCCeEEEEeecC
Q 048554 2 IEV--DNNDIDMAVQKVTLMSWED 23 (82)
Q Consensus 2 ~GV--~~v~vD~~~qkVtV~G~vd 23 (82)
+|+ ++++|....+.++|+|.-.
T Consensus 15 PG~~~edi~V~v~~~~L~I~g~~~ 38 (90)
T 2y1y_A 15 KHFSPEELKVKVLGDVIEVHGKHE 38 (90)
T ss_dssp TTSCGGGEEEEEETTEEEEEEEEE
T ss_pred CCCcHHHeEEEEECCEEEEEEEEe
Confidence 454 4688888899999999743
No 81
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=21.18 E-value=80 Score=22.16 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=16.6
Q ss_pred eEEEEeecCHHHHHHHHHH
Q 048554 15 KVTLMSWEDQKKVLKIVKK 33 (82)
Q Consensus 15 kVtV~G~vdp~~vl~~l~k 33 (82)
.+.|.|.+|++++++.+++
T Consensus 190 ~l~v~Gd~~~~~~~~~i~~ 208 (443)
T 1hr6_B 190 VLAGAGAVDHEKLVQYAQK 208 (443)
T ss_dssp EEEEEESCCHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHH
Confidence 6788999999999999864
No 82
>3f8x_A Putative delta-5-3-ketosteroid isomerase; structural genomics, joint center for structural genomics; HET: MSE; 1.55A {Pectobacterium atrosepticum SCRI1043}
Probab=21.01 E-value=1e+02 Score=19.49 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=27.9
Q ss_pred CCeeEEEEeCCCCeEEEEeecCHHHHHHHHH-HhC
Q 048554 2 IEVDNNDIDMAVQKVTLMSWEDQKKVLKIVK-KTG 35 (82)
Q Consensus 2 ~GV~~v~vD~~~qkVtV~G~vdp~~vl~~l~-ktg 35 (82)
.||.-+.+|-+..-+.++..++|.+.+..|. +.|
T Consensus 106 ~Gvdvl~~d~dGkI~~~~~~~~P~~~~~~l~~~m~ 140 (148)
T 3f8x_A 106 TGVDLIEFNDAGKITDLVVMMRPASVVIDLSVEVG 140 (148)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECHHHHHHHHHHHH
T ss_pred EEEEEEEECCCCcEEEEEEEEchHHHHHHHHHHHH
Confidence 4778888887777788899999999999995 554
No 83
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=20.07 E-value=88 Score=21.73 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=18.0
Q ss_pred CCeEEEEeecCHHHHHHHHHH
Q 048554 13 VQKVTLMSWEDQKKVLKIVKK 33 (82)
Q Consensus 13 ~qkVtV~G~vdp~~vl~~l~k 33 (82)
.-.+.|.|.+|++++++.+++
T Consensus 189 ~~~l~v~Gd~~~~~~~~~~~~ 209 (424)
T 3amj_B 189 TAVVTLVGDITRAEAETIAQQ 209 (424)
T ss_dssp SCEEEEEESCCHHHHHHHHHH
T ss_pred ceEEEEEeCCCHHHHHHHHHH
Confidence 447889999999999999975
No 84
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=20.06 E-value=89 Score=19.86 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=25.9
Q ss_pred CCCeEEEEee--cCHHHHHHHHHHhCCceEEcc
Q 048554 12 AVQKVTLMSW--EDQKKVLKIVKKTGRSVKLWP 42 (82)
Q Consensus 12 ~~qkVtV~G~--vdp~~vl~~l~ktgK~a~~~~ 42 (82)
...-|||-|. -+...||+.+++.|...+...
T Consensus 23 ~~~wVtVFGFp~~~~~~VL~~F~~~G~Iv~~~~ 55 (119)
T 1wwh_A 23 DDTWVTVFGFPQASASYILLQFAQYGNILKHVM 55 (119)
T ss_dssp GGGEEEEECCCGGGHHHHHHHHHTTSCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhCcEEEecc
Confidence 3568999997 788999999999998877664
Done!