BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048556
(478 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/479 (45%), Positives = 314/479 (65%), Gaps = 3/479 (0%)
Query: 1 VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHS-GEIIERMSGDTVLIQDSIGEKV 59
V+ W + RQ +IR + ++ Q+IG+FD H GE+ R++ D I + IG+K+
Sbjct: 129 VSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFD--VHDVGELNTRLTDDVSKINEGIGDKI 186
Query: 60 GKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIA 119
G F Q +ATF GGF+I ++GW LTLV+L+ P + L+AG+ + +++ + AY+ A
Sbjct: 187 GMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKA 246
Query: 120 AAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSY 179
AVAE+ + +IRTV +F G+K+ + +YN +L +A + G+ + +SY
Sbjct: 247 GAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASY 306
Query: 180 SLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIE 239
+LA W+G +++ K Y G V+ V F V+IG+ S+GQASP I AFA + AAY++F+ I+
Sbjct: 307 ALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIID 366
Query: 240 RKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSG 299
KP ID++ +G K D+I+G++E K+I+FSYPSR QI G +L + SG T ALVG SG
Sbjct: 367 NKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSG 426
Query: 300 SGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINY 359
GKST + L++R YDP G V IDG +++ ++++R IG+VSQEPVLF ++I +NI Y
Sbjct: 427 CGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRY 486
Query: 360 GKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419
G++ FI LP DT+VGE G QLSGGQKQRIAIARA++++P+
Sbjct: 487 GREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546
Query: 420 ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
ILLLDEATSALD ESE VVQ ALDK RTT+++AHRLSTVRNAD+IA G +VE+
Sbjct: 547 ILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQ 605
Score = 351 bits (901), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 183/473 (38%), Positives = 279/473 (58%), Gaps = 3/473 (0%)
Query: 8 GERQAARIRGLYLKTLLRQDIGFFDKETHS-GEIIERMSGDTVLIQDSIGEKVGKFIQLL 66
GE R+R + K++LRQD+ +FD ++ G + R++ D ++ + G ++ Q +
Sbjct: 777 GEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNI 836
Query: 67 ATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQT 126
A G +I+L GW LTL++L+ +P I + V +++ A + + + +A +
Sbjct: 837 ANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEA 896
Query: 127 IGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFG 186
I + RTV S T E++ Y +SL Y++ + + SY+ A FG
Sbjct: 897 IENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFG 956
Query: 187 GKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDA 246
++ ++ +V+ V ++ G+M++GQ S +A +A + IE+ P ID+
Sbjct: 957 AYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDS 1016
Query: 247 YDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVI 306
Y + G+K + + G+++ + F+YP+RP + G SL + G T ALVG SG GKSTV+
Sbjct: 1017 YSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVV 1076
Query: 307 SLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXX 366
L+ERFYDP AG V +DG +K+ ++W+R ++G+VSQEP+LF SI +NI YG +
Sbjct: 1077 QLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVV 1136
Query: 367 XXX--XXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 424
+FIDSLP +T VG+ GTQLSGGQKQRIAIARA+++ P ILLLD
Sbjct: 1137 SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLD 1196
Query: 425 EATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
EATSALD ESE+VVQEALDK RT +++AHRLST++NADLI VI GK+ E
Sbjct: 1197 EATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 439 bits (1128), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/479 (45%), Positives = 314/479 (65%), Gaps = 3/479 (0%)
Query: 1 VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHS-GEIIERMSGDTVLIQDSIGEKV 59
V+ W + RQ +IR + ++ Q+IG+FD H GE+ R++ D I + IG+K+
Sbjct: 129 VSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFD--VHDVGELNTRLTDDVSKINEGIGDKI 186
Query: 60 GKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIA 119
G F Q +ATF GGF+I ++GW LTLV+L+ P + L+AG+ + +++ + AY+ A
Sbjct: 187 GMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKA 246
Query: 120 AAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSY 179
AVAE+ + +IRTV +F G+K+ + +YN +L +A + G+ + +SY
Sbjct: 247 GAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASY 306
Query: 180 SLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIE 239
+LA W+G +++ K Y G V+ V F V+IG+ S+GQASP I AFA + AAY++F+ I+
Sbjct: 307 ALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIID 366
Query: 240 RKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSG 299
KP ID++ +G K D+I+G++E K+I+FSYPSR QI G +L + SG T ALVG SG
Sbjct: 367 NKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSG 426
Query: 300 SGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINY 359
GKST + L++R YDP G V IDG +++ ++++R IG+VSQEPVLF ++I +NI Y
Sbjct: 427 CGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRY 486
Query: 360 GKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419
G++ FI LP DT+VGE G QLSGGQKQRIAIARA++++P+
Sbjct: 487 GREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK 546
Query: 420 ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
ILLLDEATSALD ESE VVQ ALDK RTT+++AHRLSTVRNAD+IA G +VE+
Sbjct: 547 ILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQ 605
Score = 350 bits (897), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 182/473 (38%), Positives = 278/473 (58%), Gaps = 3/473 (0%)
Query: 8 GERQAARIRGLYLKTLLRQDIGFFDKETHS-GEIIERMSGDTVLIQDSIGEKVGKFIQLL 66
GE R+R + K++LRQD+ +FD ++ G + R++ D ++ + G ++ Q +
Sbjct: 777 GEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNI 836
Query: 67 ATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQT 126
A G +I+L GW LTL++L+ +P I + V +++ A + + + +A +
Sbjct: 837 ANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEA 896
Query: 127 IGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFG 186
I + RTV S T E++ Y +SL Y++ + + SY+ FG
Sbjct: 897 IENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFG 956
Query: 187 GKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDA 246
++ ++ +V+ V ++ G+M++GQ S +A +A + IE+ P ID+
Sbjct: 957 AYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDS 1016
Query: 247 YDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVI 306
Y + G+K + + G+++ + F+YP+RP + G SL + G T ALVG SG GKSTV+
Sbjct: 1017 YSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVV 1076
Query: 307 SLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXX 366
L+ERFYDP AG V +DG +K+ ++W+R ++G+VSQEP+LF SI +NI YG +
Sbjct: 1077 QLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVV 1136
Query: 367 XXX--XXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 424
+FIDSLP +T VG+ GTQLSGGQKQRIAIARA+++ P ILLLD
Sbjct: 1137 SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLD 1196
Query: 425 EATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
EATSALD ESE+VVQEALDK RT +++AHRLST++NADLI VI GK+ E
Sbjct: 1197 EATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 391 bits (1005), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/477 (41%), Positives = 300/477 (62%), Gaps = 1/477 (0%)
Query: 1 VACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVG 60
V C++ E+ R+R ++K++LRQ+I +FD HSG + ++ + +++ G+K+G
Sbjct: 157 VTCYLYVAEQMNNRLRREFVKSILRQEISWFDT-NHSGTLATKLFDNLERVKEGTGDKIG 215
Query: 61 KFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120
Q L+ FI GF++A + W LTLVML+ P L ++ ++ A R Y+ A
Sbjct: 216 MAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAG 275
Query: 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYS 180
V E+TI SIRTV S G + + +Y+ ++ +A K+GV + S++
Sbjct: 276 KVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFA 335
Query: 181 LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240
LA + G + + GD++ VM+GSM+LG A P ++ Q AA ++E ++R
Sbjct: 336 LAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDR 395
Query: 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGS 300
KP+ID+ G K I+GDI +++++F+YPSRP I G +L + +G T ALVG SG
Sbjct: 396 KPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGC 455
Query: 301 GKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360
GKST+ISL+ R+YD G++ IDGV++++ L+++R + +VSQEP LF +I++NI+ G
Sbjct: 456 GKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLG 515
Query: 361 KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420
K+G KFI +LP G +T+VG+ GTQLSGGQKQRIAIARA++++P+I
Sbjct: 516 KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKI 575
Query: 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
LLLDEATSALDAESE +VQ+ALDK RTT+I+AHRLST+RNADLI G++VE
Sbjct: 576 LLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVE 632
Score = 281 bits (720), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 166/469 (35%), Positives = 250/469 (53%), Gaps = 6/469 (1%)
Query: 15 IRGLYLKTLLRQDIGFFDK-ETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGF 73
+R + +L Q IGFFD + SG+I R++ D ++ +I + I L + + G
Sbjct: 829 LRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGI 888
Query: 74 VIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTV 133
+A GW + L++++ +P + + T + + ++ + +A + I ++RTV
Sbjct: 889 GLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTV 948
Query: 134 ASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFGGKMIL-- 191
+ E + E L +K + E + A G +I+
Sbjct: 949 QALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITD 1008
Query: 192 EKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNG 251
+ V+ V++ + I + +LG A+ +A A +F + + ID+ G
Sbjct: 1009 PPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAG 1068
Query: 252 VKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER 311
K + G + K++ F+YP RP +I G S S+ G T ALVG SG GKSTV++L+ER
Sbjct: 1069 EK-KKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLER 1127
Query: 312 FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GXXXXXX 369
FYD GE+ IDG +K + R +I +VSQEP LF SI +NI YG D
Sbjct: 1128 FYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQV 1187
Query: 370 XXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429
FI LP+G +T VG+ GTQLSGGQKQRIAIARA++++P+ILLLDEATSA
Sbjct: 1188 EEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSA 1247
Query: 430 LDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
LD ESE+VVQEALD+ RT +++AHRL+TV NAD IAV+ G ++EK
Sbjct: 1248 LDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEK 1296
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 325 bits (833), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 191/494 (38%), Positives = 286/494 (57%), Gaps = 44/494 (8%)
Query: 7 TGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLL 66
+G+R R+R ++LRQ++ FFDK T +GE+I R+S DT L+ S+ E + ++
Sbjct: 89 SGQRIVNRLRTSLFSSILRQEVAFFDK-TRTGELINRLSSDTALLGRSVTENLSDGLRAG 147
Query: 67 ATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQT 126
A G + L +LS +P + + A + + KL Q + + A +AE+
Sbjct: 148 AQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEER 207
Query: 127 IGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFG 186
IG++RTV +F E + KY + + E +++ A +FG
Sbjct: 208 IGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKE-----------------AFARAGFFG 250
Query: 187 GK------MILEKGYKGGDVIN------------VIFCVMIGSMSLGQASPCISAFAAGQ 228
++L YKGG ++ +++ +G +S+G S S G
Sbjct: 251 ATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVG-ISIGGLSSFYSELMKGL 309
Query: 229 AAAYKLFEAIERKPLIDAYDSNGVKLDD--IRGDIELKDIYFSYPSRPGEQIFNGFSLSI 286
A +L+E +ER+P + + GV L++ +G +E K+++F+YP+RP IF FSLSI
Sbjct: 310 GAGGRLWELLEREPKLPF--NEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSI 367
Query: 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEP 346
PSG+ ALVG SGSGKSTV+SL+ R YDP +G + +DG ++++ W+R KIG VSQEP
Sbjct: 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 347 VLFTSSIKDNINYGKDGXXXXXX---XXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGG 403
+LF+ SI +NI YG D FI + PQG +T+VGE G LSGG
Sbjct: 428 ILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGG 487
Query: 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN 463
QKQRIAIARA+LK+P+ILLLDEATSALDAE+E +VQEALD++M RT +++AHRLST++N
Sbjct: 488 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN 547
Query: 464 ADLIAVIHQGKLVE 477
A+++AV+ QGK+ E
Sbjct: 548 ANMVAVLDQGKITE 561
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 322 bits (825), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 190/494 (38%), Positives = 285/494 (57%), Gaps = 44/494 (8%)
Query: 7 TGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLL 66
+G+R R+R ++LRQ++ FFDK T +GE+I R+S DT L+ S+ E + ++
Sbjct: 120 SGQRIVNRLRTSLFSSILRQEVAFFDK-TRTGELINRLSSDTALLGRSVTENLSDGLRAG 178
Query: 67 ATFIGGFVIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQT 126
A G + L +LS +P + + A + + KL Q + + A +AE+
Sbjct: 179 AQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEER 238
Query: 127 IGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFG 186
IG++RTV +F E + KY + + E +++ A +FG
Sbjct: 239 IGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKE-----------------AFARAGFFG 281
Query: 187 GK------MILEKGYKGGDVIN------------VIFCVMIGSMSLGQASPCISAFAAGQ 228
++L YKGG ++ +++ +G +S+G S S G
Sbjct: 282 ATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVG-ISIGGLSSFYSELMKGL 340
Query: 229 AAAYKLFEAIERKPLIDAYDSNGVKLDD--IRGDIELKDIYFSYPSRPGEQIFNGFSLSI 286
A +L+E +ER+P + + GV L++ +G +E K+++F+YP+RP IF FSLSI
Sbjct: 341 GAGGRLWELLEREPKLPF--NEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSI 398
Query: 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEP 346
PSG+ ALVG SGSGKSTV+SL+ R YDP +G + +DG ++++ W+R KIG VSQEP
Sbjct: 399 PSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 347 VLFTSSIKDNINYGKDGXXXXXX---XXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGG 403
+LF+ SI +NI YG D FI + PQG +T+VGE G LSGG
Sbjct: 459 ILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGG 518
Query: 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN 463
QKQRIAIARA+LK+P+ILLLDEATSALDAE+E +VQEALD++M RT +++AH LST++N
Sbjct: 519 QKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKN 578
Query: 464 ADLIAVIHQGKLVE 477
A+++AV+ QGK+ E
Sbjct: 579 ANMVAVLDQGKITE 592
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 252 bits (643), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 147/467 (31%), Positives = 253/467 (54%), Gaps = 11/467 (2%)
Query: 14 RIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGF 73
R+R + L R +GFFD+ H G+II R+ D I + +G + +F + T G
Sbjct: 111 RLRKELFEKLQRVPVGFFDRTPH-GDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAV 169
Query: 74 VIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTV 133
++ +L+LV LS +P VL ++S+ K Q + E+ I + +
Sbjct: 170 IMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVI 229
Query: 134 ASFTGEKQAVAKY---NESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFGGKMI 190
FT E++ + K+ NESL K G ++L FGG +
Sbjct: 230 KLFTREEKEMEKFDRVNESLRKV---GTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLA 286
Query: 191 LEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSN 250
L+ G + I + L + S + A+A ++FE ++ + D D +
Sbjct: 287 LKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD--DPD 344
Query: 251 GVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE 310
V+L ++RG+IE K+++FSY + + + + I G ALVG +GSGK+T+++L+
Sbjct: 345 AVELREVRGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402
Query: 311 RFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXX 370
RFYD G++L+DG+++++ + +R IG+V Q+ +LF++++K+N+ YG G
Sbjct: 403 RFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIK 462
Query: 371 XXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
FI LP+G +T++ ++G LS GQ+Q +AI RA L +P+IL+LDEATS +
Sbjct: 463 EAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNV 522
Query: 431 DAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
D ++E+ +Q A+ K+M +T++I+AHRL+T++NADLI V+ G++VE
Sbjct: 523 DTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVE 569
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 247 bits (631), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 146/467 (31%), Positives = 250/467 (53%), Gaps = 8/467 (1%)
Query: 14 RIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGF 73
++R + + FFD+E+ +G ++ R++ D+ + + + ++ A+ IG
Sbjct: 99 QMRRRLFNHFMHMPVRFFDQES-TGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLL 157
Query: 74 VIALSKGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTV 133
+ W L+LV++ P + +S K++ QTA + AEQ + + V
Sbjct: 158 TLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVV 217
Query: 134 ASFTGEKQAVAKYNESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFGGKMILEK 193
S+ G++ ++++ ++ + + + S A+ F + +
Sbjct: 218 LSYGGQEVERKRFDK-VSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIR 276
Query: 194 GYKGGDVINVIFCVMIGSM-SLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGV 252
V+F M G M L + S F G AA LF ++ L D+
Sbjct: 277 AELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMD---LETERDNGKY 333
Query: 253 KLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF 312
+ + + G++++KD+ F+Y + + + S SIP G T ALVG+SGSGKST+ +L RF
Sbjct: 334 EAERVNGEVDVKDVTFTYQGKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392
Query: 313 YDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXX-XX 371
YD +G + +DG ++++++L +R LVSQ LF +I +NI Y +G
Sbjct: 393 YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQ 452
Query: 372 XXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
+FI+++PQGLDT++GE+GT LSGGQ+QR+AIARA+L+D +L+LDEATSALD
Sbjct: 453 AARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
Query: 432 AESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
ESER +Q ALD++ N+T +++AHRLST+ AD I V+ +G+++E+
Sbjct: 513 TESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIER 559
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 244 bits (624), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 148/453 (32%), Positives = 242/453 (53%), Gaps = 8/453 (1%)
Query: 28 IGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVM 87
+ FFDK++ +G ++ R++ D+ + S + ++ A+ IG F++ W L++++
Sbjct: 113 VSFFDKQS-TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIIL 171
Query: 88 LSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYN 147
+ P + + V+S ++ Q AEQ + + V F G++ +++
Sbjct: 172 IVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFD 231
Query: 148 ESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFGGKMILEKGYKGGDVINVIFCV 207
+ + G+ + + ++ + G I V+F
Sbjct: 232 KVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAG-TITVVFSS 290
Query: 208 MIGSMSLGQASPCISA-FAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDI 266
MI M ++ ++A F G AA LF ++ + D ++ GD+E +++
Sbjct: 291 MIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSE---QEKDEGKRVIERATGDVEFRNV 347
Query: 267 YFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN 326
F+YP R + N +L IP+G T ALVG+SGSGKST+ SLI RFYD GE+L+DG +
Sbjct: 348 TFTYPGRDVPALRN-INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHD 406
Query: 327 LKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-DGXXXXXXXXXXXXXXXXKFIDSL 385
L+E+ L +R ++ LVSQ LF ++ +NI Y + + FI+ +
Sbjct: 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKM 466
Query: 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
GLDT++GE+G LSGGQ+QRIAIARA+L+D IL+LDEATSALD ESER +Q ALD++
Sbjct: 467 DNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL 526
Query: 446 MINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
NRT++++AHRLST+ AD I V+ G +VE+
Sbjct: 527 QKNRTSLVIAHRLSTIEKADEIVVVEDGVIVER 559
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 244 bits (623), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 149/453 (32%), Positives = 241/453 (53%), Gaps = 8/453 (1%)
Query: 28 IGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVM 87
+ FFDK++ +G ++ R++ D+ + S + ++ A+ IG F++ W L++++
Sbjct: 113 VAFFDKQS-TGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIIL 171
Query: 88 LSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYN 147
+ P + + V+S ++ Q AEQ + + V F G++ +++
Sbjct: 172 VVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFD 231
Query: 148 ESLTKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFGGKMILEKGYKGGDVINVIFCV 207
+ K G+ + + ++ + G I V+F
Sbjct: 232 KVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAG-TITVVFSS 290
Query: 208 MIGSMSLGQASPCISA-FAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDI 266
MI M ++ ++A F G AA LF ++ + D +D GD+E +++
Sbjct: 291 MIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE---QEKDEGKRVIDRATGDLEFRNV 347
Query: 267 YFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN 326
F+YP R + N +L IP+G T ALVG+SGSGKST+ SLI RFYD G +L+DG +
Sbjct: 348 TFTYPGREVPALRN-INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 406
Query: 327 LKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-DGXXXXXXXXXXXXXXXXKFIDSL 385
L+E+ L +R ++ LVSQ LF ++ +NI Y + + FI+ +
Sbjct: 407 LREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKM 466
Query: 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
GLDT++GE+G LSGGQ+QRIAIARA+L+D IL+LDEATSALD ESER +Q ALD++
Sbjct: 467 DNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL 526
Query: 446 MINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
NRT++++AHRLST+ AD I V+ G +VE+
Sbjct: 527 QKNRTSLVIAHRLSTIEQADEIVVVEDGIIVER 559
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 216/456 (47%), Gaps = 20/456 (4%)
Query: 31 FDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVMLSS 90
F G++I R+ D +D I + T I I LTL L
Sbjct: 111 FYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFI 170
Query: 91 IPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESL 150
P +LT V + KL A + + + I V SF E +++
Sbjct: 171 FPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKN 230
Query: 151 TKAYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIG 210
T + + I G + + G + +G
Sbjct: 231 TNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTL-----AAFVG 285
Query: 211 SMSL--GQASPCISAFAA---GQAAAYKLFEAIERKPLIDAYD-SNGVKLDDI---RGDI 261
+ L G +++F A+ ++F+ I+ + YD NGV I +G I
Sbjct: 286 YLELLFGPLRRLVASFTTLTQSFASMDRVFQLID-----EDYDIKNGVGAQPIEIKQGRI 340
Query: 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321
++ + F Y I +LSI G T A VG SG GKST+I+LI RFYD +G++L
Sbjct: 341 DIDHVSFQYNDNEAP-ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399
Query: 322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKF 381
IDG N+K+F +R +IGLV Q+ +LF+ ++K+NI G+ F
Sbjct: 400 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDF 459
Query: 382 IDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA 441
I +LPQG DT VGE G +LSGGQKQR++IAR L +P IL+LDEATSALD ESE ++QEA
Sbjct: 460 IMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 519
Query: 442 LDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
LD + +RTT+IVAHRLST+ +AD I VI G +VE
Sbjct: 520 LDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 127/446 (28%), Positives = 230/446 (51%), Gaps = 14/446 (3%)
Query: 36 HSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVMLSSIPAIV 95
H+ +I R++ D +Q+ + + ++ F+GG V+A+S L+ V++ IP IV
Sbjct: 118 HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIV 177
Query: 96 LTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEK---QAVAKYNESLTK 152
L ++ L + Q + V + + +R V +F E+ + K NESL +
Sbjct: 178 LLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRR 237
Query: 153 AYKSGVHEXXXXXXXXXXXXXXXXSSYSLAIWFGGKMILEKGYKGGDVI---NVIFCVMI 209
+ S + +WFGG ++ + G ++ N + +M
Sbjct: 238 SIISAFSLIVFALPLFIFIVNMGMIA---VLWFGGVLVRNNQMEIGSIMAYTNYLMQIMF 294
Query: 210 GSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFS 269
M +G ++ A+A ++ E + KP I+ D N + L ++ G + +++ F
Sbjct: 295 SLMMIGN---ILNFIVRASASAKRVLEVLNEKPAIEEAD-NALALPNVEGSVSFENVEFR 350
Query: 270 YPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE 329
Y + + +G + S+ G+ A++G++GSGKST+++LI R DP+ G V +D ++++
Sbjct: 351 YFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT 409
Query: 330 FQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGL 389
+LK +RG I V QE VLF+ +IK+N+ +G++ FI SLP+G
Sbjct: 410 VKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGY 469
Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINR 449
D+ V G SGGQKQR++IARA++K P++L+LD+ TS++D +E+ + + L +
Sbjct: 470 DSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGC 529
Query: 450 TTVIVAHRLSTVRNADLIAVIHQGKL 475
TT I+ ++ T AD I V+H+GK+
Sbjct: 530 TTFIITQKIPTALLADKILVLHEGKV 555
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 202 bits (513), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/219 (45%), Positives = 147/219 (67%), Gaps = 1/219 (0%)
Query: 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
+IE D+ FSYP + + + IPSGTT ALVG +GSGKST+ L+ RFYD + G+
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GD 75
Query: 320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXX 379
+ I G N+ ++ IR IG+V Q+ +LF +IK NI YGK
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLY 135
Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
FI++LP+ DT+VG G +LSGG++QRIAIAR +LKDP+I++ DEATS+LD+++E + Q
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 440 EALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
+A++ + NRT +I+AHRLST+ +A+ I ++++GK+VEK
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEK 234
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/220 (47%), Positives = 140/220 (63%), Gaps = 3/220 (1%)
Query: 260 DIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
DI ++I F Y P P I + +LSI G +VG+SGSGKST+ LI+RFY P+ G
Sbjct: 1 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXX 378
+VLIDG +L W+R ++G+V Q+ VL SI DNI+ G
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 379 XKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
FI L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
+ KI RT +I+AHRLSTV+NAD I V+ +GK+VE+
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 218
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/220 (47%), Positives = 140/220 (63%), Gaps = 3/220 (1%)
Query: 260 DIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
DI ++I F Y P P I + +LSI G +VG+SGSGKST+ LI+RFY P+ G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXX 378
+VLIDG +L W+R ++G+V Q+ VL SI DNI+ G
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 379 XKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
FI L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
+ KI RT +I+AHRLSTV+NAD I V+ +GK+VE+
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 224
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/220 (47%), Positives = 140/220 (63%), Gaps = 3/220 (1%)
Query: 260 DIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
DI ++I F Y P P I + +LSI G +VG+SGSGKST+ LI+RFY P+ G
Sbjct: 3 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXX 378
+VLIDG +L W+R ++G+V Q+ VL SI DNI+ G
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 379 XKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
FI L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
+ KI RT +I+AHRLSTV+NAD I V+ +GK+VE+
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 220
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 140/220 (63%), Gaps = 3/220 (1%)
Query: 260 DIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
DI ++I F Y P P I + +LSI G +VG++GSGKST+ LI+RFY P+ G
Sbjct: 3 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXX 378
+VLIDG +L W+R ++G+V Q+ VL SI DNI+ G
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 379 XKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
FI L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
+ KI RT +I+AHRLSTV+NAD I V+ +GK+VE+
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 220
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 140/220 (63%), Gaps = 3/220 (1%)
Query: 260 DIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
DI ++I F Y P P I + +LSI G +VG+SGSGKST+ LI+RFY P+ G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXX 378
+VLIDG +L W+R ++G+V Q+ VL SI DNI+ G
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 379 XKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
FI L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ D+ATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
+ KI RT +I+AHRLSTV+NAD I V+ +GK+VE+
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQ 224
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 139/221 (62%), Gaps = 2/221 (0%)
Query: 258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
+G IE ++++FSY G + S ++ G T ALVG SG+GKST++ L+ RFYD +
Sbjct: 51 KGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108
Query: 318 GEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXX 377
G + IDG ++ + +R IG+V Q+ VLF +I DNI YG+
Sbjct: 109 GCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAG 168
Query: 378 XXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437
I + P+G T VGE G +LSGG+KQR+AIAR ILK P I+LLDEATSALD +ER
Sbjct: 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERA 228
Query: 438 VQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
+Q +L K+ NRTT++VAHRLSTV NAD I VI G +VE+
Sbjct: 229 IQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVER 269
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 139/220 (63%), Gaps = 3/220 (1%)
Query: 260 DIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
DI ++I F Y P P I + +LSI G +VG+SGSGKST+ LI+RFY P+ G
Sbjct: 1 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXX 378
+VLIDG +L W+R ++G+V Q+ VL SI DNI+ G
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 379 XKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
FI L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
+ KI RT +I+A RLSTV+NAD I V+ +GK+VE+
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQ 218
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 192 bits (489), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/220 (47%), Positives = 139/220 (63%), Gaps = 3/220 (1%)
Query: 260 DIELKDIYFSY-PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318
DI ++I F Y P P I + +LSI G +VG+SGSGKST+ LI+RFY P+ G
Sbjct: 7 DITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 319 EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXX 378
+VLIDG +L W+R ++G+V Q+ VL SI DNI+ G
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 379 XKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
FI L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 439 QEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
+ KI RT +I+A RLSTV+NAD I V+ +GK+VE+
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQ 224
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 137/214 (64%), Gaps = 3/214 (1%)
Query: 264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 323
+ + F+Y EQI S + A G SG GKST+ SL+ERFY P AGE+ ID
Sbjct: 5 RHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 324 GVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXK-FI 382
G + L+ R +IG VSQ+ + +I++N+ YG +G + F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 383 DSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEAL 442
+++P L+T VGE G ++SGGQ+QR+AIARA L++P+IL+LDEAT++LD+ESE +VQ+AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 443 DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLV 476
D +M RTT+++AHRLST+ +AD I I +G++
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQIT 216
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 134/226 (59%), Gaps = 3/226 (1%)
Query: 256 DIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP 315
+++G ++ +D+ F+YP+ P Q+ G + ++ G ALVG +GSGKSTV +L++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 316 QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG-KDGXXXXXXXXXXX 374
G+VL+DG L ++ ++ ++ V QEP+LF S ++NI YG
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 375 XXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
FI PQG DT VGE G QLSGGQ+Q +A+ARA+++ PR+L+LD+ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 435 ERVVQEAL--DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
+ VQ L +RT +++ H+LS A I + +G + E+
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQ 237
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 168 bits (425), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 132/226 (58%), Gaps = 3/226 (1%)
Query: 256 DIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP 315
+++G ++ +D+ F+YP+ P Q+ G + ++ G ALVG +GSGKSTV +L++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 316 QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG-KDGXXXXXXXXXXX 374
G+VL+DG L ++ ++ ++ V QEP+LF S ++NI YG
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 375 XXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
FI PQG DT VGE G QLSGGQ+Q +A+ARA+++ PR+L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 435 ERVVQEAL--DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
+ VQ L +RT +++ +LS A I + +G + E+
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQ 237
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 133/224 (59%), Gaps = 3/224 (1%)
Query: 257 IRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ 316
+ G ++ +D+ F+YP+RP + G + ++ G ALVG +GSGKSTV +L++ Y P
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 317 AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG-KDGXXXXXXXXXXXX 375
G++L+DG L +++ +++ ++ V QEP +F S+++NI YG
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 376 XXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 435
FI LPQG DT V E G+QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA S+
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 436 RVVQEAL--DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
V++ L +R+ +++ LS V AD I + G + E
Sbjct: 191 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIRE 234
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 131/226 (57%), Gaps = 3/226 (1%)
Query: 256 DIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP 315
+++G ++ +D+ F+YP+ P Q+ G + ++ G ALVG +GSGKSTV +L++ Y P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 316 QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG-KDGXXXXXXXXXXX 374
G+VL+DG L ++ ++ ++ V QEP+LF S ++NI YG
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 375 XXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434
FI PQG DT VGE G QL+ GQ+Q +A+ARA+++ PR+L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 435 ERVVQEAL--DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478
+ VQ L +RT +++ +LS A I + +G + E+
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQ 237
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 110/218 (50%), Gaps = 30/218 (13%)
Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---VNLKEFQLK 333
Q N SL +P+G ++G SG+GKST+I + P G VL+DG L E +L
Sbjct: 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 78
Query: 334 WIRGKIGLVSQEPVLFTS-SIKDNI-------NYGKDGXXXXXXXXXXXXXXXXKFIDSL 385
R +IG++ Q L +S ++ N+ N KD K DS
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-DSY 137
Query: 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
P + LSGGQKQR+AIARA+ +P++LL DEATSALD + R + E L
Sbjct: 138 P-----------SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD- 185
Query: 446 MINR----TTVIVAHRLSTV-RNADLIAVIHQGKLVEK 478
INR T +++ H + V R D +AVI G+L+E+
Sbjct: 186 -INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 110/218 (50%), Gaps = 30/218 (13%)
Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---VNLKEFQLK 333
Q N SL +P+G ++G SG+GKST+I + P G VL+DG L E +L
Sbjct: 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 334 WIRGKIGLVSQEPVLFTS-SIKDNI-------NYGKDGXXXXXXXXXXXXXXXXKFIDSL 385
R +IG++ Q L +S ++ N+ N KD K DS
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-DSY 160
Query: 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
P + LSGGQKQR+AIARA+ +P++LL D+ATSALD + R + E L
Sbjct: 161 P-----------SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD- 208
Query: 446 MINR----TTVIVAHRLSTV-RNADLIAVIHQGKLVEK 478
INR T +++ H + V R D +AVI G+L+E+
Sbjct: 209 -INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 245
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 119/242 (49%), Gaps = 33/242 (13%)
Query: 255 DDIRGDIELKDI--YFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF 312
DD + I+L +I F +R Q N SL +P+G ++G SG+GKST+I +
Sbjct: 19 DDDKHXIKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
Query: 313 YDPQAGEVLIDG---VNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNI-------NYGK 361
P G VL+DG L E +L R +IG + Q L +S ++ N+ N K
Sbjct: 78 ERPTEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPK 137
Query: 362 DGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRIL 421
D K DS P + LSGGQKQR+AIARA+ +P++L
Sbjct: 138 DEVKRRVTELLSLVGLGDKH-DSYP-----------SNLSGGQKQRVAIARALASNPKVL 185
Query: 422 LLDEATSALDAESERVVQEALDKIMINR----TTVIVAHRLSTV-RNADLIAVIHQGKLV 476
L D+ATSALD + R + E L INR T +++ H V R D +AVI G+L+
Sbjct: 186 LCDQATSALDPATTRSILELLKD--INRRLGLTILLITHEXDVVKRICDCVAVISNGELI 243
Query: 477 EK 478
E+
Sbjct: 244 EQ 245
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 109/220 (49%), Gaps = 18/220 (8%)
Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
I +++ F++ +R NG + SIP G A+VGQ G GKS+++S + D G V
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXK 380
I +G + V Q+ + S+++NI +G
Sbjct: 63 AI-------------KGSVAYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLP 108
Query: 381 FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440
++ LP G T +GE G LSGGQKQR+++ARA+ + I L D+ SA+DA + + E
Sbjct: 109 DLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
Query: 441 AL---DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477
+ ++ N+T ++V H +S + D+I V+ GK+ E
Sbjct: 169 NVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISE 208
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 6/231 (2%)
Query: 248 DSNGVKLDDIR---GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKST 304
+++ VK DDI G + +KD+ Y + G I S SI G L+G++GSGKST
Sbjct: 4 ENSHVKKDDIWPSGGQMTVKDLTAKY-TEGGNAILENISFSISPGQRVGLLGRTGSGKST 62
Query: 305 VISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGX 364
++S R + + GE+ IDGV+ L+ R G++ Q+ +F+ + + N++
Sbjct: 63 LLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNA-AH 120
Query: 365 XXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 424
I+ P LD ++ + G LS G KQ + +AR++L +ILLLD
Sbjct: 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 425 EATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKL 475
E ++ LD + ++++ L + + T ++ R+ + D VI + K+
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKV 231
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 94.7 bits (234), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 105/203 (51%), Gaps = 11/203 (5%)
Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338
N +L I G AL+G SGSGKST++ I Y P +G++ D ++ E K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 339 IGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHG 397
+GLV Q L+ ++ NI + + K + +D ++ +
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH-----IDKLLNRYP 131
Query: 398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVA 455
QLSGGQ+QR+AIARA++K+P +LLLDE S LDA V+ L ++ + TTV V
Sbjct: 132 WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVT 191
Query: 456 H-RLSTVRNADLIAVIHQGKLVE 477
H + + AD IAVI +G++++
Sbjct: 192 HDQAEALAMADRIAVIREGEILQ 214
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 15/210 (7%)
Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK--EFQLKW 334
++ G ++ I G ++G SGSGKST + + D GE++IDG+NLK + L
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 76
Query: 335 IRGKIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMV 393
+R ++G+V Q LF ++ +NI + +D + GL
Sbjct: 77 VREEVGMVFQRFNLFPHMTVLNNITLAP--MKVRKWPREKAEAKAMELLDKV--GLKDKA 132
Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD--KIMINR-- 449
+ LSGGQ QR+AIARA+ +P+I+L DE TSALD E +V E L K + N
Sbjct: 133 HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQLANEGM 189
Query: 450 TTVIVAHRLSTVRNA-DLIAVIHQGKLVEK 478
T V+V H + R D + + G ++E+
Sbjct: 190 TMVVVTHEMGFAREVGDRVLFMDGGYIIEE 219
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 105/210 (50%), Gaps = 15/210 (7%)
Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK--EFQLKW 334
++ G ++ I G ++G SGSGKST + + D GE++IDG+NLK + L
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 97
Query: 335 IRGKIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMV 393
+R ++G+V Q LF ++ +NI + +D + GL
Sbjct: 98 VREEVGMVFQRFNLFPHMTVLNNITLAP--MKVRKWPREKAEAKAMELLDKV--GLKDKA 153
Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD--KIMINR-- 449
+ LSGGQ QR+AIARA+ +P+I+L DE TSALD E +V E L K + N
Sbjct: 154 HAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMKQLANEGM 210
Query: 450 TTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
T V+V H + R D + + G ++E+
Sbjct: 211 TMVVVTHEMGFAREVGDRVLFMDGGYIIEE 240
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 15/211 (7%)
Query: 264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 323
++ FS+ G + +L+I G A+ G +GSGK++++ LI + +A E +I
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLI--LGELEASEGIIK 96
Query: 324 GVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFID 383
G++ SQ + +IK+NI +G + I
Sbjct: 97 H-----------SGRVSFCSQFSWIMPGTIKENIIFGV-SYDEYRYKSVVKACQLQQDIT 144
Query: 384 SLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA-ESERVVQEAL 442
+ +T++GE G LSGGQ+ RI++ARA+ KD + LLD LD E+V + +
Sbjct: 145 KFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV 204
Query: 443 DKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473
K+M N+T ++V ++ +R AD I ++HQG
Sbjct: 205 CKLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 19/226 (8%)
Query: 249 SNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISL 308
SNG D + + ++ FS+ G + +L+I G A+ G +GSGK++++ L
Sbjct: 28 SNG----DRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLML 83
Query: 309 IERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXX 368
I + +A E +I G++ SQ + +IK+NI +G
Sbjct: 84 I--LGELEASEGIIKH-----------SGRVSFCSQFSWIMPGTIKENIIFGV-SYDEYR 129
Query: 369 XXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428
+ I + +T++GE G LSGGQ+ RI++ARA+ KD + LLD
Sbjct: 130 YKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG 189
Query: 429 ALDA-ESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473
LD E+V + + K+M N+T ++V ++ +R AD I ++HQG
Sbjct: 190 YLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 104/202 (51%), Gaps = 11/202 (5%)
Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339
+G S + G AL+G SG GK+T + ++ Y P +GE+ D V + + K+ ++
Sbjct: 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REV 77
Query: 340 GLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGT 398
G+V Q L+ ++ +NI + + + +D ++ T
Sbjct: 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKL-----LIDNLLDRKPT 132
Query: 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAH 456
QLSGGQ+QR+A+ARA++K P++LL DE S LDA +++ + + + T+V V H
Sbjct: 133 QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTH 192
Query: 457 -RLSTVRNADLIAVIHQGKLVE 477
+ + A IAV +QGKLV+
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQ 214
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 30/211 (14%)
Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338
+ SL + SG ++G +G+GK+ + LI F+ P +G +L+DG ++ + + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 339 IGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDT------ 391
I V Q LF ++K N+ +G K I + LDT
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG----------------MRMKKIKDPKRVLDTARDLKI 117
Query: 392 --MVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-IN 448
++ + LSGG++QR+A+ARA++ +P+ILLLDE SALD ++ +E L + N
Sbjct: 118 EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN 177
Query: 449 RTTVI-VAHRLSTVR-NADLIAVIHQGKLVE 477
+ TV+ + H + R AD IAV+ GKL++
Sbjct: 178 KLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 19/226 (8%)
Query: 249 SNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISL 308
SNG D + + ++ FS+ G + +L+I G A+ G +GSGK++++ L
Sbjct: 28 SNG----DRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLML 83
Query: 309 IERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXX 368
I + +A E +I G++ SQ + +IK+NI G
Sbjct: 84 I--LGELEASEGIIKH-----------SGRVSFCSQFSWIMPGTIKENIIRGV-SYDEYR 129
Query: 369 XXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428
+ I + +T++GE G LSGGQ+ RI++ARA+ KD + LLD
Sbjct: 130 YKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG 189
Query: 429 ALDA-ESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473
LD E+V + + K+M N+T ++V ++ +R AD I ++HQG
Sbjct: 190 YLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 19/226 (8%)
Query: 249 SNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISL 308
SNG D + + ++ FS+ G + +L+I G A+ G +GSGK++++ L
Sbjct: 28 SNG----DRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLML 83
Query: 309 IERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXX 368
I + +A E +I G++ SQ + +IK+NI G
Sbjct: 84 I--LGELEASEGIIKH-----------SGRVSFCSQFSWIMPGTIKENIISGV-SYDEYR 129
Query: 369 XXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428
+ I + +T++GE G LSGGQ+ RI++ARA+ KD + LLD
Sbjct: 130 YKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG 189
Query: 429 ALDA-ESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473
LD E+V + + K+M N+T ++V ++ +R AD I ++HQG
Sbjct: 190 YLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 17/221 (7%)
Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
IE + YP G + G S I G L+G SGSGK+T++ LI P G+V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXX 379
I G + + + + +GLV Q LF ++ DN+++G
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER--- 436
+F+ L++ +LSGGQ+QR+A+ARA+ P++LL DE +A+D + R
Sbjct: 131 RFMR-----LESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELR 185
Query: 437 -VVQEALDKIMINRTTVIVAH-RLSTVRNADLIAVIHQGKL 475
V++ D++ + T+V V H + + AD + V+H+G +
Sbjct: 186 TFVRQVHDEMGV--TSVFVTHDQEEALEVADRVLVLHEGNV 224
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 111/229 (48%), Gaps = 26/229 (11%)
Query: 249 SNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISL 308
SNG D + + ++ FS+ G + +L+I G A+ G +GSGK++++ L
Sbjct: 28 SNG----DRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLML 83
Query: 309 IERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNI---NYGKDGXX 365
I + +A E +I G++ SQ + +IK+NI +Y +
Sbjct: 84 I--LGELEASEGIIKH-----------SGRVSFCSQFSWIMPGTIKENIIGVSYDE---- 126
Query: 366 XXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 425
+ I + +T++GE G LSGGQ+ RI++ARA+ KD + LLD
Sbjct: 127 -YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDS 185
Query: 426 ATSALDA-ESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473
LD E+V + + K+M N+T ++V ++ +R AD I ++HQG
Sbjct: 186 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 234
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 116/234 (49%), Gaps = 20/234 (8%)
Query: 261 IELKDIYFSYPSRPGE-QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ--- 316
I ++D+ Y R G + +G SL I + A+VG+S SGKST+I + + P
Sbjct: 5 IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 317 -AGEVLIDGVNL---KEFQLKWIRGK-IGLVSQEPVLFTSSIKDNINYGKD-----GXXX 366
+G VL G +L +E +L+ IR K I LV Q + I + KD G
Sbjct: 65 LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRW 124
Query: 367 XXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 426
+ + P+ + + + QLSGG KQR+ IA A+L DP +L+LDE
Sbjct: 125 SHSELIEKASEKLRMVRLNPEAV---LNSYPLQLSGGMKQRVLIALALLLDPVVLILDEP 181
Query: 427 TSALDAESE-RVVQEALDKIMINRTTVI-VAHRLSTVRN-ADLIAVIHQGKLVE 477
TSALD ++ ++Q + + + T+I V H ++ AD +AVI+ G LVE
Sbjct: 182 TSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVE 235
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 102/212 (48%), Gaps = 22/212 (10%)
Query: 266 IYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV 325
++FS S G + + I G A+ G +G+GK++++ +I +P G++ G
Sbjct: 41 LFFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG- 99
Query: 326 NLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNI---NYGKDGXXXXXXXXXXXXXXXXKFI 382
+I SQ + +IK+NI +Y + + I
Sbjct: 100 ------------RISFCSQNSWIMPGTIKENIIGVSYDE-----YRYRSVIKACQLEEDI 142
Query: 383 DSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEA 441
+ + ++GE G LSGGQ+ RI++ARA+ KD + LLD LD +E+ + +
Sbjct: 143 SKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 202
Query: 442 LDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473
+ K+M N+T ++V ++ ++ AD I ++H+G
Sbjct: 203 VCKLMANKTRILVTSKMEHLKKADKILILHEG 234
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 15/200 (7%)
Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW 334
G + + I G A+ G +G+GK++++ +I +P G++ G
Sbjct: 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------- 69
Query: 335 IRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVG 394
+I SQ + +IK+NI +G + I + + ++G
Sbjct: 70 ---RISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLG 125
Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEALDKIMINRTTVI 453
E G LSGGQ+ RI++ARA+ KD + LLD LD +E+ + + + K+M N+T ++
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 185
Query: 454 VAHRLSTVRNADLIAVIHQG 473
V ++ ++ AD I ++H+G
Sbjct: 186 VTSKMEHLKKADKILILHEG 205
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 15/200 (7%)
Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW 334
G + + I G A+ G +G+GK++++ +I +P G++ G
Sbjct: 32 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------- 81
Query: 335 IRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVG 394
+I SQ + +IK+NI +G + I + + ++G
Sbjct: 82 ---RISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLG 137
Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEALDKIMINRTTVI 453
E G LSGGQ+ RI++ARA+ KD + LLD LD +E+ + + + K+M N+T ++
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 197
Query: 454 VAHRLSTVRNADLIAVIHQG 473
V ++ ++ AD I ++H+G
Sbjct: 198 VTSKMEHLKKADKILILHEG 217
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 120/231 (51%), Gaps = 25/231 (10%)
Query: 261 IELKDIYFSYPSRPGEQI---FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
I+LK++ +Y + GE+I +L+I G +++G SGSGKST++++I P
Sbjct: 2 IKLKNVTKTY--KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE 59
Query: 318 GEVLIDGV---NLKEFQLKWIR-GKIGLVSQE----PVLFT-SSIKDNINYGKDGXXXXX 368
GEV ID + +L + +L IR KIG V Q+ P+L +++ + + G
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 369 XXXXXXXXXXXKFIDSLPQG-LDTMVGEHG-TQLSGGQKQRIAIARAILKDPRILLLDEA 426
+ ++ L L+ H QLSGGQ+QR+AIARA+ +P I+L D+
Sbjct: 120 ERRK-------RALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 427 TSALDAESERVVQEALDKIMIN--RTTVIVAHRLSTVRNADLIAVIHQGKL 475
T ALD+++ + + L K+ +T V+V H ++ R + I + G++
Sbjct: 173 TGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 119/231 (51%), Gaps = 25/231 (10%)
Query: 261 IELKDIYFSYPSRPGEQI---FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
I+LK++ +Y + GE+I +L+I G ++ G SGSGKST +++I P
Sbjct: 2 IKLKNVTKTY--KXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTE 59
Query: 318 GEVLIDGV---NLKEFQLKWIR-GKIGLVSQE----PVLFT-SSIKDNINYGKDGXXXXX 368
GEV ID + +L + +L IR KIG V Q+ P+L +++ + + G
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGE 119
Query: 369 XXXXXXXXXXXKFIDSLPQG-LDTMVGEHG-TQLSGGQKQRIAIARAILKDPRILLLDEA 426
+ ++ L L+ H QLSGGQ+QR+AIARA+ +P I+L DE
Sbjct: 120 ERRK-------RALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEP 172
Query: 427 TSALDAESERVVQEALDKIMIN--RTTVIVAHRLSTVRNADLIAVIHQGKL 475
T ALD+++ + + L K+ +T V+V H ++ R + I + G++
Sbjct: 173 TGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 15/207 (7%)
Query: 268 FSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL 327
FS S G + + I G A+ G +G+GK++++ +I +P G++ G
Sbjct: 43 FSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--- 99
Query: 328 KEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQ 387
+I SQ + +IK+NI G + I +
Sbjct: 100 ----------RISFCSQFSWIMPGTIKENIIAGV-SYDEYRYRSVIKACQLEEDISKFAE 148
Query: 388 GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEALDKIM 446
+ ++GE G LSGGQ+ RI++ARA+ KD + LLD LD +E+ + + + K+M
Sbjct: 149 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 208
Query: 447 INRTTVIVAHRLSTVRNADLIAVIHQG 473
N+T ++V ++ ++ AD I ++H+G
Sbjct: 209 ANKTRILVTSKMEHLKKADKILILHEG 235
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 100/210 (47%), Gaps = 22/210 (10%)
Query: 268 FSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL 327
FS S G + + I G A+ G +G+GK++++ +I +P G++ G
Sbjct: 43 FSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--- 99
Query: 328 KEFQLKWIRGKIGLVSQEPVLFTSSIKDNI---NYGKDGXXXXXXXXXXXXXXXXKFIDS 384
+I SQ + +IK+NI +Y + + I
Sbjct: 100 ----------RISFCSQNSWIMPGTIKENIIGVSYDE-----YRYRSVIKACQLEEDISK 144
Query: 385 LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEALD 443
+ + ++GE G LSGGQ+ RI++ARA+ KD + LLD LD +E+ + + +
Sbjct: 145 FAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVC 204
Query: 444 KIMINRTTVIVAHRLSTVRNADLIAVIHQG 473
K+M N+T ++V ++ ++ AD I ++H+G
Sbjct: 205 KLMANKTRILVTSKMEHLKKADKILILHEG 234
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 78.6 bits (192), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 25/231 (10%)
Query: 261 IELKDIYFSYPSRPGEQI---FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317
++LK++ +Y + GE+I +L+I G +++G SGSGKST++++I P
Sbjct: 2 VKLKNVTKTY--KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE 59
Query: 318 GEVLIDGV---NLKEFQLKWIR-GKIGLVSQE----PVLFT-SSIKDNINYGKDGXXXXX 368
GEV ID + +L + +L IR KIG V Q+ P+L +++ + + G
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE 119
Query: 369 XXXXXXXXXXXKFIDSLPQG-LDTMVGEHG-TQLSGGQKQRIAIARAILKDPRILLLDEA 426
+ ++ L L+ H QLSGGQ+QR+AIARA+ +P I+L D+
Sbjct: 120 ERRK-------RALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 427 TSALDAESERVVQEALDKIMIN--RTTVIVAHRLSTVRNADLIAVIHQGKL 475
T ALD+++ + + L K+ +T V+V H ++ R + I + G++
Sbjct: 173 TWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 13/191 (6%)
Query: 292 AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS 351
L+G +G+GKS + LI P GEV ++G ++ L R IG V Q+ LF
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPH 84
Query: 352 -SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI 410
S+ NI YG G+ ++ +LSGG++QR+A+
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEK-------LGIAHLLDRKPARLSGGERQRVAL 137
Query: 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRL-STVRNADLI 467
ARA++ PR+LLLDE SA+D +++ V+ E L + + + V H L AD +
Sbjct: 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEV 197
Query: 468 AVIHQGKLVEK 478
AV+ G++VEK
Sbjct: 198 AVMLNGRIVEK 208
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 25/205 (12%)
Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342
SL I G + G +GSGKST++ ++ +P +G+VL DG K ++ IR IG+
Sbjct: 29 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRNIGIA 85
Query: 343 SQEPV--LFTSSIKDNINYG-------KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMV 393
Q P F + D + + +D F D +P
Sbjct: 86 FQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP------- 138
Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDK-IMINRTTV 452
LSGG+K+R+AIA I+ +P IL+LDE LD E + + ++K + +T +
Sbjct: 139 ----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVI 194
Query: 453 IVAHRLSTVRN-ADLIAVIHQGKLV 476
+++H + TV N D + V+ +GK V
Sbjct: 195 LISHDIETVINHVDRVVVLEKGKKV 219
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 22/203 (10%)
Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW 334
G + + I G A+ G +G+GK++++ +I +P G++ G
Sbjct: 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------- 69
Query: 335 IRGKIGLVSQEPVLFTSSIKDNI---NYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDT 391
+I SQ + +IK+NI +Y + + I + +
Sbjct: 70 ---RISFCSQFSWIMPGTIKENIIGVSYDE-----YRYRSVIKACQLEEDISKFAEKDNI 121
Query: 392 MVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEALDKIMINRT 450
++GE G LSGGQ+ RI++ARA+ KD + LLD LD +E+ + + + K+M N+T
Sbjct: 122 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 181
Query: 451 TVIVAHRLSTVRNADLIAVIHQG 473
++V ++ ++ AD I ++H+G
Sbjct: 182 RILVTSKMEHLKKADKILILHEG 204
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 25/205 (12%)
Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342
SL I G + G +GSGKST++ ++ +P +G+VL DG K ++ IR IG+
Sbjct: 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRNIGIA 83
Query: 343 SQEPV--LFTSSIKDNINYG-------KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMV 393
Q P F + D + + +D F D +P
Sbjct: 84 FQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP------- 136
Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDK-IMINRTTV 452
LSGG+K+R+AIA I+ +P IL+LDE LD E + + ++K + +T +
Sbjct: 137 ----FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVI 192
Query: 453 IVAHRLSTVRN-ADLIAVIHQGKLV 476
+++H + TV N D + V+ +GK V
Sbjct: 193 LISHDIETVINHVDRVVVLEKGKKV 217
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 15/218 (6%)
Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
IEL + F Y G+ + + +G +VG++GSGK+T++ ++ AGE+
Sbjct: 12 IELNSVSFRYN---GDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPV--LFTSSIKDNINYGKDGXXXXXXXXXXXXXXX 378
+DG F L R +G V Q P + +++++++ + +
Sbjct: 68 FLDGSPADPFLL---RKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKV 124
Query: 379 XKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVV 438
+ + GL + LSGGQKQR+AIA + +D R L LDE S LD S+R +
Sbjct: 125 LELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREI 179
Query: 439 QEALDKIMIN-RTTVIVAHRLSTVRNADLIAVIHQGKL 475
+ L+ + + ++V H L + + D I I G +
Sbjct: 180 FQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTI 217
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 106/206 (51%), Gaps = 11/206 (5%)
Query: 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL--KEFQLKWI 335
+ N SLS+ G ++G SG GK+T++ + F P +GE+ + G + K L
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 336 RGKIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVG 394
++G + QE VLF ++ NI YG + G+ + G
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT-----GISELAG 133
Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTV 452
+ +LSGGQ+QR A+ARA+ DP ++LLDE SALD + R ++E + + ++ V
Sbjct: 134 RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAV 193
Query: 453 IVAH-RLSTVRNADLIAVIHQGKLVE 477
V+H R ++ AD IAV+ QG++++
Sbjct: 194 FVSHDREEALQYADRIAVMKQGRILQ 219
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 15/200 (7%)
Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW 334
G + + I G A+ G +G+GK++++ +I +P G++ G
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------- 99
Query: 335 IRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVG 394
+I SQ + +IK+NI +G + I + + ++G
Sbjct: 100 ---RISFCSQFSWIMPGTIKENIIFGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLG 155
Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEALDKIMINRTTVI 453
E G LS GQ+ +I++ARA+ KD + LLD LD +E+ + + + K+M N+T ++
Sbjct: 156 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 454 VAHRLSTVRNADLIAVIHQG 473
V ++ ++ AD I ++H+G
Sbjct: 216 VTSKMEHLKKADKILILHEG 235
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 102/202 (50%), Gaps = 11/202 (5%)
Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339
N +L+I G L+G SG GK+T + +I +P G + ++ K I
Sbjct: 29 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 86
Query: 340 GLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGT 398
+V Q ++ ++ +NI + ++ L Q ++ ++ +
Sbjct: 87 SMVFQSYAVWPHMTVYENIAF----PLKIKKFPKDEIDKRVRWAAELLQ-IEELLNRYPA 141
Query: 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAH 456
QLSGGQ+QR+A+ARAI+ +P +LL+DE S LDA+ ++ + K+ + TT+ V H
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 457 -RLSTVRNADLIAVIHQGKLVE 477
++ + D IAV+++G+L++
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQ 223
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 102/202 (50%), Gaps = 11/202 (5%)
Query: 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339
N +L+I G L+G SG GK+T + +I +P G + ++ K I
Sbjct: 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85
Query: 340 GLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGT 398
+V Q ++ ++ +NI + ++ L Q ++ ++ +
Sbjct: 86 SMVFQSYAVWPHMTVYENIAF----PLKIKKFPKDEIDKRVRWAAELLQ-IEELLNRYPA 140
Query: 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAH 456
QLSGGQ+QR+A+ARAI+ +P +LL+DE S LDA+ ++ + K+ + TT+ V H
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 457 -RLSTVRNADLIAVIHQGKLVE 477
++ + D IAV+++G+L++
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQ 222
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 96/203 (47%), Gaps = 22/203 (10%)
Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW 334
G + + I G A+ G +G+GK++++ +I +P G++ G
Sbjct: 50 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---------- 99
Query: 335 IRGKIGLVSQEPVLFTSSIKDNI---NYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDT 391
+I SQ + +IK+NI +Y + + I + +
Sbjct: 100 ---RISFCSQFSWIMPGTIKENIIGVSYDE-----YRYRSVIKACQLEEDISKFAEKDNI 151
Query: 392 MVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESER-VVQEALDKIMINRT 450
++GE G LS GQ+ +I++ARA+ KD + LLD LD +E+ + + + K+M N+T
Sbjct: 152 VLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKT 211
Query: 451 TVIVAHRLSTVRNADLIAVIHQG 473
++V ++ ++ AD I ++H+G
Sbjct: 212 RILVTSKMEHLKKADKILILHEG 234
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 113/224 (50%), Gaps = 27/224 (12%)
Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK------ 328
G ++ G SL +G +++G SGSGKST + I P G ++++G N+
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
Query: 329 -------EFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXK 380
+ QL+ +R ++ +V Q L++ ++ +N+ K
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP--IQVLGLSKHDARERALK 135
Query: 381 FIDSLPQGLDTMV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA----ESE 435
++ + G+D G++ LSGGQ+QR++IARA+ +P +LL DE TSALD E
Sbjct: 136 YLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL 193
Query: 436 RVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478
R++Q+ ++ +T V+V H + R+ + + +HQGK+ E+
Sbjct: 194 RIMQQLAEE---GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 234
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 18/209 (8%)
Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID----GVNLKEFQLKW 334
+ +++I +G ++G SG+GK+T + +I P GE+ D N K
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 335 IRGKIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMV 393
R KIG+V Q L+ + + +NI + K +D + ++
Sbjct: 81 DR-KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILD-----IHHVL 134
Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA---ESER-VVQEALDKIMINR 449
+LSGGQ+QR+A+ARA++KDP +LLLDE S LDA +S R +V+E ++ +
Sbjct: 135 NHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV-- 192
Query: 450 TTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
T ++V+H + + AD + V+ +GKLV+
Sbjct: 193 TLLVVSHDPADIFAIADRVGVLVKGKLVQ 221
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 95/209 (45%), Gaps = 17/209 (8%)
Query: 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-R 336
+ N SL I SG A++G +G+GKST++ L+ + P GE + G NL +Q K + R
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 337 GKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEH 396
+ + + F S+ + I G+ +L Q D V
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-DYRV--- 141
Query: 397 GTQLSGGQKQRIAIARAILK------DPRILLLDEATSALDAESERVVQEALDKIMINRT 450
LSGG++QR+ +AR + + PR L LDE TSALD ++ L ++
Sbjct: 142 ---LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP 198
Query: 451 TVI--VAHRLS-TVRNADLIAVIHQGKLV 476
+ V H L+ AD I ++ QGKLV
Sbjct: 199 LAVCCVLHDLNLAALYADRIMLLAQGKLV 227
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 109/220 (49%), Gaps = 20/220 (9%)
Query: 268 FSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--V 325
+Y G G +++I G A++G +G GKST+ P +G +L D +
Sbjct: 13 LNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPI 72
Query: 326 NLKEFQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFID 383
+ + +R IG+V Q+P LF++S+ ++++G K +D
Sbjct: 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG-------AVNMKLPEDEIRKRVD 125
Query: 384 SLPQ--GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----AESERV 437
+ + G++ + + LS GQK+R+AIA ++ +P++L+LDE T+ LD +E ++
Sbjct: 126 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL 185
Query: 438 VQEALDKIMINRTTVIVAHRLSTVR-NADLIAVIHQGKLV 476
+ E ++ I T +I H + V D + V+ +G+++
Sbjct: 186 LVEMQKELGI--TIIIATHDIDIVPLYCDNVFVMKEGRVI 223
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 98/201 (48%), Gaps = 13/201 (6%)
Query: 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-DGVNLKEFQLKWIRGK--- 338
SL + G L+G SG GK+T + +I +P G++ I D + + ++ K
Sbjct: 23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82
Query: 339 IGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHG 397
I +V Q L+ ++ DNI + + + GL ++
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL-----GLTELLNRKP 137
Query: 398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI--MINRTTVIVA 455
+LSGGQ+QR+A+ RAI++ P++ L+DE S LDA+ ++ L K+ + TT+ V
Sbjct: 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVT 197
Query: 456 H-RLSTVRNADLIAVIHQGKL 475
H ++ + D IAV+++G L
Sbjct: 198 HDQVEAMTMGDRIAVMNRGVL 218
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 106/209 (50%), Gaps = 18/209 (8%)
Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID----GVNLKEFQLKW 334
+ +++I +G ++G SG+GK+T + +I P GE+ D N K
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 335 IRGKIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMV 393
R KIG+V Q L+ + + +NI + K +D + ++
Sbjct: 81 DR-KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILD-----IHHVL 134
Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA---ESER-VVQEALDKIMINR 449
+LSG Q+QR+A+ARA++KDP +LLLDE S LDA +S R +V+E ++ +
Sbjct: 135 NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGV-- 192
Query: 450 TTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477
T ++V+H + + AD + V+ +GKLV+
Sbjct: 193 TLLVVSHDPADIFAIADRVGVLVKGKLVQ 221
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 23/194 (11%)
Query: 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-----VNLKE 329
G +I G SLS+ G +++G SGSGKST++ ++ P G+V ++G N KE
Sbjct: 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKE 75
Query: 330 FQLKWIRGKIGLVSQ------EPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFID 383
L R K+G V Q E + I + GK +
Sbjct: 76 LSLLRNR-KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEY--------LLS 126
Query: 384 SLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD 443
L GL + +LSGG++QR+AIARA+ +P +L DE T LD+ + + V +
Sbjct: 127 EL--GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 444 KIMINRTT-VIVAH 456
KI T+ V+V H
Sbjct: 185 KINEGGTSIVMVTH 198
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 15/203 (7%)
Query: 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-----R 336
SL I G L+G SG GK+T + I +P G++ I+ NL K +
Sbjct: 25 LSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIED-NLVADPEKGVFVPPKE 83
Query: 337 GKIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGE 395
+ V Q L+ ++ DNI + + + GL ++
Sbjct: 84 RDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXL-----GLTELLNR 138
Query: 396 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI--MINRTTVI 453
+LSGGQ+QR+A+ RAI++ P++ L DE S LDA+ + L K+ + TT+
Sbjct: 139 KPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIY 198
Query: 454 VAH-RLSTVRNADLIAVIHQGKL 475
V H ++ D IAV ++G+L
Sbjct: 199 VTHDQVEAXTXGDRIAVXNKGEL 221
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 97/205 (47%), Gaps = 11/205 (5%)
Query: 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIR 336
+I G S I G L+G +G+GK+T + +I P +G V + G N+ E + +R
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVR 87
Query: 337 GKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQ--GLDTMVG 394
I + +E + + I Y + + ++ + GL +
Sbjct: 88 KLISYLPEEAGAYRNM--QGIEYLR----FVAGFYASSSSEIEEMVERATEIAGLGEKIK 141
Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIV 454
+ + S G +++ IARA++ +PR+ +LDE TS LD + R V++ L + T++V
Sbjct: 142 DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILV 201
Query: 455 -AHRLSTVRN-ADLIAVIHQGKLVE 477
+H + V D IA+IH G +VE
Sbjct: 202 SSHNMLEVEFLCDRIALIHNGTIVE 226
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 23/190 (12%)
Query: 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRG 337
+F + + G A++GQ+G GKST++ L+ + P G++ +
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------------EVYQ 66
Query: 338 KIGLVSQ---EPVLFTSSIKDNINYGKDGXXXXXXXXXXX-XXXXXKFIDSLPQGLDTMV 393
IG V Q P F S+ D + G+ + +D L L +
Sbjct: 67 SIGFVPQFFSSP--FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL--NLTHLA 122
Query: 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTT 451
T LSGGQ+Q I IARAI + +++LLDE TSALD ++ +V L + N T
Sbjct: 123 KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTV 182
Query: 452 VIVAHRLSTV 461
V H+ + V
Sbjct: 183 VFTTHQPNQV 192
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 23/206 (11%)
Query: 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL 341
+L I G VG SG GKST++ +I +G++ I + + RG +G+
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE-RG-VGM 79
Query: 342 VSQEPVLFTS-SIKDNINYG------KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVG 394
V Q L+ S+ +N+++G K +D P+ L
Sbjct: 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL----- 134
Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTV 452
SGGQ+QR+AI R ++ +P + LLDE S LDA ++ + ++ + RT +
Sbjct: 135 ------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 453 IVAH-RLSTVRNADLIAVIHQGKLVE 477
V H ++ + AD I V+ G++ +
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQ 214
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 23/206 (11%)
Query: 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL 341
+L I G VG SG GKST++ +I +G++ I + + RG +G+
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE-RG-VGM 79
Query: 342 VSQEPVLFTS-SIKDNINYG------KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVG 394
V Q L+ S+ +N+++G K +D P+ L
Sbjct: 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL----- 134
Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTV 452
SGGQ+QR+AI R ++ +P + LLDE S LDA ++ + ++ + RT +
Sbjct: 135 ------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 453 IVAH-RLSTVRNADLIAVIHQGKLVE 477
V H ++ + AD I V+ G++ +
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQ 214
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 16/226 (7%)
Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI--ERFYDPQAG 318
+E++D++ S GE I G +L +P G AL+G +G+GKST+ ++ + Y + G
Sbjct: 4 LEIRDLWASID---GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERG 60
Query: 319 EVLIDGVNLKEFQL-KWIRGKIGLVSQEPVLFTSSIKDNI----NYGKDGXXXXXXXXXX 373
E+L+DG N+ E + R + L Q PV N K G
Sbjct: 61 EILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWT 120
Query: 374 XXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433
+ +D L + E SGG+K+R I + ++ +P +LDE S LD +
Sbjct: 121 KVKKALELLDWDESYLSRYLNEG---FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDID 177
Query: 434 SERVVQEALDKIM-INRTTVIVAH--RLSTVRNADLIAVIHQGKLV 476
+ +VV ++ + N +++ H R+ D + V+ G++V
Sbjct: 178 ALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVV 223
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 23/206 (11%)
Query: 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL 341
+L I G VG SG GKST++ +I +G++ I + + RG +G+
Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAE-RG-VGM 79
Query: 342 VSQEPVLFTS-SIKDNINYG------KDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVG 394
V Q L+ S+ +N+++G K +D P+ L
Sbjct: 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL----- 134
Query: 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTV 452
SGGQ+QR+AI R ++ +P + LLD+ S LDA ++ + ++ + RT +
Sbjct: 135 ------SGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 453 IVAH-RLSTVRNADLIAVIHQGKLVE 477
V H ++ + AD I V+ G++ +
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQ 214
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 9/202 (4%)
Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RG 337
G L +P G L+G +G+GK+T +S I Q G+++ +G ++ I R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 338 KIGLVSQEPVLFTS-SIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEH 396
I LV + +F ++ +N+ G ++I SL L + +
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXG-----AYNRKDKEGIKRDLEWIFSLFPRLKERLKQL 136
Query: 397 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAH 456
G LSGG++Q +AI RA+ P++L DE + L V E + KI TT+++
Sbjct: 137 GGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTILLVE 196
Query: 457 R--LSTVRNADLIAVIHQGKLV 476
+ L ++ A V+ G++V
Sbjct: 197 QNALGALKVAHYGYVLETGQIV 218
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 23/174 (13%)
Query: 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQ 344
I G +VG +G GK+T + ++ +P G+V D ++ ++I+ +
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--VAYKPQYIKAEYEGTVY 435
Query: 345 EPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQ 404
E + S K N N+ K P G+ + + LSGG+
Sbjct: 436 ELLSKIDSSKLNSNFYKTELLK-------------------PLGIIDLYDRNVEDLSGGE 476
Query: 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAH 456
QR+AIA +L+D I LLDE ++ LD E V A+ +M +T ++V H
Sbjct: 477 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN-RTTVIVAHR 457
QLSGG+ QR+AIA A+L+ DE +S LD V + ++ + ++V H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 458 LSTVRN-ADLIAVIH 471
L+ + +D+I V++
Sbjct: 288 LAVLDYLSDVIHVVY 302
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 23/174 (13%)
Query: 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQ 344
I G +VG +G GK+T + ++ +P G+V D ++ ++I+ +
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT--VAYKPQYIKAEYEGTVY 421
Query: 345 EPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQ 404
E + S K N N+ K P G+ + + LSGG+
Sbjct: 422 ELLSKIDSSKLNSNFYKTELLK-------------------PLGIIDLYDRNVEDLSGGE 462
Query: 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAH 456
QR+AIA +L+D I LLDE ++ LD E V A+ +M +T ++V H
Sbjct: 463 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN-RTTVIVAHR 457
QLSGG+ QR+AIA A+L+ DE +S LD V + ++ + ++V H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 458 LSTVRN-ADLIAVIH 471
L+ + +D+I V++
Sbjct: 274 LAVLDYLSDVIHVVY 288
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 14/228 (6%)
Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI--ERFYDPQAG 318
+ +KD++ S + I G SL + G A++G +GSGKST+ + + Y+ G
Sbjct: 21 LSIKDLHVSVEDKA---ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 77
Query: 319 EVLIDGVNLKEFQLKWIRGK-IGLVSQEPVLFTSS-----IKDNINYGKDGXXXXXXXXX 372
V G +L + G+ I + Q PV ++ +N +
Sbjct: 78 TVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRF 137
Query: 373 XXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
+ I L D + SGG+K+R I + + +P + +LDE+ S LD
Sbjct: 138 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 197
Query: 433 ESERVVQEALDKIMI-NRTTVIVAH--RLSTVRNADLIAVIHQGKLVE 477
++ +VV + ++ + R+ +IV H R+ D + V++QG++V+
Sbjct: 198 DALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 14/228 (6%)
Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI--ERFYDPQAG 318
+ +KD++ S + I G SL + G A++G +GSGKST+ + + Y+ G
Sbjct: 2 LSIKDLHVSVEDKA---ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 58
Query: 319 EVLIDGVNLKEFQLKWIRGK-IGLVSQEPVLFTSS-----IKDNINYGKDGXXXXXXXXX 372
V G +L + G+ I + Q PV ++ +N +
Sbjct: 59 TVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRF 118
Query: 373 XXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432
+ I L D + SGG+K+R I + + +P + +LDE+ S LD
Sbjct: 119 DFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 178
Query: 433 ESERVVQEALDKIMI-NRTTVIVAH--RLSTVRNADLIAVIHQGKLVE 477
++ +VV + ++ + R+ +IV H R+ D + V++QG++V+
Sbjct: 179 DALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 226
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL--KEFQLKWIR 336
+G S+S+ G ++G +GSGKST+I++I F G V + ++ KE +
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 337 GKIGLVSQEPVLFTSSIKDN-----INYGKDGXXXX-----XXXXXXXXXXXXKFIDSLP 386
G + L ++ +N IN G+ K ++ L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL- 141
Query: 387 QGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESERVVQEALDKI 445
L + +LSGGQ + + I RA++ +P+++++DE + + + + L+
Sbjct: 142 -KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 446 MINRTTVIVAHRLSTVRNA-DLIAVIHQGKLV 476
T +I+ HRL V N D + V+ G+++
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 12/210 (5%)
Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL--KEFQLKWIR 336
+G S+S+ G ++G +GSGKST+I++I F G V + ++ KE +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 337 GKIGLVSQEPVLFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQG-------- 388
G + L ++ +N+ G+ K + + +
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESERVVQEALDKIMI 447
L + +LSGGQ + + I RA++ +P+++++DE + + + + L+
Sbjct: 143 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 202
Query: 448 NRTTVIVAHRLSTVRNA-DLIAVIHQGKLV 476
T +I+ HRL V N D + V+ G+++
Sbjct: 203 GITFLIIEHRLDIVLNYIDHLYVMFNGQII 232
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 97/207 (46%), Gaps = 36/207 (17%)
Query: 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320
+E++D+ Y +P + +++I G G +G GK+T++ I + P GE+
Sbjct: 11 LEIRDLSVGY-DKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNIN-----YGKDGXXXXXXXXXXX 374
+ +GV + + ++GKI + +E ++ S++D + YG
Sbjct: 67 IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYG-------------V 108
Query: 375 XXXXXKFIDSLPQ----GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430
+ +D+L L +GE LS G +R+ +A +L + I +LD+ A+
Sbjct: 109 KVNKNEIMDALESVEVLDLKKKLGE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 164
Query: 431 DAESERVVQEALDKIMINRTTVIVAHR 457
D +S+ V +++ +I+ + VI++ R
Sbjct: 165 DEDSKHKVLKSILEILKEKGIVIISSR 191
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL--KEFQLKWIR 336
+G S+S+ G ++G +GSGKST+I++I F G V + ++ KE +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 337 GKIGLVSQEPVLFTSSIKDN-----INYGKDGXXXX-----XXXXXXXXXXXXKFIDSLP 386
G + L ++ +N IN G+ K ++ L
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL- 141
Query: 387 QGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESERVVQEALDKI 445
L + +LSGGQ + + I RA++ +P+++++D+ + + + + L+
Sbjct: 142 -KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELK 200
Query: 446 MINRTTVIVAHRLSTVRNA-DLIAVIHQGKLV 476
T +I+ HRL V N D + V+ G+++
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
P G+ + +LSGG+ QR+AIA +L+D I LLDE ++ LD E V A+ +
Sbjct: 388 PLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
Query: 446 M--INRTTVIVAH 456
+T ++V H
Sbjct: 448 XEKNEKTALVVEH 460
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN 448
L+ ++ LSGG+ QR+AIA A+L++ DE +S LD A+ ++
Sbjct: 148 LENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE 207
Query: 449 -RTTVIVAHRLSTVRN-ADLIAVIH 471
++ ++V H L+ + +D+I V++
Sbjct: 208 GKSVLVVEHDLAVLDYLSDIIHVVY 232
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 36/199 (18%)
Query: 268 FSYPSRPGEQIFNGFSLSIPSGTTA-----ALVGQSGSGKSTVISLIERFYDPQAGEVLI 322
FSYPS Q F L++ G + ++G++G+GK+T+I L+ P G+ I
Sbjct: 354 FSYPSLKKTQ--GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-I 410
Query: 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD---NINYGKDGXXXXXXXXXXXXXXXX 379
+N+ K G V Q LF I+ N + D
Sbjct: 411 PKLNVSMKPQKIAPKFPGTVRQ---LFFKKIRGQFLNPQFQTDVVK-------------- 453
Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
P +D ++ + LSGG+ QR+AI A+ I L+DE ++ LD+E +
Sbjct: 454 ------PLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICS 507
Query: 440 EALDKIMIN--RTTVIVAH 456
+ + + +++ +T IV H
Sbjct: 508 KVIRRFILHNKKTAFIVEH 526
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 30/214 (14%)
Query: 280 NGFSLS-IPS---GTTAALVGQSGSGKSTVISLIE--------RFYDPQAGEVLID---G 324
N F L +P+ G LVG +G GKST + ++ RF DP + +I G
Sbjct: 90 NSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRG 149
Query: 325 VNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGXXXX-----XXXXXXXXXXXX 379
L+ + K + I + DNI G
Sbjct: 150 SELQNYFTKMLEDDIK------AIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVK 203
Query: 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439
++I L L+ ++ +LSGG+ QR AI + +++ + + DE +S LD +
Sbjct: 204 RYIKIL--QLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAA 261
Query: 440 EALDKIMINRTTVI-VAHRLSTVRN-ADLIAVIH 471
+ + ++ VI V H LS + +D + +I+
Sbjct: 262 QIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIY 295
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 393 VGEHGTQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESERVVQEALDKIMINR 449
+G+ T LSGG+ QRI +A + K + +LDE T L E R + E L +++
Sbjct: 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858
Query: 450 TTVIV-AHRLSTVRNADLI 467
TVIV H L ++NAD I
Sbjct: 859 NTVIVIEHNLDVIKNADHI 877
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 397 GTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDA-ESERVVQEALDKIM-INRTTV 452
T LSGG+ QRI +A I I +LDE T L ++ER+++ L K+ + T +
Sbjct: 462 ATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIK-TLKKLRDLGNTVI 520
Query: 453 IVAHRLSTVRNADLI 467
+V H +RNAD I
Sbjct: 521 VVEHDEEVIRNADHI 535
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
D M+ + LSGG K ++A+ARA+L++ ILLLDE T+ LD
Sbjct: 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 388 GLDTMVGEHGT--QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
GLD + H LSGGQK ++ +A + P +++LDE T+ LD +S + +AL +
Sbjct: 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE- 946
Query: 446 MINRTTVIVAHRLSTVRN 463
+I+ H +N
Sbjct: 947 -FEGGVIIITHSAEFTKN 963
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 261 IELKDIYFSYPSRPGEQIFN-GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
+++ ++ F YP QI + F S+ S A++G +G+GKST+I+++ P +GE
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSS--RIAVIGPNGAGKSTLINVLTGELLPTSGE 729
Query: 320 V 320
V
Sbjct: 730 V 730
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 51/221 (23%)
Query: 279 FNGFSLSIPSGTT-AALVGQSGSGKSTVI-----SLIERFYDPQAGEVLIDGVNLKEFQL 332
F F L P T ++G++G GK+TV+ +I F DP + +V D V L
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNS-KVGKDEV------L 66
Query: 333 KWIRGKIGLVSQEPVLFTSSIK--DNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLD 390
K RGK + + L+++ +K I Y KF+ +
Sbjct: 67 KRFRGK-EIYNYFKELYSNELKIVHKIQY---------------VEYASKFLKGTVNEIL 110
Query: 391 TMVGEHGTQ-------------------LSGGQKQRIAIARAILKDPRILLLDEATSALD 431
T + E G + LSGG QR+ +A ++L++ + + D+ +S LD
Sbjct: 111 TKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLD 170
Query: 432 AESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIH 471
+ +A+ +++ N+ ++V H L + DLI +I+
Sbjct: 171 VRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIY 211
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 388 GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI 447
L ++ + LSGG+ Q++ IA + K+ + +LD+ +S LD E +V +A+ ++
Sbjct: 374 NLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR 433
Query: 448 NR--TTVIVAHRLS 459
R T I+ H LS
Sbjct: 434 ERKAVTFIIDHDLS 447
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
D + + LSGG K ++A+ARA+L++ ILLLDE T+ LD
Sbjct: 539 DEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 388 GLDTMVGEHGT--QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
GLD + H LSGGQK ++ +A + P +++LDE T+ LD +S + +AL +
Sbjct: 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE- 946
Query: 446 MINRTTVIVAHRLSTVRN 463
+I+ H +N
Sbjct: 947 -FEGGVIIITHSAEFTKN 963
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 261 IELKDIYFSYPSRPGEQIFN-GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
+++ + F YP QI + F S+ S A++G +G+GKST+I+++ P +GE
Sbjct: 672 VKVTNXEFQYPGTSKPQITDINFQCSLSS--RIAVIGPNGAGKSTLINVLTGELLPTSGE 729
Query: 320 V 320
V
Sbjct: 730 V 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 390 DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
D + + LSGG K ++A+ARA+L++ ILLLDE T+ LD
Sbjct: 533 DEXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 388 GLDTMVGEHGT--QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI 445
GLD + H LSGGQK ++ +A + P +++LDE T+ LD +S + +AL +
Sbjct: 882 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE- 940
Query: 446 MINRTTVIVAHRLSTVRN 463
+I+ H +N
Sbjct: 941 -FEGGVIIITHSAEFTKN 957
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 261 IELKDIYFSYPSRPGEQIFN-GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319
+++ + F YP QI + F S+ S A++G +G+GKST+I+++ P +GE
Sbjct: 666 VKVTNXEFQYPGTSKPQITDINFQCSLSS--RIAVIGPNGAGKSTLINVLTGELLPTSGE 723
Query: 320 V 320
V
Sbjct: 724 V 724
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 18/170 (10%)
Query: 273 RPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE--F 330
+ G+ I S I G L G +G+GK+T+++++ + +G V + G + +
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGY 90
Query: 331 QLKWIRGKIGLVSQEPVLFTSSIKDNINYGK---DGXXXXXXXXXXXXXXXXKFIDSLPQ 387
+ +R IG VS S+ + G+ D I +
Sbjct: 91 SAETVRQHIGFVSH-------SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAH 143
Query: 388 GLDTMVG------EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431
L +VG ++ LS G+KQR+ IARA+ P++L+LDE + LD
Sbjct: 144 QLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 393 VGEHGTQLSGGQKQRIAIARAILKDPR---ILLLDEATSALD-AESERVVQEALDKIMIN 448
+G+ T+LSGG+ QRI +A + + R + +LDE T+ L A+ ER+ ++ + +
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 449 RTTVIVAHRLSTVRNADLIAVIHQG 473
T + V H++ V +D + I G
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPG 808
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 17/101 (16%)
Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAILK-----DP--RILLLDEATSALDAESERVVQEA 441
LD +G QLSGG+ QR+ +A +L+ +P ++LLLD+ ++LD Q A
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSA 171
Query: 442 LDKIMINRTT-----VIVAHRLS-TVRNADLIAVIHQGKLV 476
LDKI+ + V+ +H L+ T+R+A ++ GK++
Sbjct: 172 LDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML 212
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 11/65 (16%)
Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAILK-----DP--RILLLDEATSALDAESERVVQEA 441
LD +G QLSGG+ QR+ +A +L+ +P ++LLLDE ++LD Q A
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSA 171
Query: 442 LDKIM 446
LDKI+
Sbjct: 172 LDKIL 176
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 11/65 (16%)
Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAILK-----DP--RILLLDEATSALDAESERVVQEA 441
LD +G QLSGG+ QR+ +A +L+ +P ++LLLDE ++LD Q A
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSA 171
Query: 442 LDKIM 446
LDKI+
Sbjct: 172 LDKIL 176
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 17/101 (16%)
Query: 389 LDTMVGEHGTQLSGGQKQRIAIARAILK-----DP--RILLLDEATSALDAESERVVQEA 441
LD +G QLSGG+ QR+ +A +L+ +P ++LLLD+ +LD Q A
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSA 171
Query: 442 LDKIMINRTT-----VIVAHRLS-TVRNADLIAVIHQGKLV 476
LDKI+ + V+ +H L+ T+R+A ++ GK++
Sbjct: 172 LDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML 212
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 388 GLDTM-VGEHGTQLSGGQKQRIAIARAILKDPR---ILLLDEATSALDAESERVVQEALD 443
GL M +G+ T LSGG+ QR+ +A + + + +LDE T+ L + + + L
Sbjct: 833 GLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLH 892
Query: 444 KIMINRTTVIV-AHRLSTVRNADLI 467
+++ N TV+V H L ++ AD I
Sbjct: 893 RLVDNGDTVLVIEHNLDVIKTADYI 917
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVIS 307
E S+ IP GT A+ G SGSGKST+++
Sbjct: 637 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 393 VGEHGTQLSGGQKQRIAIARAILKDPR---ILLLDEATSALDAESERVVQEALDKIMINR 449
+G+ T LSGG+ QR+ +A + + + +LDE T+ L + + + L +++ N
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 450 TTVIV-AHRLSTVRNADLI 467
TV+V H L ++ AD I
Sbjct: 899 DTVLVIEHNLDVIKTADYI 917
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI 309
E S+ IP GT A+ G SGSGKST+++ +
Sbjct: 637 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 393 VGEHGTQLSGGQKQRIAIARAILKDPR---ILLLDEATSALDAESERVVQEALDKIMINR 449
+G+ T LSGG+ QR+ +A + + + +LDE T+ L + + + L +++ N
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 596
Query: 450 TTVIV-AHRLSTVRNADLI 467
TV+V H L ++ AD I
Sbjct: 597 DTVLVIEHNLDVIKTADYI 615
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVIS 307
E S+ IP GT A+ G SGSGKST+++
Sbjct: 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVN 366
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 393 VGEHGTQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESERVVQEALDKIMINR 449
+G+ LSGG+ QR+ +A + K + +LDE T+ L + R + ++ ++
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKG 916
Query: 450 TTVIV-AHRLSTVRNADLI 467
TVIV H L ++ +D I
Sbjct: 917 NTVIVIEHNLDVIKTSDWI 935
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 400 LSGGQKQRIAIARAILKD--PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAH 456
LSGG+ QRI +A I + +LDE + L R + E L ++ + T ++V H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 457 RLSTVRNADLIAVI------HQGKLVE 477
T+ +AD I I H G++V
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVH 608
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI 309
E G +S P G ++ G SGSGKST+++ I
Sbjct: 655 EHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 313 YDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG 363
+DPQ E +I L KW G +G VS V++ I D +YG +G
Sbjct: 174 FDPQTDEFVIHSPTLTSS--KWWPGGLGKVSTHAVVYARLITDGKDYGVNG 222
>pdb|2OAP|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAP|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Amp-Pnp
pdb|2OAQ|1 Chain 1, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
pdb|2OAQ|2 Chain 2, Crystal Structure Of The Archaeal Secretion Atpase Gspe In
Complex With Phosphate
Length = 511
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-DGVNLKEFQLKWI 335
L+I +A +VG++ SGK+T ++ I F P A V I D +K + WI
Sbjct: 255 LAIEHKFSAIVVGETASGKTTTLNAIXXFIPPDAKVVSIEDTREIKLYHENWI 307
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 14/174 (8%)
Query: 288 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV 347
+G ++G +GSGK+T++ I P +G + I+G+ +++ IR I + P
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGM-----EVRKIRNYIRYSTNLPE 82
Query: 348 LFTSSIKDNINYGKDGXXXXXXXXXXXXXXXXKFIDSLPQGLDTMVGEHGTQLSGGQKQR 407
+ + N D + + +L G + ++ +LS GQ
Sbjct: 83 AYEIGVTVN-----DIVYLYEELKGLDRDLFLEMLKALKLG-EEILRRKLYKLSAGQSVL 136
Query: 408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTV 461
+ + A+ P I+ LDE +DA V+ + + + ++V H L +
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE--YGKEGILVTHELDML 188
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 400 LSGGQKQRIAIAR--AILKDPRI--LLLDEATSALDAESERVVQEALDKIMINRTTVIVA 455
LSGG++ AIA +ILK + +LDE +ALD + + L K + +++
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 456 HRLSTVRNADLI 467
HR T+ AD++
Sbjct: 389 HRKGTMEEADVL 400
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 386 PQG---LDTMVGEHGTQLSGGQKQRIAIARAILKDP-RILLLDEATSALDAESERVVQEA 441
P G +D + G G Q++ R+AIA A++ + ++LDE T LD + E
Sbjct: 272 PNGVLTIDNLSG--GEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEI 329
Query: 442 LDKIMINRTTVIVAHRLSTVRNADLI 467
K+ +I+ H AD+I
Sbjct: 330 FRKVKSIPQMIIITHHRELEDVADVI 355
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,126,358
Number of Sequences: 62578
Number of extensions: 454664
Number of successful extensions: 1806
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1511
Number of HSP's gapped (non-prelim): 186
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)