Query 048556
Match_columns 478
No_of_seqs 208 out of 2559
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 10:37:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 2E-103 4E-108 823.5 54.5 474 2-478 210-683 (716)
2 COG2274 SunT ABC-type bacterio 100.0 3.2E-96 7E-101 795.4 60.6 472 3-478 217-688 (709)
3 KOG0055 Multidrug/pheromone ex 100.0 3E-93 6.5E-98 783.6 58.4 477 2-478 729-1205(1228)
4 PRK11174 cysteine/glutathione 100.0 1.8E-89 4E-94 745.0 62.3 470 3-478 86-564 (588)
5 COG1132 MdlB ABC-type multidru 100.0 4.4E-88 9.4E-93 730.9 62.4 470 3-478 75-544 (567)
6 KOG0055 Multidrug/pheromone ex 100.0 2.3E-90 4.9E-95 760.9 44.2 476 2-478 93-568 (1228)
7 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 9.6E-88 2.1E-92 743.1 63.6 467 3-478 199-665 (686)
8 TIGR00958 3a01208 Conjugate Tr 100.0 1E-87 2.3E-92 743.7 62.7 471 3-478 224-694 (711)
9 TIGR03375 type_I_sec_LssB type 100.0 1.9E-87 4.1E-92 741.7 63.0 471 3-478 210-680 (694)
10 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.4E-87 5.1E-92 742.9 62.0 470 3-477 217-691 (710)
11 TIGR01193 bacteriocin_ABC ABC- 100.0 3.1E-87 6.7E-92 741.5 62.3 469 3-477 219-688 (708)
12 PRK11176 lipid transporter ATP 100.0 1.4E-86 3E-91 721.7 62.7 471 3-478 88-559 (582)
13 PRK11160 cysteine/glutathione 100.0 1.3E-86 2.8E-91 719.4 62.0 470 3-478 83-554 (574)
14 TIGR02868 CydC thiol reductant 100.0 7.4E-87 1.6E-91 716.0 58.8 452 3-458 76-529 (529)
15 COG4988 CydD ABC-type transpor 100.0 3.3E-86 7.1E-91 681.6 59.2 470 5-478 65-535 (559)
16 PTZ00265 multidrug resistance 100.0 4E-86 8.8E-91 770.5 62.7 471 2-476 888-1441(1466)
17 TIGR01846 type_I_sec_HlyB type 100.0 1.1E-84 2.4E-89 719.4 63.2 470 3-477 202-671 (694)
18 TIGR02203 MsbA_lipidA lipid A 100.0 1.3E-84 2.9E-89 704.8 62.6 470 3-477 77-547 (571)
19 TIGR02857 CydD thiol reductant 100.0 2E-84 4.4E-89 697.1 60.9 463 3-470 67-529 (529)
20 PRK10790 putative multidrug tr 100.0 4.7E-84 1E-88 703.0 63.0 465 4-477 89-554 (592)
21 PRK13657 cyclic beta-1,2-gluca 100.0 1.1E-83 2.4E-88 699.4 64.6 468 6-477 82-549 (588)
22 PRK10789 putative multidrug tr 100.0 1.3E-83 2.9E-88 695.5 62.9 469 4-477 60-529 (569)
23 COG4987 CydC ABC-type transpor 100.0 5.3E-84 1.1E-88 655.3 53.4 466 7-478 85-553 (573)
24 TIGR02204 MsbA_rel ABC transpo 100.0 3.3E-83 7.2E-88 694.6 62.7 474 3-477 81-554 (576)
25 TIGR01192 chvA glucan exporter 100.0 1.6E-82 3.4E-87 688.6 64.2 468 6-477 82-549 (585)
26 TIGR00957 MRP_assoc_pro multi 100.0 3E-81 6.5E-86 736.1 62.9 470 3-478 1028-1500(1522)
27 TIGR01842 type_I_sec_PrtD type 100.0 1.2E-80 2.7E-85 669.5 62.3 463 3-477 69-533 (544)
28 KOG0057 Mitochondrial Fe/S clu 100.0 5.1E-81 1.1E-85 633.9 51.2 469 3-478 97-566 (591)
29 KOG0056 Heavy metal exporter H 100.0 3.8E-83 8.3E-88 637.0 31.2 471 2-478 281-753 (790)
30 PLN03130 ABC transporter C fam 100.0 1.3E-79 2.9E-84 721.8 62.5 470 3-478 976-1453(1622)
31 PTZ00243 ABC transporter; Prov 100.0 1.6E-79 3.5E-84 720.1 62.6 470 6-478 1024-1525(1560)
32 PTZ00265 multidrug resistance 100.0 9.5E-79 2.1E-83 708.7 61.8 469 2-473 119-655 (1466)
33 PLN03232 ABC transporter C fam 100.0 6.1E-79 1.3E-83 715.6 60.3 469 3-478 973-1450(1495)
34 TIGR01194 cyc_pep_trnsptr cycl 100.0 4.8E-78 1E-82 650.1 57.4 462 3-477 76-550 (555)
35 COG5265 ATM1 ABC-type transpor 100.0 4E-78 8.7E-83 595.1 40.0 472 3-478 5-478 (497)
36 TIGR01271 CFTR_protein cystic 100.0 2.7E-76 5.9E-81 692.3 62.8 467 4-477 949-1431(1490)
37 KOG0054 Multidrug resistance-a 100.0 1.2E-76 2.5E-81 666.3 50.5 471 3-477 881-1353(1381)
38 COG4618 ArpD ABC-type protease 100.0 1.5E-75 3.3E-80 588.6 43.7 460 5-475 88-549 (580)
39 PLN03232 ABC transporter C fam 100.0 1E-72 2.2E-77 663.0 60.5 451 5-478 366-820 (1495)
40 PRK10522 multidrug transporter 100.0 2E-72 4.2E-77 606.0 57.6 454 3-477 71-529 (547)
41 PLN03130 ABC transporter C fam 100.0 2.8E-72 6E-77 660.0 61.8 453 5-478 366-820 (1622)
42 TIGR00954 3a01203 Peroxysomal 100.0 1E-66 2.2E-71 570.5 52.8 449 5-472 164-653 (659)
43 TIGR00957 MRP_assoc_pro multi 100.0 5.9E-66 1.3E-70 606.8 61.1 455 4-477 382-841 (1522)
44 KOG0054 Multidrug resistance-a 100.0 2.4E-66 5.2E-71 583.1 54.9 456 4-478 266-723 (1381)
45 TIGR01271 CFTR_protein cystic 100.0 2.2E-63 4.8E-68 583.4 61.1 449 4-477 146-627 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 3.7E-61 7.9E-66 565.2 58.9 456 4-477 309-861 (1560)
47 COG1126 GlnQ ABC-type polar am 100.0 9.4E-54 2E-58 390.9 20.4 208 261-478 3-217 (240)
48 cd03289 ABCC_CFTR2 The CFTR su 100.0 5.9E-53 1.3E-57 415.0 25.9 216 259-477 1-216 (275)
49 COG1135 AbcC ABC-type metal io 100.0 1.3E-52 2.7E-57 401.9 20.0 211 261-478 2-223 (339)
50 COG1125 OpuBA ABC-type proline 100.0 2E-51 4.2E-56 382.9 18.6 207 261-477 2-216 (309)
51 PRK14257 phosphate ABC transpo 100.0 1.8E-50 3.9E-55 407.2 25.7 217 258-477 78-304 (329)
52 cd03252 ABCC_Hemolysin The ABC 100.0 6.5E-50 1.4E-54 386.6 26.0 216 261-477 1-216 (237)
53 COG1117 PstB ABC-type phosphat 100.0 8E-51 1.7E-55 370.1 18.1 209 259-477 6-228 (253)
54 cd03244 ABCC_MRP_domain2 Domai 100.0 1.2E-49 2.7E-54 380.5 26.7 216 260-477 2-217 (221)
55 cd03254 ABCC_Glucan_exporter_l 100.0 1.5E-49 3.2E-54 382.0 26.2 216 260-477 2-217 (229)
56 cd03245 ABCC_bacteriocin_expor 100.0 3E-49 6.4E-54 377.6 26.9 217 260-477 2-218 (220)
57 cd03251 ABCC_MsbA MsbA is an e 100.0 3.2E-49 6.8E-54 381.0 25.6 216 261-477 1-216 (234)
58 COG1136 SalX ABC-type antimicr 100.0 1.8E-49 4E-54 372.5 23.1 209 261-476 2-221 (226)
59 cd03248 ABCC_TAP TAP, the Tran 100.0 3.1E-49 6.7E-54 379.1 25.2 219 257-475 8-226 (226)
60 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 4.5E-49 9.8E-54 380.9 25.7 217 261-477 1-217 (238)
61 cd03253 ABCC_ATM1_transporter 100.0 8.4E-49 1.8E-53 378.5 25.7 215 261-477 1-215 (236)
62 cd03288 ABCC_SUR2 The SUR doma 100.0 1.4E-48 3E-53 381.8 27.5 220 256-477 15-234 (257)
63 COG1116 TauB ABC-type nitrate/ 100.0 4.1E-49 8.9E-54 370.6 21.3 201 260-475 3-211 (248)
64 COG1120 FepC ABC-type cobalami 100.0 3.2E-49 7E-54 377.9 20.0 204 260-477 2-219 (258)
65 COG2884 FtsE Predicted ATPase 100.0 3.3E-49 7.1E-54 353.4 17.7 204 261-477 2-217 (223)
66 COG4615 PvdE ABC-type sideroph 100.0 6.1E-46 1.3E-50 363.6 40.0 452 4-478 72-529 (546)
67 TIGR02314 ABC_MetN D-methionin 100.0 3.8E-48 8.2E-53 391.3 23.1 210 261-477 2-221 (343)
68 COG3839 MalK ABC-type sugar tr 100.0 4.6E-48 1E-52 383.4 21.8 202 260-477 3-214 (338)
69 COG3840 ThiQ ABC-type thiamine 100.0 5.4E-48 1.2E-52 343.0 19.0 199 261-477 2-210 (231)
70 TIGR00960 3a0501s02 Type II (G 100.0 6.6E-48 1.4E-52 367.4 20.5 207 261-475 2-216 (216)
71 COG4178 ABC-type uncharacteriz 100.0 1.8E-44 3.8E-49 378.3 48.0 450 3-472 109-588 (604)
72 cd03260 ABC_PstB_phosphate_tra 100.0 1.4E-47 3E-52 367.9 22.0 203 261-477 1-220 (227)
73 COG1124 DppF ABC-type dipeptid 100.0 1.4E-47 3.1E-52 357.0 20.8 209 260-478 3-223 (252)
74 cd03261 ABC_Org_Solvent_Resist 100.0 3.7E-47 8E-52 366.9 24.3 207 261-477 1-217 (235)
75 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.8E-47 4E-52 364.8 20.7 208 261-475 1-218 (218)
76 COG1127 Ttg2A ABC-type transpo 100.0 2.4E-47 5.2E-52 353.9 20.0 208 260-477 8-226 (263)
77 PRK13631 cbiO cobalt transport 100.0 7.1E-47 1.5E-51 379.9 25.1 211 260-477 21-256 (320)
78 cd03259 ABC_Carb_Solutes_like 100.0 3.2E-47 7E-52 361.8 21.1 205 261-477 1-211 (213)
79 cd03250 ABCC_MRP_domain1 Domai 100.0 8.9E-47 1.9E-51 356.5 23.9 200 261-474 1-204 (204)
80 cd03219 ABC_Mj1267_LivG_branch 100.0 5.1E-47 1.1E-51 366.1 22.5 212 261-477 1-223 (236)
81 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.6E-47 1.2E-51 360.7 22.3 199 260-475 4-217 (254)
82 TIGR02211 LolD_lipo_ex lipopro 100.0 6.6E-47 1.4E-51 361.7 22.4 209 261-476 2-220 (221)
83 cd03226 ABC_cobalt_CbiO_domain 100.0 3.5E-47 7.6E-52 359.5 20.2 199 262-476 1-205 (205)
84 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.5E-46 5.4E-51 354.3 25.7 199 259-477 5-203 (207)
85 COG1122 CbiO ABC-type cobalt t 100.0 7.4E-47 1.6E-51 361.1 21.7 209 260-477 3-219 (235)
86 PRK11629 lolD lipoprotein tran 100.0 1.8E-46 3.9E-51 361.7 23.7 211 260-477 5-225 (233)
87 cd03266 ABC_NatA_sodium_export 100.0 1.2E-46 2.6E-51 359.1 22.0 209 261-477 2-216 (218)
88 PRK14269 phosphate ABC transpo 100.0 1.2E-46 2.6E-51 365.9 22.3 208 260-477 2-221 (246)
89 COG3842 PotA ABC-type spermidi 100.0 2.8E-47 6E-52 379.8 18.1 202 260-477 5-217 (352)
90 COG3638 ABC-type phosphate/pho 100.0 4.1E-47 8.9E-52 351.5 17.8 208 260-477 3-228 (258)
91 PRK13650 cbiO cobalt transport 100.0 2.1E-46 4.6E-51 370.6 23.8 211 260-477 4-220 (279)
92 cd03224 ABC_TM1139_LivF_branch 100.0 1.5E-46 3.3E-51 359.4 21.9 208 261-477 1-212 (222)
93 TIGR02673 FtsE cell division A 100.0 1.1E-46 2.4E-51 358.3 20.8 201 261-474 2-214 (214)
94 cd03256 ABC_PhnC_transporter A 100.0 1.9E-46 4.2E-51 363.1 22.7 213 261-477 1-225 (241)
95 cd03264 ABC_drug_resistance_li 100.0 1.9E-46 4.2E-51 356.0 21.6 201 261-477 1-209 (211)
96 cd03225 ABC_cobalt_CbiO_domain 100.0 1.5E-46 3.3E-51 356.6 20.9 205 262-474 1-211 (211)
97 TIGR02315 ABC_phnC phosphonate 100.0 3.1E-46 6.8E-51 362.1 23.3 213 261-477 2-226 (243)
98 PRK11153 metN DL-methionine tr 100.0 2.4E-46 5.2E-51 380.0 23.2 210 261-477 2-221 (343)
99 cd03263 ABC_subfamily_A The AB 100.0 2.2E-46 4.8E-51 357.8 21.5 208 261-477 1-212 (220)
100 cd03290 ABCC_SUR1_N The SUR do 100.0 6.4E-46 1.4E-50 354.3 24.1 210 262-474 2-218 (218)
101 cd03268 ABC_BcrA_bacitracin_re 100.0 2.9E-46 6.3E-51 354.0 21.6 201 261-477 1-206 (208)
102 cd03258 ABC_MetN_methionine_tr 100.0 2.9E-46 6.2E-51 360.2 21.8 210 261-477 2-221 (233)
103 PRK13637 cbiO cobalt transport 100.0 5.1E-46 1.1E-50 369.2 24.1 210 261-477 3-225 (287)
104 PRK14250 phosphate ABC transpo 100.0 5.4E-46 1.2E-50 360.2 23.8 206 260-477 3-212 (241)
105 cd03296 ABC_CysA_sulfate_impor 100.0 3.1E-46 6.6E-51 361.4 21.9 205 261-477 3-217 (239)
106 PRK13647 cbiO cobalt transport 100.0 4.6E-46 1E-50 367.2 23.4 209 260-477 4-218 (274)
107 cd03257 ABC_NikE_OppD_transpor 100.0 4.9E-46 1.1E-50 357.2 22.6 211 261-477 2-226 (228)
108 PRK11650 ugpC glycerol-3-phosp 100.0 4.5E-46 9.8E-51 378.9 23.6 207 260-477 3-215 (356)
109 cd03293 ABC_NrtD_SsuB_transpor 100.0 2.7E-46 5.7E-51 357.4 20.6 205 261-477 1-214 (220)
110 PRK10908 cell division protein 100.0 1E-45 2.2E-50 353.9 24.6 208 261-477 2-217 (222)
111 PRK14242 phosphate transporter 100.0 4.6E-46 1E-50 363.2 22.4 208 260-477 6-228 (253)
112 TIGR00972 3a0107s01c2 phosphat 100.0 8.2E-46 1.8E-50 360.2 24.1 207 261-477 2-223 (247)
113 cd03218 ABC_YhbG The ABC trans 100.0 4.7E-46 1E-50 358.4 22.1 207 261-477 1-213 (232)
114 PRK13643 cbiO cobalt transport 100.0 5.8E-46 1.3E-50 368.9 23.5 210 261-477 2-224 (288)
115 cd03247 ABCC_cytochrome_bd The 100.0 4.9E-46 1.1E-50 344.0 21.3 176 261-477 1-176 (178)
116 cd03292 ABC_FtsE_transporter F 100.0 4.1E-46 8.9E-51 354.4 21.3 206 261-475 1-214 (214)
117 PRK11432 fbpC ferric transport 100.0 6.1E-46 1.3E-50 376.9 23.3 206 260-477 6-217 (351)
118 PRK10744 pstB phosphate transp 100.0 9.6E-46 2.1E-50 362.4 23.6 209 259-477 12-235 (260)
119 PRK10584 putative ABC transpor 100.0 1.1E-45 2.3E-50 355.0 23.5 212 260-478 6-227 (228)
120 cd03262 ABC_HisP_GlnQ_permease 100.0 4.4E-46 9.6E-51 353.9 20.6 205 261-475 1-213 (213)
121 cd03295 ABC_OpuCA_Osmoprotecti 100.0 5.9E-46 1.3E-50 360.1 21.7 208 261-477 1-216 (242)
122 cd03301 ABC_MalK_N The N-termi 100.0 6.9E-46 1.5E-50 352.7 21.5 205 261-477 1-211 (213)
123 PRK14273 phosphate ABC transpo 100.0 1.1E-45 2.4E-50 360.8 23.4 208 260-477 7-229 (254)
124 PRK13646 cbiO cobalt transport 100.0 9E-46 1.9E-50 367.3 23.1 210 261-477 3-226 (286)
125 PRK13635 cbiO cobalt transport 100.0 9.4E-46 2E-50 365.8 23.1 210 260-477 5-220 (279)
126 TIGR03265 PhnT2 putative 2-ami 100.0 6.9E-46 1.5E-50 377.1 22.5 206 260-477 4-215 (353)
127 cd03246 ABCC_Protease_Secretio 100.0 8.8E-46 1.9E-50 340.8 21.1 172 261-475 1-173 (173)
128 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.1E-45 2.4E-50 356.9 22.6 206 261-477 2-212 (236)
129 PRK13634 cbiO cobalt transport 100.0 1.1E-45 2.4E-50 367.3 23.0 210 261-477 3-226 (290)
130 PRK13537 nodulation ABC transp 100.0 9.5E-46 2E-50 370.1 22.4 207 260-477 7-218 (306)
131 cd03269 ABC_putative_ATPase Th 100.0 7.2E-46 1.6E-50 351.8 20.0 203 261-477 1-208 (210)
132 PRK14235 phosphate transporter 100.0 1.4E-45 3.1E-50 362.5 22.6 209 259-477 18-242 (267)
133 cd03265 ABC_DrrA DrrA is the A 100.0 1.2E-45 2.6E-50 352.8 21.4 206 261-477 1-212 (220)
134 TIGR03411 urea_trans_UrtD urea 100.0 2.4E-45 5.1E-50 355.8 23.7 212 261-477 3-222 (242)
135 PRK10851 sulfate/thiosulfate t 100.0 1.8E-45 4E-50 374.0 23.4 205 261-477 3-217 (353)
136 PRK14247 phosphate ABC transpo 100.0 2.1E-45 4.6E-50 357.9 22.8 208 260-477 3-225 (250)
137 TIGR03410 urea_trans_UrtE urea 100.0 1.9E-45 4E-50 353.8 22.0 207 261-477 1-212 (230)
138 PRK11247 ssuB aliphatic sulfon 100.0 2.8E-45 6.1E-50 357.9 23.5 199 260-477 12-214 (257)
139 PRK11614 livF leucine/isoleuci 100.0 2.4E-45 5.1E-50 354.8 22.6 209 260-477 5-217 (237)
140 PRK14267 phosphate ABC transpo 100.0 1.5E-45 3.2E-50 359.6 21.3 208 260-477 4-228 (253)
141 PRK13636 cbiO cobalt transport 100.0 2.4E-45 5.2E-50 363.8 23.0 209 260-477 5-222 (283)
142 PRK13632 cbiO cobalt transport 100.0 2.6E-45 5.6E-50 361.4 23.1 210 260-477 7-222 (271)
143 PRK09493 glnQ glutamine ABC tr 100.0 2.1E-45 4.5E-50 355.8 22.0 207 261-477 2-216 (240)
144 PRK13642 cbiO cobalt transport 100.0 4.2E-45 9E-50 361.0 24.5 211 260-477 4-220 (277)
145 cd03235 ABC_Metallic_Cations A 100.0 1E-45 2.2E-50 351.6 19.3 199 262-475 1-210 (213)
146 TIGR01186 proV glycine betaine 100.0 1.1E-45 2.5E-50 375.3 20.8 195 276-477 6-210 (363)
147 cd03298 ABC_ThiQ_thiamine_tran 100.0 4E-45 8.7E-50 347.0 23.1 199 261-477 1-209 (211)
148 PRK14259 phosphate ABC transpo 100.0 5.4E-45 1.2E-49 358.7 24.7 204 259-472 12-228 (269)
149 TIGR03258 PhnT 2-aminoethylpho 100.0 2.3E-45 5E-50 373.9 22.7 207 259-477 4-219 (362)
150 PRK13651 cobalt transporter AT 100.0 3E-45 6.5E-50 366.0 23.1 210 261-477 3-245 (305)
151 PRK09536 btuD corrinoid ABC tr 100.0 2.5E-45 5.3E-50 377.3 23.0 204 260-477 3-219 (402)
152 PRK13649 cbiO cobalt transport 100.0 7.1E-45 1.5E-49 360.1 25.2 210 261-477 3-225 (280)
153 PRK09452 potA putrescine/sperm 100.0 3.6E-45 7.7E-50 373.9 23.7 206 260-477 14-225 (375)
154 PRK10575 iron-hydroxamate tran 100.0 3E-45 6.5E-50 359.9 22.3 204 260-477 11-228 (265)
155 PRK11831 putative ABC transpor 100.0 2.5E-45 5.3E-50 361.2 21.6 208 260-477 7-224 (269)
156 PRK11264 putative amino-acid A 100.0 2.8E-45 6E-50 357.0 21.7 207 261-477 4-224 (250)
157 PRK10895 lipopolysaccharide AB 100.0 4.1E-45 9E-50 353.9 22.7 207 261-477 4-217 (241)
158 PRK13644 cbiO cobalt transport 100.0 4.7E-45 1E-49 360.0 23.4 208 261-477 2-215 (274)
159 PRK13648 cbiO cobalt transport 100.0 6.4E-45 1.4E-49 358.3 24.1 210 260-477 7-222 (269)
160 PRK11000 maltose/maltodextrin 100.0 3.8E-45 8.3E-50 374.2 23.1 206 260-477 3-214 (369)
161 PRK11300 livG leucine/isoleuci 100.0 6.2E-45 1.3E-49 355.6 23.5 213 260-477 5-234 (255)
162 TIGR01288 nodI ATP-binding ABC 100.0 3.8E-45 8.1E-50 365.8 22.3 207 260-477 4-215 (303)
163 TIGR03005 ectoine_ehuA ectoine 100.0 3.6E-45 7.7E-50 356.7 21.6 207 261-477 1-227 (252)
164 cd03291 ABCC_CFTR1 The CFTR su 100.0 2.5E-44 5.5E-49 355.0 27.9 222 233-477 16-238 (282)
165 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.9E-45 4.2E-50 361.9 19.8 206 262-477 26-241 (269)
166 PRK11231 fecE iron-dicitrate t 100.0 4.9E-45 1.1E-49 356.4 22.5 207 261-477 3-218 (255)
167 PRK11124 artP arginine transpo 100.0 3.9E-45 8.4E-50 354.4 21.6 207 261-477 3-221 (242)
168 PRK13645 cbiO cobalt transport 100.0 5.5E-45 1.2E-49 362.3 23.2 212 259-477 5-231 (289)
169 PRK14248 phosphate ABC transpo 100.0 5.3E-45 1.1E-49 358.7 22.7 208 260-477 21-243 (268)
170 PRK14240 phosphate transporter 100.0 7.6E-45 1.7E-49 354.0 23.6 208 260-477 3-225 (250)
171 PRK14237 phosphate transporter 100.0 6.1E-45 1.3E-49 358.0 23.0 209 259-477 19-242 (267)
172 cd03234 ABCG_White The White s 100.0 4.2E-45 9.1E-50 350.5 21.2 213 261-478 4-225 (226)
173 PRK14274 phosphate ABC transpo 100.0 6.5E-45 1.4E-49 356.4 23.0 208 260-477 12-234 (259)
174 COG1131 CcmA ABC-type multidru 100.0 3.4E-45 7.3E-50 363.2 21.1 204 260-477 4-217 (293)
175 PRK13652 cbiO cobalt transport 100.0 1.2E-44 2.5E-49 357.8 24.7 208 261-477 4-218 (277)
176 PRK14268 phosphate ABC transpo 100.0 6.2E-45 1.3E-49 356.3 22.6 208 260-477 12-233 (258)
177 PRK13640 cbiO cobalt transport 100.0 7.9E-45 1.7E-49 359.8 23.6 210 260-477 5-223 (282)
178 PRK14239 phosphate transporter 100.0 6E-45 1.3E-49 355.1 22.3 208 260-477 5-227 (252)
179 PRK14236 phosphate transporter 100.0 8E-45 1.7E-49 358.1 23.2 209 259-477 24-247 (272)
180 PRK10619 histidine/lysine/argi 100.0 6.3E-45 1.4E-49 356.1 22.2 209 259-477 4-232 (257)
181 PRK13633 cobalt transporter AT 100.0 6.5E-45 1.4E-49 360.2 22.6 211 260-477 4-224 (280)
182 PRK10247 putative ABC transpor 100.0 5.4E-45 1.2E-49 349.6 21.3 204 260-475 7-217 (225)
183 PRK14251 phosphate ABC transpo 100.0 4.2E-45 9.2E-50 356.0 20.8 208 260-477 4-226 (251)
184 PRK15079 oligopeptide ABC tran 100.0 1.5E-44 3.1E-49 364.6 25.4 211 260-477 8-242 (331)
185 TIGR02769 nickel_nikE nickel i 100.0 6.1E-45 1.3E-49 357.7 21.8 210 261-477 3-231 (265)
186 TIGR03522 GldA_ABC_ATP gliding 100.0 6E-45 1.3E-49 363.9 22.0 206 261-477 3-212 (301)
187 PRK13536 nodulation factor exp 100.0 6.8E-45 1.5E-49 368.0 22.6 207 260-477 41-252 (340)
188 PRK14249 phosphate ABC transpo 100.0 1.4E-44 3.1E-49 352.3 23.9 208 260-477 4-226 (251)
189 PRK13641 cbiO cobalt transport 100.0 1.1E-44 2.4E-49 359.7 23.5 210 261-477 3-225 (287)
190 COG1118 CysA ABC-type sulfate/ 100.0 2.3E-45 5.1E-50 351.0 17.6 206 260-477 2-218 (345)
191 PRK14245 phosphate ABC transpo 100.0 5.3E-45 1.2E-49 355.1 20.5 210 260-477 3-225 (250)
192 PRK14253 phosphate ABC transpo 100.0 1.3E-44 2.8E-49 352.2 23.0 208 260-477 3-224 (249)
193 PRK14244 phosphate ABC transpo 100.0 4.7E-45 1E-49 355.7 19.6 207 261-477 6-228 (251)
194 PRK10253 iron-enterobactin tra 100.0 1.4E-44 3E-49 355.1 23.1 208 260-477 7-224 (265)
195 PRK14261 phosphate ABC transpo 100.0 1.2E-44 2.6E-49 353.2 22.1 208 260-477 6-228 (253)
196 TIGR02982 heterocyst_DevA ABC 100.0 1E-44 2.2E-49 346.4 21.2 208 261-475 2-219 (220)
197 PRK13548 hmuV hemin importer A 100.0 2.3E-44 5E-49 352.2 24.1 207 261-477 3-221 (258)
198 COG4555 NatA ABC-type Na+ tran 100.0 1.6E-45 3.6E-50 332.3 14.7 207 261-477 2-213 (245)
199 PRK14238 phosphate transporter 100.0 2.4E-44 5.2E-49 354.5 24.4 211 260-477 24-246 (271)
200 PRK13638 cbiO cobalt transport 100.0 1.6E-44 3.5E-49 355.8 23.0 207 261-477 2-216 (271)
201 TIGR01277 thiQ thiamine ABC tr 100.0 1.7E-44 3.7E-49 343.2 22.4 199 261-477 1-209 (213)
202 TIGR03873 F420-0_ABC_ATP propo 100.0 1.3E-44 2.8E-49 353.6 22.1 212 261-477 2-217 (256)
203 PRK11248 tauB taurine transpor 100.0 1.5E-44 3.3E-49 352.7 22.4 202 261-477 2-211 (255)
204 PRK14270 phosphate ABC transpo 100.0 1.4E-44 2.9E-49 352.5 22.0 208 260-477 4-226 (251)
205 PRK14256 phosphate ABC transpo 100.0 1.6E-44 3.4E-49 352.2 22.4 209 259-477 3-227 (252)
206 PRK14262 phosphate ABC transpo 100.0 1.2E-44 2.5E-49 352.7 21.4 208 260-477 3-225 (250)
207 PRK11607 potG putrescine trans 100.0 1.4E-44 3.1E-49 370.0 22.9 206 260-477 19-230 (377)
208 PRK14271 phosphate ABC transpo 100.0 3.1E-44 6.6E-49 354.5 24.2 210 260-477 21-242 (276)
209 cd03228 ABCC_MRP_Like The MRP 100.0 2.1E-44 4.5E-49 331.0 21.2 171 261-474 1-171 (171)
210 PRK14243 phosphate transporter 100.0 2.9E-44 6.4E-49 352.6 23.6 208 260-477 10-239 (264)
211 PRK13639 cbiO cobalt transport 100.0 2.6E-44 5.6E-49 355.0 22.8 208 261-477 2-217 (275)
212 cd03229 ABC_Class3 This class 100.0 1.9E-44 4.1E-49 333.5 20.4 172 261-474 1-178 (178)
213 TIGR01978 sufC FeS assembly AT 100.0 2.2E-44 4.7E-49 349.2 21.6 207 261-477 1-225 (243)
214 cd03230 ABC_DR_subfamily_A Thi 100.0 2.2E-44 4.9E-49 331.4 20.6 170 261-475 1-173 (173)
215 PRK11308 dppF dipeptide transp 100.0 2.7E-44 5.8E-49 362.3 22.7 211 260-477 5-235 (327)
216 PRK10070 glycine betaine trans 100.0 2.8E-44 6.1E-49 369.2 23.1 194 277-477 42-245 (400)
217 PRK14241 phosphate transporter 100.0 2.8E-44 6E-49 351.7 21.8 208 260-477 4-233 (258)
218 PRK14255 phosphate ABC transpo 100.0 2.9E-44 6.2E-49 350.3 21.7 208 260-477 5-227 (252)
219 PRK14254 phosphate ABC transpo 100.0 5.4E-44 1.2E-48 354.2 23.9 209 259-477 38-260 (285)
220 PRK14272 phosphate ABC transpo 100.0 4.3E-44 9.3E-49 349.1 22.7 209 261-477 5-227 (252)
221 PRK13547 hmuV hemin importer A 100.0 4.3E-44 9.2E-49 352.4 22.8 212 261-477 2-235 (272)
222 PRK10771 thiQ thiamine transpo 100.0 6.4E-44 1.4E-48 343.7 23.5 199 261-477 2-210 (232)
223 PRK14260 phosphate ABC transpo 100.0 2.9E-44 6.2E-49 351.8 21.3 208 260-477 7-234 (259)
224 TIGR00968 3a0106s01 sulfate AB 100.0 3.3E-44 7.1E-49 346.8 21.4 205 261-477 1-211 (237)
225 PRK14252 phosphate ABC transpo 100.0 4.8E-44 1E-48 351.4 22.9 210 258-477 14-240 (265)
226 cd03300 ABC_PotA_N PotA is an 100.0 4.4E-44 9.5E-49 344.9 22.1 205 261-477 1-211 (232)
227 cd03297 ABC_ModC_molybdenum_tr 100.0 5.8E-44 1.3E-48 339.8 22.1 203 262-478 3-213 (214)
228 PRK14266 phosphate ABC transpo 100.0 6.5E-44 1.4E-48 347.4 22.9 207 261-477 4-225 (250)
229 PRK11022 dppD dipeptide transp 100.0 3.8E-44 8.2E-49 361.2 21.7 209 261-477 4-234 (326)
230 cd03233 ABC_PDR_domain1 The pl 100.0 6.8E-44 1.5E-48 336.3 21.8 189 260-477 3-200 (202)
231 PRK14275 phosphate ABC transpo 100.0 4.5E-44 9.9E-49 355.0 21.6 208 260-477 39-261 (286)
232 COG0410 LivF ABC-type branched 100.0 7E-44 1.5E-48 330.1 21.3 209 261-477 4-217 (237)
233 TIGR01188 drrA daunorubicin re 100.0 3.7E-44 7.9E-49 358.5 20.6 194 276-477 6-204 (302)
234 PRK11701 phnK phosphonate C-P 100.0 8.2E-44 1.8E-48 348.4 22.2 208 260-477 6-232 (258)
235 PRK09473 oppD oligopeptide tra 100.0 5.5E-44 1.2E-48 360.4 21.6 212 260-477 12-242 (330)
236 PRK14265 phosphate ABC transpo 100.0 1.6E-43 3.5E-48 349.1 24.3 208 260-477 20-249 (274)
237 PRK09984 phosphonate/organopho 100.0 9.6E-44 2.1E-48 348.7 22.5 213 260-477 4-233 (262)
238 PRK14258 phosphate ABC transpo 100.0 1E-43 2.2E-48 348.3 22.1 208 260-477 7-236 (261)
239 TIGR03608 L_ocin_972_ABC putat 100.0 6.3E-44 1.4E-48 337.4 19.0 198 263-470 1-206 (206)
240 PRK11144 modC molybdate transp 100.0 1.2E-43 2.6E-48 361.5 22.5 200 261-477 2-209 (352)
241 PRK15112 antimicrobial peptide 100.0 2.6E-43 5.7E-48 346.4 24.1 211 260-477 4-230 (267)
242 cd03299 ABC_ModC_like Archeal 100.0 1.4E-43 3.1E-48 341.9 21.8 204 261-477 1-210 (235)
243 PRK14263 phosphate ABC transpo 100.0 1.7E-43 3.6E-48 346.6 22.4 208 260-477 8-236 (261)
244 PRK14264 phosphate ABC transpo 100.0 1.8E-43 4E-48 353.7 23.1 209 259-477 44-280 (305)
245 TIGR03415 ABC_choXWV_ATP choli 100.0 1.6E-43 3.4E-48 361.3 22.2 195 276-477 37-245 (382)
246 PRK15093 antimicrobial peptide 100.0 1.9E-43 4.1E-48 357.1 22.5 210 261-477 4-239 (330)
247 cd03215 ABC_Carb_Monos_II This 100.0 1.5E-43 3.2E-48 328.6 19.9 172 260-475 4-182 (182)
248 TIGR03740 galliderm_ABC gallid 100.0 2E-43 4.4E-48 338.2 21.3 199 261-477 1-204 (223)
249 PRK10419 nikE nickel transport 100.0 2.3E-43 5.1E-48 346.9 22.3 213 261-477 4-232 (268)
250 cd03223 ABCD_peroxisomal_ALDP 100.0 2.6E-43 5.6E-48 322.2 20.9 164 261-474 1-164 (166)
251 TIGR02142 modC_ABC molybdenum 100.0 2.4E-43 5.3E-48 359.6 23.0 201 265-477 4-212 (354)
252 cd03213 ABCG_EPDR ABCG transpo 100.0 2.3E-43 5.1E-48 330.6 20.6 181 260-477 3-192 (194)
253 cd03232 ABC_PDR_domain2 The pl 100.0 2.9E-43 6.3E-48 329.5 19.9 180 260-477 3-190 (192)
254 PRK14246 phosphate ABC transpo 100.0 5.6E-43 1.2E-47 342.1 22.7 208 260-477 10-232 (257)
255 cd03217 ABC_FeS_Assembly ABC-t 100.0 6.5E-43 1.4E-47 329.2 21.7 178 261-477 1-185 (200)
256 cd03231 ABC_CcmA_heme_exporter 100.0 8.9E-43 1.9E-47 328.5 22.0 195 261-470 1-198 (201)
257 cd03214 ABC_Iron-Siderophores_ 100.0 3.6E-43 7.8E-48 325.5 18.8 175 262-477 1-178 (180)
258 CHL00131 ycf16 sulfate ABC tra 100.0 1.2E-42 2.6E-47 338.9 23.1 211 260-477 7-232 (252)
259 TIGR02323 CP_lyasePhnK phospho 100.0 9.9E-43 2.2E-47 339.7 21.6 208 260-477 3-229 (253)
260 cd03216 ABC_Carb_Monos_I This 100.0 1.7E-42 3.6E-47 315.9 21.4 159 261-477 1-162 (163)
261 COG4181 Predicted ABC-type tra 100.0 4.7E-43 1E-47 308.5 17.1 213 260-477 6-226 (228)
262 PRK10418 nikD nickel transport 100.0 1.2E-42 2.6E-47 339.3 21.7 201 260-477 4-221 (254)
263 cd03267 ABC_NatA_like Similar 100.0 7.5E-43 1.6E-47 337.1 20.0 194 276-477 34-234 (236)
264 PRK13549 xylose transporter AT 100.0 1.4E-42 3E-47 370.8 23.7 208 260-477 5-223 (506)
265 PRK13540 cytochrome c biogenes 100.0 1.2E-42 2.6E-47 327.4 20.3 195 261-469 2-198 (200)
266 PRK09580 sufC cysteine desulfu 100.0 1.8E-42 3.9E-47 336.8 22.1 211 261-477 2-226 (248)
267 PRK11288 araG L-arabinose tran 100.0 2.1E-42 4.6E-47 369.0 23.7 208 260-477 4-220 (501)
268 COG4619 ABC-type uncharacteriz 100.0 3.5E-43 7.7E-48 308.3 14.1 194 275-475 15-212 (223)
269 PRK13538 cytochrome c biogenes 100.0 2.6E-42 5.7E-47 326.0 21.0 195 261-470 2-202 (204)
270 PRK10762 D-ribose transporter 100.0 3.2E-42 6.9E-47 367.6 23.8 207 261-477 5-221 (501)
271 PRK15056 manganese/iron transp 100.0 3.4E-42 7.5E-47 339.4 21.9 205 260-477 6-221 (272)
272 TIGR01184 ntrCD nitrate transp 100.0 4.4E-42 9.6E-47 330.5 21.9 187 279-477 1-195 (230)
273 PRK15439 autoinducer 2 ABC tra 100.0 6.4E-42 1.4E-46 365.8 25.5 206 260-477 11-220 (510)
274 PRK09700 D-allose transporter 100.0 4.9E-42 1.1E-46 367.0 24.5 208 260-477 5-225 (510)
275 COG1137 YhbG ABC-type (unclass 100.0 3.5E-43 7.6E-48 316.9 12.8 212 260-477 4-219 (243)
276 PRK03695 vitamin B12-transport 100.0 5.5E-42 1.2E-46 333.5 22.3 201 262-477 2-213 (248)
277 COG1123 ATPase components of v 100.0 3.3E-42 7.1E-47 357.1 21.1 215 260-478 280-511 (539)
278 PRK10982 galactose/methyl gala 100.0 5.4E-42 1.2E-46 365.1 22.6 205 263-477 1-214 (491)
279 PRK13543 cytochrome c biogenes 100.0 1.1E-41 2.4E-46 324.1 22.2 196 260-472 11-212 (214)
280 COG0411 LivG ABC-type branched 100.0 4.1E-42 8.9E-47 320.7 17.6 210 261-477 5-230 (250)
281 TIGR01189 ccmA heme ABC export 100.0 8.5E-42 1.9E-46 321.0 19.5 192 261-468 1-196 (198)
282 PRK13539 cytochrome c biogenes 100.0 1.5E-41 3.2E-46 321.7 20.9 194 261-472 3-200 (207)
283 PRK09544 znuC high-affinity zi 100.0 2.1E-41 4.6E-46 329.7 22.3 191 260-477 4-200 (251)
284 TIGR02633 xylG D-xylose ABC tr 100.0 2.1E-41 4.4E-46 361.5 24.1 207 261-477 2-221 (500)
285 TIGR02324 CP_lyasePhnL phospho 100.0 1.5E-41 3.2E-46 325.4 20.6 203 261-470 2-222 (224)
286 PRK10261 glutathione transport 100.0 1.5E-41 3.3E-46 370.3 22.8 211 260-477 313-544 (623)
287 TIGR02770 nickel_nikD nickel i 100.0 1.4E-41 3.1E-46 327.0 19.7 191 278-477 1-206 (230)
288 COG1129 MglA ABC-type sugar tr 100.0 3.3E-41 7.2E-46 347.4 22.7 208 260-477 8-225 (500)
289 COG4175 ProV ABC-type proline/ 100.0 1.3E-41 2.8E-46 325.7 18.2 207 260-477 4-245 (386)
290 TIGR01166 cbiO cobalt transpor 100.0 2.6E-41 5.6E-46 315.7 17.9 178 276-460 5-189 (190)
291 PRK10938 putative molybdenum t 100.0 6.1E-41 1.3E-45 357.0 22.9 201 261-477 4-215 (490)
292 PRK13549 xylose transporter AT 100.0 6.2E-41 1.3E-45 358.1 22.3 216 260-477 259-485 (506)
293 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 7.4E-41 1.6E-45 320.7 19.7 195 261-477 23-222 (224)
294 PRK15134 microcin C ABC transp 100.0 4.5E-41 9.6E-46 361.1 20.3 210 260-477 275-506 (529)
295 PRK15134 microcin C ABC transp 100.0 8.5E-41 1.8E-45 358.9 21.9 211 260-477 5-237 (529)
296 COG0444 DppD ABC-type dipeptid 100.0 9E-41 2E-45 324.5 19.8 210 261-478 2-235 (316)
297 TIGR02633 xylG D-xylose ABC tr 100.0 9.9E-41 2.1E-45 356.2 22.1 216 260-477 257-483 (500)
298 PRK10261 glutathione transport 100.0 7.6E-41 1.6E-45 364.9 21.2 211 260-477 12-249 (623)
299 COG3845 ABC-type uncharacteriz 100.0 1.6E-40 3.5E-45 335.9 21.1 213 260-477 4-220 (501)
300 PRK09700 D-allose transporter 100.0 2E-40 4.4E-45 354.6 23.2 211 260-477 265-489 (510)
301 COG4559 ABC-type hemin transpo 100.0 2.3E-40 4.9E-45 301.3 19.7 203 261-477 2-221 (259)
302 PRK10535 macrolide transporter 100.0 2.2E-40 4.9E-45 362.4 23.8 211 260-477 4-223 (648)
303 COG4525 TauB ABC-type taurine 100.0 1.3E-40 2.9E-45 298.9 17.5 206 261-477 4-215 (259)
304 PRK13541 cytochrome c biogenes 100.0 1.6E-40 3.4E-45 311.7 18.9 189 261-468 2-193 (195)
305 TIGR03269 met_CoM_red_A2 methy 100.0 1.9E-40 4E-45 355.6 21.4 211 260-477 279-508 (520)
306 COG1123 ATPase components of v 100.0 2.3E-40 5E-45 343.3 20.5 210 260-478 5-236 (539)
307 TIGR03269 met_CoM_red_A2 methy 100.0 2E-40 4.3E-45 355.4 20.4 207 261-477 1-249 (520)
308 PLN03211 ABC transporter G-25; 100.0 4.5E-40 9.8E-45 359.0 21.6 193 276-477 81-287 (659)
309 TIGR01257 rim_protein retinal- 100.0 9.5E-40 2.1E-44 382.8 24.5 210 259-477 927-1140(2272)
310 TIGR01257 rim_protein retinal- 100.0 6.6E-38 1.4E-42 367.4 39.7 209 260-477 1937-2150(2272)
311 PRK10762 D-ribose transporter 100.0 1.1E-39 2.4E-44 348.1 22.0 203 260-477 257-475 (501)
312 TIGR03771 anch_rpt_ABC anchore 100.0 1E-39 2.2E-44 312.6 19.6 177 284-477 1-192 (223)
313 TIGR00955 3a01204 The Eye Pigm 100.0 4.9E-40 1.1E-44 358.1 18.4 200 275-477 37-247 (617)
314 COG4608 AppF ABC-type oligopep 100.0 8E-40 1.7E-44 311.6 17.4 179 260-478 4-191 (268)
315 COG4172 ABC-type uncharacteriz 100.0 4.1E-39 8.9E-44 316.8 22.0 210 258-478 274-508 (534)
316 PRK13546 teichoic acids export 100.0 4.5E-39 9.8E-44 315.2 21.8 198 260-477 4-223 (264)
317 PRK13545 tagH teichoic acids e 100.0 8.8E-39 1.9E-43 332.8 24.5 198 260-477 21-223 (549)
318 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 3.5E-39 7.6E-44 287.9 18.5 143 261-474 1-144 (144)
319 PRK11288 araG L-arabinose tran 100.0 5.2E-39 1.1E-43 342.9 21.3 209 260-477 257-476 (501)
320 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.2E-38 2.5E-43 343.8 23.8 199 260-476 4-237 (552)
321 PRK11819 putative ABC transpor 100.0 9.8E-39 2.1E-43 344.5 23.1 199 260-476 6-239 (556)
322 COG4598 HisP ABC-type histidin 100.0 1.7E-39 3.6E-44 288.1 13.7 208 260-478 6-233 (256)
323 cd03236 ABC_RNaseL_inhibitor_d 100.0 4.9E-39 1.1E-43 313.3 18.3 199 264-476 4-217 (255)
324 cd03237 ABC_RNaseL_inhibitor_d 100.0 6.5E-39 1.4E-43 311.1 19.0 182 268-474 1-193 (246)
325 PRK15064 ABC transporter ATP-b 100.0 1.5E-38 3.3E-43 341.5 23.6 198 261-476 2-231 (530)
326 PRK15439 autoinducer 2 ABC tra 100.0 8.4E-39 1.8E-43 341.8 21.3 203 260-477 268-483 (510)
327 PRK10938 putative molybdenum t 100.0 6.4E-39 1.4E-43 341.4 18.9 208 260-477 260-483 (490)
328 KOG0060 Long-chain acyl-CoA tr 100.0 8.7E-37 1.9E-41 312.1 33.4 420 42-473 186-642 (659)
329 PRK10982 galactose/methyl gala 100.0 1.9E-38 4.2E-43 337.8 22.2 206 260-477 250-471 (491)
330 TIGR00956 3a01205 Pleiotropic 100.0 1.1E-38 2.4E-43 372.5 21.2 208 261-477 760-984 (1394)
331 COG4148 ModC ABC-type molybdat 100.0 9.3E-39 2E-43 301.3 15.8 186 281-477 16-209 (352)
332 PRK15064 ABC transporter ATP-b 100.0 4.8E-38 1E-42 337.7 23.2 190 260-476 319-514 (530)
333 COG4152 ABC-type uncharacteriz 100.0 4E-39 8.6E-44 298.7 12.7 203 260-476 2-209 (300)
334 COG4161 ArtP ABC-type arginine 100.0 1.9E-38 4E-43 276.9 15.2 208 260-478 2-222 (242)
335 COG1101 PhnK ABC-type uncharac 100.0 2.8E-38 6.1E-43 288.2 16.5 203 275-477 18-229 (263)
336 TIGR01187 potA spermidine/putr 100.0 3.6E-38 7.9E-43 317.9 18.8 175 294-477 1-181 (325)
337 cd00267 ABC_ATPase ABC (ATP-bi 100.0 1.2E-37 2.6E-42 282.0 19.3 154 263-474 2-157 (157)
338 PRK15177 Vi polysaccharide exp 100.0 6.2E-38 1.3E-42 298.1 17.6 177 278-477 2-183 (213)
339 COG4604 CeuD ABC-type enteroch 100.0 4.1E-38 9E-43 283.3 11.4 203 261-477 2-216 (252)
340 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6.7E-37 1.4E-41 330.1 23.0 192 260-476 322-520 (552)
341 cd03222 ABC_RNaseL_inhibitor T 100.0 4.1E-37 8.8E-42 282.9 17.6 144 264-475 4-150 (177)
342 PRK11819 putative ABC transpor 100.0 8.3E-37 1.8E-41 329.5 22.7 192 260-476 324-522 (556)
343 PRK11147 ABC transporter ATPas 100.0 7.5E-37 1.6E-41 334.4 21.8 195 260-477 319-518 (635)
344 PRK10636 putative ABC transpor 100.0 1.7E-36 3.6E-41 331.2 22.1 190 260-476 312-506 (638)
345 PRK13409 putative ATPase RIL; 100.0 1.5E-36 3.3E-41 327.4 20.8 188 260-475 340-531 (590)
346 PLN03073 ABC transporter F fam 100.0 3.3E-36 7.1E-41 330.5 22.2 190 260-476 508-703 (718)
347 COG1119 ModF ABC-type molybden 100.0 1.2E-36 2.6E-41 284.1 16.0 207 260-477 31-253 (257)
348 PLN03140 ABC transporter G fam 100.0 3.1E-36 6.8E-41 351.0 22.2 208 260-477 867-1101(1470)
349 cd03238 ABC_UvrA The excision 100.0 4.8E-36 1E-40 275.5 18.7 153 276-473 8-164 (176)
350 PRK10636 putative ABC transpor 100.0 5.3E-36 1.1E-40 327.3 22.4 198 261-476 2-225 (638)
351 PRK11147 ABC transporter ATPas 100.0 1.1E-34 2.4E-39 317.3 24.2 197 261-477 4-233 (635)
352 COG4674 Uncharacterized ABC-ty 100.0 1.9E-35 4.1E-40 265.8 14.4 212 260-476 5-225 (249)
353 PRK13409 putative ATPase RIL; 100.0 1.2E-35 2.6E-40 320.5 15.7 193 264-473 77-287 (590)
354 COG4136 ABC-type uncharacteriz 100.0 3.4E-35 7.4E-40 253.6 15.1 195 260-470 2-207 (213)
355 COG0396 sufC Cysteine desulfur 100.0 2.3E-34 5E-39 265.8 19.8 207 261-478 4-226 (251)
356 COG4172 ABC-type uncharacteriz 100.0 8.4E-35 1.8E-39 286.4 16.8 211 260-478 6-239 (534)
357 TIGR00956 3a01205 Pleiotropic 100.0 7.1E-35 1.5E-39 340.5 19.2 197 276-477 74-291 (1394)
358 COG0488 Uup ATPase components 100.0 2.6E-34 5.7E-39 303.2 20.0 198 260-476 3-229 (530)
359 COG4167 SapF ABC-type antimicr 100.0 1.3E-34 2.9E-39 257.5 13.4 206 261-478 5-231 (267)
360 PLN03140 ABC transporter G fam 100.0 2.9E-34 6.3E-39 334.6 17.9 199 276-477 178-418 (1470)
361 PLN03073 ABC transporter F fam 100.0 5.4E-34 1.2E-38 313.0 17.7 210 260-476 177-420 (718)
362 PF00005 ABC_tran: ABC transpo 100.0 3E-34 6.4E-39 253.4 11.4 136 279-428 1-137 (137)
363 KOG0061 Transporter, ABC super 100.0 1.7E-33 3.6E-38 304.6 17.7 211 259-477 24-251 (613)
364 COG4586 ABC-type uncharacteriz 100.0 7.4E-34 1.6E-38 267.7 12.6 193 277-477 38-237 (325)
365 COG4133 CcmA ABC-type transpor 100.0 6.1E-33 1.3E-37 248.8 12.5 188 261-463 3-195 (209)
366 KOG0064 Peroxisomal long-chain 100.0 1.6E-29 3.4E-34 255.7 37.7 443 6-470 179-681 (728)
367 cd03270 ABC_UvrA_I The excisio 100.0 5.3E-32 1.2E-36 259.6 17.8 191 275-478 7-225 (226)
368 COG4107 PhnK ABC-type phosphon 100.0 3.4E-32 7.3E-37 240.5 14.9 208 260-478 6-233 (258)
369 COG1134 TagH ABC-type polysacc 100.0 2.1E-31 4.5E-36 249.3 19.3 180 276-477 40-227 (249)
370 COG0488 Uup ATPase components 100.0 5E-31 1.1E-35 278.4 23.5 191 259-475 320-513 (530)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 2.4E-31 5.3E-36 249.5 13.5 164 280-472 14-190 (197)
372 cd03271 ABC_UvrA_II The excisi 100.0 1.3E-30 2.9E-35 253.4 16.0 191 277-478 9-258 (261)
373 KOG0059 Lipid exporter ABCA1 a 100.0 2.8E-30 6.1E-35 290.6 16.8 205 259-476 563-777 (885)
374 COG4778 PhnL ABC-type phosphon 100.0 1.5E-30 3.3E-35 229.2 9.2 202 260-472 4-227 (235)
375 cd03279 ABC_sbcCD SbcCD and ot 100.0 4.1E-30 8.9E-35 244.4 12.1 192 260-475 5-211 (213)
376 cd03272 ABC_SMC3_euk Eukaryoti 100.0 5.5E-30 1.2E-34 248.3 12.8 192 260-471 3-234 (243)
377 COG1129 MglA ABC-type sugar tr 100.0 5.2E-28 1.1E-32 249.8 19.0 209 260-477 263-481 (500)
378 cd03273 ABC_SMC2_euk Eukaryoti 100.0 2E-28 4.4E-33 238.6 12.9 180 289-474 25-247 (251)
379 cd03240 ABC_Rad50 The catalyti 100.0 5.7E-28 1.2E-32 228.0 13.3 163 282-472 16-197 (204)
380 COG4138 BtuD ABC-type cobalami 99.9 2.3E-28 4.9E-33 216.4 6.2 198 261-477 4-212 (248)
381 cd03274 ABC_SMC4_euk Eukaryoti 99.9 5.5E-28 1.2E-32 229.3 8.7 185 260-472 5-204 (212)
382 KOG0927 Predicted transporter 99.9 4.5E-27 9.8E-32 239.5 10.3 193 259-476 388-585 (614)
383 KOG0065 Pleiotropic drug resis 99.9 4.8E-27 1E-31 260.4 9.1 192 275-476 803-1011(1391)
384 cd03275 ABC_SMC1_euk Eukaryoti 99.9 3.8E-26 8.2E-31 222.1 12.6 203 260-472 3-233 (247)
385 PRK00635 excinuclease ABC subu 99.9 2.3E-25 5.1E-30 258.4 19.5 202 260-477 600-897 (1809)
386 COG3845 ABC-type uncharacteriz 99.9 1.2E-24 2.5E-29 221.0 20.5 208 259-477 256-483 (501)
387 PRK00349 uvrA excinuclease ABC 99.9 6.9E-25 1.5E-29 245.0 17.1 95 381-477 813-918 (943)
388 PF00664 ABC_membrane: ABC tra 99.9 4E-22 8.6E-27 192.3 29.7 210 4-214 65-275 (275)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.2E-24 4.8E-29 202.5 13.1 172 279-474 12-192 (198)
390 COG1245 Predicted ATPase, RNas 99.9 3.6E-24 7.8E-29 214.3 14.3 173 277-472 350-531 (591)
391 KOG0062 ATPase component of AB 99.9 1.1E-23 2.5E-28 213.7 15.9 194 258-476 360-558 (582)
392 TIGR00630 uvra excinuclease AB 99.9 2.6E-23 5.7E-28 232.0 19.8 90 388-477 816-916 (924)
393 KOG0927 Predicted transporter 99.9 5.3E-23 1.2E-27 209.9 15.5 211 259-476 74-298 (614)
394 KOG0066 eIF2-interacting prote 99.9 3.9E-23 8.5E-28 205.3 13.5 191 259-475 585-779 (807)
395 KOG0062 ATPase component of AB 99.9 8.1E-24 1.8E-28 214.7 8.8 187 259-473 79-271 (582)
396 COG4170 SapD ABC-type antimicr 99.9 3.2E-23 6.9E-28 188.7 10.5 209 262-478 5-240 (330)
397 KOG2355 Predicted ABC-type tra 99.9 5.9E-22 1.3E-26 180.0 15.1 204 259-477 12-228 (291)
398 cd03239 ABC_SMC_head The struc 99.9 4.9E-22 1.1E-26 183.4 13.7 85 382-472 83-172 (178)
399 cd03280 ABC_MutS2 MutS2 homolo 99.9 6.4E-22 1.4E-26 186.3 10.4 142 279-476 17-169 (200)
400 cd03241 ABC_RecN RecN ATPase i 99.9 6.4E-21 1.4E-25 188.4 15.5 76 399-474 170-249 (276)
401 cd03277 ABC_SMC5_euk Eukaryoti 99.9 3.9E-21 8.4E-26 182.5 12.5 180 280-474 15-211 (213)
402 COG1245 Predicted ATPase, RNas 99.8 1.6E-20 3.5E-25 188.2 10.7 188 265-471 79-287 (591)
403 KOG0065 Pleiotropic drug resis 99.8 1.4E-20 3E-25 209.4 11.3 199 276-477 128-342 (1391)
404 COG2401 ABC-type ATPase fused 99.8 6.7E-20 1.5E-24 181.8 13.4 178 276-476 396-588 (593)
405 cd03227 ABC_Class2 ABC-type Cl 99.8 3.9E-20 8.5E-25 168.3 10.4 137 282-472 14-155 (162)
406 cd03285 ABC_MSH2_euk MutS2 hom 99.8 2.5E-19 5.4E-24 171.2 9.5 148 276-476 17-171 (222)
407 cd03242 ABC_RecF RecF is a rec 99.8 1.3E-18 2.8E-23 171.4 14.4 193 279-475 12-269 (270)
408 cd01128 rho_factor Transcripti 99.8 6.6E-19 1.4E-23 170.4 11.5 180 284-477 11-213 (249)
409 PRK00635 excinuclease ABC subu 99.8 4.1E-18 8.9E-23 198.6 15.1 186 278-471 1505-1775(1809)
410 COG0178 UvrA Excinuclease ATPa 99.8 4.5E-18 9.9E-23 181.1 14.0 90 388-477 810-910 (935)
411 cd03283 ABC_MutS-like MutS-lik 99.8 1.6E-18 3.5E-23 162.9 8.0 137 277-464 15-154 (199)
412 cd03243 ABC_MutS_homologs The 99.7 7.2E-18 1.6E-22 159.0 10.5 147 281-477 21-170 (202)
413 cd00820 PEPCK_HprK Phosphoenol 99.7 5.1E-18 1.1E-22 141.8 5.6 76 276-359 2-77 (107)
414 TIGR00630 uvra excinuclease AB 99.7 8.3E-17 1.8E-21 180.1 13.6 95 381-477 470-574 (924)
415 PRK00349 uvrA excinuclease ABC 99.7 1.1E-16 2.5E-21 179.4 13.2 95 381-477 472-576 (943)
416 TIGR02858 spore_III_AA stage I 99.7 5.1E-16 1.1E-20 151.9 12.6 131 290-473 112-258 (270)
417 KOG0066 eIF2-interacting prote 99.7 1.8E-16 4E-21 158.1 8.7 203 260-475 264-487 (807)
418 TIGR00606 rad50 rad50. This fa 99.7 3.3E-16 7.1E-21 184.2 12.0 118 348-470 1153-1288(1311)
419 cd03282 ABC_MSH4_euk MutS4 hom 99.7 3.2E-16 6.8E-21 147.7 9.2 139 276-464 16-157 (204)
420 KOG0063 RNAse L inhibitor, ABC 99.6 1.2E-15 2.5E-20 152.3 12.0 181 268-472 343-532 (592)
421 cd03284 ABC_MutS1 MutS1 homolo 99.6 9.9E-16 2.1E-20 145.8 9.4 147 276-476 18-171 (216)
422 PF02463 SMC_N: RecF/RecN/SMC 99.6 2.3E-15 4.9E-20 143.7 8.6 72 399-470 136-211 (220)
423 PRK00064 recF recombination pr 99.6 4.8E-14 1E-18 144.4 17.1 76 398-475 272-359 (361)
424 PHA02562 46 endonuclease subun 99.5 1.6E-14 3.4E-19 156.8 7.4 92 383-475 446-555 (562)
425 smart00534 MUTSac ATPase domai 99.5 4.8E-14 1E-18 131.1 8.3 70 394-466 56-130 (185)
426 PRK07721 fliI flagellum-specif 99.5 6.5E-13 1.4E-17 138.1 16.6 171 276-477 146-334 (438)
427 cd03281 ABC_MSH5_euk MutS5 hom 99.5 1.9E-13 4E-18 129.9 11.5 134 278-464 18-160 (213)
428 TIGR01069 mutS2 MutS2 family p 99.4 7.1E-13 1.5E-17 147.1 13.5 144 260-461 295-448 (771)
429 TIGR00634 recN DNA repair prot 99.4 4.6E-13 9.9E-18 145.0 9.4 77 398-474 439-519 (563)
430 PTZ00132 GTP-binding nuclear p 99.4 3.1E-13 6.6E-18 128.5 6.9 44 403-446 156-204 (215)
431 KOG0063 RNAse L inhibitor, ABC 99.4 6.5E-13 1.4E-17 132.9 8.1 170 287-471 98-287 (592)
432 PRK10869 recombination and rep 99.4 1.8E-12 3.9E-17 139.5 11.4 76 398-473 429-508 (553)
433 PRK14079 recF recombination pr 99.3 1.7E-11 3.7E-16 125.0 15.5 74 398-476 262-344 (349)
434 TIGR00611 recf recF protein. A 99.3 1.6E-11 3.4E-16 125.8 15.0 63 398-462 274-345 (365)
435 PRK13695 putative NTPase; Prov 99.3 1.8E-12 3.9E-17 119.3 5.2 80 395-477 74-155 (174)
436 cd03287 ABC_MSH3_euk MutS3 hom 99.3 6.8E-12 1.5E-16 119.7 9.0 137 276-463 18-159 (222)
437 PRK00409 recombination and DNA 99.3 7.6E-12 1.7E-16 139.3 9.2 74 395-469 386-462 (782)
438 PRK08533 flagellar accessory p 99.3 5.4E-11 1.2E-15 114.4 13.8 157 261-471 8-184 (230)
439 cd01124 KaiC KaiC is a circadi 99.2 4.5E-11 9.7E-16 110.7 10.8 84 388-471 60-163 (187)
440 TIGR00618 sbcc exonuclease Sbc 99.2 3.3E-11 7.2E-16 139.5 10.4 78 396-473 947-1036(1042)
441 PRK01156 chromosome segregatio 99.2 5.5E-11 1.2E-15 135.9 10.3 76 396-471 798-883 (895)
442 TIGR02788 VirB11 P-type DNA tr 99.2 5.8E-11 1.3E-15 119.2 8.8 133 282-475 137-270 (308)
443 TIGR03238 dnd_assoc_3 dnd syst 99.2 1.5E-11 3.3E-16 126.9 4.5 66 277-345 20-86 (504)
444 PRK03918 chromosome segregatio 99.2 6.2E-11 1.3E-15 135.4 9.6 75 397-471 786-867 (880)
445 TIGR02168 SMC_prok_B chromosom 99.1 6.9E-11 1.5E-15 138.6 8.1 76 395-470 1085-1164(1179)
446 PF13304 AAA_21: AAA domain; P 99.1 1.3E-10 2.9E-15 111.2 8.2 64 398-461 235-302 (303)
447 cd03286 ABC_MSH6_euk MutS6 hom 99.1 4.7E-10 1E-14 106.7 11.7 137 276-463 17-158 (218)
448 PRK06793 fliI flagellum-specif 99.1 3.1E-10 6.8E-15 117.4 10.5 163 260-475 130-300 (432)
449 PRK10733 hflB ATP-dependent me 99.1 1.7E-11 3.6E-16 134.5 0.6 174 106-314 29-210 (644)
450 cd01120 RecA-like_NTPases RecA 99.1 9.6E-10 2.1E-14 98.6 11.8 129 291-461 1-140 (165)
451 PRK13830 conjugal transfer pro 99.1 1.6E-09 3.6E-14 121.9 15.5 63 414-476 649-723 (818)
452 cd01131 PilT Pilus retraction 99.1 3.3E-10 7.2E-15 106.5 8.2 119 291-471 3-122 (198)
453 TIGR02169 SMC_prok_A chromosom 99.1 3.4E-10 7.5E-15 132.8 9.4 76 397-472 1072-1151(1164)
454 smart00382 AAA ATPases associa 99.0 1.2E-08 2.5E-13 88.2 14.9 117 288-457 1-125 (148)
455 PRK10246 exonuclease subunit S 99.0 1.2E-09 2.5E-14 126.3 10.1 78 395-472 945-1032(1047)
456 COG3910 Predicted ATPase [Gene 99.0 3.1E-09 6.8E-14 96.2 10.5 78 398-476 128-207 (233)
457 PRK06067 flagellar accessory p 99.0 9.3E-09 2E-13 99.1 14.4 148 285-472 21-187 (234)
458 COG0178 UvrA Excinuclease ATPa 99.0 4.7E-09 1E-13 113.1 12.6 83 388-470 469-555 (935)
459 TIGR00767 rho transcription te 99.0 1.9E-09 4E-14 109.9 8.8 83 226-316 102-195 (415)
460 PRK00300 gmk guanylate kinase; 98.9 9.7E-10 2.1E-14 103.6 5.3 69 287-361 3-83 (205)
461 PRK02224 chromosome segregatio 98.9 2.5E-09 5.5E-14 122.2 8.8 76 397-472 779-868 (880)
462 PRK06002 fliI flagellum-specif 98.9 1E-08 2.3E-13 106.3 11.0 86 258-346 137-229 (450)
463 PRK13891 conjugal transfer pro 98.7 4.6E-07 1E-11 102.7 18.8 54 410-463 680-735 (852)
464 PRK07196 fliI flagellum-specif 98.7 1.2E-08 2.7E-13 105.7 5.3 83 275-358 142-234 (434)
465 TIGR01420 pilT_fam pilus retra 98.7 7E-08 1.5E-12 98.4 10.0 123 286-470 119-242 (343)
466 PRK11098 microcin B17 transpor 98.7 3.7E-05 8E-10 79.4 29.6 191 41-240 191-395 (409)
467 cd01130 VirB11-like_ATPase Typ 98.6 2.9E-08 6.3E-13 92.3 5.3 79 278-359 14-95 (186)
468 TIGR01026 fliI_yscN ATPase Fli 98.6 3.4E-07 7.3E-12 95.7 13.1 171 275-477 150-339 (440)
469 PRK12369 putative transporter; 98.6 7.9E-05 1.7E-09 75.2 29.3 222 4-240 87-321 (326)
470 cd01125 repA Hexameric Replica 98.6 9.6E-08 2.1E-12 92.4 7.8 45 413-458 107-159 (239)
471 TIGR02655 circ_KaiC circadian 98.6 8E-09 1.7E-13 110.0 0.1 156 285-471 17-190 (484)
472 PF09818 ABC_ATPase: Predicted 98.6 9.1E-07 2E-11 90.6 14.6 168 266-474 227-415 (448)
473 PRK06995 flhF flagellar biosyn 98.6 1E-07 2.3E-12 100.2 7.4 61 280-359 247-307 (484)
474 PRK01889 GTPase RsgA; Reviewed 98.6 7.3E-08 1.6E-12 98.6 6.0 82 278-362 184-265 (356)
475 TIGR02524 dot_icm_DotB Dot/Icm 98.6 1.3E-07 2.8E-12 96.6 7.3 72 287-359 132-211 (358)
476 PRK08149 ATP synthase SpaL; Va 98.5 2.3E-07 5E-12 96.2 8.8 70 276-346 139-215 (428)
477 cd02023 UMPK Uridine monophosp 98.5 1.5E-07 3.2E-12 88.3 5.0 108 291-433 1-114 (198)
478 PRK10078 ribose 1,5-bisphospho 98.5 1.7E-07 3.8E-12 87.0 5.3 55 289-346 2-56 (186)
479 COG0419 SbcC ATPase involved i 98.4 6E-07 1.3E-11 102.9 9.5 77 396-472 812-897 (908)
480 TIGR03881 KaiC_arch_4 KaiC dom 98.4 2.8E-07 6.1E-12 88.4 5.4 40 285-324 16-56 (229)
481 TIGR02322 phosphon_PhnN phosph 98.4 6.8E-07 1.5E-11 82.3 6.6 62 289-351 1-78 (179)
482 PRK13898 type IV secretion sys 98.4 2E-06 4.2E-11 97.4 11.5 49 413-461 638-688 (800)
483 PRK09825 idnK D-gluconate kina 98.4 4.2E-07 9.2E-12 83.8 5.0 65 288-358 2-68 (176)
484 TIGR02680 conserved hypothetic 98.4 6.7E-07 1.4E-11 105.8 7.8 61 396-458 1244-1316(1353)
485 PLN03210 Resistant to P. syrin 98.4 1.5E-06 3.3E-11 102.1 10.7 44 282-325 200-244 (1153)
486 TIGR00101 ureG urease accessor 98.4 9.8E-07 2.1E-11 83.0 7.3 104 291-404 3-108 (199)
487 PRK09183 transposase/IS protei 98.3 1.8E-06 4E-11 84.5 9.3 52 263-315 74-128 (259)
488 cd00009 AAA The AAA+ (ATPases 98.3 3.5E-06 7.5E-11 73.3 10.0 54 405-459 72-131 (151)
489 PRK10416 signal recognition pa 98.3 2.2E-06 4.8E-11 86.3 9.7 72 287-358 112-190 (318)
490 TIGR00235 udk uridine kinase. 98.3 3.2E-07 6.8E-12 86.8 3.3 29 287-315 4-32 (207)
491 PLN02796 D-glycerate 3-kinase 98.3 3.6E-07 7.8E-12 91.8 2.7 61 277-337 80-151 (347)
492 PF06472 ABC_membrane_2: ABC t 98.3 0.00036 7.9E-09 69.2 23.9 168 3-171 89-260 (281)
493 PRK05399 DNA mismatch repair p 98.3 4.6E-06 1E-10 94.5 11.1 66 400-466 667-738 (854)
494 COG3044 Predicted ATPase of th 98.2 1.6E-05 3.5E-10 80.1 13.4 155 284-474 238-410 (554)
495 cd01123 Rad51_DMC1_radA Rad51_ 98.2 3E-06 6.4E-11 81.5 7.8 72 285-362 15-93 (235)
496 PRK06315 type III secretion sy 98.2 1.3E-06 2.9E-11 90.9 5.4 83 276-359 152-252 (442)
497 TIGR02903 spore_lon_C ATP-depe 98.2 6.3E-06 1.4E-10 90.2 10.9 110 288-444 174-291 (615)
498 TIGR00152 dephospho-CoA kinase 98.2 7.6E-07 1.6E-11 82.9 2.9 69 403-473 61-133 (188)
499 PRK13873 conjugal transfer ATP 98.2 2.3E-05 4.9E-10 88.9 14.6 61 413-473 631-703 (811)
500 cd00071 GMPK Guanosine monopho 98.1 6.4E-07 1.4E-11 79.1 1.1 66 291-362 1-79 (137)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-103 Score=823.52 Aligned_cols=474 Identities=44% Similarity=0.709 Sum_probs=456.2
Q ss_pred eehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048556 2 ACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGW 81 (478)
Q Consensus 2 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (478)
+|+..++.++..++|.++|+++++++.+|||+. ++||+++|++.|+..+.+.+...+...+.+.+..++.+.+|+++||
T Consensus 210 ~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~ 288 (716)
T KOG0058|consen 210 GLLQYAGERVVARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSW 288 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 588999999999999999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG 161 (478)
Q Consensus 82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
.|+++.++.+|+++++..+++++.++..++.+++.++.++..+|.+++++|||+|+.|+.+.+||.+..++..+...+..
T Consensus 289 ~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a 368 (716)
T KOG0058|consen 289 RLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEA 368 (716)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556 162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 241 (478)
.....+.....+...+..+.++++|++++.+|.+|.|.+++|+.|...+..++..+...++.+.++..|.+|++|+++.+
T Consensus 369 ~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~ 448 (716)
T KOG0058|consen 369 VAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRK 448 (716)
T ss_pred HHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccC
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556 242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 321 (478)
|..+.. +...+....+.|+|+||+|+||.+++.++|+|+||+|+|||+||+|||||+||||++++|.++|+|++|+|.
T Consensus 449 P~i~~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il 526 (716)
T KOG0058|consen 449 PRIPLT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL 526 (716)
T ss_pred CCCCCC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 865533 111222456899999999999999888999999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556 322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401 (478)
Q Consensus 322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 401 (478)
+||+|++++++..+|++||+|.|||.||++||+|||.||.+++++|++..|++.+++|+||..+|+||||.+||+|..||
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
|||||||||||||++||.||||||+|||||.++|..+.++|.+..+++|||+|+||++++++||+|+|+++|+++|.
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~ 683 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEM 683 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEec
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999874
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.2e-96 Score=795.37 Aligned_cols=472 Identities=34% Similarity=0.540 Sum_probs=451.8
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.|+..++-.++|+|++++|..||+++ ++||+++|+. |.+++.++++..+...+.+++++++.+++|++++|.
T Consensus 217 ~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~ 294 (709)
T COG2274 217 LIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWK 294 (709)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcCcHHHccCC-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999 8999999996 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++.+|+++++..++.+.+++..++..+..++.++.+.|++.|++++|+.+.|+++..+|++...++.+..++..+
T Consensus 295 L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~ 374 (709)
T COG2274 295 LTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEK 374 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
.......+..++..+..++++|+|+++|++|++|+|.++++..+...+..|+..+.+.+..+++...+.+|+.++++.++
T Consensus 375 ~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~ 454 (709)
T COG2274 375 LALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPP 454 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
|.+... .....+...++|+++||+|+|+.+ ++++|+|+|++|+|||++||||+||||||||+|+|+|+|+|++|+|++
T Consensus 455 E~~~~~-~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~ 532 (709)
T COG2274 455 EQEGDK-TLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILL 532 (709)
T ss_pred cccccc-ccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 644322 112345566899999999999865 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
||.|+.+++..++|++|+||+||+.+|+|||+||+++++|++++|++++||+.++++++|.++|.||+|.+||+|.+|||
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSG 612 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSG 612 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
||||||+|||||+++|+||||||||||||+++|+.|.++|.+...++|+|+||||++++++||||+|||+|+|+|+
T Consensus 613 GQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~ 688 (709)
T COG2274 613 GQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQ 688 (709)
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceecc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999974
No 3
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3e-93 Score=783.60 Aligned_cols=477 Identities=48% Similarity=0.799 Sum_probs=452.7
Q ss_pred eehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048556 2 ACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGW 81 (478)
Q Consensus 2 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (478)
|++...|+++..++|.++|+++++++..|||+..++|.+.+|+.+|...++..+...+..++..+..+++.+++.|+++|
T Consensus 729 ~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W 808 (1228)
T KOG0055|consen 729 YFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGW 808 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999997667799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG 161 (478)
Q Consensus 82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
.++++.+...|++++......+.+.....+.....++..+...|++++++||++|+.|+++.+.|.+..++..+...+..
T Consensus 809 ~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~ 888 (1228)
T KOG0055|consen 809 RLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG 888 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556 162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 241 (478)
.+.++...+.+++..+...+++|+|++++.+|.++..+++-++..+......+.+.....+.+.+++.|+.+++++++++
T Consensus 889 ~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~ 968 (1228)
T KOG0055|consen 889 LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRK 968 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999988877777777788888888999999999999999999998
Q ss_pred CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556 242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 321 (478)
|..+...+.+...+..+|+|+++||+|+||.+|+.++|+|+||+|++|+.+||||||||||||++.||.|+|+|++|.|.
T Consensus 969 ~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~ 1048 (1228)
T KOG0055|consen 969 PTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVK 1048 (1228)
T ss_pred CCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 75443222233345567899999999999999989999999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556 322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401 (478)
Q Consensus 322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 401 (478)
+||+|+++++.+.+|++++.|+|+|.||++||||||+||.+.++.+|+.+|++.+.+|+||.+||+||||.+||+|.+||
T Consensus 1049 IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLS 1128 (1228)
T KOG0055|consen 1049 IDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLS 1128 (1228)
T ss_pred ECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCC
Confidence 99999999999999999999999999999999999999966689999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
||||||||||||++|||+||||||+|||||.++|+.+.++|.+...+||+|+|+||++++++||.|+|+++|+|+|+
T Consensus 1129 GGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1129 GGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred chHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985
No 4
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.8e-89 Score=745.00 Aligned_cols=470 Identities=24% Similarity=0.303 Sum_probs=416.8
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...++.++..++.++++++++++++|.
T Consensus 86 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (588)
T PRK11174 86 VGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGK-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWA 164 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhhccC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999998 89999999999999999999999999999988888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..+++.+...+..+
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK11174 165 AGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLR 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888889999999999999999999999999999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDV---------INVIFCVMIGSMSLGQASPCISAFAAGQAAAYK 233 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l---------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~r 233 (478)
.......+..++..+..+++++++++.+ .|.+|+|++ ++++.+...+..|+..+...+..++++.++.+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 323 (588)
T PRK11174 245 MAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAES 323 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666666666655555555555544 488888864 111233345567999999999999999999999
Q ss_pred HHHHHccCCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 234 LFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 234 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+.++++.+++..... +...+....+.|+++||+|.|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|
T Consensus 324 i~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 324 LVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred HHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 999998654322111 10111112346999999987764 357999999999999999999999999999999999999
Q ss_pred CCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccc
Q 048556 314 DPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMV 393 (478)
Q Consensus 314 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~ 393 (478)
|++|+|.+||+|+.+++.+++|++|+||||+|++|+|||+|||++++|+++++|++++++.++++++++.+|+||||.+
T Consensus 401 -p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~v 479 (588)
T PRK11174 401 -PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPI 479 (588)
T ss_pred -CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473 (478)
Q Consensus 394 ~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G 473 (478)
||+|.+|||||||||+||||++++|++||||||||+||++++++|.+.|++..+++|+|+||||+++++.||+|++|++|
T Consensus 480 ge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred EEeeC
Q 048556 474 KLVEK 478 (478)
Q Consensus 474 ~i~~~ 478 (478)
+++|+
T Consensus 560 ~i~e~ 564 (588)
T PRK11174 560 QIVQQ 564 (588)
T ss_pred eEeec
Confidence 99874
No 5
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.4e-88 Score=730.93 Aligned_cols=470 Identities=36% Similarity=0.605 Sum_probs=437.2
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.+...++|.++|++++++|+.+|++. ++|++++|+++|++.++..+......+...++.+++.+++++..+|.
T Consensus 75 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (567)
T COG1132 75 LGSRLGQKIVADLRRDLFEKLLRLPLSFFDKA-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWR 153 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcC-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45567789999999999999999999999998 89999999999999999999998666665788888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++..|++.+...++.++.++..+..++..+++++.+.|.++|++++|+|+.++...+++.+..++..+...+..+
T Consensus 154 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (567)
T COG1132 154 LALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASR 233 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998988888888888999999999999999999999999999999999999999999999998888888788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
..+...+...++..+...+++++|++++..+.+++|.+++++.+...+..|+..+...+..+..+..+++|++++++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 313 (567)
T COG1132 234 LEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEP 313 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+..+... ......++|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 314 ~~~~~~~---~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 314 EVEDPPD---PLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred cccCCCC---CCCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 4332211 12223467999999999974 358999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
||+|+++++.+++|++|+||||+++||++||+|||.+|+|++++||+++|++.++++|+++++|+||||.+||+|.+|||
T Consensus 389 dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg 468 (567)
T COG1132 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468 (567)
T ss_pred CCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
||||||+||||++++||++|||||||+||+++|+.|.+.+.+..++||+|+||||++++++||+|+|||+|+++|.
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~ 544 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVER 544 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999988888999999999999999999999999999874
No 6
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.3e-90 Score=760.86 Aligned_cols=476 Identities=61% Similarity=1.000 Sum_probs=454.2
Q ss_pred eehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048556 2 ACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGW 81 (478)
Q Consensus 2 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (478)
.||.+.+.|...++|..+++.+++++..|||.. .+|++.+++++|++.+++.+..-+..++..+..++..+++.|+.+|
T Consensus 93 ~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W 171 (1228)
T KOG0055|consen 93 SCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGW 171 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999998 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG 161 (478)
Q Consensus 82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
+++++++.+.|++.+....+.+.+.+...+.++++++..+..+|++.+++|+.+|+-|+.+.++|.+..+...+...+..
T Consensus 172 ~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g 251 (1228)
T KOG0055|consen 172 KLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKG 251 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556 162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 241 (478)
.+.++...+..++........+|+|+.++..+..+.|+++.++..+......+.+..+.+..+..+.+|+.++++.++..
T Consensus 252 ~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~ 331 (1228)
T KOG0055|consen 252 LFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRK 331 (1228)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCC
Confidence 99999999999999999999999999999999999999998887777777889999999999999999999999999987
Q ss_pred CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556 242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 321 (478)
|..+....++.......+.|+|+||+|+||.+++.++|+|+||+|++|+++||||||||||||++++|.|+|+|++|+|+
T Consensus 332 ~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~ 411 (1228)
T KOG0055|consen 332 PSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVL 411 (1228)
T ss_pred CCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEE
Confidence 75443221222334466899999999999998888999999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556 322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401 (478)
Q Consensus 322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 401 (478)
+||.|+.+++.+++|++||.|.|+|.||++||+|||.+|.|+++.+++.+|++.++.++||..+|+||||++||+|.+||
T Consensus 412 idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLS 491 (1228)
T KOG0055|consen 412 IDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLS 491 (1228)
T ss_pred EcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
|||||||||||||+++|+||||||||||||+++|+.+.++|.+..+++|+|+||||++++++||+|+||++|+|+|+
T Consensus 492 GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 492 GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQ 568 (1228)
T ss_pred hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999984
No 7
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=9.6e-88 Score=743.13 Aligned_cols=467 Identities=27% Similarity=0.367 Sum_probs=432.1
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|..+|+|++++|+.+|+++ ++|++++|+. |++.+++++...+...+...+.++++++++++++|+
T Consensus 199 ~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (686)
T TIGR03797 199 AVLRLETRMDASLQAAVWDRLLRLPVSFFRQY-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWK 276 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999998 8999999997 799999999988888887877777888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+++.|+.+.++|++..++..+...+..+
T Consensus 277 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 356 (686)
T TIGR03797 277 LALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQR 356 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888889999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
.......+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..++++..+.+|+.++++.++
T Consensus 357 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 436 (686)
T TIGR03797 357 IENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALP 436 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999998655
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+.+.. ...+....+.|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+|+|+|+|+|++|+|.+
T Consensus 437 e~~~~---~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 512 (686)
T TIGR03797 437 EVDEA---KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFY 512 (686)
T ss_pred ccccC---cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 43211 11112234579999999999753 368999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
||+|+++++.+++|++|+||||++++|+|||+|||++++| +++++++++++.++++++++.+|+|+||.+||+|.+|||
T Consensus 513 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG 591 (686)
T TIGR03797 513 DGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG 591 (686)
T ss_pred CCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 9999999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
||||||+||||++++|+++|||||||+||+++|+++.+.|++. ++|+|+||||+++++.||+|+||++|+++|.
T Consensus 592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~ 665 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ 665 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999886 5899999999999999999999999999863
No 8
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1e-87 Score=743.69 Aligned_cols=471 Identities=38% Similarity=0.593 Sum_probs=433.3
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+....+.++..++|..+|++++++|..+|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.
T Consensus 224 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~ 302 (711)
T TIGR00958 224 SFNYTMARINLRIREDLFRSLLRQDLGFFDEN-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPR 302 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34578889999999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||.|+.|+.+.++|.+..++..+...+...
T Consensus 303 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 382 (711)
T TIGR00958 303 LTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKAL 382 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988999999999999999999999999999999999999999999999999999999998888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
..........++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+...+..++++..+.+|+.++++.++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 462 (711)
T TIGR00958 383 AYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKP 462 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 66666666677777788888899999999999999999999999999999999999999999999999999999998765
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+.+... ...+.+..+.|+++||+|+|++++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 463 ~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 463 NIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred CCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 432211 111222345799999999998654468999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
||+|+++++.+++|++|+||||+|++|++||||||+++.++.++++++++++.++++++++++|+|+||.+||+|.+|||
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
||||||+||||++++|+++|||||||+||+++|+.+.+ . ...+++|+|+||||+++++.||+|++|++|+|+|+
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~ 694 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEM 694 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999 3 33468999999999999999999999999999873
No 9
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.9e-87 Score=741.68 Aligned_cols=471 Identities=27% Similarity=0.420 Sum_probs=436.1
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|..+|+|++++|+.+ +++ ++|++++|+ +|++.+++++...+...+..++.++++++++++++|+
T Consensus 210 ~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~-~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 286 (694)
T TIGR03375 210 FLDVAGKKADLILSAKLFERVLGLRMEA-RPA-SVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGP 286 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccc-CCC-ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4567889999999999999999999998 676 899999999 7999999999988888888877777778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
++++.++.+|+++++..++.++.++..++..+..++..+.+.|+++|+++||.++.|+.+.++|++..+++.+...+..+
T Consensus 287 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 366 (694)
T TIGR03375 287 LVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRF 366 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
.......+..++..+..++++++|++++.+|.+|+|+++++..++..+..|+..+...+..++.+..+.+|+.++++.++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 446 (694)
T TIGR03375 367 LSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPV 446 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+.+... .....+...+.|+++||+|+|++. ++++|+|+||+|+|||++||+||||||||||+++|+|+|+|++|+|.+
T Consensus 447 e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 524 (694)
T TIGR03375 447 ERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL 524 (694)
T ss_pred CCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 432211 111112234579999999999753 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
||+|+.+++.+++|++|+||||++++|+|||+|||++++|++++++++++++.++++++++.+|+||||.+||+|.+|||
T Consensus 525 dg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSg 604 (694)
T TIGR03375 525 DGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSG 604 (694)
T ss_pred CCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
||||||+||||++++|+++|||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+++|+
T Consensus 605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~ 680 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVAD 680 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEee
Confidence 9999999999999999999999999999999999999999998889999999999999999999999999999873
No 10
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.4e-87 Score=742.92 Aligned_cols=470 Identities=26% Similarity=0.356 Sum_probs=434.8
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|.++|+|++++|+.+|+++ ++|++++|+++| +.+++++...+...+..++.+++.++++++++|+
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 294 (710)
T TIGR03796 217 YLRRLQIKLAVGMSARFLWHILRLPVRFFAQR-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPV 294 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34668889999999999999999999999998 899999999987 6899999999998899999999888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++.+|+++++..++.++..+..++.++..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+..+
T Consensus 295 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 374 (710)
T TIGR03796 295 LTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGV 374 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
.......+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..++++..+.+|+.++++.++
T Consensus 375 ~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 454 (710)
T TIGR03796 375 LTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CcccCCC---C-CCcc-CCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCc
Q 048556 243 LIDAYDS---N-GVKL-DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA 317 (478)
Q Consensus 243 ~~~~~~~---~-~~~~-~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~ 317 (478)
+...... . .... +...+.|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+|+|++
T Consensus 455 e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred ccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 4322110 0 0111 2234679999999999853 3589999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCC
Q 048556 318 GEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHG 397 (478)
Q Consensus 318 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g 397 (478)
|+|.+||+|+.+++.+++|++|+||||++++|+|||+|||+++.|++++++++++++.+++++++.++|+|+||.+||+|
T Consensus 534 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred cEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 398 ~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
.+|||||||||+||||++++|+++|||||||+||+++|++|.+.|++ .++|+|+||||+++++.||+|++|++|++++
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999987 4799999999999999999999999999986
No 11
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.1e-87 Score=741.51 Aligned_cols=469 Identities=28% Similarity=0.429 Sum_probs=432.6
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|.++|+|++++|+.+|+++ ++|++++|++ |++.+.+++.......+..++.+++.++++++++|+
T Consensus 219 ~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (708)
T TIGR01193 219 LLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNML 296 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45668889999999999999999999999998 8999999998 899999999888888888887878888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++.+|+++++..++.++.++..++.++..++..+.+.|+++|+++||++|.|+.+.++|.+...++.+...+..+
T Consensus 297 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 376 (708)
T TIGR01193 297 LFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQK 376 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
.......+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+...+..++++..+.+|+.++++.++
T Consensus 377 ~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 456 (708)
T TIGR01193 377 ADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDS 456 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77777777777778888889999999999999999999999999999999999999999999999999999999998665
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+.+... .....+...+.|+++||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++
T Consensus 457 e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i 533 (708)
T TIGR01193 457 EFINKK-KRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 (708)
T ss_pred cccccc-cccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence 432211 10112233467999999999973 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG-KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~-~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 401 (478)
||+|+.+++.+++|++|+||||++++|+|||+|||.++ .|++++++++++++.++++++++.+|+||||.+||+|.+||
T Consensus 534 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LS 613 (708)
T TIGR01193 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613 (708)
T ss_pred CCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCC
Confidence 99999999999999999999999999999999999999 57899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
|||||||+||||++++|++||||||||+||+++|+.+.+.|++. +++|+|+||||+++++.||+|++|++|+++|
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~ 688 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIE 688 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999885 6799999999999999999999999999986
No 12
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.4e-86 Score=721.74 Aligned_cols=471 Identities=32% Similarity=0.535 Sum_probs=435.4
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|..+|+++++.|..+|++. ++|++++|+++|++.+++.+...+..++..++.++++++++++++|+
T Consensus 88 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (582)
T PRK11176 88 CISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++++|+.+++..++.+++++..++.++..++..+.+.|.++|++++|+++.++.+.++|++..+++.+...+..+
T Consensus 167 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T PRK11176 167 LSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999898888888889999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
.......+..++..+..++++++|++.+.+|.+|+|+++++..++..+..|+..+...+..++++..+.+|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 326 (582)
T PRK11176 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQ 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888888999999999999999999998888888889999999999999999999999999987654
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+.+... ...+...+.|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++
T Consensus 327 ~~~~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i 402 (582)
T PRK11176 327 EKDEGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILL 402 (582)
T ss_pred cCCCCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEE
Confidence 322111 1112223569999999999753 358999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG-ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~-~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 401 (478)
||+|+++++.+++|++|+||||++++|++|++|||+++.++ .++++++++++.++++++++++|+|+||.+|++|.+||
T Consensus 403 ~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LS 482 (582)
T PRK11176 403 DGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482 (582)
T ss_pred CCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCC
Confidence 99999999999999999999999999999999999999764 79999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
|||||||+||||++++|+++|||||||+||+++++++.+.|++..+++|+|+||||++.++.||+|++|++|+++|+
T Consensus 483 GGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~ 559 (582)
T PRK11176 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVER 559 (582)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999998788999999999999999999999999999873
No 13
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.3e-86 Score=719.38 Aligned_cols=470 Identities=23% Similarity=0.350 Sum_probs=427.2
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...++.++..++.++++++++++++|.
T Consensus 83 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (574)
T PRK11160 83 VSHDATFRVLTHLRVFTFSKLLPLSPAGLARY-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLT 161 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccChHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888999999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVL-TAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG 161 (478)
Q Consensus 83 l~li~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
+++++++++|+.++ ++.++.++.++..++.++..+++++.+.|.++|++++|+|+.|+.+.++|++..+++.+...+..
T Consensus 162 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (574)
T PRK11160 162 LALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQA 241 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888876654 45677788888899999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 048556 162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMI-GSMSLGQASPCISAFAAGQAAAYKLFEAIER 240 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~ 240 (478)
+..+....+..++..+..++++++|++++ +|.+++|.+++++.+... ...|+..+...+..++++.++++|+.++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~ 320 (574)
T PRK11160 242 NLTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQ 320 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888888888888888889999884 899999999987766544 4457888888899999999999999999987
Q ss_pred CCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320 (478)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 320 (478)
+++.+.... .......+.|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|
T Consensus 321 ~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I 397 (574)
T PRK11160 321 KPEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397 (574)
T ss_pred CCCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 654322111 1111233579999999999753 3579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCC
Q 048556 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQL 400 (478)
Q Consensus 321 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~L 400 (478)
++||+++.+++.+++|++++||||+|++|++|++||++++.|++++++++++++.+++++++++ |+||||.+||+|.+|
T Consensus 398 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~L 476 (574)
T PRK11160 398 LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQL 476 (574)
T ss_pred EECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
|||||||++||||++++|+++|||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|+++|.
T Consensus 477 SgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~ 554 (574)
T PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQ 554 (574)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999998888999999999999999999999999999873
No 14
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=7.4e-87 Score=715.99 Aligned_cols=452 Identities=26% Similarity=0.357 Sum_probs=409.0
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...+..++..++.++++++++++++|.
T Consensus 76 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (529)
T TIGR02868 76 VGHDAALRSLGRLRVRVYDRLARLALAGRRRF-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVP 154 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCccccccC-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34567788899999999999999999999998 89999999999999999999999999999998888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMS-TVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG 161 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
+++++++.+|++.++..++. +..++..++.++..+++.+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..
T Consensus 155 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (529)
T TIGR02868 155 AALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAA 234 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888777666554444 44466677778888999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556 162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 241 (478)
+..+.......++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+...+..++++.++.+|+.++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~ 314 (529)
T TIGR02868 235 RATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAK 314 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888888888888888888899999999999999999999999988888999999999999999999999999999866
Q ss_pred CCcccCCCC-CCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556 242 PLIDAYDSN-GVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320 (478)
Q Consensus 242 ~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 320 (478)
++....... ........+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 392 (529)
T TIGR02868 315 GPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV 392 (529)
T ss_pred CCcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 542211110 00111123569999999999753 469999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCC
Q 048556 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQL 400 (478)
Q Consensus 321 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~L 400 (478)
.+||+|+.++ .+++|++|+||||+|++|+|||+|||++|.|++++++++++++.+++++++.++|+||||.+||+|.+|
T Consensus 393 ~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L 471 (529)
T TIGR02868 393 TLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARL 471 (529)
T ss_pred EECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCc
Q 048556 401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRL 458 (478)
Q Consensus 401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~ 458 (478)
||||||||+||||++++|+++|||||||+||+++|+.|.+.+++..+++|+|+||||+
T Consensus 472 SGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 472 SGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999999988899999999995
No 15
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-86 Score=681.65 Aligned_cols=470 Identities=27% Similarity=0.389 Sum_probs=435.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 048556 5 IVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLT 84 (478)
Q Consensus 5 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (478)
.+.+.++...+|..+++|+.++++.+-.+. ++|+..+.+...++.++.|+..++|.+..+.+.++..++.+++.+|.-+
T Consensus 65 ~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~-~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aa 143 (559)
T COG4988 65 YRAAAKVRASLRQLVLDKLAKLGPAFIAQK-PAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAA 143 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 457788899999999999999999999887 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 85 LVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAA 164 (478)
Q Consensus 85 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (478)
+++++++|++.+.+..++.+.++..+++++....+++.+.|.++|+.|+|.|+..+...++..+..+++++.+|+.-+..
T Consensus 144 lIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriA 223 (559)
T COG4988 144 LILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIA 223 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 048556 165 GLGFGAFTFVAFSSYSLAIWFGGKMILE-KGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPL 243 (478)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~g~~lv~~-g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 243 (478)
-.+..+..++..+...++..+.+..... |.++....+.++.++.-.+.|+..++..+..-+.+.++.+.++.+++.+++
T Consensus 224 flSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~ 303 (559)
T COG4988 224 FLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVA 303 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCC
Confidence 8888899999988888777766666677 899999888888888888999999999999999999999999999987654
Q ss_pred cccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEEC
Q 048556 244 IDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 323 (478)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 323 (478)
..............+.+++.+|++|.|++. +++++|+||++++|+++||||+||||||||+++|+|+.+|++|+|.+|
T Consensus 304 ~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vn 381 (559)
T COG4988 304 TPGSGEKAEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVN 381 (559)
T ss_pred CCCCccccccccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEEC
Confidence 332211001111223345666999999853 489999999999999999999999999999999999999999999999
Q ss_pred CeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556 324 GVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG 403 (478)
Q Consensus 324 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 403 (478)
|++..+++.++||++++||||+|++|+||+||||++++|++++++++++++.+++.++++. |+|+||.+||+|.+||||
T Consensus 382 g~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgG 460 (559)
T COG4988 382 GIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGG 460 (559)
T ss_pred CccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
|+||+++||||++++++++||||||+||.+||+.|.+.|.++.+++|+|+||||++.+++||+|+|||+|+++|+
T Consensus 461 Q~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~ 535 (559)
T COG4988 461 QAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQ 535 (559)
T ss_pred HHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999874
No 16
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4e-86 Score=770.45 Aligned_cols=471 Identities=31% Similarity=0.508 Sum_probs=414.1
Q ss_pred eehHHHHHHHHHHHHHHHHHHHHcCChhhhhc--cCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 2 ACWIVTGERQAARIRGLYLKTLLRQDIGFFDK--ETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSK 79 (478)
Q Consensus 2 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (478)
|+..+.++++..++|.++|++++++|+.||++ + ++|++++|+++|++.++..+...+..++..++.+++++++++++
T Consensus 888 ~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~-~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~ 966 (1466)
T PTZ00265 888 YYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKH-APGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF 966 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999985 5 79999999999999999999999999999999999998899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHcHHHHHHHhchHHH
Q 048556 80 GWLLTLVMLSSIPAIVLTAGVMSTVITKLA-SR-----------------GQTAYSIAAAVAEQTIGSIRTVASFTGEKQ 141 (478)
Q Consensus 80 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 141 (478)
+|.+++++++++ +++...+.++.+... ++ ..+..++.+..++|+++|+++||+|+.|+.
T Consensus 967 ~~~l~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~ 1043 (1466)
T PTZ00265 967 CPIVAAVLTGTY---FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDY 1043 (1466)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHH
Confidence 999887765433 333334444332211 11 123356678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 142 AVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCI 221 (478)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~ 221 (478)
+.++|.+..++..+...+.....++...+..++..+..++++|+|++++..|.+|+|++++++.++.....++..+...+
T Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~ 1123 (1466)
T PTZ00265 1044 FCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLK 1123 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888888889999999999999999999999988766655555777888889
Q ss_pred HHHHHHHHHHHHHHHHHccCCCcccCCCCCCc---cCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCC
Q 048556 222 SAFAAGQAAAYKLFEAIERKPLIDAYDSNGVK---LDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQS 298 (478)
Q Consensus 222 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~s 298 (478)
..+++++++++|++++++.+++.+....+... ++...+.|+|+||+|+|+++++.++|+|+||+|++|+++||||||
T Consensus 1124 ~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~S 1203 (1466)
T PTZ00265 1124 GDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGET 1203 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCC
Confidence 99999999999999999876533211111111 122346799999999998654568999999999999999999999
Q ss_pred CCChHHHHHHHhccCCC------------------------------------------------------CccEEEECC
Q 048556 299 GSGKSTVISLIERFYDP------------------------------------------------------QAGEVLIDG 324 (478)
Q Consensus 299 GsGKSTL~~ll~g~~~~------------------------------------------------------~~G~i~~~g 324 (478)
|||||||+++|+|+|+| ++|+|++||
T Consensus 1204 GsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG 1283 (1466)
T PTZ00265 1204 GSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDG 1283 (1466)
T ss_pred CCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECC
Confidence 99999999999999998 699999999
Q ss_pred eecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556 325 VNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ 404 (478)
Q Consensus 325 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 404 (478)
+|+++++.+++|++|+||||+|+||+|||+|||++|.|+++++++++|++.++++++|..||+||||.+||+|.+|||||
T Consensus 1284 ~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQ 1363 (1466)
T PTZ00265 1284 VDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQ 1363 (1466)
T ss_pred EEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeC----CEEe
Q 048556 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQ----GKLV 476 (478)
Q Consensus 405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~----G~i~ 476 (478)
||||||||||+++|+|||||||||+||+++|+.|.+.|.+.. +++|+|+||||+++++.||+|+||++ |+++
T Consensus 1364 kQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv 1441 (1466)
T PTZ00265 1364 KQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFV 1441 (1466)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEE
Confidence 999999999999999999999999999999999999999884 68999999999999999999999999 8854
No 17
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.1e-84 Score=719.39 Aligned_cols=470 Identities=29% Similarity=0.465 Sum_probs=435.4
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|.++|+|++++|+.+|+++ ++|++++|+ +|++.+++++...+...+..++.+++.++++++++|.
T Consensus 202 ~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 279 (694)
T TIGR01846 202 LFAHLTSRIDVELGARLYRHLLGLPLGYFESR-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPT 279 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCC-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999998 899999999 6999999999888888887777777777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++++|+++++..++.++.++..++..+..++.++.+.|.++|+++||++|.|+.+.++|++..+++.+...+..+
T Consensus 280 l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 359 (694)
T TIGR01846 280 LTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTN 359 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
.......+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+.+.+..++++..+.+|+.++++.++
T Consensus 360 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 439 (694)
T TIGR01846 360 LGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPT 439 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+.... +....+...+.|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++
T Consensus 440 e~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~i 516 (694)
T TIGR01846 440 EPRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLV 516 (694)
T ss_pred CccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 43211 111122334679999999999743 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
||+++.+++.+++|++++||||++++|++|++|||+++.|++++++++++++.++++++++.+|+|+||.+|++|.+|||
T Consensus 517 dg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSg 596 (694)
T TIGR01846 517 DGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSG 596 (694)
T ss_pred CCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
|||||++||||++++|+++|||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|++++
T Consensus 597 Gq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~ 671 (694)
T TIGR01846 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAE 671 (694)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999878899999999999999999999999999986
No 18
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.3e-84 Score=704.83 Aligned_cols=470 Identities=34% Similarity=0.554 Sum_probs=439.0
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++...+|..+|+++++.|.+++++. ++|++++|+++|++.+++++...+..++..++.++++++++++++|+
T Consensus 77 ~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 155 (571)
T TIGR02203 77 LLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQ 155 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45678889999999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++++|+.+++..++.++.++..++..+..++..+.+.|.++|++++|.++.++.+.++|++..++..+...+..+
T Consensus 156 l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (571)
T TIGR02203 156 LTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTS 235 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
.......+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..+++++.+.+|+.++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (571)
T TIGR02203 236 AGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPP 315 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999998655
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+.+... .......+.|+++||+|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++
T Consensus 316 ~~~~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i 391 (571)
T TIGR02203 316 EKDTGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL 391 (571)
T ss_pred CCCCCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEE
Confidence 432111 1111233579999999999754 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD-GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~-~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 401 (478)
||+++++++.+++|++++|+||+|++|+||++|||+++++ +.++++++++++.+++++++.++|+|+||.+|++|.+||
T Consensus 392 ~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LS 471 (571)
T TIGR02203 392 DGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLS 471 (571)
T ss_pred CCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCC
Confidence 9999999999999999999999999999999999999986 789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
|||||||+||||++++|++++||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++
T Consensus 472 gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~ 547 (571)
T TIGR02203 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVE 547 (571)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEe
Confidence 9999999999999999999999999999999999999999999888899999999999999999999999999976
No 19
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2e-84 Score=697.08 Aligned_cols=463 Identities=28% Similarity=0.370 Sum_probs=421.0
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|..+|++++++|..+|++. ++|++++|+++|++.+++++...+..++..++.++++++++++++|.
T Consensus 67 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (529)
T TIGR02857 67 AAARAAAAVKSQLRERLLAAVAALGPGWLQGR-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWI 145 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhhccC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45567889999999999999999999999998 89999999999999999999998888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+
T Consensus 146 l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 225 (529)
T TIGR02857 146 SGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLR 225 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888887778888888888999999999999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
..........++..+..+++++++++.+.+|.+|+|.++++..++..+..|+..+...+..++++..+.+|+.++++.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~ 305 (529)
T TIGR02857 226 IAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPR 305 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 77777777777777776666667778888999999999999888888889999999999999999999999999997543
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+..... .......+.|+++||+|+|+++ ++++|+|+||+|+|||+++|+||||||||||+++|+|+|+|++|+|.+
T Consensus 306 ~~~~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~ 381 (529)
T TIGR02857 306 PLAGKA---PVTAAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAV 381 (529)
T ss_pred ccCCCc---CCCCCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 211111 1111112479999999999854 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
||.|+.+++.+++|++++||||+|++|++|++||++++.|+.++++++++++.++++++++++|+||||.+||+|.+|||
T Consensus 382 ~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSg 461 (529)
T TIGR02857 382 NGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSG 461 (529)
T ss_pred CCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEE
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVI 470 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl 470 (478)
|||||++||||++++|+++|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|
T Consensus 462 Gq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 99999999999999999999999999999999999999999987889999999999999999999985
No 20
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.7e-84 Score=703.00 Aligned_cols=465 Identities=26% Similarity=0.378 Sum_probs=414.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556 4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL 83 (478)
Q Consensus 4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (478)
....+.++..++|.++|+++++.|+.+|++. ++|++++|+++|++.+++.+...+..++..++.++++++++++++|++
T Consensus 89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (592)
T PRK10790 89 FNRAAVGVVQQLRTDVMDAALRQPLSAFDTQ-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRM 167 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777889999999999999999999998 899999999999999999999999999999988888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLA 163 (478)
Q Consensus 84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
++++++++|+.++...++.++.++..++.++..++..+.+.|.++|++++|+|+.++.+.++|.+..++..+...+..+.
T Consensus 168 ~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (592)
T PRK10790 168 ALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRL 247 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888777777778888888888888899999999999999999999999999999999988888877766665
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 164 AGLG-FGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 164 ~~~~-~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
.... .....++..+..+++++++++ +..|.+++|.++++..+...+..|+..+...+..+.++..+++|+.++++.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 326 (592)
T PRK10790 248 DGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPR 326 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5443 233344444433333344444 57899999999999999999999999999999999999999999999987654
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+..... ..+...+.|+++||+|+|++ ++++|+|+||+|++||++||+|+||||||||+++|+|+|+|++|+|.+
T Consensus 327 ~~~~~~----~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 400 (592)
T PRK10790 327 QQYGND----DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 (592)
T ss_pred ccCCCC----ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 321111 11122357999999999974 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
||.|+++++.+++|++|+||||+|++|+||++|||++++ ++++++++++++.++++++++.+|+||||.+||+|.+|||
T Consensus 401 dg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG 479 (592)
T PRK10790 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479 (592)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 999999999999999999999999999999999999998 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
||||||+|||||+++|+++|||||||+||+++++.|.+.|++..+++|+|+||||++.++.||+|++|++|++++
T Consensus 480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~ 554 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVE 554 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999878899999999999999999999999999986
No 21
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.1e-83 Score=699.43 Aligned_cols=468 Identities=31% Similarity=0.436 Sum_probs=427.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048556 6 VTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTL 85 (478)
Q Consensus 6 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 85 (478)
+...++...+|.++|+|++++|+.+|++. ++|++++|+++|++.+.+.+...+..++..++.+++.++++++++|++++
T Consensus 82 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 160 (588)
T PRK13657 82 RLAHRRRLAVLTEYFERIIQLPLAWHSQR-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSL 160 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHCcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666799999999999999998 89999999999999999988888888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 86 VMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAG 165 (478)
Q Consensus 86 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (478)
++++++|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.|+.++.+.+++.+..++..+...+..+...
T Consensus 161 ~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (588)
T PRK13657 161 VLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWA 240 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888999999999999999999999999999999999999999999999999999998888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcc
Q 048556 166 LGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLID 245 (478)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 245 (478)
.......++..+..++++++|++++.+|.+|+|+++++..++..+..|+..+...+..+..+..+.+|+.++++.+++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 320 (588)
T PRK13657 241 LASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVR 320 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 77777778888888889999999999999999999999999999999999999999999999999999999987654322
Q ss_pred cCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCe
Q 048556 246 AYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV 325 (478)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 325 (478)
... +........+.|+++||+|+|+++ +++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|.+||.
T Consensus 321 ~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~ 397 (588)
T PRK13657 321 DPP-GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGT 397 (588)
T ss_pred CCC-CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 111 111111223469999999999742 47999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 326 NLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 326 ~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
++.+++.+++|++|+||||+|++|+||++|||++++|+.++++++++++.+++++++.++|+|+||.+|++|.+||||||
T Consensus 398 ~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~ 477 (588)
T PRK13657 398 DIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER 477 (588)
T ss_pred EhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
|||+||||++++|+++|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++
T Consensus 478 QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~ 549 (588)
T PRK13657 478 QRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVE 549 (588)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999998877899999999999999999999999999986
No 22
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.3e-83 Score=695.50 Aligned_cols=469 Identities=26% Similarity=0.395 Sum_probs=426.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHH
Q 048556 4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIA-LSKGWL 82 (478)
Q Consensus 4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 82 (478)
....+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.++..+...+..++..++.++++++++ ++++|.
T Consensus 60 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (569)
T PRK10789 60 LFGASYQLAVELREDFYRQLSRQHPEFYLRH-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQ 138 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3456788999999999999999999999998 89999999999999999888777777777766655555444 579999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|++++|+|+.++.+.++|.+..++..+..++..+
T Consensus 139 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 218 (569)
T PRK10789 139 LTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVAR 218 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888889999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
..+........+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+...+..+.++.++.+|+.++++.++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~ 298 (569)
T PRK10789 219 IDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAP 298 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77777777777777778888899999999999999999999999999999999999999999999999999999998654
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+.+... ...+...+.|+++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+|+|++|+|.+
T Consensus 299 ~~~~~~---~~~~~~~~~I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~ 374 (569)
T PRK10789 299 VVKDGS---EPVPEGRGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRF 374 (569)
T ss_pred cccCCC---CCCCCCCCcEEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE
Confidence 322111 1112223579999999999753 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
||+++.+++.+++|++++|+||+|++|++|++|||+++.|+.++++++++++.+++++++.++|+|++|.+|++|.+|||
T Consensus 375 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSg 454 (569)
T PRK10789 375 HDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSG 454 (569)
T ss_pred CCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
|||||++||||++++|+++|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++
T Consensus 455 Gq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~ 529 (569)
T PRK10789 455 GQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQ 529 (569)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999998878899999999999999999999999999986
No 23
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-84 Score=655.33 Aligned_cols=466 Identities=22% Similarity=0.337 Sum_probs=411.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 048556 7 TGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLV 86 (478)
Q Consensus 7 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li 86 (478)
..-++..++|.++|+++...++.-..+. ++||+++|+..|++.+++.|.+.+.+++..++...++.+.+-+.+|+.++.
T Consensus 85 AtfrvL~~lRv~~f~kl~p~sp~~~~r~-r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~All 163 (573)
T COG4987 85 ATFRVLSALRVRLFEKLEPLSPALLLRY-RSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALL 163 (573)
T ss_pred HHHHHHHHHHHHHHHhhccCChHHHHhc-ChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4567888999999999999999999998 999999999999999999999999999999888888877777889988876
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 87 MLSS-IPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAG 165 (478)
Q Consensus 87 ~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (478)
+.+. +...++++..+.++-++..+.....++.+.+.+.|.+.|..+++.||.++.+.+.+.+....+.+.+.+..++..
T Consensus 164 l~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~ 243 (573)
T COG4987 164 LGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTG 243 (573)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 344556777888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHccCCC
Q 048556 166 LGFGAFTFVAFSSYS-LAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQAS-PCISAFAAGQAAAYKLFEAIERKPL 243 (478)
Q Consensus 166 ~~~~~~~~~~~~~~~-~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~a~~ri~~~l~~~~~ 243 (478)
+......++..+..+ .++|.+ ..+-.|..+.-....+++..+..+.++..+. ..+....+...|+.|+.++.+++++
T Consensus 244 ~~~a~~~l~~g~~v~~~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e 322 (573)
T COG4987 244 LSDAILLLIAGLLVIGLLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPE 322 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcc
Confidence 998888888877776 445544 4445566664333333333344455565665 6778899999999999999988776
Q ss_pred cccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEEC
Q 048556 244 IDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 323 (478)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 323 (478)
...+. . ..+... ..++++||||+|+++ +.++|+|+||++++||++||+|+||||||||++++.|.|+|++|+|.+|
T Consensus 323 ~~~~~-~-~~~~~~-~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~ 398 (573)
T COG4987 323 VTFPD-E-QTATTG-QALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLN 398 (573)
T ss_pred cCCCc-c-ccCCcc-ceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeEC
Confidence 44321 1 111111 269999999999975 4689999999999999999999999999999999999999999999999
Q ss_pred CeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556 324 GVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG 403 (478)
Q Consensus 324 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 403 (478)
|.++..++.+++|+.+++++|.+++|++|+|||+.+++|++|||+++++++++|+++++++.|+||+|++||.|..||||
T Consensus 399 g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGG 478 (573)
T COG4987 399 GVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGG 478 (573)
T ss_pred CcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
|+||++|||+|++|+|++||||||.+||+.||+++++.+.+..++||+|+||||+..++.||||+|||+|+++|+
T Consensus 479 E~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~ 553 (573)
T COG4987 479 ERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEE 553 (573)
T ss_pred HHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeec
Confidence 999999999999999999999999999999999999999998899999999999999999999999999999874
No 24
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.3e-83 Score=694.55 Aligned_cols=474 Identities=38% Similarity=0.615 Sum_probs=431.5
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++...+|..+|++++++|..+|++. ++|++++|+++|++.+++++...+..++..++.++++++++++++|+
T Consensus 81 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (576)
T TIGR02204 81 LVTWLGERVVADIRRAVFAHLISLSPSFFDKN-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPK 159 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34567889999999999999999999999998 89999999999999999999998988888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++.+|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.++.++.+.++|++..++..+...+..+
T Consensus 160 l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (576)
T TIGR02204 160 LTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIR 239 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888889999999999999999999999999999999999999999999999999988888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
..........++..+..++++++|++++.+|.+|+|+++++..++..+..|+..+...+..+..+..+.+|+.++++.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~ 319 (576)
T TIGR02204 240 TRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEP 319 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 76666666666666777788889999999999999999999999999999999999999999999999999999997654
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+.+..........+..+.|+++||+|+|++++++++|+|+||+|+|||+++|+||||||||||+++|+|+|+|++|+|++
T Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i 399 (576)
T TIGR02204 320 DIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILL 399 (576)
T ss_pred cCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 32211101111111234699999999998533357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
||.++++++.+++|++++|+||+|++|+||++|||+++.|+.++++++++++.+++.++++.+|+|+||.+|++|.+|||
T Consensus 400 ~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSg 479 (576)
T TIGR02204 400 DGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSG 479 (576)
T ss_pred CCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
|||||++||||++++|+++|||||||+||+.+++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++
T Consensus 480 Gq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~ 554 (576)
T TIGR02204 480 GQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVA 554 (576)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999878899999999999999999999999999986
No 25
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.6e-82 Score=688.64 Aligned_cols=468 Identities=28% Similarity=0.400 Sum_probs=425.9
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048556 6 VTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTL 85 (478)
Q Consensus 6 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 85 (478)
+.+.++..++|.++|+|++++|+.+|+++ ++|++++|+++|++.+++++...+...+..++.+++++++++.++|.+++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~~~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 160 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQQR-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSI 160 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666799999999999999998 89999999999999999999988888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 86 VMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAG 165 (478)
Q Consensus 86 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (478)
++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.++.+.+++.+..+++.+...+..+..+
T Consensus 161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (585)
T TIGR01192 161 VLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWA 240 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888999999999999999999999999999999999999999999999999999998888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcc
Q 048556 166 LGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLID 245 (478)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 245 (478)
....+..++..+..++++++|++++.+|.+|+|+++++..++..+..|+..+...+..+..+..+.+|+.++++.+++..
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 320 (585)
T TIGR01192 241 LASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQRE 320 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 77777777778888888999999999999999999999989888889999999999999999999999999987654322
Q ss_pred cCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCe
Q 048556 246 AYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV 325 (478)
Q Consensus 246 ~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 325 (478)
... +....+...+.++++||+|+|+++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.
T Consensus 321 ~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 397 (585)
T TIGR01192 321 EPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI 397 (585)
T ss_pred CCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCE
Confidence 111 111111223569999999999742 46899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 326 NLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 326 ~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
++.+++.+++|++++||||++++|++|++||+.++.|++++++++++++.+++++++.++|+|++|.+|++|.+||||||
T Consensus 398 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~ 477 (585)
T TIGR01192 398 DINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER 477 (585)
T ss_pred EhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence 99999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
||++|||||+++|+++|||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++
T Consensus 478 qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~ 549 (585)
T TIGR01192 478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIE 549 (585)
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999998878899999999999999999999999999986
No 26
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3e-81 Score=736.05 Aligned_cols=470 Identities=22% Similarity=0.305 Sum_probs=409.6
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+....+.+...++|.++|+++++.|+.||++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|+
T Consensus 1028 ~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~ 1106 (1522)
T TIGR00957 1028 AVSIGGIQASRVLHQDLLHNKLRSPMSFFERT-PSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPI 1106 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhHhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566889999999999999999999999997 89999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++++++++++.+++.+..++..+......+.+.+.+.|++.|+++||+|++++.+.+++.+..+...+..+....
T Consensus 1107 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~ 1186 (1522)
T TIGR00957 1107 AAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIV 1186 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666666666777777777777777888889999999999999999999999999999988888777766555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMIL-EKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK 241 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~-~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 241 (478)
...+......++.. +++++++++.+. .|.++.|.+.+++.++..+..|+..+...+..+.++..|++|+.++++.+
T Consensus 1187 ~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~ 1263 (1522)
T TIGR00957 1187 ANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETE 1263 (1522)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44444444333322 233444555554 57899999999999999999999999999999999999999999999766
Q ss_pred CCcccCCCCCCcc--CCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccE
Q 048556 242 PLIDAYDSNGVKL--DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319 (478)
Q Consensus 242 ~~~~~~~~~~~~~--~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 319 (478)
++.+...++..++ .+..+.|+|+||+|+|+++ .+++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+
T Consensus 1264 ~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~ 1342 (1522)
T TIGR00957 1264 KEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGE 1342 (1522)
T ss_pred CCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCe
Confidence 5432111111111 1234789999999999753 247999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 048556 320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ 399 (478)
Q Consensus 320 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~ 399 (478)
|++||+|+++++.+++|+++++|||+|.||+|||||||.... +++++++++|++.+++++++.++|+||||.+||+|.+
T Consensus 1343 I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1421 (1522)
T TIGR00957 1343 IIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGEN 1421 (1522)
T ss_pred EEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCc
Confidence 999999999999999999999999999999999999998443 5899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
||||||||+||||||+++|+|||||||||+||++|++.|.+.|++..+++|+|+||||++++.+||||+||++|+|+|.
T Consensus 1422 LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957 1422 LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500 (1522)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999998889999999999999999999999999999973
No 27
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.2e-80 Score=669.48 Aligned_cols=463 Identities=23% Similarity=0.316 Sum_probs=413.9
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGE-KVGKFIQLLATFIGGFVIALSKGW 81 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 81 (478)
+..+.+.++..++|.++|+|++++|+. ..++..+++.+|++.+++++.. .+..++..++.++. ++++++++|
T Consensus 69 ~~~~~~~~~~~~lr~~~~~~ll~~~~~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 141 (544)
T TIGR01842 69 VLVRIGEKLDGALNQPIFAASFSATLR------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIY-LLVCFLLHP 141 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccc------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HHHHHHHhh
Confidence 456678899999999999999999983 2356688899999999998877 45555555555544 456788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG 161 (478)
Q Consensus 82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
++++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.++|++..+++.+...+..
T Consensus 142 ~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 221 (544)
T TIGR01842 142 WIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAAS 221 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888887777777888888888999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556 162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 241 (478)
+..+.......++..+..++++++|++++.+|.+|+|+++++..++..+..|+..+...+..++++..+.+|+.++++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~ 301 (544)
T TIGR01842 222 DRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANY 301 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77777777777777778888889999999999999999999999999999999999999999999999999999999765
Q ss_pred CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556 242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 321 (478)
++.... ...+...+.++++||+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 302 ~~~~~~----~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 376 (544)
T TIGR01842 302 PSRDPA----MPLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376 (544)
T ss_pred ccccCC----CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 432211 1112223569999999999743 35799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556 322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401 (478)
Q Consensus 322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 401 (478)
+||+++.+++.+++|+.++||||+|++|++|++||+.++.+++++++++++++.++++++++++|+|+||.+|++|.+||
T Consensus 377 ~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LS 456 (544)
T TIGR01842 377 LDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLS 456 (544)
T ss_pred ECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCC
Confidence 99999999999999999999999999999999999998887789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
||||||++||||++++|+++|||||||+||+++++.+.+.|++.. +++|+|+||||++.++.||+|++|++|++++
T Consensus 457 gGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~ 533 (544)
T TIGR01842 457 GGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIAR 533 (544)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999875 5799999999999999999999999999986
No 28
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-81 Score=633.95 Aligned_cols=469 Identities=29% Similarity=0.421 Sum_probs=412.0
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIA-LSKGW 81 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 81 (478)
.+.++.+++..+.-.++|++++++++++|.++ .+|++.+.+..-...+..++...+..++..++.+......+ .-.++
T Consensus 97 vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga 175 (591)
T KOG0057|consen 97 VFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSR-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGA 175 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCC-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 45678889999999999999999999999999 89999999999999998888887777777766655544333 34677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG 161 (478)
Q Consensus 82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
..+++.++....+............+..++...+.......+.|++.+.++||.||.|+++.++|+....++.+...+..
T Consensus 176 ~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~ 255 (591)
T KOG0057|consen 176 AFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYS 255 (591)
T ss_pred HHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHH
Confidence 77777777666666665555666666777778888888999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556 162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 241 (478)
...++....-.++.......+.++|..-+.++.+|+|+++.+..++.++..|+..+...+..+.++..-+.-++.+.+..
T Consensus 256 ~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~ 335 (591)
T KOG0057|consen 256 SSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVD 335 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Confidence 77777777767777677777777787778899999999999999999999999999999999888888777776654432
Q ss_pred CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556 242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 321 (478)
....+ ...+....++.|+|+||+|.|++ ++++|+++||+|++||+|||||+|||||||++|+|.++++ ++|+|+
T Consensus 336 ~~i~~---~~~~i~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~ 409 (591)
T KOG0057|consen 336 EDIQE---AALPIELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSIL 409 (591)
T ss_pred hhhhh---ccCCcccCCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEE
Confidence 21111 11222334567999999999974 4679999999999999999999999999999999999999 899999
Q ss_pred ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556 322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401 (478)
Q Consensus 322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 401 (478)
+||+++++++++++|+.|||||||..||++||.+||.+|+|.+++||+.++|+.+++||.+.++|+||+|.+||+|..||
T Consensus 410 IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LS 489 (591)
T KOG0057|consen 410 IDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLS 489 (591)
T ss_pred ECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
||||||++||||+++||||+++|||||+||.+||+.+++.+.+...+||+|+|.||++++++||+|+++++|++.|.
T Consensus 490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEY 566 (591)
T ss_pred cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEe
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999863
No 29
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-83 Score=637.02 Aligned_cols=471 Identities=30% Similarity=0.430 Sum_probs=405.5
Q ss_pred eehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 2 ACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQ--DSIGEKVGKFIQLLATFIGGFVIALSK 79 (478)
Q Consensus 2 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (478)
++|-.+.+-..+++-..+|+|+.++++.|+-++ ++|+++.-+...+..+. +++...+.+.+.++...++.+ .+..
T Consensus 281 fLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~r-rtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~vYF--~~~F 357 (790)
T KOG0056|consen 281 FLWIPVQQYTTREIETELFRHLHNLSLRWHLNR-RTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYF--FIKF 357 (790)
T ss_pred eEEEEhhHhHHHHHHHHHHHHHHhhceeeeecc-cccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhhhh--hhhH
Confidence 466677778888999999999999999999998 99999887775554433 333333333333333333222 2346
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 048556 80 GWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVH 159 (478)
Q Consensus 80 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 159 (478)
+|+.+++++++..++.........-..+..++...++.+......|++-+++++|-||.|+.+.++|.+...++.+...+
T Consensus 358 n~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~k 437 (790)
T KOG0056|consen 358 NIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWK 437 (790)
T ss_pred hHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHH
Confidence 89999988887777665544444444556666666667777788999999999999999999999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 048556 160 EGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIE 239 (478)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~ 239 (478)
......+....-..+..+..++.-.+++|+|..+.+++|+.+.+..|..++.+|+..++..+..+++....+++++|+++
T Consensus 438 s~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllk 517 (790)
T KOG0056|consen 438 SLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLK 517 (790)
T ss_pred HHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 65555555555555555555555556677888999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccE
Q 048556 240 RKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319 (478)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 319 (478)
++++..+.+ +..+.....|.|+|+||+|.|+ +++|+|+|+||+++||+.+|+|||||+||||++++|.++++.++|.
T Consensus 518 ee~eVvd~P-~a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGs 594 (790)
T KOG0056|consen 518 EEPEVVDLP-GAPPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGS 594 (790)
T ss_pred cCchhhcCC-CCCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCce
Confidence 888765543 3445555678999999999996 4579999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 048556 320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ 399 (478)
Q Consensus 320 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~ 399 (478)
|.+||+|++.+...++|++||+||||..||++||..||.+++|.+++||+.+|++.+++||.|.++|+||+|.+||+|-.
T Consensus 595 I~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLk 674 (790)
T KOG0056|consen 595 ITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLK 674 (790)
T ss_pred EEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
||||||||+||||+++++|.+++|||+||+||..+|+.|..++.+++.++|.|+|+||++++-+||.|+|+++|+|+|+
T Consensus 675 LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvEr 753 (790)
T KOG0056|consen 675 LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVER 753 (790)
T ss_pred cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999985
No 30
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.3e-79 Score=721.85 Aligned_cols=470 Identities=21% Similarity=0.289 Sum_probs=376.1
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.+...++|.++|++++++|+.||+++ ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.
T Consensus 976 ~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~-~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~ 1054 (1622)
T PLN03130 976 WLIMSSLYAAKRLHDAMLGSILRAPMSFFHTN-PLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTI 1054 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999999998 99999999999999999999999888998888888888877777774
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
..++++.+..+++.+..++.+..++..+......+...+.+.|+++|+++||+|+.++++.+++.+..+...+.......
T Consensus 1055 ~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~ 1134 (1622)
T PLN03130 1055 SLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMS 1134 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333332222333334445555666666677778899999999999999999999887766665555444333222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKG-YK-----GGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFE 236 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~-ls-----~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~ 236 (478)
...+......+ +..+++++.+.+.+..+. .+ .+.+..++.++..+..++..+...+..+.....|++|+.+
T Consensus 1135 ~~~wl~~~l~~---~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e 1211 (1622)
T PLN03130 1135 SNRWLAIRLET---LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGT 1211 (1622)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11121111222 222223333444444432 11 1222223334455556677777778888999999999999
Q ss_pred HHccCCCcccCCCCCCcc--CCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 237 AIERKPLIDAYDSNGVKL--DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 237 ~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
+++.+++.+...++..++ .+..+.|+|+||+|+|+++ .+++|+|+||+|+|||++|||||||||||||+++|+|+|+
T Consensus 1212 ~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1212 YIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred HhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 998765532211111111 1234689999999999643 3579999999999999999999999999999999999999
Q ss_pred CCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcccccc
Q 048556 315 PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVG 394 (478)
Q Consensus 315 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~ 394 (478)
|++|+|++||+|+++++.+++|++|++|||+|.||+|||||||.++. +++++++++|++.++++++++++|+||||.+|
T Consensus 1291 p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vg 1369 (1622)
T PLN03130 1291 LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVS 1369 (1622)
T ss_pred CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccCcccc
Confidence 99999999999999999999999999999999999999999999987 47999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 048556 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGK 474 (478)
Q Consensus 395 ~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~ 474 (478)
|+|.+|||||||||||||||+++|+|||||||||+||.+|++.|.+.|++..+++|+|+||||++++++||||+||++|+
T Consensus 1370 e~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~ 1449 (1622)
T PLN03130 1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGR 1449 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred EeeC
Q 048556 475 LVEK 478 (478)
Q Consensus 475 i~~~ 478 (478)
|+|.
T Consensus 1450 IvE~ 1453 (1622)
T PLN03130 1450 VVEF 1453 (1622)
T ss_pred EEEe
Confidence 9973
No 31
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.6e-79 Score=720.12 Aligned_cols=470 Identities=21% Similarity=0.286 Sum_probs=402.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048556 6 VTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTL 85 (478)
Q Consensus 6 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 85 (478)
..+.+...++|.++|+++++.|+.||++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|.+.+
T Consensus 1024 ~~~~~~~~~l~~~l~~~ll~~p~~ffd~~-~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~ 1102 (1560)
T PTZ00243 1024 EAMRRGSRNMHRDLLRSVSRGTMSFFDTT-PLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLV 1102 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhhccCC-CccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778999999999999999999998 89999999999999999999999999999999988888888888886555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 86 VMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAG 165 (478)
Q Consensus 86 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (478)
+++.+..+++.+..++.+..++..+......+...+.+.|+++|+++||+|+.++.+.+++.+..+...+..+.......
T Consensus 1103 ~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~ 1182 (1560)
T PTZ00243 1103 ALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANR 1182 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444434445556666777777777788888999999999999999999999999999999988888877766655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 048556 166 LGFGAFTFVAFSSYSLAIWFGGKMI--LEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPL 243 (478)
Q Consensus 166 ~~~~~~~~~~~~~~~~~l~~g~~lv--~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 243 (478)
+......++..+..+++.+++.+.. ..+.+++|.+..++.++..+..++..+...+..+..++.+++|+.++++..++
T Consensus 1183 w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~ 1262 (1560)
T PTZ00243 1183 WLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPH 1262 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 5555556655555444444444433 34557899887777787888889999999999999999999999999964332
Q ss_pred cccCC-------------------------CCCC----ccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEE
Q 048556 244 IDAYD-------------------------SNGV----KLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAAL 294 (478)
Q Consensus 244 ~~~~~-------------------------~~~~----~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~i 294 (478)
++... .... +.+...+.|+|+||+|+|+++ .+++|+|+||+|++||++||
T Consensus 1263 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaI 1341 (1560)
T PTZ00243 1263 EDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGI 1341 (1560)
T ss_pred cccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEE
Confidence 21000 0000 011124679999999999753 34699999999999999999
Q ss_pred EcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHH
Q 048556 295 VGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAE 374 (478)
Q Consensus 295 vG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~ 374 (478)
||+||||||||+++|+|+|+|++|+|++||+|+.+++.+++|++|+||||+|.||+|||||||..+. +++++++++|++
T Consensus 1342 VGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-~~sdeeI~~Al~ 1420 (1560)
T PTZ00243 1342 VGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-EASSAEVWAALE 1420 (1560)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-CCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998754 689999999999
Q ss_pred HhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 048556 375 LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD-PRILLLDEATSALDAESERVVQEALDKIMINRTTVI 453 (478)
Q Consensus 375 ~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~-~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~ 453 (478)
++++++++..+|+||||.+||+|.+|||||||||||||||+++ |+|||||||||+||+++++.|.+.|++..+++|+|+
T Consensus 1421 ~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~ 1500 (1560)
T PTZ00243 1421 LVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVIT 1500 (1560)
T ss_pred HCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 9999999999999999999999999999999999999999996 899999999999999999999999999888999999
Q ss_pred EecCchhhhhcCEEEEEeCCEEeeC
Q 048556 454 VAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 454 itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
||||++++++||+|+||++|+|+|.
T Consensus 1501 IAHRl~ti~~~DrIlVLd~G~VvE~ 1525 (1560)
T PTZ00243 1501 IAHRLHTVAQYDKIIVMDHGAVAEM 1525 (1560)
T ss_pred EeccHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999873
No 32
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=9.5e-79 Score=708.69 Aligned_cols=469 Identities=35% Similarity=0.587 Sum_probs=426.5
Q ss_pred eehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048556 2 ACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGW 81 (478)
Q Consensus 2 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (478)
+|+.+.+.++..++|.++|++++++|..||++. ++|++.+++++|++.++..+...+..++..++.+++.++++++++|
T Consensus 119 ~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw 197 (1466)
T PTZ00265 119 FCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNA 197 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 478899999999999999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG 161 (478)
Q Consensus 82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
.+++++++++|+++++..++.+++++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..+.+.+...+..
T Consensus 198 ~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~ 277 (1466)
T PTZ00265 198 RLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKAN 277 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888888999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEK--------GYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYK 233 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g--------~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~r 233 (478)
...++..++..++..+.+++++|+|++++.+| .+++|++++++......+.++..+.+.+..++.+.+|++|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~r 357 (1466)
T PTZ00265 278 FMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNS 357 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888999999999999986 5889998887766666566667777788999999999999
Q ss_pred HHHHHccCCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 234 LFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 234 i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
++++++.+++.+... ++...+.. ..|+++||+|+|+++++.++|+|+||+|++||++||+||||||||||+++|+|+|
T Consensus 358 i~~ii~~~~~~~~~~-~~~~~~~~-~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~ 435 (1466)
T PTZ00265 358 LYEIINRKPLVENND-DGKKLKDI-KKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY 435 (1466)
T ss_pred HHHHHcCCCCCCCCC-CCccCCCC-CcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 999998766533211 11111222 3799999999998543457999999999999999999999999999999999999
Q ss_pred CCCccEEEE-CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCC------------------------------
Q 048556 314 DPQAGEVLI-DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD------------------------------ 362 (478)
Q Consensus 314 ~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~------------------------------ 362 (478)
+|++|+|++ ||+++.+++.+.+|++|+||||+|.+|++||+|||.+|.+
T Consensus 436 ~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1466)
T PTZ00265 436 DPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCR 515 (1466)
T ss_pred cCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccccccc
Confidence 999999999 5799999999999999999999999999999999999741
Q ss_pred ---------------------------CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 363 ---------------------------GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 363 ---------------------------~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
++++++++++++.+++++++..+|+||||.+|++|.+||||||||++|||||+
T Consensus 516 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll 595 (1466)
T PTZ00265 516 AKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAII 595 (1466)
T ss_pred ccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHh
Confidence 24678999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQG 473 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G 473 (478)
++|++||||||||+||+.+++.+.+.|+++. +++|+|+||||+++++.||+|++|++|
T Consensus 596 ~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 596 RNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999885 479999999999999999999999997
No 33
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.1e-79 Score=715.62 Aligned_cols=469 Identities=20% Similarity=0.292 Sum_probs=376.6
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+....+.+...++|.++++++++.|+.||++. ++|++++|+++|++.+++.+...+..++..++.+++.+++++.+++.
T Consensus 973 ~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~-~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~ 1051 (1495)
T PLN03232 973 WLISSSLHAAKRLHDAMLNSILRAPMLFFHTN-PTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTI 1051 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcC-CchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999998 89999999999999999999998888888888887777777766664
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIV-LTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG 161 (478)
Q Consensus 83 l~li~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
..+++ +++++++ ++..++.+..++..+......+...+.+.|+++|+++||+|+.++++.+++.+..+...+......
T Consensus 1052 ~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~ 1130 (1495)
T PLN03232 1052 SLWAI-MPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANT 1130 (1495)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333 2232222 232333344455666777788889999999999999999999998877766665555444332221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC----CHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILE-KGY----KGGDVI-NVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLF 235 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~-g~l----s~G~l~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~ 235 (478)
....+.... +..+..+++++.+.+.+.. +.+ ..+..+ .++.++..+..++..+...+..+..+..+++|+.
T Consensus 1131 ~~~~wl~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~ 1207 (1495)
T PLN03232 1131 SSNRWLTIR---LETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVG 1207 (1495)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1122222333334444443 322 112222 2344555566688888888999999999999999
Q ss_pred HHHccCCCcccCCCCCCcc--CCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 236 EAIERKPLIDAYDSNGVKL--DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 236 ~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
++++.+++.+...++..++ .+..+.|+|+||+|+|+++ .+++|+|+||+|+|||++|||||||||||||+++|+|+|
T Consensus 1208 e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232 1208 NYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred HHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 9998765533211111111 1234679999999999643 357999999999999999999999999999999999999
Q ss_pred CCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccc
Q 048556 314 DPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMV 393 (478)
Q Consensus 314 ~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~ 393 (478)
+|++|+|.+||+|+++++.+++|++++||||+|.+|+|||||||.++. +++++++++|++.++++++++++|+||||.+
T Consensus 1287 ~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v 1365 (1495)
T PLN03232 1287 ELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDAEV 1365 (1495)
T ss_pred cCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCcee
Confidence 999999999999999999999999999999999999999999999986 5899999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473 (478)
Q Consensus 394 ~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G 473 (478)
||+|.+|||||||||||||||+++|+|||||||||+||++|++.|.+.|++..+++|+|+||||++++++||+|+||++|
T Consensus 1366 ~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G 1445 (1495)
T PLN03232 1366 SEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSG 1445 (1495)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred EEeeC
Q 048556 474 KLVEK 478 (478)
Q Consensus 474 ~i~~~ 478 (478)
+|+|.
T Consensus 1446 ~ivE~ 1450 (1495)
T PLN03232 1446 QVLEY 1450 (1495)
T ss_pred EEEEE
Confidence 99973
No 34
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=4.8e-78 Score=650.09 Aligned_cols=462 Identities=20% Similarity=0.165 Sum_probs=395.6
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+....+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++.. ++.++..++.++++++++++++|.
T Consensus 76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 153 (555)
T TIGR01194 76 FPAYAGMHIIANLRIALCEKILGAPIEEIDRR-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVP 153 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhc-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45678899999999999999999999999998 8999999999999999998864 777788888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHH--HHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEK--QAVAKYNESLTKAYKSGVHE 160 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~~~~~~~~~~ 160 (478)
+++++++.+|+.+++..++.++.++...+.++..++.++.+.|.+.|++++|+|+.++ ...+++.+..+++.+...+.
T Consensus 154 L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
T TIGR01194 154 MFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIE 233 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999988888888877777788888888889999999999999999999999999954 55778888888887776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 048556 161 GLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240 (478)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~ 240 (478)
.+..........++..+...+.+++|++. |.+|+|+++++..+...+..|+..+.+.+..++++.++++|+.++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~ 310 (555)
T TIGR01194 234 ILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGER 310 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55544444444444444344444555443 789999999999999999999999999999999999999999999753
Q ss_pred CCCccc----CCCCCC---ccCCCCccEEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhc
Q 048556 241 KPLIDA----YDSNGV---KLDDIRGDIELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 241 ~~~~~~----~~~~~~---~~~~~~~~i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g 311 (478)
+++++. +..+.. ++....+.|+++||+|+|++.+ .+++|+|+||++++||+++|+||||||||||+++|+|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g 390 (555)
T TIGR01194 311 FNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390 (555)
T ss_pred hccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 211100 000000 1112235799999999997531 2369999999999999999999999999999999999
Q ss_pred cCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc
Q 048556 312 FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT 391 (478)
Q Consensus 312 ~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t 391 (478)
+|+|++|+|.+||.++.+++.+++|++++||+|++++|++|+++|+ .+++++++++++++.++++++++.+|+||||
T Consensus 391 ~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 467 (555)
T TIGR01194 391 LYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFST 467 (555)
T ss_pred CCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCC
Confidence 9999999999999999999999999999999999999999999995 4667899999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hh-cCCCeEEEEecCchhhhhcCEEEE
Q 048556 392 MVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD-KI-MINRTTVIVAHRLSTVRNADLIAV 469 (478)
Q Consensus 392 ~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~-~~-~~~~t~i~itH~~~~~~~~d~i~v 469 (478)
. .+||||||||++||||++++|+++|||||||+||+++++.+.+.+. .. .+++|+|+||||+++++.||+|++
T Consensus 468 ~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~ 542 (555)
T TIGR01194 468 T-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIK 542 (555)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEE
Confidence 5 8899999999999999999999999999999999999999998764 34 357999999999999999999999
Q ss_pred EeCCEEee
Q 048556 470 IHQGKLVE 477 (478)
Q Consensus 470 l~~G~i~~ 477 (478)
|++|+++|
T Consensus 543 l~~G~i~~ 550 (555)
T TIGR01194 543 LAAGCIVK 550 (555)
T ss_pred EECCEEEE
Confidence 99999987
No 35
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-78 Score=595.10 Aligned_cols=472 Identities=31% Similarity=0.425 Sum_probs=416.8
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGF-VIALSKGW 81 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 81 (478)
++...++.....+--..|.|+.++++.|+.++ ++|.+..-+....+.++......+...+..++-+.... +++..++|
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 56778888999999999999999999999998 89998877777676776666666666655555444433 44556899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG 161 (478)
Q Consensus 82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
+.+++.++++.++.++......-.....++..++.++.+....|++-+.+++|.||.|+.+..+|.+..+.+.+...+..
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 99999888888777665554444455666777788888999999999999999999999999999999999999888876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556 162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 241 (478)
....+....-..+......+....++..+..|.+|+|+++....+..+...|+..++..+..+.+++...++++++++.+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~ 243 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence 66666666666666666677777888889999999999999999999999999999999999999999999999999877
Q ss_pred CCcccCCCCCCccC-CCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556 242 PLIDAYDSNGVKLD-DIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320 (478)
Q Consensus 242 ~~~~~~~~~~~~~~-~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 320 (478)
.+..+.+ +.++.. ...+.+.|+||+|.|.+ .+|+|+++||++++|+++|+|||||+||||++++|.++|++++|.|
T Consensus 244 ~~v~d~p-da~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I 320 (497)
T COG5265 244 AEVSDAP-DAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320 (497)
T ss_pred hhhccCC-CCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence 6554432 233333 34578999999999974 4799999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCC
Q 048556 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQL 400 (478)
Q Consensus 321 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~L 400 (478)
.+||+|+.+...+++|+.||.||||..||++|+..|+.+|+|+++++|++.|++.+.++++|+.+|+||+|.|||+|-.|
T Consensus 321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglkl 400 (497)
T COG5265 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL 400 (497)
T ss_pred EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
|||||||+||||+++++|+|++|||+||+||..||+.|...|++...++|.++|+||++++-+||.|+||++|+|+|+
T Consensus 401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985
No 36
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.7e-76 Score=692.31 Aligned_cols=467 Identities=19% Similarity=0.264 Sum_probs=388.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556 4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL 83 (478)
Q Consensus 4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (478)
+.+.+.+...++|.++++++++.|+.||++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|++
T Consensus 949 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l 1027 (1490)
T TIGR01271 949 LVHTLLTVSKRLHEQMLHSVLQAPMAVLNTM-KAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYI 1027 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778999999999999999999999997 999999999999999999999999999999999998888888899987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLA 163 (478)
Q Consensus 84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
++++++++++++++..++.+..++..+......+.+.+.+.|++.|+.+||+|++++.+.+++.+..+...+..+.....
T Consensus 1028 ~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1107 (1490)
T TIGR01271 1028 FIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLST 1107 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655555555555566666667777777888889999999999999999999999999999998887655444333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 048556 164 AGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPL 243 (478)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 243 (478)
..+......++..+..+++.++ .+.....+.|.+..++.++..+..++..+...+..+...+.|++|+.++.+.+++
T Consensus 1108 ~~wl~~~~~~i~~~~~~~~~~l---~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e 1184 (1490)
T TIGR01271 1108 LRWFQMRIDIIFVFFFIAVTFI---AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQE 1184 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3333333333222222111111 1112234455555555566666778888888889999999999999999976554
Q ss_pred cccCCCC--------------CCcc--CCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHH
Q 048556 244 IDAYDSN--------------GVKL--DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVIS 307 (478)
Q Consensus 244 ~~~~~~~--------------~~~~--~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ 307 (478)
....... ..++ .+..+.|+|+||+|+|+++ .+++|+|+||+|++||++||||+||||||||++
T Consensus 1185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~ 1263 (1490)
T TIGR01271 1185 EPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLS 1263 (1490)
T ss_pred cccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 3211100 0001 1234689999999999753 468999999999999999999999999999999
Q ss_pred HHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCC
Q 048556 308 LIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQ 387 (478)
Q Consensus 308 ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~ 387 (478)
+|+|+++ ++|+|++||+|+.+++.+++|++++||||+|++|+|||||||.... .++|+++++|++.+++++++..+|+
T Consensus 1264 lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL~~~~L~~~i~~lp~ 1341 (1490)
T TIGR01271 1264 ALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVAEEVGLKSVIEQFPD 1341 (1490)
T ss_pred HHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHHHHCCCHHHHHhCcc
Confidence 9999997 7899999999999999999999999999999999999999998654 5789999999999999999999999
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEE
Q 048556 388 GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLI 467 (478)
Q Consensus 388 g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i 467 (478)
||||.++|+|.+|||||||||||||||+++|+|||||||||+||++|++.|.+.|++..+++|+|+||||++++.+||+|
T Consensus 1342 GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrI 1421 (1490)
T TIGR01271 1342 KLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQF 1421 (1490)
T ss_pred ccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred EEEeCCEEee
Q 048556 468 AVIHQGKLVE 477 (478)
Q Consensus 468 ~vl~~G~i~~ 477 (478)
+||++|+|+|
T Consensus 1422 lvL~~G~ivE 1431 (1490)
T TIGR01271 1422 LVIEGSSVKQ 1431 (1490)
T ss_pred EEEECCEEEE
Confidence 9999999987
No 37
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-76 Score=666.34 Aligned_cols=471 Identities=23% Similarity=0.331 Sum_probs=415.2
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
.+...+.+....++..+++++++.|++||+.. ++|.|+||++.|++.+++.+...+..++..++.++++++++.+..|+
T Consensus 881 ~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtT-P~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~ 959 (1381)
T KOG0054|consen 881 LFAKGGLKASRKLHDKLLNSILRAPMSFFDTT-PTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPW 959 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhcCCC-CccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 35668899999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
.+++++.+.++++.+..++.+..++..+-....++...+++.|++.|+.+||+|+.++++.+++.+..+...+..+-...
T Consensus 960 fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~ 1039 (1381)
T KOG0054|consen 960 FLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSIS 1039 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHH
Confidence 98888888888888888888889999999999999999999999999999999999999999999988887776655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
...+...-..++..+...++..+.... ..+.++.|.+-..+.|+..+...++.+......+...+.|++|+.++.+.++
T Consensus 1040 a~RWla~Rle~ig~~~v~~~al~~vl~-~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~ 1118 (1381)
T KOG0054|consen 1040 ANRWLAVRLELLGNLVVLIAALFAVLL-PSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPS 1118 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCC
Confidence 444444445555444333332222221 1222667877777888888888899999999999999999999999998665
Q ss_pred Cccc-CCCC-CCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556 243 LIDA-YDSN-GVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320 (478)
Q Consensus 243 ~~~~-~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 320 (478)
|.+. .+.+ .++..+..|+|+|+|++.+|.++ .++||+||||+|+|||+|||||++|||||||.++|.|+.+|.+|+|
T Consensus 1119 E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I 1197 (1381)
T KOG0054|consen 1119 EAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEI 1197 (1381)
T ss_pred CCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeE
Confidence 5111 1111 12223456899999999999753 4689999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCC
Q 048556 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQL 400 (478)
Q Consensus 321 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~L 400 (478)
.|||.|+.+++.+++|++++++||||.||+||+|.||.-.+ .++|+++|+|++.+++++.++++|.|+|+.+.|+|.|+
T Consensus 1198 ~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~ 1276 (1381)
T KOG0054|consen 1198 LIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENF 1276 (1381)
T ss_pred EEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc-ccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccC
Confidence 99999999999999999999999999999999999997544 58999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
|-||||.+||||||+|+++||+|||+|+++|++|...|.+.|++..++||||.|+||++++.+||||+|||+|+++|
T Consensus 1277 SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~E 1353 (1381)
T KOG0054|consen 1277 SVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVE 1353 (1381)
T ss_pred ChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998
No 38
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.5e-75 Score=588.57 Aligned_cols=460 Identities=23% Similarity=0.320 Sum_probs=413.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556 5 IVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGE-KVGKFIQLLATFIGGFVIALSKGWLL 83 (478)
Q Consensus 5 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (478)
.++|.++...+...+|...++.+.. .+ .+|+=.+-+ +|.++++.|++. ....++...++++... ++|..+|++
T Consensus 88 ~Rig~~lD~~L~~~v~~a~~~~~l~---~~-~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~-v~fl~Hp~l 161 (580)
T COG4618 88 VRIGERLDRQLNGPVFAASFSAPLL---RR-GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLA-VIFLFHPWL 161 (580)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHh---hc-CCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHH-HHHHHHHHH
Confidence 4677888888888888888766664 23 456555555 589999999987 4556666677776554 566778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLA 163 (478)
Q Consensus 84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
+++.++...+++.+..+-....++..++..+.....+....-+.++.++|+++|......++|.+.+.++...+.+..-.
T Consensus 162 G~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~ 241 (580)
T COG4618 162 GLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDR 241 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99988888888888777677778888888888888889999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 048556 164 AGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPL 243 (478)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 243 (478)
.+....++..+-.+.+.+++..|+|+++.|++|.|.+++-..+......|+......|.++..+..|++|+.+++...|.
T Consensus 242 ~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~ 321 (580)
T COG4618 242 NGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPA 321 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 88888999999999999999999999999999999999988888888899999999999999999999999999987665
Q ss_pred cccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEEC
Q 048556 244 IDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 323 (478)
Q Consensus 244 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 323 (478)
... ..+.+..++.+.++++++.=|+. ++|+++++||++++||.+||+||||||||||.|+|.|.++|.+|.|++|
T Consensus 322 ~~~----~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLD 396 (580)
T COG4618 322 AAE----RMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD 396 (580)
T ss_pred ccC----CCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEec
Confidence 332 23445566889999999977654 5799999999999999999999999999999999999999999999999
Q ss_pred CeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556 324 GVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG 403 (478)
Q Consensus 324 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 403 (478)
|-|+.++|.+++-++|||.||+..||+|||+|||+-..++.+++++.+|++.+++||.|.++|+||||.+|+.|..||||
T Consensus 397 ga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgG 476 (580)
T COG4618 397 GADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGG 476 (580)
T ss_pred chhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCch
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 048556 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKL 475 (478)
Q Consensus 404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i 475 (478)
|||||+|||||+.||.+++||||-|+||.+.|+.+.++|.+.+ +++|+|+||||++.+..+|+|++|++|++
T Consensus 477 QRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 477 QRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549 (580)
T ss_pred HHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChH
Confidence 9999999999999999999999999999999999999998886 57999999999999999999999999986
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1e-72 Score=663.03 Aligned_cols=451 Identities=21% Similarity=0.271 Sum_probs=374.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 048556 5 IVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLT 84 (478)
Q Consensus 5 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (478)
.+.+.++...++..+|+|+++++..++++. ++|++++++++|++.+++++ ..+..++..++.+++++++++. .++
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~-~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~---~lg 440 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNF-ASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQ---QLG 440 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHh
Confidence 467788888888899999999999999987 89999999999999999987 4555555566555554444332 222
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 85 LVMLS---SIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG 161 (478)
Q Consensus 85 li~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
+..++ ++++++.+..++.+++++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+..
T Consensus 441 ~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~ 520 (1495)
T PLN03232 441 VASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQ 520 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 222222345566788889999999999999999999999999999999999999999998888777666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556 162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 241 (478)
...+......... ...+.++++|++++.+|.+|+|.+++++.++..+..|+..++..+..+.++..+.+|+.++++.+
T Consensus 521 ~~~~~~~~~~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~ 598 (1495)
T PLN03232 521 LLSAFNSFILNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE 598 (1495)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 5444433222111 12233467899999999999999999999999999999999999999999999999999999765
Q ss_pred CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556 242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 321 (478)
++..... .......+.|+++|++|+|++++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.
T Consensus 599 ~~~~~~~---~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~ 675 (1495)
T PLN03232 599 ERILAQN---PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV 675 (1495)
T ss_pred ccccccc---CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE
Confidence 4321111 1111122469999999999754346899999999999999999999999999999999999999998763
Q ss_pred ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556 322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401 (478)
Q Consensus 322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 401 (478)
.+|++|+||||+|++|+|||||||++|.| .++++++++++.++++++++.+|+|++|.+||+|.+||
T Consensus 676 ------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LS 742 (1495)
T PLN03232 676 ------------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNIS 742 (1495)
T ss_pred ------------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccC
Confidence 35789999999999999999999999986 68899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA-LDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
|||||||+||||++++|+|+||||||||||+++++++++. ++...+++|+|+||||++.++.||+|++|++|+++++
T Consensus 743 GGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~ 820 (1495)
T PLN03232 743 GGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEE 820 (1495)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999988765 5655678999999999999999999999999999863
No 40
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2e-72 Score=605.98 Aligned_cols=454 Identities=18% Similarity=0.201 Sum_probs=364.6
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|.++|++++++|+.+|+++ ++|++++|+++|++.+..++. .++.++..++.++++++++++++|.
T Consensus 71 ~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~ 148 (547)
T PRK10522 71 ALTTLGHHFVYRLRSEFIKRILDTHVERIEQL-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPK 148 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45668899999999999999999999999998 899999999999999998765 4677888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchH---HHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGE---KQAVAKYNESLTKAYKSGVH 159 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~~~~~~~~~~ 159 (478)
+++++++++|+.+++..++.++.++..++.++..+++++.+.|.++|+++++ ++.+ +.+.+++++..+++.+...+
T Consensus 149 l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (547)
T PRK10522 149 MLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIR 227 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHH
Confidence 9999999999888888888899999999999999999999999999999996 4443 35567888877777666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 048556 160 EGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIE 239 (478)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~ 239 (478)
.............++..+...+.+++++.. +..+.+.+..+..+......|+..+...+..++++..+.+|+.++++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~ 304 (547)
T PRK10522 228 ADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLAL 304 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 544444333332222222222223333222 11233333333333444567999999999999999999999999875
Q ss_pred cCCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccE
Q 048556 240 RKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319 (478)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 319 (478)
.+++.+... ....+ ..+.++++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+|+|++|+
T Consensus 305 ~~~~~~~~~--~~~~~-~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~ 379 (547)
T PRK10522 305 APYKAEFPR--PQAFP-DWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE 379 (547)
T ss_pred ccccccccc--ccccC-cCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 433211111 11111 1247999999999974 247999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 048556 320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ 399 (478)
Q Consensus 320 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~ 399 (478)
|.+||+++.+++.+++|++++||||++++|++|++|| + ++.++++++++++..++.+++. .|+|. .+|.+
T Consensus 380 i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~ 449 (547)
T PRK10522 380 ILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR-----ISNLK 449 (547)
T ss_pred EEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-----CCCCC
Confidence 9999999999999999999999999999999999999 2 3566777776666666555443 23332 14789
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
||||||||++||||++++|+++|||||||+||+++++.+.+.+.+.. +++|+|+||||++.++.||+|++|++|+++|
T Consensus 450 LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 450 LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529 (547)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999997553 4799999999999999999999999999986
No 41
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.8e-72 Score=659.99 Aligned_cols=453 Identities=21% Similarity=0.284 Sum_probs=374.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 048556 5 IVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLT 84 (478)
Q Consensus 5 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 84 (478)
.+.+.++...++..+|+|+++++...+++. ++|++++++++|++.+++++. .+..++..++.+++++++++..-.+.+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~-~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~ 443 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKF-TSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVAS 443 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888899999999999999999987 899999999999999999884 455566666666655544443211122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 85 LVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAA 164 (478)
Q Consensus 85 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (478)
++.++++++++.+..++.+++++..++..+..+++.+.+.|.++|+++||.|++|+.+.+++++..++..+...+.....
T Consensus 444 l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~ 523 (1622)
T PLN03130 444 LIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLS 523 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333344455567788888889999999999999999999999999999999999999888777666554444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Q 048556 165 GLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLI 244 (478)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 244 (478)
.....+.... ...+.++++|++.+..|.+|+|.+++++.++..+..|+..++..+..+.++.++++|+.++++.++..
T Consensus 524 ~~~~~~~~~~--~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~ 601 (1622)
T PLN03130 524 AFNSFILNSI--PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERV 601 (1622)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 3332221111 12345667899999999999999999988888889999999999999999999999999999754322
Q ss_pred ccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCc-cEEEEC
Q 048556 245 DAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLID 323 (478)
Q Consensus 245 ~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~-G~i~~~ 323 (478)
.... .......+.|+++|++|+|++++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+
T Consensus 602 ~~~~---~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l- 677 (1622)
T PLN03130 602 LLPN---PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI- 677 (1622)
T ss_pred cccC---CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-
Confidence 1111 111111246999999999975434679999999999999999999999999999999999999999 89974
Q ss_pred CeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556 324 GVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG 403 (478)
Q Consensus 324 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 403 (478)
|++|+||||+|++|+|||||||++|.| .++++.+++++.++++++++.+|+|++|.+||+|.+||||
T Consensus 678 ------------~~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGG 744 (1622)
T PLN03130 678 ------------RGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGG 744 (1622)
T ss_pred ------------cCeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHH
Confidence 678999999999999999999999997 5889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQE-ALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
|||||+||||++++|+++||||||||||+++++++++ +++...+++|+|+|||+++.++.||+|++|++|+++++
T Consensus 745 QKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~ 820 (1622)
T PLN03130 745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820 (1622)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999988865 56666678999999999999999999999999999863
No 42
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1e-66 Score=570.52 Aligned_cols=449 Identities=17% Similarity=0.167 Sum_probs=377.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHH
Q 048556 5 IVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALS-KGWLL 83 (478)
Q Consensus 5 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 83 (478)
.....++..++|..+|++....+..+|++ ++|++++|+++|++.+.+.+...+..++..++.++++.+.++. .+|.+
T Consensus 164 ~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l 241 (659)
T TIGR00954 164 LRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVG 241 (659)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 34455555666666666666666667764 5899999999999999999999999999999999887777775 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLA 163 (478)
Q Consensus 84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
++++++..|+.+++.+++.+++.+..++.++..+++.+.+.|.++|+++||+|+.++.+.+++++..+++.+...+..+.
T Consensus 242 ~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~ 321 (659)
T TIGR00954 242 PAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKF 321 (659)
T ss_pred HHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHH-h----CCCCHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 164 AGLGFGAFTFVAFS--SYSLAIWFGGKMIL-E----KGYKGGDVIN-VIFC---VMIGSMSLGQASPCISAFAAGQAAAY 232 (478)
Q Consensus 164 ~~~~~~~~~~~~~~--~~~~~l~~g~~lv~-~----g~ls~G~l~~-~~~~---~~~~~~~l~~l~~~~~~~~~~~~a~~ 232 (478)
.+...++..++... ..+++++.|...+. . |.+|.|.+++ ++.+ +..+..|+..+...+..++++.++.+
T Consensus 322 ~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~ 401 (659)
T TIGR00954 322 RFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTA 401 (659)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777643 23333333442332 2 7899998776 4443 34556789999999999999999999
Q ss_pred HHHHHHccCCCccc-------C-C-CCC-------------CccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCC
Q 048556 233 KLFEAIERKPLIDA-------Y-D-SNG-------------VKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGT 290 (478)
Q Consensus 233 ri~~~l~~~~~~~~-------~-~-~~~-------------~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~ 290 (478)
|+.++++.+++... . . .+. .......+.|+++||+|.|++ ++++|+|+||+|++||
T Consensus 402 Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge 479 (659)
T TIGR00954 402 RVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGN 479 (659)
T ss_pred HHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCC
Confidence 99999975332110 0 0 000 000112346999999999974 2479999999999999
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCC-------CC
Q 048556 291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-------DG 363 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~-------~~ 363 (478)
+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++||+.++. +.
T Consensus 480 ~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~ 548 (659)
T TIGR00954 480 HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRG 548 (659)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccC
Confidence 9999999999999999999999999999998763 56899999999999999999999874 34
Q ss_pred CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 048556 364 ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALD 443 (478)
Q Consensus 364 ~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~ 443 (478)
.++++++++++.+++.++++. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+.++
T Consensus 549 ~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~ 626 (659)
T TIGR00954 549 LSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCR 626 (659)
T ss_pred CCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 567889999999999999887 999999876 577999999999999999999999999999999999999999999997
Q ss_pred HhcCCCeEEEEecCchhhhhcCEEEEEeC
Q 048556 444 KIMINRTTVIVAHRLSTVRNADLIAVIHQ 472 (478)
Q Consensus 444 ~~~~~~t~i~itH~~~~~~~~d~i~vl~~ 472 (478)
+. ++|+|+||||++.++.||++++|+.
T Consensus 627 ~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 627 EF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred Hc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 73 7899999999999999999999974
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=5.9e-66 Score=606.76 Aligned_cols=455 Identities=21% Similarity=0.250 Sum_probs=369.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556 4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL 83 (478)
Q Consensus 4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (478)
..+.+.++...++..+|+|+++++...+++. ++|++++++++|++.+..+. ..+..++..++.+++++++++..-.+.
T Consensus 382 ~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~-~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~ 459 (1522)
T TIGR00957 382 CFVSGMRIKTAVMGAVYRKALVITNSARKSS-TVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPS 459 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhcCCC-CHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3567899999999999999999999999987 89999999999999998865 445555566666555554443322223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLA 163 (478)
Q Consensus 84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
+++.++++++++.+..++.+++++..++..+..+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+....
T Consensus 460 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~ 539 (1522)
T TIGR00957 460 VLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYL 539 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666667788889999999999999999999999999999999999999999998887776655444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556 164 AGLGFGAFTFVAFSSYSLAIWFGGKMILE--KGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK 241 (478)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~g~~lv~~--g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 241 (478)
......... . ....+.++.++.+.+.. +.++.+.+++.+.++..+..|+..+...+..+.++..+.+|+.++++.+
T Consensus 540 ~~~~~~~~~-~-~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~ 617 (1522)
T TIGR00957 540 HAVGTFTWV-C-TPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHE 617 (1522)
T ss_pred HHHHHHHHH-H-HHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 333222111 1 11122233355666653 5688888888887788888899999999999999999999999999765
Q ss_pred CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556 242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 321 (478)
++...............+.|+++|++|+|+++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 618 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~ 696 (1522)
T TIGR00957 618 ELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH 696 (1522)
T ss_pred ccccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEE
Confidence 43211100000001112369999999999743 35799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556 322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401 (478)
Q Consensus 322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 401 (478)
+|| +|+||||+|++|++||+|||.+|.+ .++++..++++.+++.++++.+|+|++|.+|++|.+||
T Consensus 697 ~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LS 762 (1522)
T TIGR00957 697 MKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLS 762 (1522)
T ss_pred ECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCC
Confidence 986 5999999999999999999999975 46677888889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH---hcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDK---IMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~---~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
||||||++||||++++|+++|||||||+||+.+++.+++.+.+ ..+++|+|+|||+++.++.||+|++|++|++++
T Consensus 763 GGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~ 841 (1522)
T TIGR00957 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISE 841 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEe
Confidence 9999999999999999999999999999999999999999864 346799999999999999999999999999976
No 44
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-66 Score=583.13 Aligned_cols=456 Identities=23% Similarity=0.266 Sum_probs=377.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556 4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL 83 (478)
Q Consensus 4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (478)
..++|.|+...+-..+|+|.++++...-... .+|+++|.++.|+++++++.......+...+..+++...++..++|.
T Consensus 266 ~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~-t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~s- 343 (1381)
T KOG0054|consen 266 SFRVGMRLRSALISAIYRKALRLSNSARGET-TVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPS- 343 (1381)
T ss_pred HHhhhhhHHHHHHHHHHHhhhcCchhhccCC-CcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-
Confidence 4568889999999999999999999887676 79999999999999999988776665554444444443333345553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLA 163 (478)
Q Consensus 84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
+++.++++.+++.+..++.+++++.+++.....+++.+...|.++||++||.|+||+.+.++..+..++..+.-.+....
T Consensus 344 a~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~ 423 (1381)
T KOG0054|consen 344 ALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYL 423 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556667778889999999999999999999999999999999999999999999998887777766555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 164 AGLGFGAFTFVAFSSYSLAIWFGGKM-ILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~g~~l-v~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
.++..........+ +.++.++++. ...+.++....++.+.++..+..|+..++..+..+.++.++.+|+.+++..++
T Consensus 424 ~~~~~~~~~~~p~l--v~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e 501 (1381)
T KOG0054|consen 424 SALNSFLNFFSPVL--VSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEE 501 (1381)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 55544333333222 2233455555 45677888788888889999999999999999999999999999999998654
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
....... ..+.......++++|.+|+|++.+..+.|+||||+|++|+.+|||||.|||||||+.+|+|..+..+|++.+
T Consensus 502 ~~~~~~~-~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v 580 (1381)
T KOG0054|consen 502 LDPDSVE-RSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAV 580 (1381)
T ss_pred cCccccc-cCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEE
Confidence 3222111 011222334699999999998643456999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
+|. ++||||.||+|+|||||||.||.| .+.++-.++.+.|+++++++.||.|..|.+||+|.+|||
T Consensus 581 ~gs-------------iaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSG 646 (1381)
T KOG0054|consen 581 NGS-------------VAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSG 646 (1381)
T ss_pred cCe-------------EEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcH
Confidence 774 999999999999999999999997 577888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA-LDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
||||||+||||+++|++|++||+|.||+|+.+.+.+++. |+...++||+|+|||.++.+++||+|++|+||+|+++
T Consensus 647 GQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVES 723 (1381)
T ss_pred hHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecc
Confidence 999999999999999999999999999999977766654 6667789999999999999999999999999999863
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.2e-63 Score=583.44 Aligned_cols=449 Identities=19% Similarity=0.248 Sum_probs=371.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556 4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL 83 (478)
Q Consensus 4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (478)
..+.+.++...+...+|+|+++++...+++. ++|++++++++|++.+...+.... .++..++.+++++++++....+.
T Consensus 146 ~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~-~~g~i~nl~s~Dv~~i~~~~~~~~-~~~~~pi~i~~~~~lL~~~~G~~ 223 (1490)
T TIGR01271 146 LHHLGMQMRIALFSLIYKKTLKLSSRVLDKI-STGQLVSLLSNNLNKFDEGLALAH-FVWIAPLQVILLMGLIWELLEVN 223 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhcCC-CHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777778888888999999999999987 899999999999999999876654 34455555555555555544556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLA 163 (478)
Q Consensus 84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
+++.++++++++.+..++.+++.+..++.+...+++.+.+.|.++|+++||.+++|+.+.+++++..++..+...+....
T Consensus 224 ~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~ 303 (1490)
T TIGR01271 224 GFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYL 303 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777788888888899999999999999999999999999999999999999999999988887776665555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 164 AGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSL-GQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
.........+ ....+.++.+++|.+..+ ++++.+++++.++..+..|+ ..++..+..+.++.++++||.+++..++
T Consensus 304 ~~~~~~~~~~--~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e 380 (1490)
T TIGR01271 304 RYFYSSAFFF--SGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEE 380 (1490)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3332222221 222334555667766644 68898888888887777776 4788889999999999999999997643
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCC-------------------------------CCCcccccceeeecCCCE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSR-------------------------------PGEQIFNGFSLSIPSGTT 291 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-------------------------------~~~~~l~~is~~i~~G~~ 291 (478)
.... . . ......++++|++|.|+.. ..+++|+|+||+|++||+
T Consensus 381 ~~~~-~---~--~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~ 454 (1490)
T TIGR01271 381 YKTL-E---Y--NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQL 454 (1490)
T ss_pred cccc-c---c--cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCE
Confidence 2111 1 0 0112358999999999521 013689999999999999
Q ss_pred EEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHH
Q 048556 292 AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMA 371 (478)
Q Consensus 292 ~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~ 371 (478)
++|+||||||||||+++|+|+++|++|+|.++| .++||||+|++|++|++|||.+|.+ .+.++..+
T Consensus 455 ~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~ 520 (1490)
T TIGR01271 455 LAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTS 520 (1490)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHH
Confidence 999999999999999999999999999999987 4999999999999999999999865 45556677
Q ss_pred HHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCe
Q 048556 372 AAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA-LDKIMINRT 450 (478)
Q Consensus 372 a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t 450 (478)
+++.+++.+++..+|+|++|.+|++|.+||||||||++||||++.+|+++|||||||+||+.+++.+++. ++...+++|
T Consensus 521 ~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~t 600 (1490)
T TIGR01271 521 VIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT 600 (1490)
T ss_pred HHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCe
Confidence 7888899999999999999999999999999999999999999999999999999999999999999985 667667899
Q ss_pred EEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 451 TVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 451 ~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+|+|||+++.++.||+|++|++|++++
T Consensus 601 vilvtH~~~~~~~ad~ii~l~~g~i~~ 627 (1490)
T TIGR01271 601 RILVTSKLEHLKKADKILLLHEGVCYF 627 (1490)
T ss_pred EEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999875
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.7e-61 Score=565.22 Aligned_cols=456 Identities=19% Similarity=0.218 Sum_probs=373.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCChhhhh--ccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048556 4 WIVTGERQAARIRGLYLKTLLRQDIGFFD--KETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGW 81 (478)
Q Consensus 4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (478)
..+.+.++...++..+|+|+++++...+. +. .+|+++|++++|++.+.+++.. +..++..++.+++++++++.+-.
T Consensus 309 ~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~-~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG 386 (1560)
T PTZ00243 309 SIRCGLQYRSALNALIFEKCFTISSKSLAQPDM-NTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVG 386 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCC-CHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888889999999999999998775 44 6899999999999999999855 45566677777776666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG 161 (478)
Q Consensus 82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
+.+++.++++++++.+..++.+++.+..++.....+++.+.+.|.++|++.||.++||+.+.+++++..++..+...+..
T Consensus 387 ~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~ 466 (1560)
T PTZ00243 387 WCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQ 466 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777788888999999999999999999999999999999999999999999999998777766655554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556 162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 241 (478)
........+......+ +.++.+++|.+..+.+|++.+++++.++..+..|+..++..+..+.++.++++||.++++.+
T Consensus 467 ~~~~~~~~~~~~~p~l--~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~ 544 (1560)
T PTZ00243 467 LARVATSFVNNATPTL--MIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECD 544 (1560)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 4444433332222222 22335677888899999999999999999999999999999999999999999999999754
Q ss_pred CCcc----cC-C------------C------CC-------Cc---------------------------cCCCCccEEEE
Q 048556 242 PLID----AY-D------------S------NG-------VK---------------------------LDDIRGDIELK 264 (478)
Q Consensus 242 ~~~~----~~-~------------~------~~-------~~---------------------------~~~~~~~i~~~ 264 (478)
+... +. . . +. .. .....+.+.++
T Consensus 545 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (1560)
T PTZ00243 545 NATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVE 624 (1560)
T ss_pred cccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccc
Confidence 3100 00 0 0 00 00 00011246777
Q ss_pred eEEEECCCC-------------------------------------CCCcccccceeeecCCCEEEEEcCCCCChHHHHH
Q 048556 265 DIYFSYPSR-------------------------------------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVIS 307 (478)
Q Consensus 265 ~v~~~y~~~-------------------------------------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ 307 (478)
|++|.++.. .++++|+|+||+|++||+++|+||||||||||++
T Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~ 704 (1560)
T PTZ00243 625 DTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQ 704 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHH
Confidence 877764310 1246899999999999999999999999999999
Q ss_pred HHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCC
Q 048556 308 LIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQ 387 (478)
Q Consensus 308 ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~ 387 (478)
+|+|+++|++|+|.+ +++|+|+||+|++|++|++|||.++.+ .+.++..++++.+++.++++.+|+
T Consensus 705 ~i~G~~~~~~G~i~~-------------~~~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~ 770 (1560)
T PTZ00243 705 SLLSQFEISEGRVWA-------------ERSIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGG 770 (1560)
T ss_pred HHhcCCCCCCcEEEE-------------CCeEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhc
Confidence 999999999999975 357999999999999999999999875 345667788888999999999999
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEEecCchhhhhcCE
Q 048556 388 GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA-LDKIMINRTTVIVAHRLSTVRNADL 466 (478)
Q Consensus 388 g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~~d~ 466 (478)
|++|.+|++|.+||||||||++||||++.+|+++|||||||+||+.+++.+++. +....+++|+|+|||+++.++.||+
T Consensus 771 g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ 850 (1560)
T PTZ00243 771 GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADY 850 (1560)
T ss_pred cchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCE
Confidence 999999999999999999999999999999999999999999999998888765 4444468999999999999999999
Q ss_pred EEEEeCCEEee
Q 048556 467 IAVIHQGKLVE 477 (478)
Q Consensus 467 i~vl~~G~i~~ 477 (478)
|++|++|++++
T Consensus 851 ii~l~~G~i~~ 861 (1560)
T PTZ00243 851 VVALGDGRVEF 861 (1560)
T ss_pred EEEEECCEEEE
Confidence 99999999875
No 47
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.4e-54 Score=390.89 Aligned_cols=208 Identities=34% Similarity=0.574 Sum_probs=179.8
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC-CCHHHhhcce
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE-FQLKWIRGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~-~~~~~~r~~i 339 (478)
|+++|++++|.+ ..+|+|||++|++||.++|+||||||||||+|.|+++.+|++|+|.+||.++.. .+...+|+++
T Consensus 3 i~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 3 IEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred EEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 799999999963 479999999999999999999999999999999999999999999999987743 3778899999
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
|+|+|+..||+. |+.||+.++.- ..+.+|-.+. ..++++.. |+.......+.+|||||+||+||||||.
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~-----A~~lL~~V--GL~~ka~~yP~qLSGGQqQRVAIARALa 152 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALA 152 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHH-----HHHHHHHc--CchhhhhhCccccCcHHHHHHHHHHHHc
Confidence 999999999997 99999998741 1222221111 12334443 5666666677899999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~ 478 (478)
-+|+++++|||||||||+...++.+.++++. ++.|+++|||.+.+++. ||||+.||+|+++|+
T Consensus 153 M~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~ 217 (240)
T COG1126 153 MDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE 217 (240)
T ss_pred CCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe
Confidence 9999999999999999999999999999986 57899999999999998 899999999998863
No 48
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=5.9e-53 Score=415.05 Aligned_cols=216 Identities=30% Similarity=0.515 Sum_probs=203.2
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
+.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|++||.++..++..++|+.
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 358999999999642 3579999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 339 IGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 339 i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
++|+||++.+|++|+++|+....+ .++++++++++.+++.+++..+|.|+++.++++|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999975433 4678999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 419 RILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 419 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+++||||||++||+.+++.+.+.|++..+++|+|+|||+++++..||||++|++|++++
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~ 216 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQ 216 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEee
Confidence 99999999999999999999999998777899999999999999999999999999986
No 49
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-52 Score=401.86 Aligned_cols=211 Identities=37% Similarity=0.585 Sum_probs=181.7
Q ss_pred EEEEeEEEECCCC--CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH---Hh
Q 048556 261 IELKDIYFSYPSR--PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK---WI 335 (478)
Q Consensus 261 i~~~~v~~~y~~~--~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~ 335 (478)
|+++|||+.|+.. ...++|+|+||+|++||+.||+|+||||||||+|++.++..|++|+|.+||+++..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 124699999999999999999999999999999999999999999999999998887754 45
Q ss_pred hcceEEEecCCCCCc-ccHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 336 RGKIGLVSQEPVLFT-SSIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 336 r~~i~~v~Q~~~lf~-~ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
|++||+++|++.|++ -|+++|+.|+-.-+ +.+++. .+...+.+++ |+..+.+..+.+||||||||++|||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~--~RV~elLelV-----gL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIK--QRVAELLELV-----GLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHH--HHHHHHHHHc-----CChhhhccCchhcCcchhhHHHHHH
Confidence 788999999999998 59999999975322 233332 2222223332 6666777788999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556 413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478 (478)
Q Consensus 413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~ 478 (478)
||+.+|+||+.|||||||||+|.+.|.+.|+++.+ +-|+++|||.|+.++. |||+.||++|+++|+
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEe
Confidence 99999999999999999999999999999998863 6899999999999998 999999999999984
No 50
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-51 Score=382.90 Aligned_cols=207 Identities=35% Similarity=0.573 Sum_probs=180.1
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+|+|||++|.+ +.+++|+||+|++||+++++|||||||||++|+|.|+++|++|+|++||.++++++.-++|++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 789999999963 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccc--cccCCCCCCChHHHHHHHHHHHHc
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDT--MVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t--~~~~~g~~LSgGq~Qrl~lARall 415 (478)
||-|...||+. ||.|||.+-..-. +.+++.+. .++.+..+ |++. .....+.+|||||+||+.+||||.
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r-----~~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RALA 151 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR-----ADELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARALA 151 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHHh
Confidence 99999999987 9999999754222 33333322 23333332 5553 455678999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
.+|+++++||||+||||.++.++.+-+.++.+ ++|+|+|||+++++-+ +|||.+|++|++++
T Consensus 152 adP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q 216 (309)
T COG1125 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQ 216 (309)
T ss_pred cCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEE
Confidence 99999999999999999999999999988753 7999999999997554 99999999999975
No 51
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-50 Score=407.22 Aligned_cols=217 Identities=30% Similarity=0.491 Sum_probs=186.1
Q ss_pred CccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--C
Q 048556 258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--F 330 (478)
Q Consensus 258 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~ 330 (478)
.+.|+++|++++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++.. .
T Consensus 78 ~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred CceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 3579999999999642 3579999999999999999999999999999999999996 579999999999973 4
Q ss_pred CHHHhhcceEEEecCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556 331 QLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 331 ~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
+...+|+.++||||+|++|++|++||+.++.. ..++++.+++.....++. ..+++++++.+++++.+||||||||+
T Consensus 157 ~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~--~~L~~~l~~~~~~~~~~LSgGqkqRl 234 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKS--AALWDEVKDDLDKAGNALSGGQQQRL 234 (329)
T ss_pred chHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHH--cCCcchhhhhhhCCcccCCHHHHHHH
Confidence 55678999999999999999999999998642 234444433221111111 12455677889999999999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+||||++++|+|+||||||++||+.+.+.+.+.|+++.+++|+|+|||+++++.. ||||+||++|+++|
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e 304 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEE 304 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999988878999999999999887 99999999999987
No 52
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=6.5e-50 Score=386.58 Aligned_cols=216 Identities=50% Similarity=0.832 Sum_probs=199.5
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|+++.|++. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 357999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556 341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420 (478)
Q Consensus 341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i 420 (478)
|+||++.+|+.|++||+.++.+..+.+++.++++..++.+++..+|.|+++..+..+.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999987654556667777788888999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 421 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~ 216 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVE 216 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999998877889999999999998899999999999875
No 53
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8e-51 Score=370.09 Aligned_cols=209 Identities=34% Similarity=0.518 Sum_probs=188.6
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCc-----cEEEECCeecCC--CC
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA-----GEVLIDGVNLKE--FQ 331 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~-----G~i~~~g~~~~~--~~ 331 (478)
..++++|+++.|. ++.+|+|||++|++++++|++||||||||||+|.+.++.+..+ |+|.++|+++.+ +|
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 3589999999996 3579999999999999999999999999999999999998876 999999999976 57
Q ss_pred HHHhhcceEEEecCCCCCcccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG------ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 332 ~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~------~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
.-++|++||+|+|.|.-|+.||+||+.+|..- .-++-++.+++.+.+++-+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 89999999999999999999999999998421 123457788999999887642 44567888999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||||||||.-+|+||+||||||||||.+..+|.+.|.+++++-|+++|||+|.-+.. +|+...+-.|+++|
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE 228 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVE 228 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEE
Confidence 9999999999999999999999999999999999999999989999999999998766 89999999999997
No 54
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.2e-49 Score=380.49 Aligned_cols=216 Identities=37% Similarity=0.645 Sum_probs=202.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|++++|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 58999999999743 24799999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556 340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419 (478)
Q Consensus 340 ~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ 419 (478)
+|+||++.+|++|++||+.+..+ ...+++.++++..++.+++..+|.|+++.+++.+.+|||||+||++||||++.+|+
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred EEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987653 45678888899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 420 ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 420 ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~ 217 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVE 217 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEe
Confidence 9999999999999999999999998876789999999999998899999999999875
No 55
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-49 Score=382.03 Aligned_cols=216 Identities=48% Similarity=0.838 Sum_probs=201.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|++++|++ .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5899999999963 24699999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556 340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419 (478)
Q Consensus 340 ~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ 419 (478)
+|+||++.+|++|++||+.++.+....+++.++++..++.++++.+|.|+++.++....+||||||||++|||||+.+|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999876556677788888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 420 ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 420 ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||++++|++|++++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~ 217 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIE 217 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEE
Confidence 9999999999999999999999998877889999999999988899999999999875
No 56
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3e-49 Score=377.64 Aligned_cols=217 Identities=41% Similarity=0.712 Sum_probs=199.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|+++.|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999642 24799999999999999999999999999999999999999999999999998877777778899
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556 340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419 (478)
Q Consensus 340 ~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ 419 (478)
+|++|++.+|..|++||+.++.+..+.+++.+.++..++.+.+..+|.|+++.+.+...+|||||+||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998899999998755445567778888889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 420 ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 420 ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||++++|++|++++
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVA 218 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEee
Confidence 9999999999999999999999998866689999999999887799999999999875
No 57
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-49 Score=380.98 Aligned_cols=216 Identities=56% Similarity=0.923 Sum_probs=199.9
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999643 237999999999999999999999999999999999999999999999999988877778888999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556 341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420 (478)
Q Consensus 341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i 420 (478)
|+||++.+|+.|++||+.++.+....+++.+.++..++.++++.+|.|+++.++....+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998665556677777888889999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 421 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~ 216 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVE 216 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEee
Confidence 999999999999999999999998877889999999999998899999999999874
No 58
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.8e-49 Score=372.54 Aligned_cols=209 Identities=35% Similarity=0.537 Sum_probs=173.9
Q ss_pred EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH----h
Q 048556 261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW----I 335 (478)
Q Consensus 261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~----~ 335 (478)
++++||++.|.... ..++|+++||+|++||+++|+||||||||||+++|.|+..|++|+|.++|.++..++.++ .
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996431 247999999999999999999999999999999999999999999999999999888543 3
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCcccccc-CCCCCCChHHHHHHHHH
Q 048556 336 RGKIGLVSQEPVLFTS-SIKDNINYGK--DGASIAEIMAAAELANAAKFIDSLPQGLDTMVG-EHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 336 r~~i~~v~Q~~~lf~~-ti~eNl~~~~--~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~-~~g~~LSgGq~Qrl~lA 411 (478)
|++||||+|+..|++. |++||+.++. +.....+..++ ..+..+.+ |+..... ..+.+|||||+||+|||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~-----~~~l~~~l--gl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA-----AEELLEVL--GLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHH-----HHHHHHhc--CChhhhccCCchhcCHHHHHHHHHH
Confidence 5679999999999987 9999999642 11121111111 12223332 5554444 66889999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEe
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLV 476 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~ 476 (478)
|||+.+|++++.||||++||.++.+.|++.+++..+ ++|+|+|||++.....|||++.|.||++.
T Consensus 155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999998853 68999999999999999999999999864
No 59
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.1e-49 Score=379.13 Aligned_cols=219 Identities=50% Similarity=0.832 Sum_probs=198.3
Q ss_pred CCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhh
Q 048556 257 IRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIR 336 (478)
Q Consensus 257 ~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r 336 (478)
..+.++++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34579999999999753224699999999999999999999999999999999999999999999999998877777778
Q ss_pred cceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 337 GKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+.++|++|++.+|+.|++||+.++......+++.+..+..++.++++.+|.|+++.+.+...+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999998765444555555566677889999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKL 475 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i 475 (478)
+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988767899999999999988999999999975
No 60
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=4.5e-49 Score=380.90 Aligned_cols=217 Identities=65% Similarity=1.042 Sum_probs=199.3
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|+++.|++.++.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997432347999999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556 341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420 (478)
Q Consensus 341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i 420 (478)
|++|++.+|+.|++||+.++.+....+++.+.++..++.+++..+|.|+++..+....+|||||+||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999999987655556667777788888999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 421 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~ 217 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVE 217 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999988776789999999999998899999999999875
No 61
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.4e-49 Score=378.49 Aligned_cols=215 Identities=50% Similarity=0.817 Sum_probs=200.4
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999963 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556 341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420 (478)
Q Consensus 341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i 420 (478)
|++|++.+|++|++||+.++.+..+++++..+++..++.+++..+|.|+++.+.....+|||||+||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999988665666677778888899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 421 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~ 215 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVE 215 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998766789999999999998899999999999865
No 62
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.4e-48 Score=381.80 Aligned_cols=220 Identities=32% Similarity=0.584 Sum_probs=202.7
Q ss_pred CCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh
Q 048556 256 DIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI 335 (478)
Q Consensus 256 ~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~ 335 (478)
...+.++++|++++|++. ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 445789999999999742 2469999999999999999999999999999999999999999999999999998888888
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 336 RGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 336 r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
++.++|++|++.+|++|++||+..... ...++++++++..++.+++..+|.|+++.+++.+.+|||||+||++||||++
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999976432 2455677888888999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
++|+++||||||++||+.+++.+.+.+++..+++|+|++||+++.+..||+|++|++|++++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~ 234 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVE 234 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999988777899999999999998899999999999975
No 63
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-49 Score=370.55 Aligned_cols=201 Identities=34% Similarity=0.527 Sum_probs=170.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.+++++|+++|++ ..+|+|+||+|++||+++|+||||||||||+|+++|+.+|++|+|.++|.++..- ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999964 5799999999999999999999999999999999999999999999999998443 5679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+||+|++.||+= |++||+.++-... +.+|-.+ .+.++++.. |+...-...+.+||||||||+||||||+.
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~-----~a~~~L~~V--gL~~~~~~~P~qLSGGMrQRVaiARAL~~ 147 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARE-----RAKELLELV--GLAGFEDKYPHQLSGGMRQRVAIARALAT 147 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHH-----HHHHHHHHc--CCcchhhcCccccChHHHHHHHHHHHHhc
Confidence 999999999984 9999999986532 1111111 123333333 55555556678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeC--CEE
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQ--GKL 475 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~--G~i 475 (478)
+|++|+|||||+|||+.|+..+.+.+.++.+ ++|+++|||+.+++-. +|||+||.+ |+|
T Consensus 148 ~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 148 RPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred CCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 9999999999999999999999999988764 5899999999998666 999999999 555
No 64
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.2e-49 Score=377.92 Aligned_cols=204 Identities=33% Similarity=0.531 Sum_probs=179.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|++|+|++ +++++|+||+|++||+++|+||||||||||+|.|+|+.+|.+|+|.+||+++.+++.+++.+.+
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3789999999963 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCC-------CHH---HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556 340 GLVSQEPVL-FTSSIKDNINYGKDGA-------SIA---EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 340 ~~v~Q~~~l-f~~ti~eNl~~~~~~~-------~~~---~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
+||||++.. |.-|++|-+.+|+-.+ +.+ .+.++++..++.++ ....-.+||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l-----------a~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL-----------ADRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH-----------hcCcccccChhHHHHH
Confidence 999999765 4559999999996221 222 35555666655544 4455689999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhh-hhcCEEEEEeCCEEee
Q 048556 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTV-RNADLIAVIHQGKLVE 477 (478)
Q Consensus 409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~-~~~d~i~vl~~G~i~~ 477 (478)
.|||||+.+|++++||||||+||...+.++++.++++.+ ++|+|+|.|+++.+ +.||++++|++|+++.
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a 219 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA 219 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe
Confidence 999999999999999999999999999999999999863 68999999999875 5699999999999975
No 65
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.3e-49 Score=353.39 Aligned_cols=204 Identities=30% Similarity=0.522 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH---Hhhc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK---WIRG 337 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 337 (478)
|+|+||+++|++. +++|+|+||+|++||++.++||||||||||+|+|++...|+.|+|.++|.|+..+..+ .+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999863 6799999999999999999999999999999999999999999999999999877644 4799
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCC------CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGKD------GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI 410 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~------~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l 410 (478)
+||+|+||..|... |++||++|.-. ..-.+++.++++.+|+.+-...+| .+|||||+||++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 99999999999876 99999998642 112346777888888888777776 6899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||++.+|++||-||||.+|||++..+|++.+.++. .+.||++.||+.+.+.. --|++.+++|+++.
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~ 217 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVR 217 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEe
Confidence 999999999999999999999999999999999986 48899999999999988 58999999999874
No 66
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-46 Score=363.56 Aligned_cols=452 Identities=19% Similarity=0.206 Sum_probs=338.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556 4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL 83 (478)
Q Consensus 4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (478)
.+..|+.+..++|.++.++++..|...+++. +++.++.++++|+..+. +-...++.+..+.+..+++.+++.++||++
T Consensus 72 ~t~~gq~~I~klr~~~~~kil~tplerier~-~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~m 149 (546)
T COG4615 72 LTTLGQHFIYKLRSEFIKKILDTPLERIERL-GSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKM 149 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh-cccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3567899999999999999999999999998 89999999999999998 444557778889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHH--HHHHHHHHHHHHHHHHHHH
Q 048556 84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQA--VAKYNESLTKAYKSGVHEG 161 (478)
Q Consensus 84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~--~~~~~~~~~~~~~~~~~~~ 161 (478)
.++.++.+.+.++...+...+..+.....++..+++....+..+.|.++++...-..++ .+.+....+.+.+...+.+
T Consensus 150 f~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n 229 (546)
T COG4615 150 FLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRAN 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhhh
Confidence 98888888777777777777788888888889999999999999999999987532221 1222222222222111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 048556 162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGY-KGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~l-s~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~ 240 (478)
.+......+.+.+..... ....|+..+-.. +......+......+..|+.++.+.++.+.++.+|.+++.++-..
T Consensus 230 ~f~~la~~~~ni~l~~lI----Glvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~ 305 (546)
T COG4615 230 TFHLLAVNWSNIMLLGLI----GLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELA 305 (546)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcC
Confidence 111111122222222222 222233333222 222233333334455679999999999999999999999887554
Q ss_pred CCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320 (478)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 320 (478)
++....+.. .+.++. ..++++||.|+|++. ..-+.+||++|++||+|.|+|.|||||||++++|.|+|+|++|+|
T Consensus 306 ~~~a~~~~~--q~~p~~-~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I 380 (546)
T COG4615 306 PYKADFPRP--QAFPDW-KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (546)
T ss_pred CccccCCCC--CcCCcc-cceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCce
Confidence 332222211 112223 369999999999753 367899999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 048556 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG-ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ 399 (478)
Q Consensus 321 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~-~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~ 399 (478)
++||.+++.-+.++.|+-++-|+-|-+||+.++ +.+. ++++.+.+-++.-.+..... +.+|-= ....
T Consensus 381 ~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kts-l~d~~f-----s~~k 448 (546)
T COG4615 381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKTS-LNDGRF-----SNLK 448 (546)
T ss_pred eECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhhc-ccCCcc-----cccc
Confidence 999999999999999999999999999998643 2222 56655554444333322211 111111 1367
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKI-M-INRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~-~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
||.|||.|+|+--|++-+-||++|||=-+-=||.-++.+.+.+-.. + .+||++.|||+-.....|||++.|++|+++|
T Consensus 449 LStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e 528 (546)
T COG4615 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528 (546)
T ss_pred cccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceee
Confidence 9999999999999999999999999999999999999999887544 2 5899999999999999999999999999987
Q ss_pred C
Q 048556 478 K 478 (478)
Q Consensus 478 ~ 478 (478)
.
T Consensus 529 ~ 529 (546)
T COG4615 529 L 529 (546)
T ss_pred c
Confidence 3
No 67
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.8e-48 Score=391.34 Aligned_cols=210 Identities=33% Similarity=0.534 Sum_probs=177.8
Q ss_pred EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH---hh
Q 048556 261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW---IR 336 (478)
Q Consensus 261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r 336 (478)
|+++|++++|++.+ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.++ .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996321 247999999999999999999999999999999999999999999999999998887654 47
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 337 GKIGLVSQEPVLFT-SSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~-~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
+.|+|+||++.+|+ .|++||+.++.. ..+.++..+ .+.+.++.+ |+.......+.+||||||||++||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR-----KVTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999996 599999997532 122222211 112333333 55555566778999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+.+|++||||||||+||+.+++.+++.|+++.+ +.|+|+|||+++.++. ||+|++|++|++++
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~ 221 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 221 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999854 6899999999999866 99999999999986
No 68
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-48 Score=383.39 Aligned_cols=202 Identities=33% Similarity=0.567 Sum_probs=177.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.|+++||++.|++. .+++|+|++|++||+++|+||||||||||+|+|+|+.+|++|+|.|||.+++++++++ |.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999632 2999999999999999999999999999999999999999999999999999999886 789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC--C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDGA--S----IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~--~----~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
++|+|+.-||+. |++|||.|+-... . ++++.++++.. +++..+...+.+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L-----------~l~~lL~r~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLL-----------GLEHLLNRKPLQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHc-----------CChhHHhcCcccCChhhHHHHHHHH
Confidence 999999999997 9999999986432 2 23444444444 4555555667899999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||+++|++++||||+|+||+..+.....-|+++.+ +.|+|+|||+..++.. +|||+||++|+|.+
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999988653 5799999999988776 99999999999865
No 69
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=5.4e-48 Score=343.02 Aligned_cols=199 Identities=34% Similarity=0.561 Sum_probs=178.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
+.+++|.|.|... =-.++++|++||++||+||||||||||+++++|+..|.+|+|.|||+|....++.+ +-++
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS 74 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence 5678999999632 12588899999999999999999999999999999999999999999998877664 6799
Q ss_pred EEecCCCCCcc-cHHHHHhcCC-CCC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 341 LVSQEPVLFTS-SIKDNINYGK-DGA-----SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~-~~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
+++|+..||.. ||++|+.+|. |.- ..+++..++..+|+..+..++| .+||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHH
Confidence 99999999987 9999999996 332 2356888899999999988887 5799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+|+-|||+||||||+|||.-+++....+.+++ ++.|+++|||+++.++. +|+++++++|||..
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~ 210 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAA 210 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEe
Confidence 999999999999999999999999999998876 36799999999998877 99999999999975
No 70
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=6.6e-48 Score=367.38 Aligned_cols=207 Identities=28% Similarity=0.495 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH---Hhhc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK---WIRG 337 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 337 (478)
++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 24699999999999999999999999999999999999999999999999998766543 4678
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
.++|+||++.+|.. |++||+.++... ...++.. ..+.+.++.+ |+.........+||||||||++|||||
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral 153 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDAN-----ERVSAALEKV--GLEGKAHALPMQLSGGEQQRVAIARAI 153 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 89999999999875 999999875211 1111111 1122333333 444445556679999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i 475 (478)
+.+|+++||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 154 VHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998875 46899999999999875 999999999985
No 71
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.8e-44 Score=378.30 Aligned_cols=450 Identities=17% Similarity=0.158 Sum_probs=350.2
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGE------IIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIA 76 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~------l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (478)
+......+...-+...+.++-+.....|+... .|. .=+|+..|+..+.+.-......++.++++++...+++
T Consensus 109 L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~--~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iL 186 (604)
T COG4178 109 LNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQ--AGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGIL 186 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHh--cccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777777777775555443 332 3379999998888888888888888888887766666
Q ss_pred HH---------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHH
Q 048556 77 LS---------------KGWLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQ 141 (478)
Q Consensus 77 ~~---------------~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 141 (478)
+. +...+..++++.+++-.++..++++++-+..-+..+..+++...+...-++.+.|-.++-|+.
T Consensus 187 w~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~ 266 (604)
T COG4178 187 WSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKV 266 (604)
T ss_pred HHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHH
Confidence 52 233344445555666666777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 142 AVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCI 221 (478)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~ 221 (478)
+.++.++......+.-.+..........+......+..++-+..++-....|.++.|+++.....+......+..+...+
T Consensus 267 Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~ 346 (604)
T COG4178 267 ERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNY 346 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99888877666555333333333333333333333344444455666678999999999998888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHccCC--C-cc-cCCCCC-Ccc--CCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEE
Q 048556 222 SAFAAGQAAAYKLFEAIERKP--L-ID-AYDSNG-VKL--DDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAAL 294 (478)
Q Consensus 222 ~~~~~~~~a~~ri~~~l~~~~--~-~~-~~~~~~-~~~--~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~i 294 (478)
..++.-.+...|+.++.+.-. + +. ...... ... ......|+++|++..-|+. .+.++++||++++||.+-|
T Consensus 347 ~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~~llI 424 (604)
T COG4178 347 DAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGERLLI 424 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--CeeeccceeeeCCCCEEEE
Confidence 999999999999998874321 1 11 111000 000 1014679999999998753 4899999999999999999
Q ss_pred EcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCC--CCHHHHHHH
Q 048556 295 VGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--ASIAEIMAA 372 (478)
Q Consensus 295 vG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~~~~~~~~a 372 (478)
.||||||||||+|+|+|+++..+|+|..-. -..+-|+||.|++-.||+||-++++.+. .+|+++.++
T Consensus 425 ~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~v 493 (604)
T COG4178 425 TGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAV 493 (604)
T ss_pred ECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHH
Confidence 999999999999999999999999986520 2358999999999999999999998754 789999999
Q ss_pred HHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 048556 373 AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTV 452 (478)
Q Consensus 373 ~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i 452 (478)
+.++++.++++++.+ .+ .-...||+||+||+++||.++++|++++|||+|||||+++|..+.+.+++..++.|+|
T Consensus 494 L~~vgL~~L~~rl~~-~~----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvI 568 (604)
T COG4178 494 LHKVGLGDLAERLDE-ED----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVI 568 (604)
T ss_pred HHHcCcHHHHHHHhc-cC----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEE
Confidence 999999999988642 22 2467899999999999999999999999999999999999999999999988999999
Q ss_pred EEecCchhhhhcCEEEEEeC
Q 048556 453 IVAHRLSTVRNADLIAVIHQ 472 (478)
Q Consensus 453 ~itH~~~~~~~~d~i~vl~~ 472 (478)
-|+||.......++.+-+++
T Consensus 569 SV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 569 SVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred EeccchhhHHHHhhheeecc
Confidence 99999988777776666543
No 72
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.4e-47 Score=367.91 Aligned_cols=203 Identities=39% Similarity=0.607 Sum_probs=172.8
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC-----CCCccEEEECCeecCCCC--HH
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY-----DPQAGEVLIDGVNLKEFQ--LK 333 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-----~~~~G~i~~~g~~~~~~~--~~ 333 (478)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 478999999963 47999999999999999999999999999999999999 999999999999987776 56
Q ss_pred HhhcceEEEecCCCCCcccHHHHHhcCCCCC---C----HHHHHHHHHHhcHHHHHHhCCCCccccccCC--CCCCChHH
Q 048556 334 WIRGKIGLVSQEPVLFTSSIKDNINYGKDGA---S----IAEIMAAAELANAAKFIDSLPQGLDTMVGEH--GTQLSGGQ 404 (478)
Q Consensus 334 ~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~---~----~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~--g~~LSgGq 404 (478)
.+++.++|+||++.+|..|++||+.++.... . ++++.++++.. |++...... +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKA-----------ALWDEVKDRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHc-----------CCChHHhccCCcccCCHHH
Confidence 6788999999999999779999998753211 1 11223333333 343333333 58999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||++|||||+++|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 220 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE 220 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999988655899999999998765 99999999999875
No 73
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-47 Score=356.99 Aligned_cols=209 Identities=31% Similarity=0.453 Sum_probs=173.9
Q ss_pred cEEEEeEEEECCCCCC-CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC-CHHHhhc
Q 048556 260 DIELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF-QLKWIRG 337 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~-~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~-~~~~~r~ 337 (478)
-++++|+++.|+.+.. .++++||||+|.+||++||+|+||||||||.++|+|+.+|++|+|.++|.+.... ..+++++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 3789999999975310 1499999999999999999999999999999999999999999999999877553 3446789
Q ss_pred ceEEEecCCCC--Cc-ccHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556 338 KIGLVSQEPVL--FT-SSIKDNINYGKD----GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI 410 (478)
Q Consensus 338 ~i~~v~Q~~~l--f~-~ti~eNl~~~~~----~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l 410 (478)
.|-+|+|||+- =+ -|+++-|.=+-. +....+++++++.+++.+ .++...+.+|||||+||+||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~----------~~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPP----------SFLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCH----------HHHhcCchhcChhHHHHHHH
Confidence 99999999973 23 277776653321 123345666666666543 23345567899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC--CeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN--RTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478 (478)
Q Consensus 411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~--~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~ 478 (478)
||||.-+|++||||||||+||....+.|++.+.++.++ -|.|+|||++..+.+ ||||+||++|+++|.
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence 99999999999999999999999999999999988764 499999999999998 999999999999973
No 74
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-47 Score=366.92 Aligned_cols=207 Identities=34% Similarity=0.553 Sum_probs=176.1
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH---HHhhc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL---KWIRG 337 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 337 (478)
++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999963 479999999999999999999999999999999999999999999999999887664 56788
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
.++|+||++.+|++ |++||+.++.. ..+.++..+. +.+.++.+ |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-----VLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999999986 99999987632 1222222211 22334444 55555566778999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~ 217 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA 217 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEE
Confidence 9999999999999999999999999999998753 6899999999998876 99999999999875
No 75
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.8e-47 Score=364.76 Aligned_cols=208 Identities=36% Similarity=0.514 Sum_probs=176.4
Q ss_pred EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH----h
Q 048556 261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW----I 335 (478)
Q Consensus 261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~----~ 335 (478)
++++|++++|++.. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996421 147999999999999999999999999999999999999999999999999988766432 4
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 336 RGKIGLVSQEPVLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 336 r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
++.++|+||++.+|.+ |++||+.++.... ..++. ...+.++++.+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5789999999999987 9999998864211 11111 12234555555 6776677778899999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEE
Q 048556 413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKL 475 (478)
Q Consensus 413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i 475 (478)
||+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998754 6899999999999888999999999985
No 76
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-47 Score=353.92 Aligned_cols=208 Identities=34% Similarity=0.555 Sum_probs=176.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH---Hhh
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK---WIR 336 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r 336 (478)
.|++++|+++|.+ +.+++|+||+|++||+++|+||||||||||+|++.|+.+|++|+|.++|.++.+++.+ ++|
T Consensus 8 ~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 5999999999963 5799999999999999999999999999999999999999999999999999988764 458
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHH
Q 048556 337 GKIGLVSQEPVLFTS-SIKDNINYGKDGA---SIAEIMAAAELANAAKFIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~---~~~~~~~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lA 411 (478)
+++|+++|..-||+. |++||+.|.--.+ +++++.+. ... .++.. |+... ....+.+||||+++|.|||
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~l-v~~----KL~~V--GL~~~~~~~~PsELSGGM~KRvaLA 157 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIREL-VLM----KLELV--GLRGAAADLYPSELSGGMRKRVALA 157 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHH-HHH----HHHhc--CCChhhhhhCchhhcchHHHHHHHH
Confidence 999999999999987 9999999864222 23333221 111 11111 44444 3345789999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||+.-||+++++|||||||||.+...|-+.|+++.+ +.|+++|||+++++.. |||++++.+|+|+.
T Consensus 158 RAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~ 226 (263)
T COG1127 158 RAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIA 226 (263)
T ss_pred HHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEE
Confidence 999999999999999999999999999999998864 6899999999998776 89999999999863
No 77
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-47 Score=379.90 Aligned_cols=211 Identities=27% Similarity=0.479 Sum_probs=180.4
Q ss_pred cEEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC-------
Q 048556 260 DIELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF------- 330 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~------- 330 (478)
-|+++|++|+|++.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 589999999996421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ---------CHHHhhcceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCC
Q 048556 331 ---------QLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEH 396 (478)
Q Consensus 331 ---------~~~~~r~~i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~ 396 (478)
+...+|+.++||+|+| .+|+.|++||+.++.. ..+.++..+ ...++++.+ |++ ...++.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCChhHhcCC
Confidence 3456789999999998 6899999999988742 223333221 123455655 675 567888
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCE
Q 048556 397 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLIAVIHQGK 474 (478)
Q Consensus 397 g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~ 474 (478)
+.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999998874 4789999999999774 599999999999
Q ss_pred Eee
Q 048556 475 LVE 477 (478)
Q Consensus 475 i~~ 477 (478)
+++
T Consensus 254 i~~ 256 (320)
T PRK13631 254 ILK 256 (320)
T ss_pred EEE
Confidence 975
No 78
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-47 Score=361.85 Aligned_cols=205 Identities=37% Similarity=0.610 Sum_probs=173.6
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999963 479999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|+||++.+|.+ |++||+.++.... ..++.. ..+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIR-----ARVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998874 9999998753211 111111 1123444444 566666677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999998874 37899999999998765 99999999999976
No 79
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8.9e-47 Score=356.52 Aligned_cols=200 Identities=35% Similarity=0.544 Sum_probs=181.1
Q ss_pred EEEEeEEEECCCCCC--CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 261 IELKDIYFSYPSRPG--EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 261 i~~~~v~~~y~~~~~--~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
++++||+++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999964311 3699999999999999999999999999999999999999999999998 6
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 339 IGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 339 i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
++|+||++.+|++|++||+.++.. .++++..++++..++.+++..+|.|+++.+++.+..||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998753 3455677778888899999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCE
Q 048556 419 RILLLDEATSALDAESERVVQEA-LDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGK 474 (478)
Q Consensus 419 ~ililDEpts~LD~~~~~~i~~~-l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~ 474 (478)
+++||||||++||+.+.+.+.+. ++... +++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999999999999999884 55553 4689999999999988899999999985
No 80
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=5.1e-47 Score=366.08 Aligned_cols=212 Identities=28% Similarity=0.497 Sum_probs=180.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcce
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 339 (478)
++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 469999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCHHHH-------HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDGASIAEI-------MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~-------~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
+|+||++.+|++ |++||+.++........+ ........+.++++.+ |++........+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999987 999999876432111000 0011122345566666 777777888899999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 223 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA 223 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 99999999999999999999999999999998875 57899999999999866 99999999999875
No 81
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-47 Score=360.66 Aligned_cols=199 Identities=30% Similarity=0.497 Sum_probs=173.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.|+++|++|+|.+ . ++|+||||++++|++++|+||||||||||+|+++|+.+|++|+|.++|.+..+... +.+|
T Consensus 4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 4899999999963 2 69999999999999999999999999999999999999999999999998766532 4689
Q ss_pred EEEecCC---CCCcccHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 048556 340 GLVSQEP---VLFTSSIKDNINYGKDGA----------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ 406 (478)
Q Consensus 340 ~~v~Q~~---~lf~~ti~eNl~~~~~~~----------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q 406 (478)
|||||.. +-|+-||+|-+.+|+... +.+++.+|++.+++.++.. ..-.+|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-----------r~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-----------RQIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-----------CcccccCcHHHH
Confidence 9999955 458899999999985322 1367888888888776542 345689999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556 407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475 (478)
Q Consensus 407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i 475 (478)
|+.|||||+.+|++|+|||||+|+|+.++..|.+.|+++++ ++||++|||+++.+.. +|+|+.|+..-+
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~ 217 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI 217 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeE
Confidence 99999999999999999999999999999999999999874 7999999999998766 999999976543
No 82
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=6.6e-47 Score=361.67 Aligned_cols=209 Identities=29% Similarity=0.528 Sum_probs=176.3
Q ss_pred EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH---hh
Q 048556 261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW---IR 336 (478)
Q Consensus 261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r 336 (478)
++++||+++|++.. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 146999999999999999999999999999999999999999999999999998776544 23
Q ss_pred -cceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 337 -GKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 337 -~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
+.++|+||++.+|+. |++||+.++.. ....++.. ..+.++++.+ |++.........||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-----ERAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 679999999999965 99999987421 11111111 1123455554 6766677778899999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEe
Q 048556 413 AILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLV 476 (478)
Q Consensus 413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~ 476 (478)
|++++|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+..+|++++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999998875 368999999999999889999999999986
No 83
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.5e-47 Score=359.53 Aligned_cols=199 Identities=29% Similarity=0.498 Sum_probs=169.3
Q ss_pred EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEE
Q 048556 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL 341 (478)
Q Consensus 262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 341 (478)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 368999999631 479999999999999999999999999999999999999999999999998754 456778999
Q ss_pred EecCC--CCCcccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 342 VSQEP--VLFTSSIKDNINYGKDGAS--IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 342 v~Q~~--~lf~~ti~eNl~~~~~~~~--~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
+||++ .+|..|++||+.++.+... .+++.++++.. |++.........||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDL-----------DLYALKERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHc-----------CCchhcCCCchhCCHHHHHHHHHHHHHHhC
Confidence 99997 4677899999998653322 12334444443 444445556678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999998874 57899999999999875 9999999999985
No 84
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.5e-46 Score=354.25 Aligned_cols=199 Identities=34% Similarity=0.609 Sum_probs=177.4
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
+.++++|++++|++. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+..++|+.
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999742 2479999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 339 IGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 339 i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
++|+||++.+|++|++||+.+..+ .+.+++.++++ ++.....|||||+||++||||++.+|
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999987543 33333333222 34568899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 419 RILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 419 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~ 203 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKE 203 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEe
Confidence 99999999999999999999999998877889999999999988899999999999875
No 85
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.4e-47 Score=361.06 Aligned_cols=209 Identities=38% Similarity=0.635 Sum_probs=181.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC-CCCHHHhhcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK-EFQLKWIRGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~-~~~~~~~r~~ 338 (478)
-++++|++|+|+++ .++|+|+||+|++||.++|+||||||||||+++++|+++|++|.|.++|.++. +.+..++|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 37899999999854 58999999999999999999999999999999999999999999999999988 4788899999
Q ss_pred eEEEecCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556 339 IGLVSQEP--VLFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 339 i~~v~Q~~--~lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
+|||+|+| .+|..||.|.+.||..+ .+.+++.+..+ +.+... |+.........+||||||||+|||.+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~-----~~l~~v--gl~~~~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVA-----EALELV--GLEELLDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHH-----HHHHHc--CchhhccCCccccCCcceeeHHhhHHH
Confidence 99999999 68999999999999754 33444333221 122222 444455667799999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
..+|+++|||||||+||+...+.+++.++++.+ ++|+|++||+++.+.. |||+++|++|+++.
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~ 219 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILA 219 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEee
Confidence 999999999999999999999999999999874 4799999999999877 99999999999864
No 86
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-46 Score=361.68 Aligned_cols=211 Identities=27% Similarity=0.471 Sum_probs=178.6
Q ss_pred cEEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH---h
Q 048556 260 DIELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW---I 335 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~ 335 (478)
-++++||+|.|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997421 147999999999999999999999999999999999999999999999999998877643 3
Q ss_pred h-cceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 336 R-GKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 336 r-~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
+ +.++|+||++.+|+. |++||+.++.. ....++.. ..+.+.++.+ |++........+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-----SRALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 679999999999976 99999987421 11222211 1123444544 666667777899999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
||++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+..+|++++|++|++++
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~ 225 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTA 225 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEE
Confidence 99999999999999999999999999999999874 3689999999999999999999999999975
No 87
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.2e-46 Score=359.09 Aligned_cols=209 Identities=26% Similarity=0.505 Sum_probs=176.9
Q ss_pred EEEEeEEEECCCCCC-CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 261 IELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~~~-~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
++++|++++|++... .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++++.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974211 169999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+|+||++.+|++ |++||+.+.... .+.++..+ .+.++++.+ |++..+.....+||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999999986 999999864321 12222111 123444544 66666677889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 999999999999999999999999998875 47899999999998765 99999999999976
No 88
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-46 Score=365.85 Aligned_cols=208 Identities=32% Similarity=0.492 Sum_probs=177.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC---CCccEEEECCeecCCCCHHHhh
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGVNLKEFQLKWIR 336 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~r 336 (478)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 479999999999999999999999999999999999984 6899999999999888877888
Q ss_pred cceEEEecCCCCCcccHHHHHhcCCCCC--------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556 337 GKIGLVSQEPVLFTSSIKDNINYGKDGA--------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~~ti~eNl~~~~~~~--------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
+.++|+||++.+|+.|++||+.++.... ..+++.++++..++.+++ .+...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-------KDKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-------hHHhcCCcccCCHHHHHHH
Confidence 8999999999999999999998753110 111233333433333222 2345667889999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+||||++++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 221 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIE 221 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEE
Confidence 9999999999999999999999999999999999988778899999999998765 99999999999975
No 89
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-47 Score=379.78 Aligned_cols=202 Identities=33% Similarity=0.572 Sum_probs=177.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++||+++|. +..+++|+||+|++||+++++|||||||||++++|+|+.+|++|+|.+||+++.+++++ +|.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 589999999996 35799999999999999999999999999999999999999999999999999999877 5789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC---CCCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKD---GASIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
++|+|+--||+. ||+||+.||-. ...++ ++.++++.+++.++- ..++.+|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-----------~R~p~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----------DRKPHQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-----------hhChhhhChHHHHHHHHH
Confidence 999999999997 99999999864 11222 455566666555544 455689999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||..+|++|+||||.|+||.+-+.....-++++. .+.|.|+|||+-++.-. +|||+||++|+|.+
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q 217 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQ 217 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceee
Confidence 99999999999999999999999999999888764 37899999999887554 99999999999864
No 90
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-47 Score=351.48 Aligned_cols=208 Identities=33% Similarity=0.566 Sum_probs=179.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC---HHHhh
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ---LKWIR 336 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~~r 336 (478)
.|+++||+.+||+ ++++|+||||+|++||.|+|+||||||||||+|.|.|+.+|++|+|.+||.++..+. ...+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999985 468999999999999999999999999999999999999999999999999998877 45568
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556 337 GKIGLVSQEPVLFTS-SIKDNINYGKDGA-----------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ 404 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~-----------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 404 (478)
+++||++|++.|-+. |+.+|+..|.-.+ +.++-..| .+.++.+ |+-.....+..+|||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~A------l~aLerv--gi~~~A~qra~~LSGGQ 152 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQA------LDALERV--GILDKAYQRASTLSGGQ 152 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHH------HHHHHHc--CcHHHHHHHhccCCcch
Confidence 889999999999986 9999999886432 22322222 2223333 55555557789999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+||++|||||+.+|++++-|||+++|||.+.+++++.|++.. .+.|+|+.-|.++.+++ ||||+-|++|+|+.
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE
Confidence 999999999999999999999999999999999999999885 46899999999999876 99999999999974
No 91
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-46 Score=370.55 Aligned_cols=211 Identities=31% Similarity=0.525 Sum_probs=177.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++|++++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999642224699999999999999999999999999999999999999999999999999887877888999
Q ss_pred EEEecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 340 GLVSQEPV--LFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 340 ~~v~Q~~~--lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+|++|++. ++..|++||+.++... .+.++..+. +.+.++.+ |++........+|||||+||++|||||+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LSgGq~qrv~lAral~ 156 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKER-----VNEALELV--GMQDFKEREPARLSGGQKQRVAIAGAVA 156 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 4567999999986422 222222111 12233333 4555555667899999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++
T Consensus 157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~ 220 (279)
T PRK13650 157 MRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVES 220 (279)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999998753 789999999999988899999999999874
No 92
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.5e-46 Score=359.36 Aligned_cols=208 Identities=28% Similarity=0.473 Sum_probs=174.6
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcce
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 339 (478)
|+++||+++|++ .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..+. ++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999963 479999999999999999999999999999999999999999999999999988776554 6779
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
+|+||++.+|++ |++||+.++.......+..+ .+.+.++.++ +++........+||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKA-----RLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHH-----HHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999987 99999998653222111111 1122222221 2344556677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 419 RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 419 ~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL 212 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE
Confidence 9999999999999999999999998875 46899999999998766 99999999999875
No 93
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.1e-46 Score=358.31 Aligned_cols=201 Identities=30% Similarity=0.498 Sum_probs=170.2
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH---Hhhc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK---WIRG 337 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r~ 337 (478)
++++|+++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 24799999999999999999999999999999999999999999999999999876543 4678
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556 338 KIGLVSQEPVLFT-SSIKDNINYGKDG--AS----IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI 410 (478)
Q Consensus 338 ~i~~v~Q~~~lf~-~ti~eNl~~~~~~--~~----~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l 410 (478)
.++|+||++.+|. .|++||+.++... .. .+++.++++..+ +.........+|||||+||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVG-----------LEHKADAFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHHH
Confidence 8999999999997 5999999875211 11 123333333333 3333444567899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGK 474 (478)
Q Consensus 411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~ 474 (478)
||||+++|+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999875 47899999999999886 99999999985
No 94
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-46 Score=363.06 Aligned_cols=213 Identities=34% Similarity=0.578 Sum_probs=176.8
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC---HHHhhc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ---LKWIRG 337 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~~r~ 337 (478)
++++|++++|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999963 147999999999999999999999999999999999999999999999999988776 456788
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCCC--HHHH---HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 338 KIGLVSQEPVLFT-SSIKDNINYGKDGAS--IAEI---MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 338 ~i~~v~Q~~~lf~-~ti~eNl~~~~~~~~--~~~~---~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
.++|+||++.+|. .|++||+.++..... ...+ ........+.+.++.+ |+.......+.+||||||||++||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHH
Confidence 9999999999887 599999987542110 0000 0000111223445544 566666778899999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++.+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF 225 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999875 37899999999999884 99999999999875
No 95
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-46 Score=355.98 Aligned_cols=201 Identities=28% Similarity=0.515 Sum_probs=172.5
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+++|++|.|++ +++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+++.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 478999999963 47999999999999 99999999999999999999999999999999999988766 66788999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKD--GASI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~--~~~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
|+||++.+|.+ |++||+.+... ..+. +++.++++.. |++........+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELV-----------NLGDRAKKKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----------CCHHHHhCchhhCCHHHHHHHHHHHH
Confidence 99999999986 99999986421 1111 2233333333 33333445567899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++.+|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999988767999999999999865 99999999999976
No 96
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.5e-46 Score=356.64 Aligned_cols=205 Identities=39% Similarity=0.649 Sum_probs=173.5
Q ss_pred EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEE
Q 048556 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL 341 (478)
Q Consensus 262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 341 (478)
+++|++++|++. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999642 2479999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 342 VSQEPV--LFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 342 v~Q~~~--lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
+||++. ++..|++||+.++... .+..+..+ .+.++++.+ |++..+.....+||||||||++|||||+++
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999984 5677999999875321 12222111 123344444 555556677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGK 474 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~ 474 (478)
|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999988753 6899999999999887 99999999985
No 97
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.1e-46 Score=362.12 Aligned_cols=213 Identities=30% Similarity=0.545 Sum_probs=176.1
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH---HHhhc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL---KWIRG 337 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 337 (478)
++++|++++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++. ..+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 679999999962 2469999999999999999999999999999999999999999999999999877654 34678
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCCC--HHHH---HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGKDGAS--IAEI---MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~--~~~~---~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
.++|+||++.+|+. |++||+.++..... ...+ ........+.++++.+ |++........+||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence 89999999998874 99999987642110 0000 0000111233445554 666666777899999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVF 226 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 999999999999999999999999999999988742 6899999999999855 99999999999875
No 98
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-46 Score=379.97 Aligned_cols=210 Identities=40% Similarity=0.605 Sum_probs=179.0
Q ss_pred EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH---hh
Q 048556 261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW---IR 336 (478)
Q Consensus 261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r 336 (478)
|+++|++|+|++.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999996211 357999999999999999999999999999999999999999999999999998877544 47
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 337 GKIGLVSQEPVLFT-SSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~-~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
+.++|+||++.+|+ .|++||+.++.. ..+.++..+ .+.++++.+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 88999999999987 599999987632 122222211 223455555 66666677788999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~ 221 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE 221 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999998753 6899999999999876 99999999999975
No 99
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.2e-46 Score=357.80 Aligned_cols=208 Identities=25% Similarity=0.489 Sum_probs=174.4
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++||++.|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+++.++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 4789999999642 257999999999999999999999999999999999999999999999999987643 56678899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFT-SSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~-~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|++|++.+|. .|++||+.++.. ....++..+ .+.++++.+ |+.........+|||||+||++||||++.+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 9999999985 699999987431 112211111 123344443 454445566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 212 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRC 212 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999999999999999999999988777899999999999865 99999999999975
No 100
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.4e-46 Score=354.26 Aligned_cols=210 Identities=31% Similarity=0.476 Sum_probs=186.5
Q ss_pred EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH----HHhhc
Q 048556 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL----KWIRG 337 (478)
Q Consensus 262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~r~ 337 (478)
.+.|++|+|+++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 579999999999999999999999999999999999999999999999998866542 23567
Q ss_pred ceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 338 KIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
.++|++|++.+|+.|++||+.++.+ ...++..++++..++.+.+..+|.|+++.++....+|||||+||++||||++++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999998899999998754 345566777888888888999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHH--HHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCE
Q 048556 418 PRILLLDEATSALDAESERVVQE--ALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGK 474 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~--~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~ 474 (478)
|+++||||||++||+.+.+.+++ .++.+. .+.|+|++||+++.++.||++++|++|.
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999999988 455544 3689999999999998899999999984
No 101
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=2.9e-46 Score=353.99 Aligned_cols=201 Identities=26% Similarity=0.459 Sum_probs=173.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999953 4799999999999999999999999999999999999999999999999988654 45678899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFT-SSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~-~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|+||++.+|+ .|++||+.++.. ..+.+++.++++..++ +........+||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGL-----------KDSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCC-----------HHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999999885 599999987531 1233444544444444 3344455788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999998875 47899999999998865 99999999999876
No 102
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-46 Score=360.20 Aligned_cols=210 Identities=35% Similarity=0.548 Sum_probs=176.9
Q ss_pred EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH---Hhh
Q 048556 261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK---WIR 336 (478)
Q Consensus 261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r 336 (478)
|+++|++++|+++. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999996421 12799999999999999999999999999999999999999999999999998876543 347
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 337 GKIGLVSQEPVLFT-SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~-~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
+.++|+||++.+|. .|++||+.++... .+..+. ...+.++++.+ |++........+|||||+||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI-----EERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 88999999999997 4999999875321 111111 11234455555 66666667778999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIM-I-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++++|+++||||||++||+.+++.+.+.|+++. + ++|+|++||+++.+.. ||++++|++|++++
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE 221 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998875 3 6899999999999866 99999999999975
No 103
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-46 Score=369.18 Aligned_cols=210 Identities=33% Similarity=0.572 Sum_probs=176.8
Q ss_pred EEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC--HHHhh
Q 048556 261 IELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ--LKWIR 336 (478)
Q Consensus 261 i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~--~~~~r 336 (478)
++++||+|+|++.. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999996421 146999999999999999999999999999999999999999999999999997754 35678
Q ss_pred cceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc--ccccCCCCCCChHHHHHHHH
Q 048556 337 GKIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLD--TMVGEHGTQLSGGQKQRIAI 410 (478)
Q Consensus 337 ~~i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~--t~~~~~g~~LSgGq~Qrl~l 410 (478)
+.++||||++ .+|+.|++||+.++.. ..+.++..+. +.+.++.+ |+. +........||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 5778899999997632 2233333221 12333333 554 45667789999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVR-NADLIAVIHQGKLVE 477 (478)
Q Consensus 411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~ 477 (478)
||||+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~ 225 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL 225 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999998753 689999999999875 599999999999875
No 104
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-46 Score=360.15 Aligned_cols=206 Identities=37% Similarity=0.646 Sum_probs=177.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|++|+|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4889999999963 4699999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 340 ~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
+|+||++.+|+.|++||+.++......++ ..+.++++.+ |++ ........+|||||+||++||||++++|
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p 150 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKN-------VDVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNP 150 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHH-------HHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999987642111110 1122344443 453 3455678899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 419 RILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 419 ~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 151 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (241)
T PRK14250 151 EVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVE 212 (241)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999998753 7899999999999875 99999999999875
No 105
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-46 Score=361.43 Aligned_cols=205 Identities=34% Similarity=0.543 Sum_probs=174.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999963 479999999999999999999999999999999999999999999999999876543 257899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDGA------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~~------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
|+||++.+|.. |++||+.++.... ..++.. ..+.++++.+ |++........+|||||+||++||||
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~a 150 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARA 150 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 99999999864 9999998764211 111111 1223445554 56656667778999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (239)
T cd03296 151 LAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQ 217 (239)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 9999999999999999999999999999988753 6899999999998765 99999999999875
No 106
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-46 Score=367.18 Aligned_cols=209 Identities=32% Similarity=0.586 Sum_probs=176.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++|++|.|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 3899999999963 24699999999999999999999999999999999999999999999999999888878888899
Q ss_pred EEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 340 GLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 340 ~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+|+||++ .++..|++||+.++.. ..+.++..+ .+.++++.+ |+..........|||||+||++|||||+
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgG~~qrv~laraL~ 154 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVER-----RVEEALKAV--RMWDFRDKPPYHLSYGQKKRVAIAGVLA 154 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHHC--CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999998 5778899999998632 122222111 112233332 4444445556799999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~ 477 (478)
.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 218 (274)
T PRK13647 155 MDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA 218 (274)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999998875 4789999999999885 599999999999875
No 107
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=4.9e-46 Score=357.18 Aligned_cols=211 Identities=35% Similarity=0.515 Sum_probs=174.6
Q ss_pred EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH---HHhh
Q 048556 261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL---KWIR 336 (478)
Q Consensus 261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~---~~~r 336 (478)
++++||+++|++.+ ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996421 1269999999999999999999999999999999999999999999999999987763 5678
Q ss_pred cceEEEecCC--CCCc-ccHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 048556 337 GKIGLVSQEP--VLFT-SSIKDNINYGKDGA---SIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIA 409 (478)
Q Consensus 337 ~~i~~v~Q~~--~lf~-~ti~eNl~~~~~~~---~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~ 409 (478)
+.++|++|++ .++. .|++||+.++.... ..++..+.. ..++++.+ |+. ........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH----HHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 8999999999 3454 59999998642111 111111100 12344444 553 4567778999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||||+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 99999999999999999999999999999999998753 6899999999999874 99999999999875
No 108
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-46 Score=378.86 Aligned_cols=207 Identities=29% Similarity=0.490 Sum_probs=175.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|++++|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999942 24799999999999999999999999999999999999999999999999999887754 4789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+||||++.+|+. |++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++|||||++
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~QRvalARAL~~ 151 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEE-----RVAEAARIL--ELEPLLDRKPRELSGGQRQRVAMGRAIVR 151 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 999999987431 22222211 122333333 55555566678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~ 215 (356)
T PRK11650 152 EPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQ 215 (356)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999988754 6899999999997765 99999999999975
No 109
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-46 Score=357.38 Aligned_cols=205 Identities=35% Similarity=0.531 Sum_probs=171.1
Q ss_pred EEEEeEEEECCCCCC-CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 261 IELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~~~-~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
++++|+++.|++... +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 478999999964111 479999999999999999999999999999999999999999999999998863 36789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFT-SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~-~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+|+||++.+|+ .|++||+.++... .+.++.. ..+.++++.+ |++........+||||||||++|||||+.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999998 5999999875321 1111111 1123444444 55555666678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEe--CCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIH--QGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~--~G~i~~ 477 (478)
+|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|+ +|++++
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 999999999999999999999999998874 36899999999998765 99999999 799986
No 110
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1e-45 Score=353.86 Aligned_cols=208 Identities=28% Similarity=0.479 Sum_probs=174.3
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH---hhc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW---IRG 337 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r~ 337 (478)
++++|+++.|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 689999999942 247999999999999999999999999999999999999999999999999988766443 678
Q ss_pred ceEEEecCCCCC-cccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556 338 KIGLVSQEPVLF-TSSIKDNINYGK--DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 338 ~i~~v~Q~~~lf-~~ti~eNl~~~~--~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
.++|+||++.+| ..|++||+.++. ...++++..+. +.++++.+ |+.........+||||||||++||||+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR-----VSAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 899999999875 459999998753 12233332221 12233333 454455566789999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999875 46899999999999877 89999999999864
No 111
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-46 Score=363.20 Aligned_cols=208 Identities=32% Similarity=0.519 Sum_probs=175.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~ 332 (478)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 469999999999999999999999999999999999975 589999999999864 345
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCC--C-C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--A-S----IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~-~----~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
..+|+.++|+||++.+|+.|++||+.++... . . .+++.++++..++.+++ .+.++....+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHH
Confidence 5678899999999999989999999875311 1 1 12333334333332221 2345667889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIE 228 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999988667899999999998865 99999999999875
No 112
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=8.2e-46 Score=360.18 Aligned_cols=207 Identities=34% Similarity=0.532 Sum_probs=174.8
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC-----ccEEEECCeecCCC--CHH
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGVNLKEF--QLK 333 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-----~G~i~~~g~~~~~~--~~~ 333 (478)
++++||+++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 36999999999999999999999999999999999999998 99999999998753 355
Q ss_pred HhhcceEEEecCCCCCcccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCcc----ccccCCCCCCChHHHH
Q 048556 334 WIRGKIGLVSQEPVLFTSSIKDNINYGKDG---ASIAEIMAAAELANAAKFIDSLPQGLD----TMVGEHGTQLSGGQKQ 406 (478)
Q Consensus 334 ~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~---~~~~~~~~a~~~~~~~~~i~~lp~g~~----t~~~~~g~~LSgGq~Q 406 (478)
.+++.++|+||++.+|+.|++||+.++... .+.++..+ .+.+.++.+ |+. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDE-----IVEESLKKA--ALWDEVKDRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHH-----HHHHHHHHc--CCCcchhhHhhCCcccCCHHHHH
Confidence 678899999999999999999999875321 12222111 122233333 443 4556778899999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 223 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE 223 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999988766899999999998765 99999999999875
No 113
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=4.7e-46 Score=358.39 Aligned_cols=207 Identities=25% Similarity=0.463 Sum_probs=177.6
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcce
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 339 (478)
++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.+.+ ++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 469999999999999999999999999999999999999999999999999887766553 5679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+|+||++.+|++ |++||+.++.+.. ..++.. ..+.++++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999987 9999998754221 111211 1234555555 67777778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 213 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA 213 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 999999999999999999999999998875 46899999999987665 99999999999864
No 114
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-46 Score=368.92 Aligned_cols=210 Identities=27% Similarity=0.510 Sum_probs=176.5
Q ss_pred EEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC----CCHHH
Q 048556 261 IELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE----FQLKW 334 (478)
Q Consensus 261 i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~----~~~~~ 334 (478)
|+++|++|+|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.. .+..+
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996321 1359999999999999999999999999999999999999999999999999853 34567
Q ss_pred hhcceEEEecCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 048556 335 IRGKIGLVSQEP--VLFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIA 409 (478)
Q Consensus 335 ~r~~i~~v~Q~~--~lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~ 409 (478)
+|+.++||+|+| .+|..|+.||+.++... .+.++..+ .+.+.++.+ |+. ........+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 889999999988 78889999999987432 22333221 123344444 553 3456778999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556 410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLIAVIHQGKLVE 477 (478)
Q Consensus 410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~ 477 (478)
|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~ 224 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIIS 224 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999998875 4789999999999885 499999999999975
No 115
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=4.9e-46 Score=344.02 Aligned_cols=176 Identities=35% Similarity=0.673 Sum_probs=164.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|+++ ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999743 23699999999999999999999999999999999999999999999999988766 566788999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556 341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420 (478)
Q Consensus 341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i 420 (478)
|+||++.+|+.|++||+ ...|||||+||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 568999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 421 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+||||||++||+.+++.+++.|++..+++|+|++||+++.++.||++++|++|++++
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~ 176 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIM 176 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998866789999999999998899999999999976
No 116
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=4.1e-46 Score=354.36 Aligned_cols=206 Identities=31% Similarity=0.515 Sum_probs=172.6
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH---HHhhc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL---KWIRG 337 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~---~~~r~ 337 (478)
++++|+++.|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999642 469999999999999999999999999999999999999999999999999877654 34678
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
.++|+||++.+|+. |++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++||||+
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELV--GLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 89999999999985 999999875321 12222111 122333333 455455556779999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i 475 (478)
+++|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999874 47899999999999876 899999999975
No 117
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-46 Score=376.94 Aligned_cols=206 Identities=31% Similarity=0.520 Sum_probs=175.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.+
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999877643 5789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+||+|++.+|+. |++||+.++... .+.++..+. +.+.++.+ |+.........+|||||+||++|||||++
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~-----v~~~l~~~--gl~~~~~r~~~~LSgGq~QRVaLARaL~~ 153 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQR-----VKEALELV--DLAGFEDRYVDQISGGQQQRVALARALIL 153 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999986 999999987431 222222211 12233333 45555566678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|+++|||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 154 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~ 217 (351)
T PRK11432 154 KPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQ 217 (351)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999998754 6899999999998755 99999999999975
No 118
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-46 Score=362.41 Aligned_cols=209 Identities=34% Similarity=0.548 Sum_probs=176.7
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CC
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQ 331 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~ 331 (478)
+.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 46999999999963 469999999999999999999999999999999999986 579999999999853 45
Q ss_pred HHHhhcceEEEecCCCCCcccHHHHHhcCCC---CCCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556 332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKD---GASIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ 404 (478)
Q Consensus 332 ~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~---~~~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 404 (478)
...+|+.++|+||++.+|+.|++||+.++.. ..+.+ +++++++..++.+ ++...+.+...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN-------EVKDKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCh-------hhHHHHhcCCCCCCHHH
Confidence 5677889999999999999999999987532 12222 2333333333221 22345667788999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 235 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIE 235 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999988667899999999998865 99999999999875
No 119
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.1e-45 Score=355.02 Aligned_cols=212 Identities=29% Similarity=0.415 Sum_probs=175.9
Q ss_pred cEEEEeEEEECCCCCC-CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh---
Q 048556 260 DIELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI--- 335 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~-~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~--- 335 (478)
-++++|++++|++... .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974211 259999999999999999999999999999999999999999999999999988765432
Q ss_pred -hcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 336 -RGKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 336 -r~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
++.++|+||++.+|++ |++||+.++.. ....++. ...+.++++.+ |++..+......||||||||++||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS-----RNGAKALLEQL--GLGKRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHH
Confidence 3679999999999886 99999986421 1111111 11123344444 454455556779999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM-I-NRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
|||+.+|+++||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.++.||++++|++|++++.
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999998874 3 6899999999999888999999999999864
No 120
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=4.4e-46 Score=353.88 Aligned_cols=205 Identities=34% Similarity=0.578 Sum_probs=174.6
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC--CCHHHhhcc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE--FQLKWIRGK 338 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 338 (478)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999963 479999999999999999999999999999999999999999999999998853 345567889
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556 339 IGLVSQEPVLFT-SSIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 339 i~~v~Q~~~lf~-~ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
++|+||++.+|+ .|++||+.++.. ..+.++..+ .+.++++.+ |++..+.....+|||||+||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999997 599999987532 122222111 123455555 666667777899999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i 475 (478)
+++|+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999875 46899999999999865 999999999975
No 121
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-46 Score=360.10 Aligned_cols=208 Identities=34% Similarity=0.558 Sum_probs=177.6
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999641 46999999999999999999999999999999999999999999999999998888777888999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccc--cccCCCCCCChHHHHHHHHHHHHc
Q 048556 341 LVSQEPVLFT-SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDT--MVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 341 ~v~Q~~~lf~-~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t--~~~~~g~~LSgGq~Qrl~lARall 415 (478)
|+||++.+|+ .|++||+.++... .+.++. ...+.++++.+ |+.. .....+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999996 5999999875321 111111 12234555555 5553 566778999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 216 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ 216 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999998753 6899999999998655 99999999999975
No 122
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=6.9e-46 Score=352.67 Aligned_cols=205 Identities=29% Similarity=0.526 Sum_probs=173.4
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999964 4799999999999999999999999999999999999999999999999998765533 46799
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFT-SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~-~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|+||++.+|. .|++||+.++... ...++..+ .+.++++.+ |++........+||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999986 4999999875321 12222111 123344444 566566677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~ 211 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEe
Confidence 999999999999999999999999988753 6899999999998776 99999999999986
No 123
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=360.77 Aligned_cols=208 Identities=31% Similarity=0.463 Sum_probs=174.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCC--CCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKE--FQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~ 332 (478)
-++++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5899999999963 4699999999999999999999999999999999999997 48999999998853 344
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCCC---C----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA---S----IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~---~----~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
..+|+.++|+||++.+|..|++||+.++.... . ++++.++++..++.+.+ .......+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-------KDKLNTNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-------HHHHhCCcccCCHHHH
Confidence 56788999999999999899999998764211 1 12233334443332211 2233456789999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~ 229 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE 229 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999998767899999999998765 99999999999975
No 124
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-46 Score=367.32 Aligned_cols=210 Identities=30% Similarity=0.551 Sum_probs=178.6
Q ss_pred EEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC----CHHH
Q 048556 261 IELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF----QLKW 334 (478)
Q Consensus 261 i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~ 334 (478)
++++|++|+|++.+ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 13699999999999999999999999999999999999999999999999998653 3456
Q ss_pred hhcceEEEecCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHH
Q 048556 335 IRGKIGLVSQEP--VLFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIA 409 (478)
Q Consensus 335 ~r~~i~~v~Q~~--~lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~ 409 (478)
+|+.++||||++ .+|+.|++||+.++... .+.++..+. +.++++.+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999987 58888999999986422 233333221 24455555 7763 556788999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556 410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVR-NADLIAVIHQGKLVE 477 (478)
Q Consensus 410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~ 477 (478)
|||||+.+|+++||||||++||+.++..+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999875 3789999999999875 599999999999975
No 125
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-46 Score=365.82 Aligned_cols=210 Identities=31% Similarity=0.549 Sum_probs=177.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+++.+
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999642 34699999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEEecCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 340 GLVSQEP--VLFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 340 ~~v~Q~~--~lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+|+||++ .++..|++||+.++... .+.++..+ .+.+.+..+ |++..+......|||||+||++|||||+
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~laral~ 156 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE-----RVDQALRQV--GMEDFLNREPHRLSGGQKQRVAIAGVLA 156 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHH-----HHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 45567999999886321 12222111 112223322 4444455566799999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
.+|+++||||||++||+.+++.+++.|+++.+ ++|+|++||+++.+..||+|++|++|++++
T Consensus 157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~ 220 (279)
T PRK13635 157 LQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILE 220 (279)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999998764 689999999999988899999999999875
No 126
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=6.9e-46 Score=377.09 Aligned_cols=206 Identities=31% Similarity=0.496 Sum_probs=179.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+||+|++.+|+. |++||+.|+... .+.++.. ..+.++++.+ |++......+.+|||||+||++|||||+.
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 999999987432 1222221 1234555555 67777778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|++++||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~ 215 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQ 215 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999988753 6899999999998755 99999999999975
No 127
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=8.8e-46 Score=340.79 Aligned_cols=172 Identities=38% Similarity=0.695 Sum_probs=161.7
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.+.+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999742 246999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556 341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420 (478)
Q Consensus 341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i 420 (478)
|++|++.+|++|++||+ |||||+||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 048556 421 LLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKL 475 (478)
Q Consensus 421 lilDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i 475 (478)
+||||||++||+.+++.+.+.|+++. +++|+|++||+++.++.||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 47899999999999988999999999974
No 128
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.1e-45 Score=356.88 Aligned_cols=206 Identities=29% Similarity=0.525 Sum_probs=177.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 47999999999999999999999999999999999999999999999999987766544 45899
Q ss_pred EEecCCCCC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLF-TSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf-~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|+||++.++ ..|++||+.++... .+.++.. ..+.++++.+ |++........+|||||+||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999885 46999999875321 1222211 1234455555 777777888899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+..||++++|++|++++
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~ 212 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLA 212 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEE
Confidence 99999999999999999999999999875 3689999999999988899999999999875
No 129
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=367.29 Aligned_cols=210 Identities=31% Similarity=0.533 Sum_probs=176.6
Q ss_pred EEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC----CCHHH
Q 048556 261 IELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE----FQLKW 334 (478)
Q Consensus 261 i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~----~~~~~ 334 (478)
++++|++|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 1469999999999999999999999999999999999999999999999999863 34556
Q ss_pred hhcceEEEecCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 048556 335 IRGKIGLVSQEP--VLFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIA 409 (478)
Q Consensus 335 ~r~~i~~v~Q~~--~lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~ 409 (478)
+|+.++||||++ .+|+.|++||+.++... .+.++..+. +.+.++.+ |++ .........||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK-----AREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999997 68888999999986421 233333221 23344444 564 3446678899999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||||+.+|+++||||||++||+.+...+.+.|+++.+ +.|+|++||+++.+.. ||||++|++|++++
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL 226 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999988753 6899999999998765 99999999999875
No 130
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=9.5e-46 Score=370.09 Aligned_cols=207 Identities=25% Similarity=0.455 Sum_probs=174.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+.+
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5899999999963 47999999999999999999999999999999999999999999999999987654 3568899
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+|+||++.+|.. |++||+.+.... .+..+..+. +.+.++.+ |+.........+||||||||++|||||++
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFA--KLENKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 999999999874 999999864321 222222211 12333332 44444445567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|++++|||||++||+.+++.+++.|+++. +++|+|++||+++.++. ||+|++|++|++++
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~ 218 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIA 218 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999875 46899999999999876 99999999999875
No 131
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-46 Score=351.80 Aligned_cols=203 Identities=25% Similarity=0.484 Sum_probs=173.5
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ..++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 479999999999999999999999999999999999999999999999988753 4577899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|+||++.+|++ |++||+.++.. .....+. ...+.++++.+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHH-----HHHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999999986 99999987531 1111111 11234555555 666666777889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 99999999999999999999999998875 46899999999998865 99999999999876
No 132
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=362.53 Aligned_cols=209 Identities=34% Similarity=0.537 Sum_probs=176.0
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCC--CC
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKE--FQ 331 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~--~~ 331 (478)
+.|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 18 ~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 18 IKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred ceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 46999999999963 4799999999999999999999999999999999999975 89999999999864 34
Q ss_pred HHHhhcceEEEecCCCCCcccHHHHHhcCCC--CC--CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556 332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GA--SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG 403 (478)
Q Consensus 332 ~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~--~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 403 (478)
...+|+.++|+||++.+|+.|++||+.++.. .. +. +++.++++..++.+.+ .......+.+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHH
Confidence 5567889999999999998899999987531 10 11 2233333333332211 23455678899999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~ 242 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVE 242 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999988767899999999999865 89999999999975
No 133
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-45 Score=352.82 Aligned_cols=206 Identities=25% Similarity=0.441 Sum_probs=171.9
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 478999999963 4799999999999999999999999999999999999999999999999988653 356678899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|+||++.+|+. |++||+.++.. ..+.++..+ .+.++++.+ |++........+||||||||++||||++.+
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~ 149 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRE-----RIDELLDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHR 149 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999886 99999987421 111111111 122334443 444444556689999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~ 212 (220)
T cd03265 150 PEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212 (220)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 999999999999999999999999988753 6899999999998876 99999999999975
No 134
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.4e-45 Score=355.82 Aligned_cols=212 Identities=28% Similarity=0.488 Sum_probs=179.5
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcce
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 339 (478)
++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 469999999999999999999999999999999999999999999999999887776543 5579
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCC-H-HH---HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDGAS-I-AE---IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~~-~-~~---~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
+|+||++.+|++ |++||+.++..... . .. .........+.++++.+ |++.........|||||+||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999987 99999988642110 0 00 00011112234555555 67767778889999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~ 222 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLA 222 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEe
Confidence 99999999999999999999999999999988767899999999999876 99999999999875
No 135
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.8e-45 Score=373.97 Aligned_cols=205 Identities=35% Similarity=0.552 Sum_probs=175.6
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++...+. .++.++
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999977654 357899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDG------ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~------~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
||+|++.+|+. |++||+.++... .+.++..+ .+.+.++.+ |++........+|||||+||++||||
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalArA 150 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALARA 150 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 99999999986 999999987431 12222211 123344444 55555667788999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+++|+++||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 151 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~ 217 (353)
T PRK10851 151 LAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQ 217 (353)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999998764 6899999999998766 99999999999975
No 136
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-45 Score=357.88 Aligned_cols=208 Identities=32% Similarity=0.485 Sum_probs=174.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCCCHHH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEFQLKW 334 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~~~~~ 334 (478)
.++++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 3889999999963 4699999999999999999999999999999999999974 6999999999998888778
Q ss_pred hhcceEEEecCCCCCc-ccHHHHHhcCCCCC----CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 335 IRGKIGLVSQEPVLFT-SSIKDNINYGKDGA----SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 335 ~r~~i~~v~Q~~~lf~-~ti~eNl~~~~~~~----~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
+|+.++|+||++.+|. .|++||+.++.... .. +++.++++..++.+. ++........+|||||+
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDE-------VKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcc-------hhhhhcCCcccCCHHHH
Confidence 8899999999998664 69999998753210 11 123333333332211 12344566789999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence 9999999999999999999999999999999999999988767899999999998764 99999999999865
No 137
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.9e-45 Score=353.85 Aligned_cols=207 Identities=26% Similarity=0.487 Sum_probs=173.5
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH-hhcce
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW-IRGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 339 (478)
++++||++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999963 47999999999999999999999999999999999999999999999999998777554 46789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
+|+||++.+|+. |++||+.++.......+- +. ..+.++.+ ++++........+|||||+||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~-~~-----~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSR-KI-----PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchH-HH-----HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999987 999999876422211110 00 11122221 12344556678899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 419 RILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 419 ~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+++||||||++||+.+++.+.+.|++..+ ++|+|++||+++.+.. ||+++++++|++++
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~ 212 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA 212 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999988754 6899999999999886 99999999999875
No 138
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-45 Score=357.86 Aligned_cols=199 Identities=33% Similarity=0.506 Sum_probs=171.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999963 46999999999999999999999999999999999999999999999998763 457889
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 340 GLVSQEPVLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 340 ~~v~Q~~~lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
+|++|++.+|+ .|++||+.++.....++++.+ +++.+ |++........+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~---------~l~~~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQ---------ALAAV--GLADRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHH---------HHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999998 599999998642212223333 33333 5555566677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 419 RILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 419 ~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+++||||||++||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999998864 36899999999998765 99999999999875
No 139
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-45 Score=354.76 Aligned_cols=209 Identities=22% Similarity=0.378 Sum_probs=173.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH-hhcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW-IRGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 338 (478)
-++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 3899999999963 47999999999999999999999999999999999999999999999999998877554 5778
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 339 IGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
++|+||++.+|++ |++||+.++......++..+. +.+.+..++ +++.........||||||||++||||++.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999986 999999886422222222211 122222222 122233456789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVL 217 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEe
Confidence 99999999999999999999999998875 47899999999997655 99999999999875
No 140
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=359.64 Aligned_cols=208 Identities=33% Similarity=0.486 Sum_probs=174.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecC--CCCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLK--EFQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~--~~~~ 332 (478)
-++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 4699999999999999999999999999999999999987 4999999999986 4455
Q ss_pred HHhhcceEEEecCCCCCcc-cHHHHHhcCCC--C--CCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556 333 KWIRGKIGLVSQEPVLFTS-SIKDNINYGKD--G--ASIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG 403 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~--~~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 403 (478)
..+|+.++|+||++.+|+. |++||+.++.. . ...+ ++.++++..++.+ .+.........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWD-------EVKDRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCcc-------chhhhhccChhhCCHH
Confidence 5678899999999999986 99999987531 1 0122 2223333322211 1223456678899999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 228 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE 228 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999988667899999999998765 99999999999975
No 141
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-45 Score=363.76 Aligned_cols=209 Identities=26% Similarity=0.507 Sum_probs=177.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC--CCCHHHhhc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK--EFQLKWIRG 337 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~ 337 (478)
-++++|++|+|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 246999999999999999999999999999999999999999999999999984 344567888
Q ss_pred ceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 338 KIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 338 ~i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
.++|+||++ .+|+.|++||+.++.. ..+.++..+. +.+.++.+ |+.........+|||||+||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 5678899999987532 1232222221 22333443 56556667789999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVR-NADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~ 477 (478)
|+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~ 222 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVIL 222 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999988753 789999999999987 499999999999975
No 142
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-45 Score=361.42 Aligned_cols=210 Identities=30% Similarity=0.577 Sum_probs=178.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++|++++|++. ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 35799999999999999999999999999999999999999999999999999877777888999
Q ss_pred EEEecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 340 GLVSQEPV--LFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 340 ~~v~Q~~~--lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+|+||++. ++..|++||+.++... .+.++..+ .+.+.++.+ |++..+.....+|||||+||++|||||+
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999983 4567999999875321 22222221 123344444 5666666777899999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~ 222 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIA 222 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999998753 489999999999988899999999999864
No 143
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.1e-45 Score=355.82 Aligned_cols=207 Identities=32% Similarity=0.551 Sum_probs=177.2
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC--CHHHhhcc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF--QLKWIRGK 338 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~--~~~~~r~~ 338 (478)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...+++.
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 4699999999999999999999999999999999999999999999999998764 33566888
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556 339 IGLVSQEPVLFTS-SIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 339 i~~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
++|+||++.+|.. |++||+.++.. ..+.++.. ..+.++++.+ |++.........|||||+||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE-----KQARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 9999999998874 99999987531 11222211 1224455555 677677778899999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+++|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 216 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAE 216 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999998875 47899999999999865 99999999999975
No 144
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-45 Score=361.01 Aligned_cols=211 Identities=30% Similarity=0.521 Sum_probs=177.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++||+++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999743234699999999999999999999999999999999999999999999999999877777788999
Q ss_pred EEEecCCC--CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 340 GLVSQEPV--LFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 340 ~~v~Q~~~--lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+|++|++. ++..|+.||+.++.. ..+.++..+. +.+.++.+ |+..........|||||+||++|||||+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lAraL~ 156 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR-----VDEALLAV--NMLDFKTREPARLSGGQKQRVAVAGIIA 156 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999984 567799999987532 2233332211 11222222 3444445567899999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~ 220 (277)
T PRK13642 157 LRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIK 220 (277)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999988753 689999999999988899999999999875
No 145
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1e-45 Score=351.57 Aligned_cols=199 Identities=29% Similarity=0.485 Sum_probs=165.4
Q ss_pred EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEE
Q 048556 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL 341 (478)
Q Consensus 262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 341 (478)
+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 46999999999999999999999999999999999999999999999998764 46778999
Q ss_pred EecCCCC---CcccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 342 VSQEPVL---FTSSIKDNINYGKDGA------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 342 v~Q~~~l---f~~ti~eNl~~~~~~~------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
+||++.+ |+.|++||+.++.... ..++. ...+.++++.+ |++........+||||||||++|||
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 145 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKAD-----KAKVDEALERV--GLSELADRQIGELSGGQQQRVLLAR 145 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHH-----HHHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHH
Confidence 9999976 5579999998864311 01111 11123334443 4544455567899999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556 413 AILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475 (478)
Q Consensus 413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i 475 (478)
||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|.+
T Consensus 146 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 146 ALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 9999999999999999999999999999999875 56899999999998866 899999998744
No 146
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.1e-45 Score=375.35 Aligned_cols=195 Identities=34% Similarity=0.535 Sum_probs=168.3
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh----hcceEEEecCCCCCcc
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI----RGKIGLVSQEPVLFTS 351 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~ 351 (478)
+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++..++ |+.++||+|++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 469999999999999999999999999999999999999999999999999999988777 7899999999999986
Q ss_pred -cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 048556 352 -SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428 (478)
Q Consensus 352 -ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts 428 (478)
|++||+.++... .+.++..+ .+.+.++.+ |++...+..+.+||||||||++|||||+.+|+++|||||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~-----~~~~~l~~v--gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKE-----KALELLKLV--GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999999986432 12222211 122333333 56666677788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 429 ALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 429 ~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+||+.+++.+.+.+.++. .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~ 210 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ 210 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe
Confidence 999999999999998874 37899999999998655 99999999999975
No 147
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-45 Score=346.97 Aligned_cols=199 Identities=31% Similarity=0.522 Sum_probs=168.5
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+++|++++|++ .. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 478999999963 22 39999999999999999999999999999999999999999999999877654 357899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC-CC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKD-GA-----SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~-~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
|++|++.+|++ |++||+.++.. .. .++++.++++..+ ++........+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVG-----------LAGLEKRLPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcC-----------CHHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999999986 99999987642 11 1223334444443 4444445567899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 9999999999999999999999999999998753 6899999999999866 99999999999976
No 148
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-45 Score=358.69 Aligned_cols=204 Identities=34% Similarity=0.496 Sum_probs=172.4
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CC
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQ 331 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~ 331 (478)
..++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999963 469999999999999999999999999999999999987 689999999999853 45
Q ss_pred HHHhhcceEEEecCCCCCcccHHHHHhcCCCCC--C---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 048556 332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA--S---IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ 406 (478)
Q Consensus 332 ~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~--~---~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q 406 (478)
..++|+.++|+||++.+|+.|++||+.++.... . ++++.++++..++. .+++........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVW-------DECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCc-------chhhhhhCCCcccCCHHHHH
Confidence 667788999999999999889999999864211 1 12223333333222 23344566778899999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeC
Q 048556 407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQ 472 (478)
Q Consensus 407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~ 472 (478)
|++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 999999999999999999999999999999999999988767899999999998865 999999996
No 149
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.3e-45 Score=373.94 Aligned_cols=207 Identities=31% Similarity=0.508 Sum_probs=178.4
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCc--cEEEECCeecCCCCHHHhh
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA--GEVLIDGVNLKEFQLKWIR 336 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~--G~i~~~g~~~~~~~~~~~r 336 (478)
+.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+.. +
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~--~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH--K 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--H
Confidence 56999999999963 469999999999999999999999999999999999999999 9999999999876653 5
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 337 GKIGLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
+.++||+|++.+|+. |++||+.++... .+.++..+ .+.++++.+ |++........+||||||||++||||
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLARA 151 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIARA 151 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHHH
Confidence 789999999999987 999999986421 22222222 123444444 66666777888999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI---NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~---~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 152 L~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~ 219 (362)
T TIGR03258 152 IAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA 219 (362)
T ss_pred HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999988754 5799999999998765 99999999999975
No 150
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-45 Score=365.96 Aligned_cols=210 Identities=30% Similarity=0.485 Sum_probs=175.1
Q ss_pred EEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC---------
Q 048556 261 IELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE--------- 329 (478)
Q Consensus 261 i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~--------- 329 (478)
|+++|++|+|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997431 1369999999999999999999999999999999999999999999999887532
Q ss_pred ---------------CCHHHhhcceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc
Q 048556 330 ---------------FQLKWIRGKIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLD 390 (478)
Q Consensus 330 ---------------~~~~~~r~~i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~ 390 (478)
.+...+++.++||||+| .+|..|++||+.++.. ..+.++..+. +.+.++.+ |++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELV--GLD 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCC
Confidence 13456788999999986 6788899999998742 2233333221 22344444 564
Q ss_pred -ccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEE
Q 048556 391 -TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLI 467 (478)
Q Consensus 391 -t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i 467 (478)
........+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||||
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 45667889999999999999999999999999999999999999999999998875 4789999999999765 59999
Q ss_pred EEEeCCEEee
Q 048556 468 AVIHQGKLVE 477 (478)
Q Consensus 468 ~vl~~G~i~~ 477 (478)
++|++|++++
T Consensus 236 ~vl~~G~i~~ 245 (305)
T PRK13651 236 IFFKDGKIIK 245 (305)
T ss_pred EEEECCEEEE
Confidence 9999999975
No 151
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.5e-45 Score=377.27 Aligned_cols=204 Identities=26% Similarity=0.483 Sum_probs=177.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++.+++++++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 3889999999963 4799999999999999999999999999999999999999999999999999999888899999
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCC-------C---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556 340 GLVSQEPVL-FTSSIKDNINYGKDGA-------S---IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 340 ~~v~Q~~~l-f~~ti~eNl~~~~~~~-------~---~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
+||+|++.+ |+.|++||+.++...+ + .+++.++++.. |+.........+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~v-----------gl~~~~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERT-----------GVAQFADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHH
Confidence 999999987 4669999999875211 1 12334444444 444444556789999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|||||+++|++|||||||++||+.++..+++.|+++. +++|+|++||+++.+.. |||+++|++|++++
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~ 219 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA 219 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999886 47899999999999855 99999999999875
No 152
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-45 Score=360.05 Aligned_cols=210 Identities=33% Similarity=0.564 Sum_probs=176.3
Q ss_pred EEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC----CHHH
Q 048556 261 IELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF----QLKW 334 (478)
Q Consensus 261 i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~ 334 (478)
++++||+|+|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 13699999999999999999999999999999999999999999999999998754 3466
Q ss_pred hhcceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 048556 335 IRGKIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIA 409 (478)
Q Consensus 335 ~r~~i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~ 409 (478)
+|+.++|+||++ .+|+.|++||+.++.. ..+.++..+. +.++++.+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788899999997 5788899999987531 1233332221 23344444 564 3456778899999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 225 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL 225 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999998875 36899999999998865 99999999999874
No 153
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.6e-45 Score=373.88 Aligned_cols=206 Identities=32% Similarity=0.531 Sum_probs=175.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.+
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999877654 4789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+||+|++.+|+. |++||+.++... .+.++..+ .+.+.++.+ |++........+|||||+||++|||||++
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~p~~LSgGq~QRVaLARaL~~ 161 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP-----RVMEALRMV--QLEEFAQRKPHQLSGGQQQRVAIARAVVN 161 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999987 999999987421 12222211 112233333 45555556678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||++..+.. ||+|++|++|++++
T Consensus 162 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~ 225 (375)
T PRK09452 162 KPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQ 225 (375)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999998753 6899999999998655 99999999999975
No 154
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-45 Score=359.88 Aligned_cols=204 Identities=27% Similarity=0.480 Sum_probs=175.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4899999999963 4799999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDGA----------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~----------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
+|+||++.++.+ |+.||+.++.... .++++.++++.. |++........+|||||+||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV-----------GLKPLAHRLVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc-----------CCHHHhcCCcccCCHHHHHHH
Confidence 999999877765 9999999753210 112233333333 344444455678999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~ 228 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 999999999999999999999999999999999988753 6899999999998865 99999999999874
No 155
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.5e-45 Score=361.20 Aligned_cols=208 Identities=27% Similarity=0.468 Sum_probs=175.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH---Hhh
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK---WIR 336 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r 336 (478)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 4799999999999999999999999999999999999999999999999998776543 357
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 337 GKIGLVSQEPVLFTS-SIKDNINYGKDG---ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~---~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
+.++|+||++.+|++ |++||+.++... .+.++.. ..+.+.++.+ |+.........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH-----STVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999986 999999874211 1111111 1122334444 5555566677899999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 224 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA 224 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE
Confidence 99999999999999999999999999999998753 6899999999998866 99999999999874
No 156
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2.8e-45 Score=357.03 Aligned_cols=207 Identities=34% Similarity=0.562 Sum_probs=175.8
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC--------H
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ--------L 332 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~--------~ 332 (478)
++++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 789999999963 46999999999999999999999999999999999999999999999999986542 3
Q ss_pred HHhhcceEEEecCCCCCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556 333 KWIRGKIGLVSQEPVLFT-SSIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~-~ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
..+++.++|+||++.+|+ .|++||+.++. .....++..+ .+.+.++.+ |++......+.+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 456788999999999886 59999998642 1112222111 123455554 666666778899999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE 224 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998875 47899999999999866 99999999999875
No 157
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-45 Score=353.94 Aligned_cols=207 Identities=24% Similarity=0.447 Sum_probs=178.1
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH-hhcce
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW-IRGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 339 (478)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 4 l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 4 LTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred EEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 789999999963 47999999999999999999999999999999999999999999999999998777544 56789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+|+||++.+|++ |++||+.++.. ..+.++ ....+.++++.+ |++........+|||||+||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ-----REDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHH-----HHHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 999999999985 99999987532 112221 122334566666 6776677788999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++|+++||||||++||+.+++.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 217 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA 217 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe
Confidence 9999999999999999999999999998875 47899999999987755 99999999999875
No 158
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-45 Score=360.02 Aligned_cols=208 Identities=32% Similarity=0.571 Sum_probs=176.7
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC-HHHhhcce
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ-LKWIRGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~i 339 (478)
++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999963 246999999999999999999999999999999999999999999999999997765 35678899
Q ss_pred EEEecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 340 GLVSQEPV--LFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 340 ~~v~Q~~~--lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+|+||++. ++..|++||+.++... .+.++..+. +.+.++.+ |++......+..|||||+||++|||||+
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 5667999999876422 222222211 22334444 5666666778899999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
.+|+++||||||++||+.++..+++.|+++. +++|+|++||+++.+..||++++|++|++++
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~ 215 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVL 215 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999998875 4789999999999998899999999999874
No 159
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-45 Score=358.31 Aligned_cols=210 Identities=29% Similarity=0.488 Sum_probs=176.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|+++.|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999743 24699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEecCCC-CC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 340 GLVSQEPV-LF-TSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 340 ~~v~Q~~~-lf-~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+|+||++. +| ..|+++|+.++... ...++..+ .+.+.++.+ |+.........+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-----RVSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 45 45899999876422 12222211 112233333 4444555677899999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~ 222 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYK 222 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEE
Confidence 99999999999999999999999999988753 689999999999988899999999999975
No 160
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-45 Score=374.25 Aligned_cols=206 Identities=28% Similarity=0.480 Sum_probs=175.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. ++.+
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 3899999999963 4699999999999999999999999999999999999999999999999999876643 5689
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+||+|++.+|+. |++||+.++... .+.++..+ .+.++++.+ |++........+||||||||++|||||+.
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999976 999999986421 22222111 123344444 56666667778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~ 214 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999988753 6899999999998765 99999999999875
No 161
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-45 Score=355.59 Aligned_cols=213 Identities=23% Similarity=0.430 Sum_probs=179.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 338 (478)
-++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 3899999999963 479999999999999999999999999999999999999999999999999988775554 456
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCH----------HHH--HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 339 IGLVSQEPVLFTS-SIKDNINYGKDGASI----------AEI--MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~----------~~~--~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
++|+||++.+|++ |++||+.++.....+ ... ........+.++++.+ |++........+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 9999999999986 999999985311000 000 0001112234556665 777778888999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++||||++.+|+++||||||++||+.+++.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 234 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLA 234 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEe
Confidence 999999999999999999999999999999999999988753 6899999999999866 99999999999874
No 162
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.8e-45 Score=365.78 Aligned_cols=207 Identities=27% Similarity=0.463 Sum_probs=174.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+.+
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA-RLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH-HHHhhcE
Confidence 4899999999963 46999999999999999999999999999999999999999999999999986543 5568899
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFT-SSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~-~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+|+||++.+|+ .|++||+.+... ..+.++..+.+ .++++.+ |+.........+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999999886 499999985321 12222222211 2233333 45445556678899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|+++||||||++||+.+++.+++.|+++. +++|+|++||+++.+.. ||+|++|++|++++
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~ 215 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIA 215 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999875 47899999999999876 99999999999874
No 163
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.6e-45 Score=356.75 Aligned_cols=207 Identities=33% Similarity=0.553 Sum_probs=176.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC---------
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ--------- 331 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~--------- 331 (478)
|+++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 578999999963 47999999999999999999999999999999999999999999999999987543
Q ss_pred ----HHHhhcceEEEecCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556 332 ----LKWIRGKIGLVSQEPVLFT-SSIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG 403 (478)
Q Consensus 332 ----~~~~r~~i~~v~Q~~~lf~-~ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 403 (478)
...+++.++|++|++.+|+ .|++||+.++.. ....++.. ..+.+.++.+ |++..+...+.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE-----KRAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2456889999999999886 599999987521 11222211 1234455555 6666677778999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+||++|||||+.+|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999988753 6899999999999855 99999999999975
No 164
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.5e-44 Score=355.04 Aligned_cols=222 Identities=27% Similarity=0.438 Sum_probs=189.2
Q ss_pred HHHHHHccCCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556 233 KLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 233 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
.+.+++..++++.. ..+.+.....|+++|+++.. +++|+|+||+|++||+++|+||||||||||+++|+|+
T Consensus 16 ~~~~~~~~~~~~~~----~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 16 GFGELLEKAKQENN----DRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHhccccccc----ccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34555655443221 22233444679999999952 3699999999999999999999999999999999999
Q ss_pred CCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcccc
Q 048556 313 YDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTM 392 (478)
Q Consensus 313 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~ 392 (478)
++|++|+|.++| .++|+||++.+|++|++||+.++.. ....+..++++..++.+++..+|.++++.
T Consensus 87 ~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 152 (282)
T cd03291 87 LEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTV 152 (282)
T ss_pred CCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccce
Confidence 999999999988 3999999999999999999998643 23345556677778888999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCCeEEEEecCchhhhhcCEEEEEe
Q 048556 393 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEAL-DKIMINRTTVIVAHRLSTVRNADLIAVIH 471 (478)
Q Consensus 393 ~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~vl~ 471 (478)
+++.+..|||||+||++|||||+.+|+++||||||++||+.++..+.+.+ +...+++|+|++||+++.+..||++++|+
T Consensus 153 ~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~ 232 (282)
T cd03291 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232 (282)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999998864 55556789999999999998899999999
Q ss_pred CCEEee
Q 048556 472 QGKLVE 477 (478)
Q Consensus 472 ~G~i~~ 477 (478)
+|++++
T Consensus 233 ~G~i~~ 238 (282)
T cd03291 233 EGSSYF 238 (282)
T ss_pred CCEEEE
Confidence 999864
No 165
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-45 Score=361.89 Aligned_cols=206 Identities=34% Similarity=0.518 Sum_probs=170.6
Q ss_pred EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh----hc
Q 048556 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI----RG 337 (478)
Q Consensus 262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~----r~ 337 (478)
.++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 56788888853 469999999999999999999999999999999999999999999999999887765443 46
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556 338 KIGLVSQEPVLFT-SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 338 ~i~~v~Q~~~lf~-~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
+++|+||++.+|+ .|++||+.++... ...++.. ..+.+.++.+ |++..+.....+||||||||++||||+
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral 175 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAERE-----ERAAEALELV--GLEGWEHKYPDELSGGMQQRVGLARAL 175 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence 7999999999986 5999999875311 1111111 1122334443 455555566678999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+++|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 241 (269)
T cd03294 176 AVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ 241 (269)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999988742 6899999999998765 99999999999875
No 166
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-45 Score=356.38 Aligned_cols=207 Identities=26% Similarity=0.469 Sum_probs=175.4
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 47999999999999999999999999999999999999999999999999998888778888899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC----C--HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDGA----S--IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~~----~--~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
|+||++.+|.+ |++||+.++.... . .++. ...+.+.++.+ |++.........|||||+||++||||
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lara 152 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAED-----NARVNQAMEQT--RINHLADRRLTDLSGGQRQRAFLAMV 152 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHH-----HHHHHHHHHHc--CCHHHHcCCcccCCHHHHHHHHHHHH
Confidence 99999998877 9999999863210 0 0110 01112233332 45445556778999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 218 (255)
T PRK11231 153 LAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMA 218 (255)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEE
Confidence 999999999999999999999999999998875 47899999999998765 99999999999864
No 167
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-45 Score=354.36 Aligned_cols=207 Identities=31% Similarity=0.527 Sum_probs=176.3
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC------CCCHHH
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK------EFQLKW 334 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~------~~~~~~ 334 (478)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 47999999999999999999999999999999999999999999999999873 123456
Q ss_pred hhcceEEEecCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556 335 IRGKIGLVSQEPVLFTS-SIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI 410 (478)
Q Consensus 335 ~r~~i~~v~Q~~~lf~~-ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l 410 (478)
+|+.++|+||++.+|++ |++||+.++. .....++.. ..+.++++.+ |++..+.....+||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 78899999999999976 9999997531 111222211 1234556655 67777777888999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||++++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~ 221 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999875 37899999999999865 99999999999875
No 168
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-45 Score=362.34 Aligned_cols=212 Identities=29% Similarity=0.510 Sum_probs=174.6
Q ss_pred ccEEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC----C-C
Q 048556 259 GDIELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE----F-Q 331 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~----~-~ 331 (478)
+.|+++|++++|++++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4699999999996431 1359999999999999999999999999999999999999999999999998752 1 3
Q ss_pred HHHhhcceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHH
Q 048556 332 LKWIRGKIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQ 406 (478)
Q Consensus 332 ~~~~r~~i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Q 406 (478)
...+|+.++|+||++ .+|..|++||+.++.. ....++..+. +.+.++.+ |+. ........+|||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLV--QLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhcCChhhCCHHHHH
Confidence 456788999999998 4677899999987632 1222222221 12233333 442 3456678899999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 231 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS 231 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999988753 6899999999998755 99999999999875
No 169
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-45 Score=358.72 Aligned_cols=208 Identities=33% Similarity=0.482 Sum_probs=173.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~ 332 (478)
-++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4899999999963 469999999999999999999999999999999999864 789999999999864 334
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA---SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~---~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
..+++.++|+||++.+|++|++||+.++.... .. +.+.++++..++. .++.........+|||||+
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW-------DEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC-------cchHHHHhcCcccCCHHHH
Confidence 56788999999999999999999998753111 11 1122222222221 1122345677889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~ 243 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE 243 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999988767899999999998765 99999999999875
No 170
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-45 Score=353.98 Aligned_cols=208 Identities=34% Similarity=0.514 Sum_probs=174.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCC--CCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKE--FQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~ 332 (478)
.++++||++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5899999999963 4699999999999999999999999999999999999863 68999999999864 345
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--A-SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~-~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
..+|+.++|+||++.+|+.|++||+.++... . .. +++.++++..++. +++.......+.+|||||+
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALW-------DEVKDRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-------hhhHHHHhcCCCCCCHHHH
Confidence 5678899999999999989999999875311 1 11 1222223333222 1223345667889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~ 225 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVE 225 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999988667899999999998765 99999999999875
No 171
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-45 Score=358.03 Aligned_cols=209 Identities=31% Similarity=0.476 Sum_probs=176.1
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CC
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQ 331 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~ 331 (478)
..++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 46999999999953 579999999999999999999999999999999999996 579999999999864 34
Q ss_pred HHHhhcceEEEecCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556 332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--A-SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ 404 (478)
Q Consensus 332 ~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~-~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 404 (478)
...+++.++|+||++.+|..|++||+.++... . .. +++.++++..++.+ ++++.++..+.+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD-------QVKDDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc-------hhhhhhcCCcccCCHHH
Confidence 55678899999999999989999999885321 1 11 12222333333222 22345667889999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+||++||||++++|+++||||||++||+.+++.+.+.|+++.++.|+|++||+++.+.. ||++++|++|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 242 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIE 242 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999988767899999999998755 99999999999975
No 172
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=4.2e-45 Score=350.55 Aligned_cols=213 Identities=26% Similarity=0.409 Sum_probs=172.1
Q ss_pred EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC---CCccEEEECCeecCCCCHHHhh
Q 048556 261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGVNLKEFQLKWIR 336 (478)
Q Consensus 261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~r 336 (478)
++++||+|+|++.+ .+++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999997542 2579999999999999999999999999999999999999 99999999999875 34678
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHH-HHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556 337 GKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAK-FIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~-~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
+.++|+||++.+|++ |++||+.++..........+........+ .+..+ |+..........|||||+||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 889999999999987 99999987532111000000111111122 23332 444455567789999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCc-hh-hhhcCEEEEEeCCEEeeC
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRL-ST-VRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~-~~-~~~~d~i~vl~~G~i~~~ 478 (478)
+++|+++||||||++||+.+++.+.+.+++.. +++|+|++||++ .. .+.||++++|++|++++.
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 225 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYS 225 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEec
Confidence 99999999999999999999999999998875 468999999998 34 455999999999999863
No 173
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-45 Score=356.35 Aligned_cols=208 Identities=33% Similarity=0.476 Sum_probs=173.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC--C---CccEEEECCeecCC--CCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGVNLKE--FQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~---~~G~i~~~g~~~~~--~~~ 332 (478)
-++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 469999999999999999999999999999999999997 3 58999999999864 345
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCCC---CHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA---SIAE----IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~---~~~~----~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
..+|+.++|+||++.+|++|++||+.++.... ..++ +.++++..++.+. +...+...+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDE-------VKDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhhhhCCcccCCHHHH
Confidence 56788999999999999999999998753211 1222 2222222222211 12345677889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++||||++.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 234 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE 234 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999998777899999999998765 99999999999975
No 174
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.4e-45 Score=363.21 Aligned_cols=204 Identities=31% Similarity=0.548 Sum_probs=176.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|+++.|++ ++.+|+|+||+|++||++|++||||||||||+|+|+|++.|++|+|.++|.+...- ..+.++++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999962 24799999999999999999999999999999999999999999999999998765 66788999
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDGA------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
||+||++.+++. |++||+.+...-. ..+++.+.++.. |++..-......||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELF-----------GLEDKANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHc-----------CCchhhCcchhhcCHHHHHHHHHHH
Confidence 999999998887 9999999854211 123344444433 3443224567899999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI-N-RTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~-~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||+++|++|||||||+|||+.++..+++.|+++.+ + +||+++||.++.++. ||+|++|++|+++.
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~ 217 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIA 217 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999875 4 699999999999988 99999999999975
No 175
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=357.84 Aligned_cols=208 Identities=30% Similarity=0.552 Sum_probs=175.5
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 36999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEecCCC--CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 341 LVSQEPV--LFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 341 ~v~Q~~~--lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
|+||++. +|+.|++||+.++.. ..+.++..+ ...++++.+ |+..........||||||||++|||||+.
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~~ 154 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSALHML--GLEELRDRVPHHLSGGEKKRVAIAGVIAM 154 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 9999973 677899999987532 122222211 122333333 44444556678999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVR-NADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~ 477 (478)
+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++
T Consensus 155 ~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~ 218 (277)
T PRK13652 155 EPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVA 218 (277)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEE
Confidence 9999999999999999999999999988753 689999999999985 599999999999875
No 176
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-45 Score=356.26 Aligned_cols=208 Identities=33% Similarity=0.518 Sum_probs=173.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCC--CH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEF--QL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~ 332 (478)
.++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 4699999999999999999999999999999999999985 799999999998653 23
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCC--CCCHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GASIAE----IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ 406 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~~~~~----~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q 406 (478)
..+++.++|+||++.+|+.|++||+.++.. ..+.++ +.++++..++.+ ............|||||+|
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD-------ETSDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCChhhCCHHHHH
Confidence 456788999999999999999999987531 122222 222222222211 1133455677899999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|++|||||+.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 233 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE 233 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999988667899999999998865 99999999999875
No 177
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-45 Score=359.85 Aligned_cols=210 Identities=32% Similarity=0.570 Sum_probs=178.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCc---cEEEECCeecCCCCHHHhh
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGVNLKEFQLKWIR 336 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~~r 336 (478)
-++++|++|.|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...++
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 48999999999642 2469999999999999999999999999999999999999988 8999999999877777788
Q ss_pred cceEEEecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 337 GKIGLVSQEPV--LFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 337 ~~i~~v~Q~~~--lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
++++|+||++. +++.|+.||+.++.+. .+.++..+ .+.+.++.+ |+.........+|||||+||++|||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~lar 156 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK-----IVRDVLADV--GMLDYIDSEPANLSGGQKQRVAIAG 156 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHH-----HHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHH
Confidence 89999999984 5677999999876322 23333211 112333333 4555566667899999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
||+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++
T Consensus 157 al~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~ 223 (282)
T PRK13640 157 ILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLA 223 (282)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999988753 689999999999998899999999999975
No 178
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-45 Score=355.08 Aligned_cols=208 Identities=31% Similarity=0.475 Sum_probs=172.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC--CC---CccEEEECCeecCCC--CH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY--DP---QAGEVLIDGVNLKEF--QL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~---~~G~i~~~g~~~~~~--~~ 332 (478)
-++++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|++ .| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 3899999999963 46999999999999999999999999999999999995 36 489999999998643 34
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCC--CCC-HH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GAS-IA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~~-~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
..+|+.++|+||++.+|+.|++||+.++.. ... .+ ++.++++..++.+ ++.+.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD-------EVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch-------hHHHHHhcCcccCCHHHH
Confidence 567888999999999999999999987531 111 11 2222222322211 223455677889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++||||++.+|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE 227 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999988667899999999998765 99999999999875
No 179
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-45 Score=358.13 Aligned_cols=209 Identities=34% Similarity=0.510 Sum_probs=175.9
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCC--CC
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKE--FQ 331 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~--~~ 331 (478)
..++++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 24 ~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 24 TALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred cEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 46999999999963 4699999999999999999999999999999999999984 89999999999864 34
Q ss_pred HHHhhcceEEEecCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556 332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--A-SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ 404 (478)
Q Consensus 332 ~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~-~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 404 (478)
...+|+.++|+||++.+|++|++||+.++... . .. +++.++++..++.+ .+.+..+..+.+|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD-------EVKDRLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCh-------hHHHHhhCCcccCCHHH
Confidence 55678899999999999989999999875321 1 11 12333333333222 22245667789999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+||++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 247 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE 247 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999988767899999999998765 99999999999875
No 180
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.3e-45 Score=356.05 Aligned_cols=209 Identities=32% Similarity=0.544 Sum_probs=176.1
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC--------
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF-------- 330 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~-------- 330 (478)
+.++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 45999999999963 4799999999999999999999999999999999999999999999999987542
Q ss_pred -----CHHHhhcceEEEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccc-cCCCCCC
Q 048556 331 -----QLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMV-GEHGTQL 400 (478)
Q Consensus 331 -----~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~-~~~g~~L 400 (478)
....+++.++|+||++.+|+. |++||+.++.. ....++.. ..+.++++.+ |+.... .....+|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR-----ERAVKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHc--CCChhhhhCCcccC
Confidence 134667899999999999985 99999986421 11211111 1123445554 565543 5678899
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||++|++|++++
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 232 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 232 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 47899999999999886 99999999999975
No 181
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-45 Score=360.18 Aligned_cols=211 Identities=27% Similarity=0.479 Sum_probs=175.2
Q ss_pred cEEEEeEEEECCCCC---CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC-HHHh
Q 048556 260 DIELKDIYFSYPSRP---GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ-LKWI 335 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~---~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~ 335 (478)
-++++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 389999999997421 246999999999999999999999999999999999999999999999999987643 3557
Q ss_pred hcceEEEecCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 336 RGKIGLVSQEPV--LFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 336 r~~i~~v~Q~~~--lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
++.++|+||++. +|..|+.||+.++... .+.++..+. +.+.++.+ |+.........+|||||+||++||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrv~la 156 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER-----VDESLKKV--GMYEYRRHAPHLLSGGQKQRVAIA 156 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHH-----HHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHH
Confidence 889999999984 6666999999886321 122221111 12233333 455555566789999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
|||+.+|+++||||||++||+.++..+.+.|+++. .++|+|++||+++.+..||++++|++|++++
T Consensus 157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~ 224 (280)
T PRK13633 157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVM 224 (280)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999875 3789999999999988899999999999875
No 182
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=5.4e-45 Score=349.57 Aligned_cols=204 Identities=27% Similarity=0.474 Sum_probs=175.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-|+++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999963 4799999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEEecCCCCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+|++|++.+|+.|++||+.++... ...++ ..+.++++.+ |+. +.......+|||||+||++|||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~ 154 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP-------AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQF 154 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHH-------HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 999999999989999999864210 11111 1123455555 553 45677889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEe--CCEE
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIH--QGKL 475 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~--~G~i 475 (478)
+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.++.||++++|+ +|++
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~ 217 (225)
T PRK10247 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEM 217 (225)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchH
Confidence 9999999999999999999999999998743 689999999999998899999996 4554
No 183
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-45 Score=355.98 Aligned_cols=208 Identities=34% Similarity=0.505 Sum_probs=172.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~ 332 (478)
-++++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 3899999999963 479999999999999999999999999999999999997 479999999999854 344
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCC--CC-HH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--AS-IA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~~-~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
..+++.++|++|++.+|+.|++||+.++... .. .+ ++.++++..++++ .........+.+|||||+
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHH
Confidence 5678889999999999999999999875321 11 11 2222222222211 011334567789999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIE 226 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999988667899999999998766 99999999999875
No 184
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.5e-44 Score=364.58 Aligned_cols=211 Identities=28% Similarity=0.414 Sum_probs=176.4
Q ss_pred cEEEEeEEEECCCCC----------CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC
Q 048556 260 DIELKDIYFSYPSRP----------GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE 329 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~----------~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 329 (478)
-++++|++++|+... ..++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996311 2469999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH---hhcceEEEecCC--CCCc-ccHHHHHhcCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCC
Q 048556 330 FQLKW---IRGKIGLVSQEP--VLFT-SSIKDNINYGK----DGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGT 398 (478)
Q Consensus 330 ~~~~~---~r~~i~~v~Q~~--~lf~-~ti~eNl~~~~----~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~ 398 (478)
++.++ +|+.++||+|++ .+++ .|+.||+.++. +..+.++..+.. .+.++.+ |++ ......+.
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~-----~~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV-----KAMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHc--CCChHHhcCCcc
Confidence 87543 578899999998 4775 59999997531 123333332221 2333333 442 34567788
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475 (478)
Q Consensus 399 ~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i 475 (478)
+|||||+||++|||||+.+|+++|+||||++||..++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998753 6899999999999976 999999999999
Q ss_pred ee
Q 048556 476 VE 477 (478)
Q Consensus 476 ~~ 477 (478)
+|
T Consensus 241 ve 242 (331)
T PRK15079 241 VE 242 (331)
T ss_pred EE
Confidence 87
No 185
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=6.1e-45 Score=357.68 Aligned_cols=210 Identities=32% Similarity=0.492 Sum_probs=174.4
Q ss_pred EEEEeEEEECCCC------CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH
Q 048556 261 IELKDIYFSYPSR------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW 334 (478)
Q Consensus 261 i~~~~v~~~y~~~------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~ 334 (478)
++++||+|.|++. .++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1257999999999999999999999999999999999999999999999999998776543
Q ss_pred ---hhcceEEEecCCC--CCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHH
Q 048556 335 ---IRGKIGLVSQEPV--LFT-SSIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQ 404 (478)
Q Consensus 335 ---~r~~i~~v~Q~~~--lf~-~ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq 404 (478)
+|+.++|+||++. +++ .|++||+.++.. ....++ ....+.++++.+ |++ ......+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESE-----QKARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 5778999999973 444 599999975321 111111 111233455555 664 45567788999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||++||||++.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999998753 6899999999999875 99999999999875
No 186
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=6e-45 Score=363.89 Aligned_cols=206 Identities=23% Similarity=0.449 Sum_probs=178.6
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+++.++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|+||++.+|++ |++||+.+.... ...++..+ .+.+.++.+ |++.........||||||||++|||||+++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999987 999999864311 12222211 123455555 677777778899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+++||||||++||+.+.+.+++.|+++.+++|+|++||+++.+.. ||+|++|++|+++.
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~ 212 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVA 212 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999998777999999999998876 99999999999874
No 187
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=6.8e-45 Score=368.03 Aligned_cols=207 Identities=29% Similarity=0.498 Sum_probs=174.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...++.+
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999963 46999999999999999999999999999999999999999999999999987654 4678899
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+|+||++.+|.. |++||+.+.... .+.++..+. +.++++.+ |+.........+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEFA--RLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 999999998764 999999864221 222222221 12233322 44444555667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|+++||||||++||+.+++.+++.|+++. +++|+|++||+++.+.. ||+|++|++|+++.
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~ 252 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIA 252 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999875 47899999999999876 99999999999974
No 188
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=352.31 Aligned_cols=208 Identities=30% Similarity=0.522 Sum_probs=175.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC-----ccEEEECCeecCC--CCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGVNLKE--FQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-----~G~i~~~g~~~~~--~~~ 332 (478)
.++++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 4899999999963 46999999999999999999999999999999999999997 6999999999864 344
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCC--CC-HH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--AS-IA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~~-~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
..+|+.++|+||++.+|+.|++||+.++... .. .+ .+.++++..++.+ ++.......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD-------EVKDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCch-------hhhhHhhCCcccCCHHHH
Confidence 5678899999999999999999999876321 11 11 1222222333222 233456678899999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~ 226 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVE 226 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEE
Confidence 9999999999999999999999999999999999999988667899999999999876 89999999999865
No 189
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=359.67 Aligned_cols=210 Identities=30% Similarity=0.556 Sum_probs=176.5
Q ss_pred EEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC----CHHH
Q 048556 261 IELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF----QLKW 334 (478)
Q Consensus 261 i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~ 334 (478)
|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996321 14699999999999999999999999999999999999999999999999998643 2456
Q ss_pred hhcceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 048556 335 IRGKIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIA 409 (478)
Q Consensus 335 ~r~~i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~ 409 (478)
.++.++|+||++ .+|..|++||+.++.. ..+.++..+ .+.++++.+ |++ ........+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKV--GLSEDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhhCCcccCCHHHHHHHH
Confidence 678899999998 5777899999987532 222222221 123455555 675 3557778999999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~ 225 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999875 46899999999998765 99999999999875
No 190
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-45 Score=351.03 Aligned_cols=206 Identities=34% Similarity=0.553 Sum_probs=169.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCe---ecCCCCHHHhh
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV---NLKEFQLKWIR 336 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~---~~~~~~~~~~r 336 (478)
.|+++|+++.|+. .++++|||++|+.||.+|+.||||||||||+++|+|+..|++|.|.+||. |.++.... .
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--D 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--h
Confidence 4788999999964 47999999999999999999999999999999999999999999999999 65554433 4
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCC----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 337 GKIGLVSQEPVLFTS-SIKDNINYGKDG----ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~----~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
++||||+|+.-||.. ||++||.||-+- .+..++. .+. .+.++-. .++..-...+.+||||||||+|||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r--~rv---~elL~lv--qL~~la~ryP~QLSGGQrQRVALA 149 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR--ARV---EELLRLV--QLEGLADRYPAQLSGGQRQRVALA 149 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHH--HHH---HHHHHHh--cccchhhcCchhcChHHHHHHHHH
Confidence 789999999999986 999999999621 1111111 111 2222211 233333456789999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||...|++|+||||+++||+.-++.+..-|+++.. +.|+++|||+.+++.. ||||+||++|+|.+
T Consensus 150 RALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieq 218 (345)
T COG1118 150 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQ 218 (345)
T ss_pred HHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeee
Confidence 999999999999999999999999999999988743 6899999999987655 99999999999864
No 191
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-45 Score=355.11 Aligned_cols=210 Identities=34% Similarity=0.503 Sum_probs=173.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc---CCC--CccEEEECCeecCCC--CH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF---YDP--QAGEVLIDGVNLKEF--QL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~---~~~--~~G~i~~~g~~~~~~--~~ 332 (478)
.++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4889999999963 4699999999999999999999999999999999997 454 589999999998754 34
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhC--CCCccccccCCCCCCChHHHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--A-SIAEIMAAAELANAAKFIDSL--PQGLDTMVGEHGTQLSGGQKQR 407 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~-~~~~~~~a~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGq~Qr 407 (478)
..+++.++|+||++.+|+.|++||+.++... . ..++..+. +.+.++.+ ++.+.+.....+.+||||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQR-----VEETLKGAALWDEVKDKLKESAFALSGGQQQR 154 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHH-----HHHHHHHcCCCcchhhhhhCCcccCCHHHHHH
Confidence 5678899999999999988999999875321 1 11111111 12233322 2222345567789999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 155 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~ 225 (250)
T PRK14245 155 LCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE 225 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999998777899999999998855 99999999999975
No 192
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=352.18 Aligned_cols=208 Identities=32% Similarity=0.515 Sum_probs=175.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecC-CCCHH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLK-EFQLK 333 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~-~~~~~ 333 (478)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4789999999963 4799999999999999999999999999999999999986 5999999999985 44566
Q ss_pred HhhcceEEEecCCCCCcccHHHHHhcCCCC--CC-HH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 048556 334 WIRGKIGLVSQEPVLFTSSIKDNINYGKDG--AS-IA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ 406 (478)
Q Consensus 334 ~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~~-~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q 406 (478)
.+|+.++|+||++.+|+.|++||+.++... .. .+ ++.++++..++.+ ++.+.+......|||||+|
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD-------EVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCch-------hhhHHhhcCcccCCHHHHH
Confidence 778899999999999999999999876321 11 11 2222233333222 2234556678899999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~ 224 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVE 224 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999998767899999999999776 99999999999975
No 193
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-45 Score=355.67 Aligned_cols=207 Identities=33% Similarity=0.534 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCCCC--HH
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKEFQ--LK 333 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~~~--~~ 333 (478)
-+++|++|.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 479999999999999999999999999999999999986 47999999999886543 23
Q ss_pred HhhcceEEEecCCCCCcccHHHHHhcCCC--CC--CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 334 WIRGKIGLVSQEPVLFTSSIKDNINYGKD--GA--SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 334 ~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~--~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
.+|+.++|+||++.+|++|++||+.++.. .. .. +++.++++..++.++ +.+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhcChhhCCHHHH
Confidence 56889999999999999999999987521 11 11 122222333222211 12345667889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~ 228 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE 228 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999988768999999999999865 99999999999975
No 194
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=355.10 Aligned_cols=208 Identities=25% Similarity=0.420 Sum_probs=176.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEecCCCCCc-ccHHHHHhcCC-CCC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 340 GLVSQEPVLFT-SSIKDNINYGK-DGA-----SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 340 ~~v~Q~~~lf~-~ti~eNl~~~~-~~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
+|+||++.+|. .|++||+.++. +.. ..++. ...+.+.++.+ |++.........|||||+||++|||
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lar 156 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKED-----EEAVTKAMQAT--GITHLADQSVDTLSGGQRQRAWIAM 156 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHH-----HHHHHHHHHHc--CCHHHhcCCcccCChHHHHHHHHHH
Confidence 99999999886 49999998753 110 00110 11122333333 4554556678899999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 157 al~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 224 (265)
T PRK10253 157 VLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA 224 (265)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999988753 6899999999998765 99999999999875
No 195
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=353.22 Aligned_cols=208 Identities=29% Similarity=0.486 Sum_probs=175.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCC--CH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEF--QL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~ 332 (478)
-|+++|++|.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 4799999999999999999999999999999999999763 489999999998765 44
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCCC---CHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA---SIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~---~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
...++.++|++|++.+|+.|++||+.++.... ... ++.++++..++ .+++.+.++..+..||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAAL-------WDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcC-------chhhHHHhhcChhhCCHHHH
Confidence 56788899999999999999999999863211 111 22222222222 22334456778899999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~ 228 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIE 228 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999988767899999999999865 99999999999875
No 196
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1e-44 Score=346.44 Aligned_cols=208 Identities=33% Similarity=0.474 Sum_probs=176.9
Q ss_pred EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH---Hhh
Q 048556 261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK---WIR 336 (478)
Q Consensus 261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~---~~r 336 (478)
++++|+++.|++.. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 14699999999999999999999999999999999999999999999999998776643 467
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 337 GKIGLVSQEPVLFT-SSIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~-~ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
+.++|+||++.+|. .|+.||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE-----RARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 88999999999998 599999987542 122222221 233455555 6666667777899999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEE
Q 048556 413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKL 475 (478)
Q Consensus 413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i 475 (478)
|++.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++..+.||+|++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999988753 6899999999998777999999999986
No 197
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-44 Score=352.18 Aligned_cols=207 Identities=29% Similarity=0.479 Sum_probs=175.2
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998887777788999
Q ss_pred EEecCCCC-CcccHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc--
Q 048556 341 LVSQEPVL-FTSSIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL-- 415 (478)
Q Consensus 341 ~v~Q~~~l-f~~ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall-- 415 (478)
|+||++.+ +..|++||+.++.... +.++..+ .+.+.++.+ |++.........||||||||++|||||+
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGe~qrv~la~al~~~ 152 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDA-----LVAAALAQV--DLAHLAGRDYPQLSGGEQQRVQLARVLAQL 152 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHH-----HHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcc
Confidence 99999987 4569999998864211 1111111 112333333 5555556677899999999999999999
Q ss_pred ----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 416 ----KDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ----~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 153 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 221 (258)
T PRK13548 153 WEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221 (258)
T ss_pred cccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEe
Confidence 5999999999999999999999999998875 46899999999998875 99999999999874
No 198
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-45 Score=332.31 Aligned_cols=207 Identities=32% Similarity=0.515 Sum_probs=178.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
+++.+++++|+. ...+++|+||+++.||++||.|||||||||++++|++++.|++|+|++||.|....+ ...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcc
Confidence 678999999974 346899999999999999999999999999999999999999999999999987765 55689999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
+++.+..++.. |++|||.|+..- -+..++. ++.+ +....| +++..+..+..+||.|+|||++|||||++|
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~k--ari~---~l~k~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh~ 151 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIK--ARIA---ELSKRL--QLLEYLDRRVGEFSTGMKQKVAIARALVHD 151 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHH--HHHH---HHHHHh--ChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence 99998899876 999999986421 1222222 2232 333333 566666677788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|++++|||||||||..+.+++.+-+++++. ++++|+.||.++.++. ||+++++.+|+++.
T Consensus 152 P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~ 213 (245)
T COG4555 152 PSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVL 213 (245)
T ss_pred CCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEE
Confidence 999999999999999999999999999875 8999999999999996 99999999999875
No 199
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-44 Score=354.48 Aligned_cols=211 Identities=28% Similarity=0.479 Sum_probs=175.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~ 332 (478)
-++++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 469999999999999999999999999999999999987 699999999999853 345
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhC--CCCccccccCCCCCCChHHHHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSL--PQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
..+++.++|+||++.+|..|++||+.++.. ...+++..+ ..+.+.++.+ .+++.......+.+||||||||+
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLD----EIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHH----HHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 667889999999999998999999987531 122221111 0111222221 12344556678899999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 246 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNE 246 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999988777899999999999765 99999999999975
No 200
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-44 Score=355.85 Aligned_cols=207 Identities=29% Similarity=0.481 Sum_probs=172.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC--CCCHHHhhcc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK--EFQLKWIRGK 338 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 338 (478)
++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. +.+...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 46999999999999999999999999999999999999999999999999985 3344567888
Q ss_pred eEEEecCCC--CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556 339 IGLVSQEPV--LFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 339 i~~v~Q~~~--lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
++|+||++. ++..|+.+|+.++.. ..+.++..+. +.+.++.+ |++........+||||||||++|||||
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 999999986 566789999987421 1222222111 12333333 444444556789999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~ 216 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT 216 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999998875 46899999999999865 99999999999875
No 201
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.7e-44 Score=343.20 Aligned_cols=199 Identities=32% Similarity=0.529 Sum_probs=168.3
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|+++.|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ .+++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 467999999999999999999999999999999999999999999999987643 3578899
Q ss_pred EEecCCCCCcc-cHHHHHhcCC-CCC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 341 LVSQEPVLFTS-SIKDNINYGK-DGA-----SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~-~~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
|+||++.+|.+ |++||+.++. +.. ..+++.++++..+ ++........+|||||+||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVG-----------IADYLDRLPEQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcC-----------cHHHhhCCcccCCHHHHHHHHHHHH
Confidence 99999999975 9999998642 211 1223333444444 4444445567899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++++|+++||||||++||+.+++.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 9999999999999999999999999999998753 6899999999998765 99999999999976
No 202
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.3e-44 Score=353.59 Aligned_cols=212 Identities=26% Similarity=0.432 Sum_probs=176.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999963 47999999999999999999999999999999999999999999999999998888888888899
Q ss_pred EEecCCCCC-cccHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 341 LVSQEPVLF-TSSIKDNINYGKDGASI-AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 341 ~v~Q~~~lf-~~ti~eNl~~~~~~~~~-~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
|+||++.++ ..|++||+.++...... ...........+.+.+..+ |+..........|||||+||++||||++.+|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999998654 56999999886321100 0000000111223444444 4445556677899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 419 RILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 419 ~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVA 217 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEE
Confidence 99999999999999999999999998753 6899999999999855 99999999999875
No 203
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=352.73 Aligned_cols=202 Identities=30% Similarity=0.508 Sum_probs=171.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 689999999963 4799999999999999999999999999999999999999999999999988643 24689
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFT-SSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~-~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|++|++.+|+ .|++||+.++.. ....++. ...+.++++.+ |++........+||||||||++|||||+.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR-----LEIAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHH-----HHHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999987 499999987531 1122211 11234455555 566556677889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEe--CCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIH--QGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~--~G~i~~ 477 (478)
|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||++++|+ +|++++
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 99999999999999999999999998873 37899999999998866 99999998 599876
No 204
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=352.46 Aligned_cols=208 Identities=34% Similarity=0.488 Sum_probs=174.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCC--CH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEF--QL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~ 332 (478)
-++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4889999999963 4699999999999999999999999999999999999875 789999999998643 34
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--A-SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~-~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
..+++.++|+||++.+|+.|++||+.++... . +. +++.++++..++.+ ++..........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD-------EVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHHH
Confidence 5668889999999999999999999875311 1 11 12223333333221 223345567889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++||||++.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~ 226 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEE
Confidence 9999999999999999999999999999999999999988767899999999998766 99999999999875
No 205
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=352.23 Aligned_cols=209 Identities=30% Similarity=0.488 Sum_probs=173.4
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC--C---CccEEEECCeecCCC--C
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGVNLKEF--Q 331 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~---~~G~i~~~g~~~~~~--~ 331 (478)
+.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 45899999999963 469999999999999999999999999999999999986 4 689999999998643 3
Q ss_pred HHHhhcceEEEecCCCCCcc-cHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH
Q 048556 332 LKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDG---ASIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG 403 (478)
Q Consensus 332 ~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~---~~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG 403 (478)
...+|+.++|+||++.+|.. |++||+.++... .+.+ ++.++++..++.+++ .......+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-------KDRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcCcCCHH
Confidence 45678899999999999984 999999875311 1111 223333333332211 22345678899999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||||++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVE 227 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998777899999999998855 99999999999875
No 206
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=352.68 Aligned_cols=208 Identities=32% Similarity=0.504 Sum_probs=173.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCC--CH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEF--QL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~ 332 (478)
-|+++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 3889999999963 4799999999999999999999999999999999999984 899999999988653 33
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG---ASIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~---~~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
..+++.++|+||++.+|+.|++||+.++... ...+ ++.++++..++.+.+ +........+|||||+
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHH
Confidence 4567889999999999999999999875311 1111 223333333332211 2345677889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++||||++++|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE 225 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999988767899999999997655 99999999999874
No 207
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=369.96 Aligned_cols=206 Identities=32% Similarity=0.547 Sum_probs=176.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.+
T Consensus 19 ~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 19 LLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred eEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999963 469999999999999999999999999999999999999999999999999987664 46789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+||+|++.+|+. |++||+.++... .+..+..+ .+.+.++.+ |+.........+|||||+||++|||||++
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~~ 166 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLAK 166 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999987 999999987421 22222221 123444444 56666667788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|++|+||||||+||+.+++.+.+.|+++. .+.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 167 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~ 230 (377)
T PRK11607 167 RPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ 230 (377)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEE
Confidence 999999999999999999999999887764 36899999999998655 99999999999975
No 208
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-44 Score=354.49 Aligned_cols=210 Identities=28% Similarity=0.485 Sum_probs=176.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCCC-HH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEFQ-LK 333 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~~-~~ 333 (478)
.++++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999963 4799999999999999999999999999999999999986 6999999999987653 45
Q ss_pred HhhcceEEEecCCCCCcccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhC--CCCccccccCCCCCCChHHHHHH
Q 048556 334 WIRGKIGLVSQEPVLFTSSIKDNINYGKD---GASIAEIMAAAELANAAKFIDSL--PQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 334 ~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
.+++.++|+||++.+|+.|++||+.++.. ..+.++..+.. .+.+..+ +..+.+.+...+.+|||||+||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 67889999999999999999999987632 12333332211 2223322 22223456677899999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~ 242 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE 242 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999988667899999999998765 99999999999975
No 209
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-44 Score=331.02 Aligned_cols=171 Identities=53% Similarity=0.908 Sum_probs=160.8
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999743 236999999999999999999999999999999999999999999999999998888778888999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556 341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420 (478)
Q Consensus 341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i 420 (478)
|++|++.+|+.|+.||+ |||||+||++||||++.+|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 048556 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGK 474 (478)
Q Consensus 421 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~ 474 (478)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999998876789999999999998899999999985
No 210
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-44 Score=352.60 Aligned_cols=208 Identities=33% Similarity=0.464 Sum_probs=175.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~~ 332 (478)
-++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 479999999999999999999999999999999999986 479999999998853 345
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCCC--C---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA--S---IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR 407 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~--~---~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qr 407 (478)
..+++.++|++|++.+|+.|++||+.++.... . .+++.++++..++.+++ +......+.+|||||+||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHH
Confidence 66788999999999999889999998764211 1 12333344444443333 233456788999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEe---------CCEEee
Q 048556 408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIH---------QGKLVE 477 (478)
Q Consensus 408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~---------~G~i~~ 477 (478)
++|||||+.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988767899999999998766 99999998 799876
No 211
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-44 Score=355.00 Aligned_cols=208 Identities=32% Similarity=0.558 Sum_probs=173.8
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC--CCHHHhhcc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE--FQLKWIRGK 338 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 338 (478)
++++|++++|++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 2469999999999999999999999999999999999999999999999999852 234567889
Q ss_pred eEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556 339 IGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 339 i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
++|+||++ .+|+.|++||+.++.. ..+.++..+ .+.+.++.+ |+.........+|||||+||++||||+
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999997 4678899999987532 122222211 122334443 454455566789999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+.+|+++||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~ 217 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK 217 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999875 37899999999998875 99999999999875
No 212
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-44 Score=333.47 Aligned_cols=172 Identities=43% Similarity=0.693 Sum_probs=159.4
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC--HHHhhcc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ--LKWIRGK 338 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~--~~~~r~~ 338 (478)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 478999999963 47999999999999999999999999999999999999999999999999998776 5677889
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 339 IGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
++|++|++.+|.+ |++||+.+. |||||+||++||||++++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 9999999998865 999999764 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGK 474 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~ 474 (478)
|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999988764 5899999999999885 99999999985
No 213
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.2e-44 Score=349.15 Aligned_cols=207 Identities=25% Similarity=0.434 Sum_probs=170.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC--CCCccEEEECCeecCCCCHHHh-hc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGVNLKEFQLKWI-RG 337 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~-r~ 337 (478)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999963 47999999999999999999999999999999999994 7999999999999988776554 44
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCC-CCChHHH
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGKDG---------ASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGT-QLSGGQK 405 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~---------~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~-~LSgGq~ 405 (478)
.++|+||++.+|++ |++||+.+.... .+.++.. ..+.+.++.+ |++. ....... .||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 59999999999987 899999764211 0111111 1223344443 4442 2334444 5999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh--cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN--ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~vl~~G~i~~ 477 (478)
||++|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~ 225 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVK 225 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999875 46899999999999876 79999999999875
No 214
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-44 Score=331.42 Aligned_cols=170 Identities=34% Similarity=0.647 Sum_probs=157.5
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 468999999963 36999999999999999999999999999999999999999999999999987765 56788999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ 419 (478)
|+||++.+|.+ |++||+. |||||+||++||||++.+|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999999987 9999984 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556 420 ILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475 (478)
Q Consensus 420 ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i 475 (478)
++||||||++||+.+.+.+.+.|+++. ++.|+|++||+++.+.. ||++++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999875 35899999999998875 999999999974
No 215
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-44 Score=362.27 Aligned_cols=211 Identities=32% Similarity=0.451 Sum_probs=173.8
Q ss_pred cEEEEeEEEECCCCC-------CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH
Q 048556 260 DIELKDIYFSYPSRP-------GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~-------~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~ 332 (478)
-|+++|+++.|+... ..++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996311 2469999999999999999999999999999999999999999999999999988765
Q ss_pred H---HhhcceEEEecCCC--CCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCCh
Q 048556 333 K---WIRGKIGLVSQEPV--LFTS-SIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSG 402 (478)
Q Consensus 333 ~---~~r~~i~~v~Q~~~--lf~~-ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSg 402 (478)
+ .+|+.++||+|++. +++. |+.+|+.... .....++. ...+.++++.+ |++ ......+.+|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAER-----REKALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHC--CCChHHhcCCCccCCH
Confidence 3 46788999999984 6654 8999886421 11122221 11223444443 443 234566789999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||+||++|||||+.+|++||+||||++||..+++.|++.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+++|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive 235 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE 235 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999988753 6899999999999976 99999999999987
No 216
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-44 Score=369.22 Aligned_cols=194 Identities=35% Similarity=0.531 Sum_probs=164.9
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh----hcceEEEecCCCCCcc-
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI----RGKIGLVSQEPVLFTS- 351 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~- 351 (478)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++..++ ++.++|+||++.+|+.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999999999988876543 4679999999999975
Q ss_pred cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 048556 352 SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429 (478)
Q Consensus 352 ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~ 429 (478)
|++||+.++... .+.++..+ .+.++++.+ |++........+||||||||++|||||+.+|++|||||||++
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~--gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERRE-----KALDALRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 999999986321 12222111 123344444 565566667789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 430 LDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 430 LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||+.+++.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~ 245 (400)
T PRK10070 195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ 245 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999998874 37899999999998765 99999999999875
No 217
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-44 Score=351.68 Aligned_cols=208 Identities=35% Similarity=0.508 Sum_probs=172.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCC--CCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKE--FQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~ 332 (478)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 4699999999999999999999999999999999999974 69999999999853 345
Q ss_pred HHhhcceEEEecCCCCCcc-cHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556 333 KWIRGKIGLVSQEPVLFTS-SIKDNINYGKDG---ASIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ 404 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~---~~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 404 (478)
..+++.++|++|++.+|+. |++||+.++... .+.+ ++.++++..++.+ ++.........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-------EVKDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHH
Confidence 5678899999999999975 999999865311 1111 2222233332211 12345566788999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEe------CCEEee
Q 048556 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIH------QGKLVE 477 (478)
Q Consensus 405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~------~G~i~~ 477 (478)
|||++||||++.+|+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 99999999999999999999999999999999999999988667899999999998765 99999997 799875
No 218
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-44 Score=350.33 Aligned_cols=208 Identities=31% Similarity=0.476 Sum_probs=172.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC--C---CccEEEECCeecCC--CCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGVNLKE--FQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~---~~G~i~~~g~~~~~--~~~ 332 (478)
-++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999963 479999999999999999999999999999999999975 4 58999999998864 334
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCC--CC-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GA-SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~-~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
..+++.++|+||++.+|+.|+++|+.++.. .. .. +++.++++..++. .++.........+|||||+
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW-------DEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc-------cchhhHHhcCcccCCHHHH
Confidence 566788999999999999999999987521 11 11 1222222222221 1233445667889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++||||++.+|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIE 227 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999988767899999999999865 99999999999975
No 219
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-44 Score=354.20 Aligned_cols=209 Identities=34% Similarity=0.524 Sum_probs=173.8
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCC--CC
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKE--FQ 331 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~--~~ 331 (478)
..++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35899999999963 479999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHhhcceEEEecCCCCCcccHHHHHhcCCCC--CC---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 048556 332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--AS---IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ 406 (478)
Q Consensus 332 ~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~~---~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q 406 (478)
...+++.++|+||++.+|+.|++||+.++... .. .+++.++++..++.+ .+...+...+.+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWD-------EVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCc-------hhHHHHhCCcccCCHHHHH
Confidence 55678899999999999988999999875311 11 122333333333221 1123456778899999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEE-EEeCCEEee
Q 048556 407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIA-VIHQGKLVE 477 (478)
Q Consensus 407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~-vl~~G~i~~ 477 (478)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~ 260 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE 260 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEE
Confidence 999999999999999999999999999999999999998766899999999999876 99975 569999975
No 220
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-44 Score=349.07 Aligned_cols=209 Identities=33% Similarity=0.520 Sum_probs=172.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC-----ccEEEECCeecCC--CCHH
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGVNLKE--FQLK 333 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-----~G~i~~~g~~~~~--~~~~ 333 (478)
++++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.+ .+..
T Consensus 5 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 5 LSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 789999999963 47999999999999999999999999999999999999874 8999999999865 3445
Q ss_pred HhhcceEEEecCCCCCcc-cHHHHHhcCCC--CC-CHHHHHHHHHHhcHHHHHHhC--CCCccccccCCCCCCChHHHHH
Q 048556 334 WIRGKIGLVSQEPVLFTS-SIKDNINYGKD--GA-SIAEIMAAAELANAAKFIDSL--PQGLDTMVGEHGTQLSGGQKQR 407 (478)
Q Consensus 334 ~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~-~~~~~~~a~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGq~Qr 407 (478)
.+|+.++|++|++.+|+. |++||+.++.. .. ..++..+.++ +.+..+ ..++.........+|||||+||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE-----RSLRGAALWDEVKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHHcCcchhhhhhhcCCcccCCHHHHHH
Confidence 678889999999999985 99999986532 11 2222222211 111111 1112223345578999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVE 227 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999988767999999999999886 99999999999975
No 221
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-44 Score=352.37 Aligned_cols=212 Identities=25% Similarity=0.383 Sum_probs=176.9
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC--------ccEEEECCeecCCCCH
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ--------AGEVLIDGVNLKEFQL 332 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--------~G~i~~~g~~~~~~~~ 332 (478)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 689999999963 47999999999999999999999999999999999999998 9999999999988887
Q ss_pred HHhhcceEEEecCCC-CCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556 333 KWIRGKIGLVSQEPV-LFTSSIKDNINYGKD-GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI 410 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~-lf~~ti~eNl~~~~~-~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l 410 (478)
..+++.++|+||++. +|..|++||+.++.. ...............+.+.++.+ |+++.++....+|||||+||++|
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA--GATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHH
Confidence 788888999999986 567899999987631 11000000000111123444444 67777778889999999999999
Q ss_pred HHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 411 ARAIL---------KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 411 ARall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||||+ .+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|++++
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~ 235 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVA 235 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEE
Confidence 99999 59999999999999999999999999998753 6899999999998865 99999999999875
No 222
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-44 Score=343.70 Aligned_cols=199 Identities=30% Similarity=0.503 Sum_probs=168.3
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++||+++|++ .+ .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 689999999963 22 399999999999999999999999999999999999999999999998766542 56899
Q ss_pred EEecCCCCCcc-cHHHHHhcCC-CCC--C---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 341 LVSQEPVLFTS-SIKDNINYGK-DGA--S---IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~-~~~--~---~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
|+||++.+|++ |++||+.++. +.. . ++++.++++..+ ++..+......|||||+||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMG-----------IEDLLARLPGQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcC-----------cHHHHhCCcccCCHHHHHHHHHHHH
Confidence 99999999986 9999998753 211 1 223344444444 4444455567899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++++|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~ 210 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAW 210 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999988743 6899999999998865 99999999999874
No 223
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-44 Score=351.76 Aligned_cols=208 Identities=32% Similarity=0.486 Sum_probs=174.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCC--CCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKE--FQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~ 332 (478)
.++++|++++|++ +++++|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 5899999999963 4699999999999999999999999999999999999985 48999999998854 344
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG---ASI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~---~~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
..+++.++|+||++.+|+.|++||+.++... ..+ +.+.++++..++.+.+ .......+..|||||+
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-------KDKLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHHH
Confidence 5678899999999999999999999875311 111 1233344444433222 2344567889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEe-----CCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIH-----QGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~-----~G~i~~ 477 (478)
||++|||||+++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 9999999999999999999999999999999999999988767899999999999876 99999997 599875
No 224
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.3e-44 Score=346.81 Aligned_cols=205 Identities=35% Similarity=0.553 Sum_probs=173.8
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999963 469999999999999999999999999999999999999999999999999876543 367899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|+||++.+|++ |++||+.++... .+..+.. ..+.++++.+ |+.........+|||||+||++||||++++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999986 999999876431 1111111 1234455555 344445566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+++||||||++||+.+++.+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~ 211 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ 211 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE
Confidence 999999999999999999999999998754 6899999999998766 99999999999975
No 225
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-44 Score=351.36 Aligned_cols=210 Identities=32% Similarity=0.485 Sum_probs=177.1
Q ss_pred CccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecC----
Q 048556 258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLK---- 328 (478)
Q Consensus 258 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~---- 328 (478)
.+.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 356999999999963 4799999999999999999999999999999999999875 7999999998774
Q ss_pred CCCHHHhhcceEEEecCCCCCcccHHHHHhcCCC--CCC-----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556 329 EFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GAS-----IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401 (478)
Q Consensus 329 ~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~~-----~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 401 (478)
..+...+++.++|+||++.+|.+|++||+.++.. ... ++++.++++.+++.+ ++.+.++....+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCC
Confidence 2344567889999999999999999999987531 111 233344444433322 33455667788999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||+||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIE 240 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988767899999999999865 99999999999975
No 226
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.4e-44 Score=344.86 Aligned_cols=205 Identities=35% Similarity=0.543 Sum_probs=172.9
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. ++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceE
Confidence 468999999963 4699999999999999999999999999999999999999999999999998876543 67899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|++|++.+|.+ |++||+.++... .+.+...+ .+.+.++.+ |++..+.....+|||||+||++||||++.+
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKE-----RVAEALDLV--QLEGYANRKPSQLSGGQQQRVAIARALVNE 148 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 999999875311 11111111 122333333 555556666789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~ 211 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ 211 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999999999999999998753 7899999999998765 99999999999875
No 227
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-44 Score=339.76 Aligned_cols=203 Identities=33% Similarity=0.506 Sum_probs=171.0
Q ss_pred EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC----CHHHhhc
Q 048556 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF----QLKWIRG 337 (478)
Q Consensus 262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~~r~ 337 (478)
++ |++++|++ +.+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++... +....++
T Consensus 3 ~~-~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 44 89999964 234 99999999 99999999999999999999999999999999999987643 2335678
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
.++|+||++.+|+. |++||+.++......++ ....+.++++.+ |++......+.+||||||||++||||++.
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 89999999999975 99999987643222211 112234566665 67767778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~ 478 (478)
+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYI 213 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999988753 6899999999998865 999999999999763
No 228
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-44 Score=347.44 Aligned_cols=207 Identities=31% Similarity=0.536 Sum_probs=174.9
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCCC--CHH
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKEF--QLK 333 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~~--~~~ 333 (478)
++++||++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +..
T Consensus 4 l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 4 IEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 789999999963 479999999999999999999999999999999999864 4899999999998653 456
Q ss_pred HhhcceEEEecCCCCCcccHHHHHhcCCC--CC-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 048556 334 WIRGKIGLVSQEPVLFTSSIKDNINYGKD--GA-SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ 406 (478)
Q Consensus 334 ~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~-~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q 406 (478)
.+++.++|+||++.+|+.|++||+.++.. .. +. +++.++++..++.+++. ..++..+.+|||||+|
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHHH
Confidence 67889999999999999999999987531 11 11 22333444444433332 2345678899999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||++..+.. ||++++|++|++++
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~ 225 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIE 225 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEE
Confidence 999999999999999999999999999999999999988777899999999998776 89999999999975
No 229
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-44 Score=361.25 Aligned_cols=209 Identities=27% Similarity=0.393 Sum_probs=169.0
Q ss_pred EEEEeEEEECCCCCC-CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC----CCccEEEECCeecCCCCHHHh
Q 048556 261 IELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD----PQAGEVLIDGVNLKEFQLKWI 335 (478)
Q Consensus 261 i~~~~v~~~y~~~~~-~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~----~~~G~i~~~g~~~~~~~~~~~ 335 (478)
++++|+++.|+.... .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.+++.+++
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 789999999964321 369999999999999999999999999999999999997 489999999999988887665
Q ss_pred h----cceEEEecCCC--CCcc-cHHHHHh----cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc---ccccCCCCCCC
Q 048556 336 R----GKIGLVSQEPV--LFTS-SIKDNIN----YGKDGASIAEIMAAAELANAAKFIDSLPQGLD---TMVGEHGTQLS 401 (478)
Q Consensus 336 r----~~i~~v~Q~~~--lf~~-ti~eNl~----~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~---t~~~~~g~~LS 401 (478)
+ +.++||||++. +++. |+.+|+. .... ...++.. ..+.++++.+ |++ ..+...+.+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~-~~~~~~~-----~~~~~~L~~~--gL~~~~~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQG-GNKKTRR-----QRAIDLLNQV--GIPDPASRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcC-CCHHHHH-----HHHHHHHHHC--CCCChHHHHhCCchhCC
Confidence 4 36999999985 4443 6655543 2211 1211111 1122334433 443 34567789999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||+||++|||||+.+|+++|+||||++||+.++..+++.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998753 6899999999999865 99999999999987
No 230
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-44 Score=336.31 Aligned_cols=189 Identities=22% Similarity=0.395 Sum_probs=162.4
Q ss_pred cEEEEeEEEECCCC-CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC---CCccEEEECCeecCCCCHHHh
Q 048556 260 DIELKDIYFSYPSR-PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGVNLKEFQLKWI 335 (478)
Q Consensus 260 ~i~~~~v~~~y~~~-~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~ 335 (478)
.+.++||+|.|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999753 34579999999999999999999999999999999999999 89999999999987764 356
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556 336 RGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 336 r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
++.++|++|++.+|.+ |++||+.++... . ..+....|||||+||++||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~----------~------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC----------K------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh----------c------------------cccchhhCCHHHHHHHHHHHHH
Confidence 7889999999988875 999999764210 0 2345578999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEec-Cchhh-hhcCEEEEEeCCEEee
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAH-RLSTV-RNADLIAVIHQGKLVE 477 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH-~~~~~-~~~d~i~vl~~G~i~~ 477 (478)
+++|+++||||||++||+.+++.+.+.|+++.+ +.|+|+++| +++.+ +.||++++|++|++++
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 999999999999999999999999999998754 457666655 45665 4599999999999975
No 231
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-44 Score=355.02 Aligned_cols=208 Identities=31% Similarity=0.466 Sum_probs=172.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCCC--CH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKEF--QL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~~--~~ 332 (478)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 5899999999963 369999999999999999999999999999999999864 4999999999988643 33
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCC--CC-CHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GA-SIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~-~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
..+|+.++|++|++.+|+.|++||+.++.. .. +.+ ++.++++..++.+ ++..........|||||+
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-------EVSDRLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc-------chhhHhhCChhhCCHHHH
Confidence 456889999999999998899999997532 11 111 2222232222211 122344567889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~ 261 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVE 261 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999988767899999999999865 99999999999875
No 232
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7e-44 Score=330.14 Aligned_cols=209 Identities=26% Similarity=0.430 Sum_probs=182.7
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcce
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 339 (478)
++++|++..|.. .++|+++||++++||+++++||||+|||||++.|+|+.+|.+|+|.++|.|++..++.+. |.-+
T Consensus 4 L~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 4 LEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred eeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 789999999963 579999999999999999999999999999999999999999999999999999987765 6669
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
+||||...+|+. ||.|||.+|.....+++- ....+++..+-+| -+.......+.+|||||+|.+||||||+.+|
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCC
Confidence 999999999987 999999998533222111 1111445566777 4778888999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556 419 RILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVR-NADLIAVIHQGKLVE 477 (478)
Q Consensus 419 ~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~ 477 (478)
++|+|||||.+|-|.-.++|++.|+++++ +-||++|-++....- -+||.+||++|+|+.
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~ 217 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVL 217 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEE
Confidence 99999999999999999999999999874 459999999998765 499999999999985
No 233
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3.7e-44 Score=358.49 Aligned_cols=194 Identities=22% Similarity=0.445 Sum_probs=165.5
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHH
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIK 354 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 354 (478)
+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.++|+||++.+|+. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 479999999999999999999999999999999999999999999999999876 345678899999999999986 999
Q ss_pred HHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 048556 355 DNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432 (478)
Q Consensus 355 eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~ 432 (478)
||+.+... ..+.++..+ .+.+.++.+ |+.........+||||||||++|||||+++|+++||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEE-----RAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 99987431 112222111 123445554 555556667789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 433 ESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 433 ~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
.+++.+++.|+++. +++|+|++||+++.+.. ||+|++|++|++++
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~ 204 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA 204 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999875 46899999999999876 99999999999874
No 234
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=8.2e-44 Score=348.36 Aligned_cols=208 Identities=28% Similarity=0.441 Sum_probs=174.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee-----cCCCCHHH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN-----LKEFQLKW 334 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~-----~~~~~~~~ 334 (478)
-++++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 3899999999963 479999999999999999999999999999999999999999999999998 77766544
Q ss_pred ----hhcceEEEecCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChH
Q 048556 335 ----IRGKIGLVSQEPV--LFT-SSIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGG 403 (478)
Q Consensus 335 ----~r~~i~~v~Q~~~--lf~-~ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgG 403 (478)
.++.++|+||++. ++. .|+.+|+.+.. ......+.. ..+.++++.+ |++ +.++..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 444 38888886421 111112221 1235667766 454 4677889999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+||++|||||+.+|+++||||||++||+.+++.+.+.|+++.+ +.|+|++||+++.+.. ||+|++|++|++++
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999988753 6899999999999975 99999999999975
No 235
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=5.5e-44 Score=360.42 Aligned_cols=212 Identities=25% Similarity=0.435 Sum_probs=172.6
Q ss_pred cEEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC---ccEEEECCeecCCCCHHHh
Q 048556 260 DIELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVNLKEFQLKWI 335 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~ 335 (478)
-++++|+++.|+... ..++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 489999999996321 246999999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----cceEEEecCC--CCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHH--hCCCCccccccCCCCCCChH
Q 048556 336 R----GKIGLVSQEP--VLFTS-SIKDNINYGK---DGASIAEIMAAAELANAAKFID--SLPQGLDTMVGEHGTQLSGG 403 (478)
Q Consensus 336 r----~~i~~v~Q~~--~lf~~-ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~--~lp~g~~t~~~~~g~~LSgG 403 (478)
+ +.|+||||++ .+++. |+.+|+.... ...+.++..+. +.+.++ .+|++. ..++..+.+||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~-----~~~~L~~vgL~~~~-~~~~~~p~~LSgG 165 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEE-----SVRMLDAVKMPEAR-KRMKMYPHEFSGG 165 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCCChH-HHhcCCcccCCHH
Confidence 3 4799999998 45554 7877775321 11232222111 112222 234332 3457788999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+||++|||||+.+|+++|+||||++||..++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive 242 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999988754 6899999999999875 99999999999987
No 236
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-43 Score=349.07 Aligned_cols=208 Identities=33% Similarity=0.452 Sum_probs=174.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCC--CCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKE--FQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~--~~~ 332 (478)
-|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 5999999999963 4699999999999999999999999999999999999863 58999999999854 344
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA-----SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR 407 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qr 407 (478)
..+|+.++|+||++.+|+.|++||+.++.... .++++.++++.+++.+.+ .......+..|||||+||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHHHH
Confidence 56788999999999999889999998763211 122233344444433222 234456778999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEe---------CCEEee
Q 048556 408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIH---------QGKLVE 477 (478)
Q Consensus 408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~---------~G~i~~ 477 (478)
++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777899999999998865 99999997 799875
No 237
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=9.6e-44 Score=348.65 Aligned_cols=213 Identities=26% Similarity=0.416 Sum_probs=174.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC---ccEEEECCeecCCC-----C
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVNLKEF-----Q 331 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~-----~ 331 (478)
-++++||++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 3899999999963 47999999999999999999999999999999999999986 49999999988653 2
Q ss_pred HHHhhcceEEEecCCCCCcc-cHHHHHhcCCCCCCH--H---HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 332 LKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASI--A---EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 332 ~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~--~---~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
...+++.++|+||++.+|++ |++||+.++...... . ..........+.+.++.+ |++.........||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence 35567889999999998885 999999876421100 0 000001112234455544 555556677889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~ 233 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFY 233 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999998753 6899999999998654 99999999999864
No 238
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-43 Score=348.27 Aligned_cols=208 Identities=31% Similarity=0.496 Sum_probs=174.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC-----ccEEEECCeecCC--CCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGVNLKE--FQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-----~G~i~~~g~~~~~--~~~ 332 (478)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 7 ~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 5999999999963 36999999999999999999999999999999999999985 8999999998753 344
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDG--A-SI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~--~-~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
..+++.++|+||++.+|+.|++||+.++... . +. +++.++++..++.++ ++...++.+..|||||+
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDE-------IKHKIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch-------hhhHhcCCcccCCHHHH
Confidence 5678889999999999999999999875211 1 11 123333333333222 22345677889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeC-----CEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ-----GKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~-----G~i~~ 477 (478)
||++||||++++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998864 47899999999998876 999999999 99875
No 239
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=6.3e-44 Score=337.37 Aligned_cols=198 Identities=31% Similarity=0.500 Sum_probs=164.2
Q ss_pred EEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH----HHhhcc
Q 048556 263 LKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL----KWIRGK 338 (478)
Q Consensus 263 ~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~r~~ 338 (478)
++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4789999963 479999999999999999999999999999999999999999999999999764432 245778
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 339 IGLVSQEPVLFT-SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 339 i~~v~Q~~~lf~-~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
++|++|++.+|+ .|++||+.++... ...++.. ..+.++++.+ |++........+|||||+||++|||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKR-----EKKKEALEKV--GLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999999997 5999999875321 1111111 1123344444 5555556677899999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEE
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVI 470 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl 470 (478)
.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++..+.||++++|
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999998875 468999999999988889999875
No 240
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=361.45 Aligned_cols=200 Identities=31% Similarity=0.527 Sum_probs=169.6
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC----CHHHhh
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF----QLKWIR 336 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~~r 336 (478)
+++ |++++|++ . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 566 89999963 2 23 89999999999999999999999999999999999999999999998653 233457
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 337 GKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+.++|++|++.+|+. |++||+.++......+++.+ +++.+ |++........+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~---------~l~~~--gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDK---------IVALL--GIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHH---------HHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 889999999999975 99999998754322333333 33433 5555566677899999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|++++
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~ 209 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKA 209 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999988753 6899999999998766 99999999999875
No 241
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.6e-43 Score=346.42 Aligned_cols=211 Identities=24% Similarity=0.412 Sum_probs=170.4
Q ss_pred cEEEEeEEEECCCC------CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH
Q 048556 260 DIELKDIYFSYPSR------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK 333 (478)
Q Consensus 260 ~i~~~~v~~~y~~~------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~ 333 (478)
-|+++||+++|++. ...++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999531 124799999999999999999999999999999999999999999999999998765555
Q ss_pred HhhcceEEEecCCC--CCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHH
Q 048556 334 WIRGKIGLVSQEPV--LFTS-SIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQ 406 (478)
Q Consensus 334 ~~r~~i~~v~Q~~~--lf~~-ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Q 406 (478)
..++.++|+||++. +++. |+.+|+.+.. .....++..+ .+.+.++.+ |++ ........+|||||+|
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~~q 156 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREK-----QIIETLRQV--GLLPDHASYYPHMLAPGQKQ 156 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CCChHHHhcCchhcCHHHHH
Confidence 56678999999985 4554 8999987532 1111111111 112333333 332 2233456789999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|++||||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 157 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~ 230 (267)
T PRK15112 157 RLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE 230 (267)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999998753 6899999999999887 99999999999875
No 242
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-43 Score=341.89 Aligned_cols=204 Identities=31% Similarity=0.550 Sum_probs=171.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+++|++++|++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 468999999962 38999999999999999999999999999999999999999999999999877654 367899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFT-SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~-~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|+||++.+|+ .|++||+.++... .+..+..+ .+.+.++.+ |+...+.....+|||||+||++||||++++
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~~ 147 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIER-----KVLEIAEML--GIDHLLNRKPETLSGGEQQRVAIARALVVN 147 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHHhcCcccCCHHHHHHHHHHHHHHcC
Confidence 9999999996 5999999875322 11111111 112233333 444445566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|++++|||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||++++|++|++++
T Consensus 148 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 148 PKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998753 7899999999998876 99999999999975
No 243
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-43 Score=346.57 Aligned_cols=208 Identities=32% Similarity=0.386 Sum_probs=175.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCC--CH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEF--QL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~--~~ 332 (478)
.+.++++++.|.+ .++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999953 4799999999999999999999999999999999999986 799999999998643 34
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA-----SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR 407 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qr 407 (478)
..+++.++|+||++.+|..|++||+.++.... ..+++.++++..++.+.+ ....++...+|||||+||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEV-------KDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHHH
Confidence 46788899999999999889999998764211 123444455554443322 223456778999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEe--------CCEEee
Q 048556 408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIH--------QGKLVE 477 (478)
Q Consensus 408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~--------~G~i~~ 477 (478)
++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~ 236 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE 236 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE
Confidence 99999999999999999999999999999999999988767899999999998765 99999996 899876
No 244
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-43 Score=353.68 Aligned_cols=209 Identities=31% Similarity=0.534 Sum_probs=175.5
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-----CCccEEEECCeecCCC--C
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGVNLKEF--Q 331 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-----~~~G~i~~~g~~~~~~--~ 331 (478)
..|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999963 479999999999999999999999999999999999986 6899999999998643 3
Q ss_pred HHHhhcceEEEecCCCCCcccHHHHHhcCCCCC--------------C-----HHHHHHHHHHhcHHHHHHhCCCCcccc
Q 048556 332 LKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA--------------S-----IAEIMAAAELANAAKFIDSLPQGLDTM 392 (478)
Q Consensus 332 ~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~--------------~-----~~~~~~a~~~~~~~~~i~~lp~g~~t~ 392 (478)
...+|+.++|+||++.+|++|++||+.++.... . .+++.++++.. .++.++.+.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQA-------ALWDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHc-------CCchhhhHH
Confidence 556788999999999999999999999763210 0 11122222222 223344566
Q ss_pred ccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEE-EEE
Q 048556 393 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLI-AVI 470 (478)
Q Consensus 393 ~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i-~vl 470 (478)
+...+.+|||||+||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 67888999999999999999999999999999999999999999999999998767899999999999766 9997 567
Q ss_pred eCCEEee
Q 048556 471 HQGKLVE 477 (478)
Q Consensus 471 ~~G~i~~ 477 (478)
++|++++
T Consensus 274 ~~G~i~~ 280 (305)
T PRK14264 274 TGGELVE 280 (305)
T ss_pred cCCEEEE
Confidence 9999975
No 245
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.6e-43 Score=361.28 Aligned_cols=195 Identities=28% Similarity=0.438 Sum_probs=163.0
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCe----ecCCCCHHHh---h-cceEEEecCCC
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV----NLKEFQLKWI---R-GKIGLVSQEPV 347 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~----~~~~~~~~~~---r-~~i~~v~Q~~~ 347 (478)
..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|. ++...+.+.+ | +.++||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 46899999999999999999999999999999999999999999999996 5666665544 3 57999999999
Q ss_pred CCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 048556 348 LFT-SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 424 (478)
Q Consensus 348 lf~-~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililD 424 (478)
+|+ .|++||+.++... .+.++.. ..+.++++.+ |++........+|||||+||++|||||+.+|++||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~-----~~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERR-----KRVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 998 5999999986421 1222211 1123334443 5555556667889999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 425 EATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 425 Epts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||||+||+.+++.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~ 245 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ 245 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999988753 6899999999998754 99999999999976
No 246
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-43 Score=357.10 Aligned_cols=210 Identities=22% Similarity=0.368 Sum_probs=171.1
Q ss_pred EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC----CCccEEEECCeecCCCCHHHh
Q 048556 261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD----PQAGEVLIDGVNLKEFQLKWI 335 (478)
Q Consensus 261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~----~~~G~i~~~g~~~~~~~~~~~ 335 (478)
++++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.+++.+++
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 78999999996321 2469999999999999999999999999999999999986 589999999999988876654
Q ss_pred h----cceEEEecCCC--CCc-ccHHHHHhcCCC---CC-----CHHHHHHHHHHhcHHHHHHhCCCCcc---ccccCCC
Q 048556 336 R----GKIGLVSQEPV--LFT-SSIKDNINYGKD---GA-----SIAEIMAAAELANAAKFIDSLPQGLD---TMVGEHG 397 (478)
Q Consensus 336 r----~~i~~v~Q~~~--lf~-~ti~eNl~~~~~---~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~---t~~~~~g 397 (478)
+ +.|+||||++. +++ .|+.+|+..... .. ..++. ...+.+.++.+ |++ .......
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~~~--gL~~~~~~~~~~p 156 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR-----KRRAIELLHRV--GIKDHKDAMRSFP 156 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHH-----HHHHHHHHHHC--CCCChHHHHhCCc
Confidence 3 47999999986 344 389999864210 00 10111 11123444444 443 2345677
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556 398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGK 474 (478)
Q Consensus 398 ~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~ 474 (478)
.+|||||+||++|||||+.+|+++|+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ 236 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQ 236 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999998764 6899999999999976 99999999999
Q ss_pred Eee
Q 048556 475 LVE 477 (478)
Q Consensus 475 i~~ 477 (478)
|+|
T Consensus 237 ive 239 (330)
T PRK15093 237 TVE 239 (330)
T ss_pred EEE
Confidence 987
No 247
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.5e-43 Score=328.63 Aligned_cols=172 Identities=23% Similarity=0.447 Sum_probs=156.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 338 (478)
-++++|++++| +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +..++.
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38999999987 7999999999999999999999999999999999999999999999999988763 456788
Q ss_pred eEEEecCC---CCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556 339 IGLVSQEP---VLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 339 i~~v~Q~~---~lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
++|++|++ .++. .|++||+.++.. ||||||||++||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHH
Confidence 99999995 3554 699999987421 999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i 475 (478)
+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999875 46899999999998877 999999999975
No 248
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2e-43 Score=338.16 Aligned_cols=199 Identities=29% Similarity=0.473 Sum_probs=168.7
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999963 47999999999999999999999999999999999999999999999999875422 35799
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFT-SSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~-~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|+||++.+|. .|++||+.++.. ...++++.+.++.. |++........+|||||+||++||||++.+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIV-----------DLTNTGKKKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHc-----------CCcHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999999887 499999986431 12233444444333 444444556688999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~ 204 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGY 204 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE
Confidence 99999999999999999999999999875 46899999999998865 99999999999875
No 249
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.3e-43 Score=346.91 Aligned_cols=213 Identities=31% Similarity=0.478 Sum_probs=176.2
Q ss_pred EEEEeEEEECCCC------CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH--
Q 048556 261 IELKDIYFSYPSR------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-- 332 (478)
Q Consensus 261 i~~~~v~~~y~~~------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-- 332 (478)
|+++||+|.|++. .++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 7899999999631 02579999999999999999999999999999999999999999999999999887664
Q ss_pred -HHhhcceEEEecCCC--CCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHH
Q 048556 333 -KWIRGKIGLVSQEPV--LFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQR 407 (478)
Q Consensus 333 -~~~r~~i~~v~Q~~~--lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qr 407 (478)
..+++.++|++|++. ++. .|+++|+.+...... ..........+.+.+..+ |+++ .....+..|||||+||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge~qr 159 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAV--DLDDSVLDKRPPQLSGGQLQR 159 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHc--CCChhHhhCCCccCChHHHHH
Confidence 346788999999983 444 599999865321000 000111222345566665 7764 5677889999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++|||||+.+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 160 l~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 9999999999999999999999999999999999988753 6899999999999875 99999999999875
No 250
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.6e-43 Score=322.17 Aligned_cols=164 Identities=29% Similarity=0.476 Sum_probs=151.1
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+++|++++|+++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +.++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 4789999999632 47999999999999999999999999999999999999999999999873 6799
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556 341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420 (478)
Q Consensus 341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i 420 (478)
|++|++.+++.|++||+.++ ....||||||||++||||++++|++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EECCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999888999999864 2478999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 048556 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGK 474 (478)
Q Consensus 421 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~ 474 (478)
+||||||++||+.+++.+.+.+++. ++|+|++||+++....||++++|++|.
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999999999999999999999886 589999999999887899999998864
No 251
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.4e-43 Score=359.58 Aligned_cols=201 Identities=32% Similarity=0.530 Sum_probs=170.7
Q ss_pred eEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC----HHHhhcceE
Q 048556 265 DIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ----LKWIRGKIG 340 (478)
Q Consensus 265 ~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~r~~i~ 340 (478)
|++++|++ .. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....++.++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999963 23 4 999999999999999999999999999999999999999999999986532 234578899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ 419 (478)
|+||++.+|+. |++||+.++.......+. ...+.++++.+ |++........+||||||||++|||||+.+|+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999986 999999987533222221 11234455555 67777778889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 420 ILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 420 ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~ 212 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA 212 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999998753 6899999999998866 99999999999875
No 252
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2.3e-43 Score=330.59 Aligned_cols=181 Identities=29% Similarity=0.500 Sum_probs=160.6
Q ss_pred cEEEEeEEEECCCC---CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC--CCCccEEEECCeecCCCCHHH
Q 048556 260 DIELKDIYFSYPSR---PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGVNLKEFQLKW 334 (478)
Q Consensus 260 ~i~~~~v~~~y~~~---~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~ 334 (478)
.++++|++|+|++. .++++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999741 0257999999999999999999999999999999999999 9999999999998864 25
Q ss_pred hhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 335 IRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 335 ~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
+++.++|+||++.+|.+ |++||+.++.. + . .|||||+||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~----------~----------------~--------~LS~G~~qrv~lara 125 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK----------L----------------R--------GLSGGERKRVSIALE 125 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH----------h----------------c--------cCCHHHHHHHHHHHH
Confidence 67889999999999875 99999965310 0 0 899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCch-hhh-hcCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLS-TVR-NADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~-~~d~i~vl~~G~i~~ 477 (478)
++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+. .||++++|++|++++
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 999999999999999999999999999998875 4789999999996 454 499999999999875
No 253
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-43 Score=329.45 Aligned_cols=180 Identities=27% Similarity=0.442 Sum_probs=159.3
Q ss_pred cEEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC--CCCccEEEECCeecCCCCHHHhh
Q 048556 260 DIELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGVNLKEFQLKWIR 336 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~r 336 (478)
.++++|++|.|++.. ++++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997421 247999999999999999999999999999999999986 489999999999875 4567
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 337 GKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+.++|++|++.+|.+ |++||+.++.. ++ +|||||+||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL----------LR------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH----------Hh------------------------cCCHHHhHHHHHHHHHh
Confidence 889999999998886 99999985310 00 89999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchh--hhhcCEEEEEeC-CEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLST--VRNADLIAVIHQ-GKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~vl~~-G~i~~ 477 (478)
.+|+++||||||++||+.+.+.+++.|+++. +++|+|++||+++. .+.||++++|++ |++++
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY 190 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence 9999999999999999999999999999875 46899999999983 456999999999 99986
No 254
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-43 Score=342.08 Aligned_cols=208 Identities=30% Similarity=0.516 Sum_probs=173.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECC------eecCCCCHH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG------VNLKEFQLK 333 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g------~~~~~~~~~ 333 (478)
.++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++.+.+..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5899999999963 4799999999999999999999999999999999999999997666655 666666777
Q ss_pred HhhcceEEEecCCCCCcc-cHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhCCCCcc----ccccCCCCCCChHHH
Q 048556 334 WIRGKIGLVSQEPVLFTS-SIKDNINYGKDG--A-SIAEIMAAAELANAAKFIDSLPQGLD----TMVGEHGTQLSGGQK 405 (478)
Q Consensus 334 ~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~--~-~~~~~~~a~~~~~~~~~i~~lp~g~~----t~~~~~g~~LSgGq~ 405 (478)
++|+.++|+||++.+|.+ |++||+.++... . ..++..+. +.+.++.+ |++ ......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~l~~~~~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI-----VEECLRKV--GLWKEVYDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHc--CCCccchhhhcCCcccCCHHHH
Confidence 788999999999999986 999999976321 1 22222111 12223322 332 344567889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVR-NADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~ 477 (478)
||++||||++.+|+++||||||++||+.+++.+.+.|.++.+++|+|++||+++.+. .||++++|++|++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~ 232 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVE 232 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999998876799999999999985 499999999999875
No 255
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=6.5e-43 Score=329.15 Aligned_cols=178 Identities=30% Similarity=0.487 Sum_probs=159.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc--CCCCccEEEECCeecCCCCHHHh-hc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGVNLKEFQLKWI-RG 337 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~ 337 (478)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... ++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999963 4799999999999999999999999999999999999 58999999999999988876554 45
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
.++|+||++.+|++ |+++|+ .. ....|||||+||++||||+++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~~-----------~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------RY-----------VNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------hh-----------ccccCCHHHHHHHHHHHHHhc
Confidence 69999999999886 666665 00 124799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhh--hcCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVR--NADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~--~~d~i~vl~~G~i~~ 477 (478)
+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 185 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVK 185 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEE
Confidence 9999999999999999999999999998754 689999999999988 599999999999875
No 256
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=8.9e-43 Score=328.51 Aligned_cols=195 Identities=24% Similarity=0.355 Sum_probs=165.8
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|+++.|++ +++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 478999999963 46999999999999999999999999999999999999999999999999986543 46788999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556 341 LVSQEPVLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419 (478)
Q Consensus 341 ~v~Q~~~lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ 419 (478)
|+||++.++. .|++||+.+..+...++++.++++..++.++ ......+|||||+||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-----------EDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999998875 6999999886544444555555555554432 234467899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhh-hhcCEEEEE
Q 048556 420 ILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTV-RNADLIAVI 470 (478)
Q Consensus 420 ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~-~~~d~i~vl 470 (478)
++||||||++||+.+++.+.+.|++.. +++|+|++||+...+ ..+++++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998765 478999999987755 458999877
No 257
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.6e-43 Score=325.47 Aligned_cols=175 Identities=34% Similarity=0.585 Sum_probs=156.4
Q ss_pred EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEE
Q 048556 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL 341 (478)
Q Consensus 262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 341 (478)
+++|++|+|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999963 469999999999999999999999999999999999999999999999999988888888888999
Q ss_pred EecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEE
Q 048556 342 VSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRIL 421 (478)
Q Consensus 342 v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~il 421 (478)
++| +++..++.++ +...+..|||||+||++||||++++|+++
T Consensus 78 ~~q---------------------------~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 78 VPQ---------------------------ALELLGLAHL-----------ADRPFNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred HHH---------------------------HHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999 3444444433 33456889999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 422 LLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 422 ilDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999988754 6899999999999854 99999999999875
No 258
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.2e-42 Score=338.91 Aligned_cols=211 Identities=25% Similarity=0.434 Sum_probs=171.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc--CCCCccEEEECCeecCCCCHHHhhc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGVNLKEFQLKWIRG 337 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~r~ 337 (478)
-++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+....++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999963 4699999999999999999999999999999999998 6899999999999998887666554
Q ss_pred -ceEEEecCCCCCcc-cHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCC-CCChHHHHH
Q 048556 338 -KIGLVSQEPVLFTS-SIKDNINYGKDGA------SIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGT-QLSGGQKQR 407 (478)
Q Consensus 338 -~i~~v~Q~~~lf~~-ti~eNl~~~~~~~------~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~-~LSgGq~Qr 407 (478)
.++|++|++.+|++ |+.+|+.++.... .+.+..+. ...+.+.+..+ |+. +.+..... .|||||+||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qr 159 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEF--LEIINEKLKLV--GMDPSFLSRNVNEGFSGGEKKR 159 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHH--HHHHHHHHHHc--CCchhhhccccccCCCHHHHHH
Confidence 48999999999987 8999987642100 00000000 01123334433 443 34455555 599999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh--cCEEEEEeCCEEee
Q 048556 408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN--ADLIAVIHQGKLVE 477 (478)
Q Consensus 408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~vl~~G~i~~ 477 (478)
++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999998875 47899999999998875 89999999999875
No 259
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=9.9e-43 Score=339.69 Aligned_cols=208 Identities=27% Similarity=0.406 Sum_probs=173.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee-----cCCCCHHH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN-----LKEFQLKW 334 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~-----~~~~~~~~ 334 (478)
-++++|++++|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+..+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999963 368999999999999999999999999999999999999999999999987 66666543
Q ss_pred h----hcceEEEecCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChH
Q 048556 335 I----RGKIGLVSQEPV--LFT-SSIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGG 403 (478)
Q Consensus 335 ~----r~~i~~v~Q~~~--lf~-~ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgG 403 (478)
. ++.++|++|++. ++. .|+.+|+.+.. ......+. ...+.++++.+ |++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 2 467999999985 333 48888885421 00111111 12345677777 564 5778889999999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+||++|||||+.+|+++||||||++||+.+++.+.+.|++..+ +.|+|++||+++.+.. ||++++|++|++++
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999988642 6899999999999875 99999999999975
No 260
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.7e-42 Score=315.86 Aligned_cols=159 Identities=33% Similarity=0.578 Sum_probs=148.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcce
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i 339 (478)
++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +..++.+
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 478999999963 479999999999999999999999999999999999999999999999999988775 4467789
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556 340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419 (478)
Q Consensus 340 ~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ 419 (478)
+|++| |||||+||++||||++++|+
T Consensus 78 ~~~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 78 AMVYQ-------------------------------------------------------LSVGERQMVEIARALARNAR 102 (163)
T ss_pred EEEEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 420 ILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 420 ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998875 47899999999998765 99999999999986
No 261
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.7e-43 Score=308.47 Aligned_cols=213 Identities=29% Similarity=0.409 Sum_probs=180.5
Q ss_pred cEEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh---
Q 048556 260 DIELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI--- 335 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~--- 335 (478)
-|++++++++.+... ..++|++++|.|++||.+|||||||||||||+-+++|+.+|++|+|.+.|+++.+++.+..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 478888888876432 2368999999999999999999999999999999999999999999999999999886543
Q ss_pred -hcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 336 -RGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 336 -r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
.+++++|+|..+|.+. |..||+.+...-..+.. +-......+++... |+...+...+.+|||||+||+|||||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~v--GLg~Rl~HyP~qLSGGEQQRVAiARA 160 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESS---ADSRAGAKALLEAV--GLGKRLTHYPAQLSGGEQQRVALARA 160 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHh--CcccccccCccccCchHHHHHHHHHH
Confidence 4679999999999876 99999987643222100 00111223455554 78888888899999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+...|++|+-||||-+||.+|.++|.+.+..+. .+.|.++|||++.....|||++-|.+|++++
T Consensus 161 fa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 161 FAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred hcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999997765 3679999999999999999999999999986
No 262
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.2e-42 Score=339.29 Aligned_cols=201 Identities=31% Similarity=0.456 Sum_probs=166.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC----CccEEEECCeecCCCCHHHh
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGVNLKEFQLKWI 335 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~----~~G~i~~~g~~~~~~~~~~~ 335 (478)
.++++|++++| + +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 3 3699999999999999999999999999999999999999 999999999988632 223
Q ss_pred hcceEEEecCCC-CCc--ccHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCccc---cccCCCCCCChHHH
Q 048556 336 RGKIGLVSQEPV-LFT--SSIKDNINYG----KDGASIAEIMAAAELANAAKFIDSLPQGLDT---MVGEHGTQLSGGQK 405 (478)
Q Consensus 336 r~~i~~v~Q~~~-lf~--~ti~eNl~~~----~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t---~~~~~g~~LSgGq~ 405 (478)
++.++|+||++. .|. .|+.+|+.+. .....++++.+.++ .+ |++. .++.....|||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~--~l~~~~~~~~~~~~~LS~Gq~ 146 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALE---------AV--GLENAARVLKLYPFEMSGGML 146 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHH---------Hc--CCCChhhhhhcCCcccCHHHH
Confidence 467999999985 343 4888887542 11112223333333 33 3333 46777899999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 147 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~ 221 (254)
T PRK10418 147 QRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221 (254)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999988743 6899999999999865 99999999999875
No 263
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=7.5e-43 Score=337.12 Aligned_cols=194 Identities=26% Similarity=0.414 Sum_probs=159.9
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEe-cCCCCCc-ccH
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVS-QEPVLFT-SSI 353 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~lf~-~ti 353 (478)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|++ |++.+|. .|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4799999999999999999999999999999999999999999999999987553 345678899997 5677765 599
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 048556 354 KDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431 (478)
Q Consensus 354 ~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD 431 (478)
+||+.+... ..+.++..+. +.+.++.+ |++.........|||||+||++||||++.+|+++||||||++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKR-----LDELSELL--DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 999976431 1223332221 12233333 45444455667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 432 AESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 432 ~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999998743 6899999999998766 99999999999875
No 264
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-42 Score=370.79 Aligned_cols=208 Identities=27% Similarity=0.459 Sum_probs=177.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC--CccEEEECCeecCCCCHHH-hh
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGVNLKEFQLKW-IR 336 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~-~r 336 (478)
-++++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 3899999999963 4799999999999999999999999999999999999996 8999999999998776544 46
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556 337 GKIGLVSQEPVLFTS-SIKDNINYGKDG-----ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI 410 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~-----~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l 410 (478)
+.++||||++.+|+. |++||+.++... .+.++.. ..+.++++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY-----LRAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 789999999998876 999999886421 1222211 1234455555 66666677788999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~ 223 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG 223 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee
Confidence 999999999999999999999999999999998874 46899999999998876 99999999999874
No 265
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-42 Score=327.39 Aligned_cols=195 Identities=22% Similarity=0.380 Sum_probs=163.5
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.. ....++++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999963 469999999999999999999999999999999999999999999999998865 3456788999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556 341 LVSQEPVLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419 (478)
Q Consensus 341 ~v~Q~~~lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ 419 (478)
|+||++.+++ .|++||+.++......+ .++.+.++.+ |+.........+|||||+||++||||++++|+
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~--------~~~~~~l~~~--~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGA--------VGITELCRLF--SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcch--------HHHHHHHHHc--CCchhhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 9999999875 59999998763111111 1233444444 33333445557899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEE
Q 048556 420 ILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAV 469 (478)
Q Consensus 420 ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~v 469 (478)
++||||||++||+.+.+.+.+.|+++. +++|+|++||+.+.+.+||.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999864 47899999999999999987543
No 266
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=1.8e-42 Score=336.79 Aligned_cols=211 Identities=25% Similarity=0.363 Sum_probs=164.4
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC--CCCccEEEECCeecCCCCHHHhh-c
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGVNLKEFQLKWIR-G 337 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~~~G~i~~~g~~~~~~~~~~~r-~ 337 (478)
++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+....+ +
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 689999999963 46999999999999999999999999999999999994 69999999999999887766554 5
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCC---CHHHHHHHHH-HhcHHHHHHh--CCCCccccccCCC-CCCChHHHHHHH
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGKDGA---SIAEIMAAAE-LANAAKFIDS--LPQGLDTMVGEHG-TQLSGGQKQRIA 409 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~~---~~~~~~~a~~-~~~~~~~i~~--lp~g~~t~~~~~g-~~LSgGq~Qrl~ 409 (478)
.++|++|++.+++. |..+++.+..... ...+..+..+ ...+.+.++. +|+++.+ ... ..||||||||++
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~~LS~G~~qrv~ 155 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLT---RSVNVGFSGGEKKRND 155 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcc---cCCCCCCCHHHHHHHH
Confidence 79999999987765 5555543221100 0000000000 1111223332 3333322 223 379999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh--cCEEEEEeCCEEee
Q 048556 410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN--ADLIAVIHQGKLVE 477 (478)
Q Consensus 410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~--~d~i~vl~~G~i~~ 477 (478)
||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. +|+|++|++|++++
T Consensus 156 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~ 226 (248)
T PRK09580 156 ILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 226 (248)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEE
Confidence 99999999999999999999999999999999988754 6899999999999887 79999999999875
No 267
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-42 Score=368.96 Aligned_cols=208 Identities=25% Similarity=0.432 Sum_probs=176.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 338 (478)
-++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 469999999999999999999999999999999999999999999999999876543 446788
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 339 IGLVSQEPVLFTS-SIKDNINYGKDG-----ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 339 i~~v~Q~~~lf~~-ti~eNl~~~~~~-----~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
++|+||++.+|+. |++||+.++... ....+.. ..+.++++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999999886 999999986421 1112211 1234555555 5655556677899999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 413 AILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999998875 46899999999998866 99999999999864
No 268
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.5e-43 Score=308.34 Aligned_cols=194 Identities=31% Similarity=0.534 Sum_probs=168.0
Q ss_pred CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHH
Q 048556 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIK 354 (478)
Q Consensus 275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 354 (478)
+.++|+|+||++++||.++|+||||||||||+|.++-+.+|++|.+++.|++++.++++.+|++|+|+-|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCc-cccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556 355 DNINYGKDGASIAEIMAAAELANAAKFIDSLPQGL-DTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433 (478)
Q Consensus 355 eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~-~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~ 433 (478)
||+.|.-.-.. .+-..+ ...+++..+ ++ ++.+..+..+||||||||+||+|-|.--|+||+||||||+||+.
T Consensus 95 DNlifP~~~r~-rr~dr~----aa~~llar~--~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~ 167 (223)
T COG4619 95 DNLIFPWQIRN-RRPDRA----AALDLLARF--ALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDES 167 (223)
T ss_pred hccccchHHhc-cCCChH----HHHHHHHHc--CCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChh
Confidence 99998631100 000011 112333333 22 56778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCCeEEEEecCchh-hhhcCEEEEEeCCEE
Q 048556 434 SERVVQEALDKIM--INRTTVIVAHRLST-VRNADLIAVIHQGKL 475 (478)
Q Consensus 434 ~~~~i~~~l~~~~--~~~t~i~itH~~~~-~~~~d~i~vl~~G~i 475 (478)
+.+.|.+.|.++- ++..+++|||+... ++++|+++.+..|++
T Consensus 168 nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 168 NKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999998874 46799999999987 788999999999876
No 269
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.6e-42 Score=326.04 Aligned_cols=195 Identities=20% Similarity=0.327 Sum_probs=164.8
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999963 46999999999999999999999999999999999999999999999999987654 45678899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDG---ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~---~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
|++|++.+++. |++||+.++.+. ...+++.++++..+ ++.........||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVG-----------LAGFEDVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcC-----------CHHHhhCChhhcCHHHHHHHHHHHHHhc
Confidence 99999988874 999999876432 12233444444444 4333445578899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEE
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVI 470 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl 470 (478)
+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998874 46899999999999866 5777776
No 270
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.2e-42 Score=367.60 Aligned_cols=207 Identities=27% Similarity=0.440 Sum_probs=175.8
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH-hhcce
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW-IRGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 339 (478)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 5 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 5 LQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred EEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 899999999963 47999999999999999999999999999999999999999999999999987665443 35789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDG------ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~------~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
+|+||++.+|.. |++||+.++... .+.++..+ .+.+.++.+ |+.........+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHH
Confidence 999999998876 999999986421 11222111 233455554 6665566777899999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 413 AILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~ 221 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA 221 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999998874 46899999999998866 99999999999864
No 271
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-42 Score=339.38 Aligned_cols=205 Identities=25% Similarity=0.429 Sum_probs=163.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|++++|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 4899999999963 2479999999999999999999999999999999999999999999999998742 1223469
Q ss_pred EEEecCCCC---CcccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556 340 GLVSQEPVL---FTSSIKDNINYGKDG------ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI 410 (478)
Q Consensus 340 ~~v~Q~~~l---f~~ti~eNl~~~~~~------~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l 410 (478)
+|+||++.+ +..++++|+.++... ...++..+ ...+.++.+ |+.........+|||||+||++|
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~l 153 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQ-----IVTAALARV--DMVEFRHRQIGELSGGQKKRVFL 153 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHH-----HHHHHHHHc--CChhHhcCCcccCCHHHHHHHHH
Confidence 999999865 445899998754210 00011000 112233333 44444455677899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+++++ +|++++
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~ 221 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA 221 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 999999999999999999999999999999998875 46899999999998755 9999776 899875
No 272
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=4.4e-42 Score=330.47 Aligned_cols=187 Identities=33% Similarity=0.475 Sum_probs=157.6
Q ss_pred cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHH
Q 048556 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNI 357 (478)
Q Consensus 279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl 357 (478)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+||++.+|+. |++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 578999999999999999999999999999999999999999999999876543 24899999999984 999999
Q ss_pred hcCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556 358 NYGK----DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433 (478)
Q Consensus 358 ~~~~----~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~ 433 (478)
.++. +..+.++..+ .+.++++.+ |++........+||||||||++|||||+.+|+++||||||++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRA-----IVEEHIALV--GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHhcccCCCHHHHHH-----HHHHHHHHc--CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 8752 2222222111 123445444 5665666778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 434 SERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 434 ~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 195 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAAN 195 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEec
Confidence 99999999988742 6899999999998765 99999999999875
No 273
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.4e-42 Score=365.77 Aligned_cols=206 Identities=27% Similarity=0.464 Sum_probs=176.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhh-cc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIR-GK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r-~~ 338 (478)
-++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999877765554 56
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 339 IGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
++|+||++.+|+. |++||+.++.... .+.. ..+.++++.+ |++........+||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASM-----QKMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccc--hHHH-----HHHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999998876 9999999865321 1111 1123444444 566566677889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~ 220 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIAL 220 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999998875 46899999999998865 99999999999874
No 274
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-42 Score=366.99 Aligned_cols=208 Identities=24% Similarity=0.417 Sum_probs=176.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH-hhcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW-IRGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 338 (478)
-++++|++++|++ +++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 3899999999963 46999999999999999999999999999999999999999999999999998777554 3467
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCC---------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556 339 IGLVSQEPVLFTS-SIKDNINYGKDGA---------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~---------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
++||||++.+|.. |++||+.++.... +.++.. ..+.+.++.+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 9999999998876 9999998753210 111111 1234455555 666556677889999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~ 225 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVC 225 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999998875 46899999999999876 99999999999864
No 275
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.5e-43 Score=316.89 Aligned_cols=212 Identities=24% Similarity=0.433 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 338 (478)
.+..+|+.++|.. +++++++||++++||+|++.||||+||||.+.++.|+.+|++|+|.+||.|++.++.... |--
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 4788999999963 589999999999999999999999999999999999999999999999999999997664 444
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 339 IGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|+|+||++.+|.+ |++|||...-.- .......+.++..+.+.++.+ .+.+.-...+..||||||+|+.|||||..+
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~-~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~~ 157 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEI-REKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAAN 157 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhh-hhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhcC
Confidence 9999999999988 999999875432 221222233444455556655 577777888999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCch-hhhhcCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLS-TVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~~~d~i~vl~~G~i~~ 477 (478)
|+.++|||||+++||.+...|.+.++.++ .+--|++..|+.. ++.-|||.+++.+|++..
T Consensus 158 P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla 219 (243)
T COG1137 158 PKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLA 219 (243)
T ss_pred CCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEe
Confidence 99999999999999999999999999886 4678899999976 577799999999999864
No 276
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=5.5e-42 Score=333.49 Aligned_cols=201 Identities=24% Similarity=0.400 Sum_probs=169.1
Q ss_pred EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEE
Q 048556 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL 341 (478)
Q Consensus 262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 341 (478)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|++++ +|+|.++|.++.+.+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 46777773 279999999999999999999999999999999999964 8999999999988888888888999
Q ss_pred EecCCCCC-cccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC---
Q 048556 342 VSQEPVLF-TSSIKDNINYGKDGA-SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK--- 416 (478)
Q Consensus 342 v~Q~~~lf-~~ti~eNl~~~~~~~-~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~--- 416 (478)
+||++.++ ..|+++|+.++.+.. ..++. ...+.+.++.+ |++.........||||||||++|||||+.
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 99998655 569999999874321 11111 11234455555 66666677789999999999999999997
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 ----DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ----~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~ 213 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLA 213 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 679999999999999999999999998875 46899999999997655 99999999999875
No 277
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.3e-42 Score=357.08 Aligned_cols=215 Identities=32% Similarity=0.496 Sum_probs=172.3
Q ss_pred cEEEEeEEEECCCC--------CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee--cCC
Q 048556 260 DIELKDIYFSYPSR--------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN--LKE 329 (478)
Q Consensus 260 ~i~~~~v~~~y~~~--------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~--~~~ 329 (478)
-++++|+++.|..+ ....+++|+||++++||++||||+||||||||.|+|+|+.+|++|+|.++|.+ ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999741 12468999999999999999999999999999999999999999999999987 232
Q ss_pred CCHHHhhcceEEEecCCCC--Cc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHH
Q 048556 330 FQLKWIRGKIGLVSQEPVL--FT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQK 405 (478)
Q Consensus 330 ~~~~~~r~~i~~v~Q~~~l--f~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~ 405 (478)
-+....|+++-+|+|+|+- -+ .||+++|.-.-..+.... .+...+.+.+.++.. |+.. .+...+.+||||||
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~--~~~~~~rv~~ll~~V--gL~~~~l~ryP~elSGGQr 435 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGS--GAERRARVAELLELV--GLPPEFLDRYPHELSGGQR 435 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccc--hHHHHHHHHHHHHHc--CCCHHHHhcCchhcCcchh
Confidence 2344567899999999974 33 499999974321111000 111111222222222 3333 56778899999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~ 478 (478)
||+||||||..+|+++|+|||||+||+.+...+.+.|+++.+ +.|.++|||++..+++ ||||+||++|+|||.
T Consensus 436 QRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~ 511 (539)
T COG1123 436 QRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE 511 (539)
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe
Confidence 999999999999999999999999999999999999998864 6899999999999998 999999999999984
No 278
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-42 Score=365.08 Aligned_cols=205 Identities=23% Similarity=0.384 Sum_probs=174.3
Q ss_pred EEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcceEE
Q 048556 263 LKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGKIGL 341 (478)
Q Consensus 263 ~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~ 341 (478)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. +.+++.++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 479999999999999999999999999999999999999999999999999876654 345778999
Q ss_pred EecCCCCCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 342 VSQEPVLFTS-SIKDNINYGKDG-----ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 342 v~Q~~~lf~~-ti~eNl~~~~~~-----~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+||++.+|.. |++||+.++... .+.++.. ..+.++++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 9999988765 999999876421 1122211 1234555655 6666667778999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~ 214 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIA 214 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999998875 46899999999998865 99999999999875
No 279
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-41 Score=324.12 Aligned_cols=196 Identities=21% Similarity=0.301 Sum_probs=164.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4899999999963 4699999999999999999999999999999999999999999999999988653 345679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC--CCCH-HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKD--GASI-AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~-~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+|++|++.+|++ |++||+.++.. .... +... +++..+ |+..........||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPG---------SALAIV--GLAGYEDTLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHH---------HHHHHc--CChhhccCChhhCCHHHHHHHHHHHHHh
Confidence 999999999987 99999976532 1111 1222 223332 4444445667899999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeC
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQ 472 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~ 472 (478)
++|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998764 46899999999998866 899999874
No 280
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-42 Score=320.74 Aligned_cols=210 Identities=28% Similarity=0.489 Sum_probs=181.8
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcce
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 339 (478)
+++++++++|.+ -.+++|+||++++||+++|+|||||||||++|+|.|+|+|++|+|.++|.|++.+++..+ |.-+
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 678999999964 479999999999999999999999999999999999999999999999999999998775 4459
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDGA-----------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR 407 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~-----------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qr 407 (478)
+--+|.+.+|++ |+.||+..+.... ...+..++.+ .+.++++.+ |++..-++...+||+||++|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e--~A~~~Le~v--gL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE--RARELLEFV--GLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHH--HHHHHHHHc--CCchhhcchhhcCChhHhHH
Confidence 999999999987 9999999874211 0011112222 224455555 88888889999999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+.|||||+.+|++|+||||.++|.+.....+.+.|+++.+ +.|+++|-|||..+.. ||||+||+.|+++.
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 9999999999999999999999999999999999999875 4899999999999877 99999999999764
No 281
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=8.5e-42 Score=321.03 Aligned_cols=192 Identities=22% Similarity=0.315 Sum_probs=159.7
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 478999999963 47999999999999999999999999999999999999999999999999987765 45678899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFT-SSIKDNINYGKDGAS--IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~-~ti~eNl~~~~~~~~--~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|++|++.+|+ .|++||+.++.+... .+++.++++..++.+ .......+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG-----------FEDLPAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHH-----------HhcCChhhcCHHHHHHHHHHHHHhcC
Confidence 9999999887 599999987532211 223444444444443 33445678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEE
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIA 468 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~ 468 (478)
|++++|||||++||+.+++.+.+.|+++. +++|+|++||+...+. |++.+
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~ 196 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EAREL 196 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEe
Confidence 99999999999999999999999998864 5689999999985443 35554
No 282
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-41 Score=321.67 Aligned_cols=194 Identities=24% Similarity=0.373 Sum_probs=163.2
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .. .++.++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 789999999963 469999999999999999999999999999999999999999999999998653 22 788899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFT-SSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~-~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|++|++.++. .|++||+.+... ...++++.++++..++.+ .......+|||||+||++||||++++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~al~~~ 145 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-----------LAHLPFGYLSAGQKRRVALARLLVSN 145 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-----------HHcCChhhcCHHHHHHHHHHHHHhcC
Confidence 9999887764 699999987432 122334444554444433 33344568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeC
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQ 472 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~ 472 (478)
|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. |+++.++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 146 RPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999998764 57899999999999988 99988754
No 283
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=2.1e-41 Score=329.66 Aligned_cols=191 Identities=26% Similarity=0.472 Sum_probs=163.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 3899999999963 4699999999999999999999999999999999999999999999986 3469
Q ss_pred EEEecCCCCCc---ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFT---SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~---~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+|+||++.++. .|+++|+.+.. ...++++.++++..++.+++ ......|||||+||++||||++.
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLRP-GTKKEDILPALKRVQAGHLI-----------DAPMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred EEeccccccccccChhHHHHHhccc-cccHHHHHHHHHHcCChHHH-----------hCChhhCCHHHHHHHHHHHHHhc
Confidence 99999998765 38999987642 33455566666665554433 34567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|+++||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++ ++++
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~ 200 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICC 200 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEe
Confidence 9999999999999999999999999988753 6899999999999865 999999965 6654
No 284
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.1e-41 Score=361.45 Aligned_cols=207 Identities=28% Similarity=0.467 Sum_probs=173.4
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC--CccEEEECCeecCCCCHHH-hhc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGVNLKEFQLKW-IRG 337 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~-~r~ 337 (478)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .++
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999963 4699999999999999999999999999999999999987 7999999999998776544 456
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccccc-cCCCCCCChHHHHHHH
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGKDG------ASIAEIMAAAELANAAKFIDSLPQGLDTMV-GEHGTQLSGGQKQRIA 409 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~------~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~-~~~g~~LSgGq~Qrl~ 409 (478)
.++||||++.+|+. |++||+.++... ...++.. ..+.+.++.+ |++... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 79999999988876 999999886421 1112211 1234455555 454332 3446789999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~ 221 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA 221 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEee
Confidence 9999999999999999999999999999999998875 46899999999999876 99999999999864
No 285
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.5e-41 Score=325.44 Aligned_cols=203 Identities=28% Similarity=0.380 Sum_probs=162.8
Q ss_pred EEEEeEEEECCCC---C-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEEC--Ce--ecCCCCH
Q 048556 261 IELKDIYFSYPSR---P-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID--GV--NLKEFQL 332 (478)
Q Consensus 261 i~~~~v~~~y~~~---~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~--g~--~~~~~~~ 332 (478)
++++|++++|++. + ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6899999999631 1 1469999999999999999999999999999999999999999999998 42 6655554
Q ss_pred HH---h-hcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcccc-ccCCCCCCChHH
Q 048556 333 KW---I-RGKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTM-VGEHGTQLSGGQ 404 (478)
Q Consensus 333 ~~---~-r~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGq 404 (478)
.. + ++.++|+||++.+|+. |++||+.+... ....++..+ .+.++++.+ |++.. ....+.+|||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA-----RARELLARL--NIPERLWHLPPATFSGGE 154 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhhCCcccCCHHH
Confidence 43 2 4579999999998876 99999976321 112112111 123344444 44332 245678999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEE
Q 048556 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLIAVI 470 (478)
Q Consensus 405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl 470 (478)
|||++|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||+++.+
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999875 4689999999999886 49999876
No 286
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-41 Score=370.31 Aligned_cols=211 Identities=28% Similarity=0.429 Sum_probs=174.9
Q ss_pred cEEEEeEEEECCCCC--------CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC
Q 048556 260 DIELKDIYFSYPSRP--------GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ 331 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~--------~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~ 331 (478)
-++++|+++.|+.+. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996211 136999999999999999999999999999999999999999999999999998765
Q ss_pred HH---HhhcceEEEecCC--CCCcc-cHHHHHhcCCC--CC-CHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCC
Q 048556 332 LK---WIRGKIGLVSQEP--VLFTS-SIKDNINYGKD--GA-SIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLS 401 (478)
Q Consensus 332 ~~---~~r~~i~~v~Q~~--~lf~~-ti~eNl~~~~~--~~-~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LS 401 (478)
.. .+|+.|+||||++ .+++. |+.||+.++.. .. ..++.. ..+.++++.+ |++ ........+||
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~L~~~--gL~~~~~~~~~~~LS 465 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAA-----ARVAWLLERV--GLLPEHAWRYPHEFS 465 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHH-----HHHHHHHHHc--CCCHHHhhCCcccCC
Confidence 43 3577899999998 47765 99999976421 11 111111 1223455554 664 34567788999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~ 544 (623)
T PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE 544 (623)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999988753 6899999999999876 99999999999986
No 287
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.4e-41 Score=326.98 Aligned_cols=191 Identities=30% Similarity=0.437 Sum_probs=155.8
Q ss_pred ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC----CccEEEECCeecCCCCHHHhhcceEEEecCCC-CC-c-
Q 048556 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV-LF-T- 350 (478)
Q Consensus 278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~----~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf-~- 350 (478)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +..++.++|++|++. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999998654 223468999999985 34 4
Q ss_pred ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc---ccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeC
Q 048556 351 SSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLD---TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 425 (478)
Q Consensus 351 ~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~---t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDE 425 (478)
.|+.+|+.+.... ...++. ...+.+.++.+ |++ +.....+.+||||||||++||||++++|+++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQA-----RALILEALEAV--GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHH-----HHHHHHHHHHc--CCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4899998653211 111111 11123344443 443 45677788999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 426 ATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 426 pts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 206 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE 206 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999998753 6899999999999865 99999999999875
No 288
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-41 Score=347.41 Aligned_cols=208 Identities=31% Similarity=0.475 Sum_probs=178.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 338 (478)
-++++|++++|++ .++|+|+||++++||++|++|.||||||||+|+|+|.|+|++|+|.+||+++.-.++.+- ..-
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999974 579999999999999999999999999999999999999999999999999987776554 455
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 339 IGLVSQEPVLFTS-SIKDNINYGKDGAS------IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~~------~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
|+.|.|+..|++. ||.|||-+|+.... ..++.+.+ .+.+..+ |++........+||.||||.++||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A-----~~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRA-----RELLARL--GLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHH-----HHHHHHc--CCCCChhhhhhhCCHHHHHHHHHH
Confidence 9999999999987 99999999975432 23333222 2344444 332225556678999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||+..+++++|||||||+|+....+.+++.+++++ ++.++|+||||++.+.. ||||.||.||+.+.
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 99999999999999999999999999999999987 57999999999998876 99999999999874
No 289
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-41 Score=325.68 Aligned_cols=207 Identities=33% Similarity=0.560 Sum_probs=174.4
Q ss_pred cEEEEeEEEECCCCCC---------------------CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc
Q 048556 260 DIELKDIYFSYPSRPG---------------------EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~---------------------~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 318 (478)
.|+++||++-|..++. .--++|+||+|+.||+..|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4778888877753210 1248899999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHh----hcceEEEecCCCCCcc-cHHHHHhcCCCCC--C----HHHHHHHHHHhcHHHHHHhCCC
Q 048556 319 EVLIDGVNLKEFQLKWI----RGKIGLVSQEPVLFTS-SIKDNINYGKDGA--S----IAEIMAAAELANAAKFIDSLPQ 387 (478)
Q Consensus 319 ~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~--~----~~~~~~a~~~~~~~~~i~~lp~ 387 (478)
+|+++|.|+..++.+++ |+++++|+|..-||+- |+.||..||-.-. . .+...++++.+|+.+|-
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~----- 158 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA----- 158 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh-----
Confidence 99999999999998776 4669999999999987 9999999986322 2 22334445555555444
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhh-hhc
Q 048556 388 GLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTV-RNA 464 (478)
Q Consensus 388 g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-~~~ 464 (478)
...+.+|||||+||+.|||||..+|+||++|||||+|||--+.+..+-|.++. -+||+++|||++++. +-.
T Consensus 159 ------~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 159 ------DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ------hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 44568899999999999999999999999999999999999999999887764 379999999999975 559
Q ss_pred CEEEEEeCCEEee
Q 048556 465 DLIAVIHQGKLVE 477 (478)
Q Consensus 465 d~i~vl~~G~i~~ 477 (478)
|||..|++|+|++
T Consensus 233 ~rIaimkdG~ivQ 245 (386)
T COG4175 233 DRIAIMKDGEIVQ 245 (386)
T ss_pred ceEEEecCCeEEE
Confidence 9999999999986
No 290
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.6e-41 Score=315.69 Aligned_cols=178 Identities=33% Similarity=0.526 Sum_probs=146.4
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC--CCHHHhhcceEEEecCC--CCCcc
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE--FQLKWIRGKIGLVSQEP--VLFTS 351 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~--~lf~~ 351 (478)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.++|+||++ .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999999852 23345678899999998 47778
Q ss_pred cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 048556 352 SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429 (478)
Q Consensus 352 ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~ 429 (478)
|++||+.++.. ..+.++..+. +.+.++.+ |++........+|||||+||++|||||+++|+++||||||++
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 157 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERR-----VREALTAV--GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAG 157 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 99999987531 1222222111 12333333 454455566789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc-CCCeEEEEecCchh
Q 048556 430 LDAESERVVQEALDKIM-INRTTVIVAHRLST 460 (478)
Q Consensus 430 LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~ 460 (478)
||+.+++.+.+.|+++. +++|+|++||+++.
T Consensus 158 LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 158 LDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999998875 46899999999864
No 291
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.1e-41 Score=356.97 Aligned_cols=201 Identities=19% Similarity=0.296 Sum_probs=170.6
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 789999999963 36999999999999999999999999999999999999999999999998887767666778899
Q ss_pred EEecCCCC--C-------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 341 LVSQEPVL--F-------TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 341 ~v~Q~~~l--f-------~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
|++|++.+ + ..|+++|+.++. ...+++. +.++.+ |++........+||||||||++||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCE---------QLAQQF--GITALLDRRFKYLSTGETRKTLLC 147 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch--hHHHHHH---------HHHHHc--CCHhhhhCCcccCCHHHHHHHHHH
Confidence 99998753 2 348888886531 1112233 334443 555555667789999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++.
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999998875 36899999999998876 99999999999864
No 292
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-41 Score=358.09 Aligned_cols=216 Identities=24% Similarity=0.381 Sum_probs=174.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-CCccEEEECCeecCCCCH-HHhhc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLIDGVNLKEFQL-KWIRG 337 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~-~~~r~ 337 (478)
-++++|+++.|+...+.++++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.++...+. +..++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953112469999999999999999999999999999999999998 599999999999865543 34567
Q ss_pred ceEEEecCC---CCCcc-cHHHHHhcCCCC-CCH-HHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHH
Q 048556 338 KIGLVSQEP---VLFTS-SIKDNINYGKDG-ASI-AEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAI 410 (478)
Q Consensus 338 ~i~~v~Q~~---~lf~~-ti~eNl~~~~~~-~~~-~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~l 410 (478)
.++|+||++ .+|+. |+.||+.++... ... ...........+.++++.+ |++ ........+||||||||++|
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRL--KVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhc--CccCCCcccccccCCHHHHHHHHH
Confidence 899999996 46654 999999875310 000 0000011112345566666 564 34567788999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||++.+|++|||||||++||+.+.+.+++.|+++. +++|+|++||+++.+.. ||++++|++|+++.
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~ 485 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKG 485 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999998875 47899999999998866 99999999999863
No 293
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=7.4e-41 Score=320.67 Aligned_cols=195 Identities=25% Similarity=0.333 Sum_probs=156.1
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
+.++|+++.|.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 89 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---------- 89 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh----------
Confidence 677888888863 4799999999999999999999999999999999999999999999999876321
Q ss_pred EEecCCCCC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLF-TSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf-~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
.+...++ ..|++||+.++... .+.++..+. +.+.++.+ |++........+||||||||++||||++++
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 160 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK-----IDEIIEFS--ELGDFIDLPVKTYSSGMKARLAFAIATALE 160 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 1112222 46999999875321 122222111 12223222 444445556678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+++||||||++||+.+++.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999998875 45899999999998765 99999999999875
No 294
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4.5e-41 Score=361.05 Aligned_cols=210 Identities=30% Similarity=0.493 Sum_probs=173.3
Q ss_pred cEEEEeEEEECCCC--------CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC
Q 048556 260 DIELKDIYFSYPSR--------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ 331 (478)
Q Consensus 260 ~i~~~~v~~~y~~~--------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~ 331 (478)
-++++|+++.|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 48999999999521 12469999999999999999999999999999999999994 8999999999987765
Q ss_pred HHH---hhcceEEEecCC--CCCcc-cHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCC
Q 048556 332 LKW---IRGKIGLVSQEP--VLFTS-SIKDNINYGKD----GASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQL 400 (478)
Q Consensus 332 ~~~---~r~~i~~v~Q~~--~lf~~-ti~eNl~~~~~----~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~L 400 (478)
... +|+.++|+||++ .+|+. |++||+.++.. .....+. ...+.++++.+ |+. ........+|
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~L 426 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQR-----EQQVIAVMEEV--GLDPETRHRYPAEF 426 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHH-----HHHHHHHHHHc--CCCHHHHhcCCccC
Confidence 433 467899999998 37765 99999987521 0111111 11234455555 564 3456778899
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||||||++|||||+.+|+++||||||++||+.+.+.+++.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998753 6899999999998876 99999999999975
No 295
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=8.5e-41 Score=358.88 Aligned_cols=211 Identities=30% Similarity=0.483 Sum_probs=170.7
Q ss_pred cEEEEeEEEECCCC-CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCCCHH
Q 048556 260 DIELKDIYFSYPSR-PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEFQLK 333 (478)
Q Consensus 260 ~i~~~~v~~~y~~~-~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~~~~ 333 (478)
-++++|++++|++. ..+++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 38999999999631 124799999999999999999999999999999999999986 799999999999877644
Q ss_pred H---hh-cceEEEecCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccc---cccCCCCCC
Q 048556 334 W---IR-GKIGLVSQEPV--LFT-SSIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLDT---MVGEHGTQL 400 (478)
Q Consensus 334 ~---~r-~~i~~v~Q~~~--lf~-~ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t---~~~~~g~~L 400 (478)
+ +| +.++|+||++. +++ .|+++|+.++. ...+.++.. ..+.+.++.+ |++. .......+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR-----GEILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChHHHHhhCCccc
Confidence 3 33 57999999985 454 48999986421 111222211 1123344444 4432 345678899
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998875 36899999999998875 99999999999874
No 296
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-41 Score=324.46 Aligned_cols=210 Identities=30% Similarity=0.504 Sum_probs=167.6
Q ss_pred EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-C----CccEEEECCeecCCCCHHH
Q 048556 261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-P----QAGEVLIDGVNLKEFQLKW 334 (478)
Q Consensus 261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~----~~G~i~~~g~~~~~~~~~~ 334 (478)
++++|++..|.... ...+++|+||++++||++||||+|||||||+.+.|+|+.+ | .+|+|.++|.|+..++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999986432 2469999999999999999999999999999999999997 3 5799999999999999875
Q ss_pred h----hcceEEEecCCCC-Cc-c-cHHHHH----hcCCCCCCH----HHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 048556 335 I----RGKIGLVSQEPVL-FT-S-SIKDNI----NYGKDGASI----AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ 399 (478)
Q Consensus 335 ~----r~~i~~v~Q~~~l-f~-~-ti~eNl----~~~~~~~~~----~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~ 399 (478)
+ .+.|++|||+|.- |+ - ||.+-+ .......+. ++..+.++.+++.+ -+..+...+.+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~--------~~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPD--------PERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCC--------HHHHHhhCCcc
Confidence 3 3469999999852 32 1 454444 321111011 12333333333321 12355677899
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556 400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
||||||||+.||.|++.+|+++|.||||+|||..++++|++.|+++.+ +.++|+|||++..+.. ||||+||..|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999998864 7899999999998776 9999999999999
Q ss_pred eC
Q 048556 477 EK 478 (478)
Q Consensus 477 ~~ 478 (478)
|.
T Consensus 234 E~ 235 (316)
T COG0444 234 EE 235 (316)
T ss_pred Ee
Confidence 84
No 297
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=9.9e-41 Score=356.20 Aligned_cols=216 Identities=24% Similarity=0.346 Sum_probs=173.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-CccEEEECCeecCCCCH-HHhhc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGVNLKEFQL-KWIRG 337 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~-~~~r~ 337 (478)
-++++|+++.|++..+.++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999999421124699999999999999999999999999999999999995 89999999999865443 45678
Q ss_pred ceEEEecCC---CCCcc-cHHHHHhcCCCC-CCH-HHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHH
Q 048556 338 KIGLVSQEP---VLFTS-SIKDNINYGKDG-ASI-AEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIAI 410 (478)
Q Consensus 338 ~i~~v~Q~~---~lf~~-ti~eNl~~~~~~-~~~-~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~l 410 (478)
.++|+||++ .+|+. |+++|+.++... ... ..+........+.++++.+ |+.. ........||||||||++|
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~l 414 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL--KVKTASPFLPIGRLSGGNQQKAVL 414 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc--CccCCCccCccccCCHHHHHHHHH
Confidence 899999996 47765 999999875311 000 0000011112234556655 5542 3566778999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||++.+|++|||||||++||+.+.+.+++.|+++. ++.|+|++||+++.+.. ||++++|++|+++.
T Consensus 415 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 415 AKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999998875 46899999999998876 99999999999864
No 298
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-41 Score=364.87 Aligned_cols=211 Identities=28% Similarity=0.442 Sum_probs=171.5
Q ss_pred cEEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC----------
Q 048556 260 DIELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK---------- 328 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~---------- 328 (478)
-|+++|++++|++.. ..++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 589999999996321 247999999999999999999999999999999999999999999999997542
Q ss_pred CCCHH---Hhh-cceEEEecCC--CCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCcc---ccccC
Q 048556 329 EFQLK---WIR-GKIGLVSQEP--VLFTS-SIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLD---TMVGE 395 (478)
Q Consensus 329 ~~~~~---~~r-~~i~~v~Q~~--~lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~---t~~~~ 395 (478)
..+.. .+| +.|+||+|+| .+++. |++||+.++.. ..+..+.. ..+.+.++.+ |+. .....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~ 164 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM-----VEAKRMLDQV--RIPEAQTILSR 164 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChhhHHhC
Confidence 22322 233 5799999998 57765 99999987521 11222211 1123444444 552 34567
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhh-cCEEEEEeC
Q 048556 396 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-I-NRTTVIVAHRLSTVRN-ADLIAVIHQ 472 (478)
Q Consensus 396 ~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~vl~~ 472 (478)
...+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. + ++|+|+|||+++.+.. ||||++|++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence 788999999999999999999999999999999999999999999999875 3 6899999999998866 999999999
Q ss_pred CEEee
Q 048556 473 GKLVE 477 (478)
Q Consensus 473 G~i~~ 477 (478)
|++++
T Consensus 245 G~i~~ 249 (623)
T PRK10261 245 GEAVE 249 (623)
T ss_pred Ceecc
Confidence 99975
No 299
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.6e-40 Score=335.88 Aligned_cols=213 Identities=29% Similarity=0.471 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 338 (478)
.++++|+++.|++ ..+++|+||++++||+.|+.|+||+|||||+++|.|+|+|++|+|.+||+++.--++ +..|.-
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 4899999999973 579999999999999999999999999999999999999999999999999987665 456777
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 339 IGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 339 i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
||+|.|++.|++. |+.|||.+|.+....-.+........+++..+++ |++-...+....||-||+||+.|-+||+++
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY--GLPVDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh--CCCCCccceeecCCcchhHHHHHHHHHhcC
Confidence 9999999999987 9999999998643111111112222334445554 777777788899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|++||||||||-|-|...+++++.++++. +++|||+|||++.+++. |||+-||.+|+++.
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 99999999999999999999999999986 58999999999999888 99999999999864
No 300
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-40 Score=354.55 Aligned_cols=211 Identities=19% Similarity=0.344 Sum_probs=172.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 338 (478)
-++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+++.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999998762 38999999999999999999999999999999999999999999999999866543 456778
Q ss_pred eEEEecCC---CCCcc-cHHHHHhcCCCCC--CHH---HH-HHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHH
Q 048556 339 IGLVSQEP---VLFTS-SIKDNINYGKDGA--SIA---EI-MAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQR 407 (478)
Q Consensus 339 i~~v~Q~~---~lf~~-ti~eNl~~~~~~~--~~~---~~-~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qr 407 (478)
++|+||++ .+|+. |++||+.++.... ... .. ........+.++++.+ |+. ........+||||||||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qr 417 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL--ALKCHSVNQNITELSGGNQQK 417 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhc--CCCCCCccCccccCChHHHHH
Confidence 99999984 57775 9999998763210 000 00 0001112234556665 664 45667788999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++
T Consensus 418 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 418 VLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998874 47899999999998765 99999999999864
No 301
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-40 Score=301.27 Aligned_cols=203 Identities=27% Similarity=0.464 Sum_probs=175.2
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+.+|+|++-.+ +.+|+++||++++||.+||+||||||||||+|.|+|...|++|++.+||.++.+++..++-++-+
T Consensus 2 i~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 688999998864 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC-CcccHHHHHhcCC-CCC---C--HHH--HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 341 LVSQEPVL-FTSSIKDNINYGK-DGA---S--IAE--IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 341 ~v~Q~~~l-f~~ti~eNl~~~~-~~~---~--~~~--~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
+.||+..+ |+-|++|-+.+|. |.- . +++ ..+++..+++..+ -+..-..|||||+||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~l-----------a~R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGL-----------AGRDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhh-----------hccchhhcCchHHHHHHHH
Confidence 99999987 8999999999996 321 1 222 3444555544332 2344578999999999999
Q ss_pred HHHcCC------CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556 412 RAILKD------PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLIAVIHQGKLVE 477 (478)
Q Consensus 412 Rall~~------~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~ 477 (478)
|.|..- +++|+||||||+||...+..+++..+++. ++..|+.|=|+++... +||||++|.+||++.
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a 221 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIA 221 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEee
Confidence 999763 35899999999999999999999999986 5789999999999765 599999999999975
No 302
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=362.44 Aligned_cols=211 Identities=33% Similarity=0.504 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh---
Q 048556 260 DIELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI--- 335 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~--- 335 (478)
-++++|+++.|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 389999999996421 2469999999999999999999999999999999999999999999999999998887654
Q ss_pred -hcceEEEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 336 -RGKIGLVSQEPVLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 336 -r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
++.++|++|++.+|++ |+.||+.++.... ..++ ....+.++++.+ |++..+...+.+|||||+||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-----RLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 5789999999999975 9999998743111 1111 122345566666 777778888899999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
|||+++|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.++.||++++|++|++++
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~ 223 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVR 223 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999998875 4789999999999998899999999999986
No 303
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-40 Score=298.88 Aligned_cols=206 Identities=30% Similarity=0.508 Sum_probs=170.4
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
+.+++++.+|++.+ .++|+|+|++|++||.++++||||||||||+|+++|+.+|..|+|.+||.+++.-. ..-|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-----aerg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----AERG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC-----ccce
Confidence 56788999998653 56999999999999999999999999999999999999999999999999987654 2348
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556 341 LVSQEPVLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419 (478)
Q Consensus 341 ~v~Q~~~lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ 419 (478)
+|+|++-|++ -|+.||+.||-.-...++ +.+....++.+... |+...-.....+||||||||+.|||||.-+|+
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k---~~R~~~a~q~l~~V--gL~~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEK---AQRREIAHQMLALV--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHh--CcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence 9999999998 499999999864332222 22222223333322 55444456678999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeC--CEEee
Q 048556 420 ILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ--GKLVE 477 (478)
Q Consensus 420 ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~--G~i~~ 477 (478)
.|+||||+++||.-|++++.+.|..++ .++.+++|||+.++.-. +++++||.- |+|++
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~ 215 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVE 215 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeE
Confidence 999999999999999999999998775 37899999999998665 999999965 78876
No 304
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.6e-40 Score=311.68 Aligned_cols=189 Identities=20% Similarity=0.368 Sum_probs=157.3
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|++ +.++ ++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 689999999953 3455 599999999999999999999999999999999999999999999886543 35699
Q ss_pred EEecCCCC-CcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 341 LVSQEPVL-FTSSIKDNINYGKDGA-SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 341 ~v~Q~~~l-f~~ti~eNl~~~~~~~-~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
|++|++.+ +..|++||+.++.+.. ..+++.++++..+ ++......+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFK-----------LHDLLDEKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcC-----------CHhhhccChhhCCHHHHHHHHHHHHHhcCC
Confidence 99998765 5679999998764322 2233444444433 444455667899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEecCchhhhhcCEEE
Q 048556 419 RILLLDEATSALDAESERVVQEALDKI-MINRTTVIVAHRLSTVRNADLIA 468 (478)
Q Consensus 419 ~ililDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~i~ 468 (478)
+++||||||++||+.+++.+.+.|+.. .+++|+|++||+++.++.+|.+.
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999999754 35789999999999999998763
No 305
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.9e-40 Score=355.64 Aligned_cols=211 Identities=27% Similarity=0.435 Sum_probs=171.2
Q ss_pred cEEEEeEEEECCC--CCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEEC-Cee---cCCCC--
Q 048556 260 DIELKDIYFSYPS--RPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID-GVN---LKEFQ-- 331 (478)
Q Consensus 260 ~i~~~~v~~~y~~--~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~-g~~---~~~~~-- 331 (478)
-++++|++++|++ ...+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999953 112469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHhhcceEEEecCCCCCcc-cHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccc-----cccCCCCCCChH
Q 048556 332 -LKWIRGKIGLVSQEPVLFTS-SIKDNINYGKD-GASIAEIMAAAELANAAKFIDSLPQGLDT-----MVGEHGTQLSGG 403 (478)
Q Consensus 332 -~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~-~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-----~~~~~g~~LSgG 403 (478)
...+++.++|+||++.+|+. |++||+.++.. ....++. ...+.++++.+ |++. .......+||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELA-----RMKAVITLKMV--GFDEEKAEEILDKYPDELSEG 431 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHH-----HHHHHHHHHhC--CCCCccchhhhhCChhhCCHH
Confidence 23456789999999988875 99999986321 1111111 11233455554 5542 456778899999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||++++|++|++++
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 508 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK 508 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999988753 6899999999998876 99999999999875
No 306
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.3e-40 Score=343.33 Aligned_cols=210 Identities=28% Similarity=0.480 Sum_probs=170.2
Q ss_pred cEEEEeEEEECCCCCC-CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC----ccEEEECCeecCCCCHHH
Q 048556 260 DIELKDIYFSYPSRPG-EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ----AGEVLIDGVNLKEFQLKW 334 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~-~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~----~G~i~~~g~~~~~~~~~~ 334 (478)
-++++|++..|....+ .++++|+||++.+||++||||+|||||||+++.|+|+.++. +|+|.++|.|+..++.++
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999975422 25999999999999999999999999999999999999987 799999999998888765
Q ss_pred hh----cceEEEecCCC-CCcc--cHHHHHh----cCCCCCCHH---HHHHHHHHhcHHHHHHhCCCCccccccCCCCCC
Q 048556 335 IR----GKIGLVSQEPV-LFTS--SIKDNIN----YGKDGASIA---EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQL 400 (478)
Q Consensus 335 ~r----~~i~~v~Q~~~-lf~~--ti~eNl~----~~~~~~~~~---~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~L 400 (478)
+| +.|+||||+|. .++- ||.+-|. ...+...++ +..+.++.+ .+|+.-.. ...+.+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~V-------gl~~~~~~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQV-------GLPDPERR--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHc-------CCCChhhh--ccCCccc
Confidence 53 56999999985 4443 6665554 222111111 222222222 23332222 4588999
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||||||+.||+||+.+|++||+||||.+||+.++++|++.|+++. .+.++|+|||++..+.. ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999986 47899999999999877 99999999999998
Q ss_pred C
Q 048556 478 K 478 (478)
Q Consensus 478 ~ 478 (478)
.
T Consensus 236 ~ 236 (539)
T COG1123 236 T 236 (539)
T ss_pred e
Confidence 4
No 307
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2e-40 Score=355.41 Aligned_cols=207 Identities=26% Similarity=0.502 Sum_probs=168.5
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC--CCCccEEEEC---------------
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLID--------------- 323 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~~~G~i~~~--------------- 323 (478)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999953 47999999999999999999999999999999999996 7999999997
Q ss_pred --------CeecC-------CCC---HHHhhcceEEEecC-CCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHH
Q 048556 324 --------GVNLK-------EFQ---LKWIRGKIGLVSQE-PVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKF 381 (478)
Q Consensus 324 --------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~ 381 (478)
|.++. ..+ ...+|+.++|+||+ +.+|+. |++||+.++.. ....++.. ..+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAV-----GRAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHH
Confidence 32221 111 13457789999998 577775 99999987421 11222211 123345
Q ss_pred HHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCch
Q 048556 382 IDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLS 459 (478)
Q Consensus 382 i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~ 459 (478)
++.+ |++........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 5555 66666667789999999999999999999999999999999999999999999998874 3689999999999
Q ss_pred hhhh-cCEEEEEeCCEEee
Q 048556 460 TVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 460 ~~~~-~d~i~vl~~G~i~~ 477 (478)
.+.. ||+|++|++|++++
T Consensus 231 ~~~~~~d~i~~l~~G~i~~ 249 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKE 249 (520)
T ss_pred HHHHhcCEEEEEeCCEEee
Confidence 9876 99999999999864
No 308
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=4.5e-40 Score=358.95 Aligned_cols=193 Identities=26% Similarity=0.446 Sum_probs=161.9
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC--ccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-c
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ--AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-S 352 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-t 352 (478)
+++|+|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.+||+++.. +.+++++||+|++.+|+. |
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 46999999999999999999999999999999999999885 8999999998742 346679999999999975 9
Q ss_pred HHHHHhcCC----C-CCCHHHHHHHHHHhcHHHHHHhC--CCCccccccC-CCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 048556 353 IKDNINYGK----D-GASIAEIMAAAELANAAKFIDSL--PQGLDTMVGE-HGTQLSGGQKQRIAIARAILKDPRILLLD 424 (478)
Q Consensus 353 i~eNl~~~~----~-~~~~~~~~~a~~~~~~~~~i~~l--p~g~~t~~~~-~g~~LSgGq~Qrl~lARall~~~~ililD 424 (478)
++||+.++. + ..+.++..+. +++.++.+ ++..||.+|+ ....||||||||++|||||+.+|++++||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999998753 2 2233332221 23444443 3344788875 47889999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchh--hhhcCEEEEEeCCEEee
Q 048556 425 EATSALDAESERVVQEALDKIM-INRTTVIVAHRLST--VRNADLIAVIHQGKLVE 477 (478)
Q Consensus 425 Epts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~vl~~G~i~~ 477 (478)
|||++||+.++..+.+.|+++. +++|+|+++|+++. .+.+|++++|++|+++.
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~ 287 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLF 287 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEE
Confidence 9999999999999999999876 57999999999984 45699999999999874
No 309
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=9.5e-40 Score=382.84 Aligned_cols=210 Identities=26% Similarity=0.483 Sum_probs=181.5
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
..|+++|+++.|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+.
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 469999999999632 3579999999999999999999999999999999999999999999999999865 45667889
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 339 IGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 339 i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
++|+||++.+|+. |++||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999976 99999987531 112222211 234455555 6777777888999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
.+|+++||||||++||+.+++.+++.|++..+++|+|++||+++.+.. ||||++|++|+++.
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~ 1140 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYC 1140 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998778999999999999876 99999999999864
No 310
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.6e-38 Score=367.40 Aligned_cols=209 Identities=20% Similarity=0.359 Sum_probs=177.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-|+++|+++.|+++ .+++++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.++.. +....|+.|
T Consensus 1937 ~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1937 ILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred eEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 59999999999642 2579999999999999999999999999999999999999999999999999865 345678889
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
||+||++.+++. |++||+.+... ....+++.+. +.+.++.+ |++........+||||||||++|||||+.
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~-----v~~lLe~l--gL~~~~dk~~~~LSGGqKqRLslA~ALi~ 2087 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKV-----ANWSIQSL--GLSLYADRLAGTYSGGNKRKLSTAIALIG 2087 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999875 99999986421 1222222211 22344444 56666667788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|++++|||||+|||+.+++.+++.|+++. +++|+|++||+++.++. ||||++|++|+++.
T Consensus 2088 ~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~ 2150 (2272)
T TIGR01257 2088 CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQC 2150 (2272)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998874 57899999999999887 99999999999864
No 311
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=348.11 Aligned_cols=203 Identities=21% Similarity=0.378 Sum_probs=170.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 338 (478)
-++++|+++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 488999974 36999999999999999999999999999999999999999999999999877654 346778
Q ss_pred eEEEecCC---CCCc-ccHHHHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHH
Q 048556 339 IGLVSQEP---VLFT-SSIKDNINYGKDG--------ASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQK 405 (478)
Q Consensus 339 i~~v~Q~~---~lf~-~ti~eNl~~~~~~--------~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~ 405 (478)
++|+||++ .+|. .|++||+.++... .+.++ ....+.++++.+ |+. ........+||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHAD-----EQQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHH-----HHHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 4665 4999999875311 01111 112234566665 563 456777889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++.
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISG 475 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999875 47899999999998866 99999999999864
No 312
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1e-39 Score=312.59 Aligned_cols=177 Identities=28% Similarity=0.478 Sum_probs=147.5
Q ss_pred eeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCC---CcccHHHHHhcC
Q 048556 284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVL---FTSSIKDNINYG 360 (478)
Q Consensus 284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l---f~~ti~eNl~~~ 360 (478)
|+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. ..++.++|+||++.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998763 246789999999876 456999999875
Q ss_pred CCC-------CC---HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q 048556 361 KDG-------AS---IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430 (478)
Q Consensus 361 ~~~-------~~---~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~L 430 (478)
... .. .+++.++++.. |++........+||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRV-----------GLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHh-----------CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 310 01 12233333333 4444445566789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 431 DAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 431 D~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+.+++.+.+.|+++. +++|+|++||+++.+.. ||+++++ +|++++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~ 192 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIA 192 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe
Confidence 9999999999999875 47899999999998765 9999999 799874
No 313
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=4.9e-40 Score=358.14 Aligned_cols=200 Identities=23% Similarity=0.372 Sum_probs=166.5
Q ss_pred CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC---ccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc
Q 048556 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS 351 (478)
Q Consensus 275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 351 (478)
++++|+|+|+++++||.++|+||||||||||+++|+|..+|. +|+|.+||.++. ...+++.++||+|++.+++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 467999999999999999999999999999999999999885 799999999875 35678899999999999965
Q ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHh--CCCCccccccCC--CCCCChHHHHHHHHHHHHcCCCCEEEEeCC
Q 048556 352 -SIKDNINYGKDGASIAEIMAAAELANAAKFIDS--LPQGLDTMVGEH--GTQLSGGQKQRIAIARAILKDPRILLLDEA 426 (478)
Q Consensus 352 -ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~--lp~g~~t~~~~~--g~~LSgGq~Qrl~lARall~~~~ililDEp 426 (478)
|++||+.++.....+.++.+..+...+++.++. +++..||.+|+. +..||||||||++|||||+.+|++++||||
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP 193 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence 999999876421111000011122234455554 445679999984 478999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCch-h-hhhcCEEEEEeCCEEee
Q 048556 427 TSALDAESERVVQEALDKIM-INRTTVIVAHRLS-T-VRNADLIAVIHQGKLVE 477 (478)
Q Consensus 427 ts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~-~~~~d~i~vl~~G~i~~ 477 (478)
||+||+.+...+++.++++. +++|+|+++|+++ . .+.+|++++|++|+++.
T Consensus 194 tsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~ 247 (617)
T TIGR00955 194 TSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY 247 (617)
T ss_pred CcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence 99999999999999999886 4799999999996 3 56799999999999975
No 314
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8e-40 Score=311.57 Aligned_cols=179 Identities=34% Similarity=0.520 Sum_probs=153.7
Q ss_pred cEEEEeEEEECCCCCC------CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH
Q 048556 260 DIELKDIYFSYPSRPG------EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK 333 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~------~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~ 333 (478)
-++++|+++.|+.... ..+++||||+|++||+++|||+|||||||+.|+|+|+++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 3789999999964321 36899999999999999999999999999999999999999999999999987765
Q ss_pred HhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 334 WIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 334 ~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
.....+++.+.++.+++.+. .......+|||||+||++||||
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~----------~~~ryPhelSGGQrQRi~IARA 123 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEE----------FLYRYPHELSGGQRQRIGIARA 123 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHH----------HhhcCCcccCchhhhhHHHHHH
Confidence 11223456666666654331 3345578999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~ 478 (478)
|.-+|+++++|||||+||...+++|.+.+.++.+ +-|.++|||+++.+++ ||||.||..|+|||.
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~ 191 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEI 191 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEe
Confidence 9999999999999999999999999999988753 6899999999999999 999999999999973
No 315
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.1e-39 Score=316.77 Aligned_cols=210 Identities=33% Similarity=0.501 Sum_probs=175.0
Q ss_pred CccEEEEeEEEECCCCCC--------CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC
Q 048556 258 RGDIELKDIYFSYPSRPG--------EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE 329 (478)
Q Consensus 258 ~~~i~~~~v~~~y~~~~~--------~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 329 (478)
+.-++.+|+...|+-+.+ ..+.+++||+.++||.+||||+||||||||-++|+++.+++ |+|.++|.++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 345899999999874321 25799999999999999999999999999999999999886 999999999998
Q ss_pred CCHHH---hhcceEEEecCCC--CCc-ccHHHHHhcC----CCCCCHH----HHHHHHHHhcHHHHHHhCCCCccccccC
Q 048556 330 FQLKW---IRGKIGLVSQEPV--LFT-SSIKDNINYG----KDGASIA----EIMAAAELANAAKFIDSLPQGLDTMVGE 395 (478)
Q Consensus 330 ~~~~~---~r~~i~~v~Q~~~--lf~-~ti~eNl~~~----~~~~~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~ 395 (478)
++.++ +|+++-.|+|||+ |-+ .||.+-|.-| .|..+.. ++.+|++.+|++. .....
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp----------~~r~R 422 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP----------ATRNR 422 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh----------hHhhc
Confidence 88766 4789999999997 333 3776666544 4454443 3444444444332 23356
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeC
Q 048556 396 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ 472 (478)
Q Consensus 396 ~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~ 472 (478)
.+.++|||||||||||||++-+|++++||||||+||..-+.+|.+.++++. .+-+-++|||++..++. ||+++||.+
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 789999999999999999999999999999999999999999999999874 46799999999999998 999999999
Q ss_pred CEEeeC
Q 048556 473 GKLVEK 478 (478)
Q Consensus 473 G~i~~~ 478 (478)
|+|||+
T Consensus 503 GkiVE~ 508 (534)
T COG4172 503 GKIVEQ 508 (534)
T ss_pred CEEeee
Confidence 999985
No 316
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-39 Score=315.22 Aligned_cols=198 Identities=27% Similarity=0.351 Sum_probs=160.5
Q ss_pred cEEEEeEEEECCCC-----------------CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 260 DIELKDIYFSYPSR-----------------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 260 ~i~~~~v~~~y~~~-----------------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+|+++||++.|... ...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 46777776666431 1246899999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCc-ccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFT-SSIKDNINYGK--DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ 399 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNl~~~~--~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~ 399 (478)
+|. +++++|++.+++ .|++||+.++. ...+.++..+.. .+.++.+ |++..+.....+
T Consensus 84 ~g~-------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~ 143 (264)
T PRK13546 84 NGE-------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMT-----PKIIEFS--ELGEFIYQPVKK 143 (264)
T ss_pred CCE-------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhcCCccc
Confidence 984 456788877765 49999998642 122333333221 1222222 455566667889
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||||+||++||||++.+|++|||||||++||+.+.+.+.+.|.++. .++|+|++||++..+.. ||+|++|++|++++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998864 47899999999998876 99999999999875
No 317
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-39 Score=332.76 Aligned_cols=198 Identities=25% Similarity=0.363 Sum_probs=160.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++|++|.|++...+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 48999999999754335799999999999999999999999999999999999999999999999751
Q ss_pred EEEecCCCCCc-ccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFT-SSIKDNINYGK--DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~-~ti~eNl~~~~--~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
++++.+.+++ .|++||+.+.. ...+.++..+. +.+.++.+ |++.........||||||||++|||||+.
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~-----i~elLe~l--gL~~~ld~~~~~LSGGQrQRVaLArAL~~ 160 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEI-----IPEIIEFA--DIGKFIYQPVKTYSSGMKSRLGFAISVHI 160 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHH-----HHHHHHHc--CChhHhhCCcccCCHHHHHHHHHHHHHHh
Confidence 1233344444 49999998743 22233333221 12233333 45555566778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 161 ~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~ 223 (549)
T PRK13545 161 NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKE 223 (549)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998875 46899999999998866 99999999999874
No 318
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=3.5e-39 Score=287.89 Aligned_cols=143 Identities=38% Similarity=0.601 Sum_probs=134.3
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||. +.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 478999999963 36999999999999999999999999999999999999999999999984 4799
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556 341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420 (478)
Q Consensus 341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i 420 (478)
|+|| ||+||+||++||||++++|++
T Consensus 67 ~~~~-------------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 67 YFEQ-------------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEcc-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 9999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556 421 LLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGK 474 (478)
Q Consensus 421 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~ 474 (478)
+||||||++||+.+...+.+.++++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999886 4799999999999866 89999999996
No 319
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-39 Score=342.88 Aligned_cols=209 Identities=26% Similarity=0.374 Sum_probs=169.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC-HHHhhcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ-LKWIRGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~ 338 (478)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .+..++.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4889999731 4899999999999999999999999999999999999999999999999886543 3445778
Q ss_pred eEEEecCCC---CCc-ccHHHHHhcCCCCC-CHHH--HHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHH
Q 048556 339 IGLVSQEPV---LFT-SSIKDNINYGKDGA-SIAE--IMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAI 410 (478)
Q Consensus 339 i~~v~Q~~~---lf~-~ti~eNl~~~~~~~-~~~~--~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~l 410 (478)
++|+||++. +|+ .|+.||+.++.... .... .........+.+++..+ |++ ........+||||||||++|
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrl~l 407 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL--NIKTPSREQLIMNLSGGNQQKAIL 407 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhc--CcccCCccCccccCCHHHHHHHHH
Confidence 999999973 665 59999998753211 0000 00000112234566665 563 34567788999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||++.+|++|||||||++||+.+.+.+++.|+++. .+.|+|++||+++.+.. ||++++|++|++++
T Consensus 408 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 408 GRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAG 476 (501)
T ss_pred HHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999998875 46899999999998866 99999999999864
No 320
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.2e-38 Score=343.78 Aligned_cols=199 Identities=29% Similarity=0.423 Sum_probs=164.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 3889999999962 24799999999999999999999999999999999999999999999875 2469
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC-----------------CCH---------HHHHHHHHHhc-------HHHHHHhC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDG-----------------ASI---------AEIMAAAELAN-------AAKFIDSL 385 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~-----------------~~~---------~~~~~a~~~~~-------~~~~i~~l 385 (478)
+||||++.+|+. |++||+.++... ..+ +++.++++..+ +.+.++.+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999999875 999999875310 001 12333333333 22344444
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-c
Q 048556 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-A 464 (478)
Q Consensus 386 p~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~ 464 (478)
|++. ......+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++. ++|+|+|||+++.+.. |
T Consensus 151 --~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 4432 35667899999999999999999999999999999999999999999999876 3699999999999877 8
Q ss_pred CEEEEEeCCEEe
Q 048556 465 DLIAVIHQGKLV 476 (478)
Q Consensus 465 d~i~vl~~G~i~ 476 (478)
|++++|++|+++
T Consensus 226 d~v~~l~~g~i~ 237 (552)
T TIGR03719 226 GWILELDRGRGI 237 (552)
T ss_pred CeEEEEECCEEE
Confidence 999999999975
No 321
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.8e-39 Score=344.50 Aligned_cols=199 Identities=28% Similarity=0.396 Sum_probs=163.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +..+
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 3899999999962 24799999999999999999999999999999999999999999999874 2469
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC----------------CCH----------HHHHHHHH-------HhcHHHHHHhC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDG----------------ASI----------AEIMAAAE-------LANAAKFIDSL 385 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~----------------~~~----------~~~~~a~~-------~~~~~~~i~~l 385 (478)
+||||++.+++. |++||+.++... ... .++.++++ ...+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999876 999999875210 000 01111111 11233444544
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-c
Q 048556 386 PQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-A 464 (478)
Q Consensus 386 p~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~ 464 (478)
|++ .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++.. .|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 453 2456678999999999999999999999999999999999999999999998863 599999999999877 9
Q ss_pred CEEEEEeCCEEe
Q 048556 465 DLIAVIHQGKLV 476 (478)
Q Consensus 465 d~i~vl~~G~i~ 476 (478)
|+|++|++|+++
T Consensus 228 d~i~~l~~g~i~ 239 (556)
T PRK11819 228 GWILELDRGRGI 239 (556)
T ss_pred CeEEEEeCCEEE
Confidence 999999999975
No 322
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=288.08 Aligned_cols=208 Identities=32% Similarity=0.548 Sum_probs=175.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC----------
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE---------- 329 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~---------- 329 (478)
.++++|+.++|.. ..+|+++|++.++|+.+.|+|.|||||||+++.+.-+..|+.|+|.+||..+.-
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 5899999999964 469999999999999999999999999999999999999999999999987631
Q ss_pred CC---HHHhhcceEEEecCCCCCcc-cHHHHHhcCCC---CC-CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556 330 FQ---LKWIRGKIGLVSQEPVLFTS-SIKDNINYGKD---GA-SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401 (478)
Q Consensus 330 ~~---~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~---~~-~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 401 (478)
.| .+.+|.+.++|+|+..|.+. |+.||+.-+.- .. ..+.+.+| ..++.+. |++......+..||
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~A------e~~L~kV--Gi~ek~~~YP~~LS 154 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERA------EKYLAKV--GIAEKADAYPAHLS 154 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHH------HHHHHHh--CchhhhhcCccccC
Confidence 22 34568889999999999986 99999864321 11 22333333 2333333 66666667789999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~ 478 (478)
|||.||.+|||||.-+|+++++|||||+|||+-.-++.+.++.+. +++|+++|||.+.+.++ +..++.+.+|.|-|+
T Consensus 155 GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~ 233 (256)
T COG4598 155 GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEE 233 (256)
T ss_pred chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceeccc
Confidence 999999999999999999999999999999999999999999886 58999999999999999 799999999998663
No 323
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.9e-39 Score=313.27 Aligned_cols=199 Identities=23% Similarity=0.354 Sum_probs=158.8
Q ss_pred EeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE-----------ECCeecCCCCH
Q 048556 264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-----------IDGVNLKEFQL 332 (478)
Q Consensus 264 ~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~-----------~~g~~~~~~~~ 332 (478)
.||+|+|++ ..++|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|+++.++..
T Consensus 4 ~~~~~~y~~--~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 478899963 236999999 4999999999999999999999999999999999996 88988876543
Q ss_pred HHhhc--ceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556 333 KWIRG--KIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI 410 (478)
Q Consensus 333 ~~~r~--~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l 410 (478)
+..+. .++|++|.+.+++.++.+|+.........+ ....++++.+ |++..+.....+||||||||++|
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~--------~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDER--------GKLDELVDQL--ELRHVLDRNIDQLSGGELQRVAI 150 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHH--------HHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHH
Confidence 33332 478999988777656556555421111111 1123444444 66666777889999999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
|||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|+ |++.
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~ 217 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPG 217 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCC
Confidence 9999999999999999999999999999999988754 6899999999999885 99999995 4443
No 324
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.5e-39 Score=311.08 Aligned_cols=182 Identities=23% Similarity=0.405 Sum_probs=151.3
Q ss_pred EECCCCCCCcccccceeeec-----CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEE
Q 048556 268 FSYPSRPGEQIFNGFSLSIP-----SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342 (478)
Q Consensus 268 ~~y~~~~~~~~l~~is~~i~-----~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 342 (478)
|+|++ ..+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .++|+
T Consensus 1 ~~y~~--~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPT--MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCcc--cccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 56764 2458888888886 79999999999999999999999999999999999884 58999
Q ss_pred ecCCCC-CcccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556 343 SQEPVL-FTSSIKDNINYGKDGAS--IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419 (478)
Q Consensus 343 ~Q~~~l-f~~ti~eNl~~~~~~~~--~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ 419 (478)
||++.. +..|++||+.+...... .+.. .+.++.+ |++........+|||||+||++|||||+.+|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~---------~~~l~~l--~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFK---------TEIAKPL--QIEQILDREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHH---------HHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 999875 57899999976432211 1111 2233333 56656667788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556 420 ILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGK 474 (478)
Q Consensus 420 ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~ 474 (478)
++||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||++++|+++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEP 193 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999998753 6899999999999886 99999997653
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-38 Score=341.48 Aligned_cols=198 Identities=25% Similarity=0.435 Sum_probs=162.9
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 689999999963 47999999999999999999999999999999999999999999999872 3699
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCC----------------CCHH------HHHH-------HHHHhcHHHHHHhCCCCcc
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDG----------------ASIA------EIMA-------AAELANAAKFIDSLPQGLD 390 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~----------------~~~~------~~~~-------a~~~~~~~~~i~~lp~g~~ 390 (478)
|++|++.+|.. |++||+.++... ...+ +..+ ......+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988876 999999875310 0000 0000 00112344556655 665
Q ss_pred ccc-cCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEE
Q 048556 391 TMV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIA 468 (478)
Q Consensus 391 t~~-~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~ 468 (478)
... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++ .++|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 433 345789999999999999999999999999999999999999999999975 46899999999998876 99999
Q ss_pred EEeCCEEe
Q 048556 469 VIHQGKLV 476 (478)
Q Consensus 469 vl~~G~i~ 476 (478)
+|++|+++
T Consensus 224 ~l~~g~i~ 231 (530)
T PRK15064 224 DLDYGELR 231 (530)
T ss_pred EEeCCEEE
Confidence 99999984
No 326
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=8.4e-39 Score=341.76 Aligned_cols=203 Identities=19% Similarity=0.358 Sum_probs=169.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH-hhcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW-IRGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 338 (478)
-++++|+++ .+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+... .++.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 1599999999999999999999999999999999999999999999999988766544 4567
Q ss_pred eEEEecCC---CCCcc-cHHHHHhcCC----CCC-CHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHH
Q 048556 339 IGLVSQEP---VLFTS-SIKDNINYGK----DGA-SIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 339 i~~v~Q~~---~lf~~-ti~eNl~~~~----~~~-~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl 408 (478)
++|+||++ .+|+. |+.+|+.... +.. ...+ ....+.+++..+ |+. .........||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAR-----ENAVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHH-----HHHHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 99999985 37765 9999986421 110 1111 112244566665 665 456777889999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|+++.
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~ 483 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISG 483 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999998875 47899999999999876 99999999999874
No 327
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.4e-39 Score=341.44 Aligned_cols=208 Identities=25% Similarity=0.332 Sum_probs=167.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-CccEEEECCeecCC-CCHHHhhc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGVNLKE-FQLKWIRG 337 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~-~~~~~~r~ 337 (478)
-++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+....|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 5999999999963 3699999999999999999999999999999999998876 69999999987632 23344678
Q ss_pred ceEEEecCCCCCc---ccHHHHHhcCCCC----C--CHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHH
Q 048556 338 KIGLVSQEPVLFT---SSIKDNINYGKDG----A--SIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQR 407 (478)
Q Consensus 338 ~i~~v~Q~~~lf~---~ti~eNl~~~~~~----~--~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qr 407 (478)
.++|++|++.++. .|+++++..+... . ..++. ...+.+.++.+ |++. .......+||||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qr 409 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQ-----QKLAQQWLDIL--GIDKRTADAPFHSLSWGQQRL 409 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHH-----HHHHHHHHHHc--CCchhhccCchhhCCHHHHHH
Confidence 8999999987643 3677776543110 0 01111 11123445544 5655 5566778999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEecCchhhhh--cCEEEEEeCCEEee
Q 048556 408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-N-RTTVIVAHRLSTVRN--ADLIAVIHQGKLVE 477 (478)
Q Consensus 408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~-~t~i~itH~~~~~~~--~d~i~vl~~G~i~~ 477 (478)
++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ + .|+|+|||+++.+.. ||++++|++|++++
T Consensus 410 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~ 483 (490)
T PRK10938 410 ALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYR 483 (490)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEE
Confidence 9999999999999999999999999999999999998753 3 469999999999864 79999999999875
No 328
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=8.7e-37 Score=312.11 Aligned_cols=420 Identities=15% Similarity=0.167 Sum_probs=297.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 42 ERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLLTLVM-LSSIPAIVLTAGVMSTVITKLASRGQTAYSIAA 120 (478)
Q Consensus 42 ~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (478)
+|++.|++.....+......++.+++.++....-++....++..+. +..+.+-.++.+.+.+.+.+...++++..++..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 6899999998888887777777777777666555554333344443 344444556667777788888888888888888
Q ss_pred HHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCCC
Q 048556 121 AVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMI----LEKGYK 196 (478)
Q Consensus 121 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv----~~g~ls 196 (478)
-...+...+.+.|-.|+.++.+....+...++........-.+.-....+..++..++.++-+.+-+..+ ..+.+|
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s 345 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLS 345 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcC
Confidence 8888888999999999999888776666655555433222222222222233333333332222111111 234566
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcc-------------cC-------CCCCC
Q 048556 197 GGDVINVIFC----VMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLID-------------AY-------DSNGV 252 (478)
Q Consensus 197 ~G~l~~~~~~----~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~-------------~~-------~~~~~ 252 (478)
...+...+.. ...+...+..+.-....+.+......|+.++.+.-.+.. .+ .++..
T Consensus 346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~ 425 (659)
T KOG0060|consen 346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG 425 (659)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence 6666554321 122223344444444455555666778877764211100 00 00000
Q ss_pred ccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH
Q 048556 253 KLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL 332 (478)
Q Consensus 253 ~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~ 332 (478)
........|++++|++.=|++ +..+.+|+||+|+.|+.+.|.||||||||+|+|.+.|+++..+|++.--...-
T Consensus 426 ~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~----- 499 (659)
T KOG0060|consen 426 KAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG----- 499 (659)
T ss_pred ccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-----
Confidence 001112469999999998864 44577889999999999999999999999999999999999999997422110
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCC-------CCCCHHHHHHHHHHhcHHHHHHhCCCCcccccc-CCCCCCChHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGK-------DGASIAEIMAAAELANAAKFIDSLPQGLDTMVG-EHGTQLSGGQ 404 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~-------~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~-~~g~~LSgGq 404 (478)
-+.+-|+||.|+.=.||+||-+.++. ..++|+++.+.++.+++.+.++.. +|+|+.+. +-...||+||
T Consensus 500 ---~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~-ggld~~~~~dW~dvLS~GE 575 (659)
T KOG0060|consen 500 ---PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLERE-GGLDQQVDWDWMDVLSPGE 575 (659)
T ss_pred ---CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHh-CCCCchhhccHHhhcCHHH
Confidence 14589999999988999999999972 346889999999999998877665 68887664 6788999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473 (478)
Q Consensus 405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G 473 (478)
+||+|.||.++++|++-||||+|||+|.+.|..+.+.+++ .+.|.|-|+||-+.-+..|.++-|+.+
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHHHHhhhhEEEEecCC
Confidence 9999999999999999999999999999999999999887 478999999999999999999999764
No 329
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-38 Score=337.78 Aligned_cols=206 Identities=19% Similarity=0.328 Sum_probs=168.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH-Hhhcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK-WIRGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 338 (478)
-|+++|+++.| +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 48999999974 2599999999999999999999999999999999999999999999999999776643 34677
Q ss_pred eEEEecCC---CCCcc-cHHHHHhc-----CCCC---CCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHH
Q 048556 339 IGLVSQEP---VLFTS-SIKDNINY-----GKDG---ASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQK 405 (478)
Q Consensus 339 i~~v~Q~~---~lf~~-ti~eNl~~-----~~~~---~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~ 405 (478)
++|+||++ .+|+. |+.+|..+ ..+. .+..+. ...+.++++.+ |+. ........+||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRM-----KSDTQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHH-----HHHHHHHHHhc--CccCCCcccccccCCcHHH
Confidence 99999985 36764 77776322 1111 011111 12234455555 443 235777889999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||++||||++.+|++|||||||++||+.+.+.+++.|+++. +++|+|++||+++.+.. ||++++|++|+++.
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~ 471 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAG 471 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999998875 47899999999998866 99999999999873
No 330
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.1e-38 Score=372.46 Aligned_cols=208 Identities=24% Similarity=0.428 Sum_probs=172.5
Q ss_pred EEEEeEEEECCCC-CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC---CCccEEEECCeecCCCCHHHhh
Q 048556 261 IELKDIYFSYPSR-PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGVNLKEFQLKWIR 336 (478)
Q Consensus 261 i~~~~v~~~y~~~-~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~r 336 (478)
++++||+++|+.+ .++++|+|+|+++++||++||+||||||||||+++|+|+.+ |++|+|.+||+++. ..+|
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~ 835 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQ 835 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhh
Confidence 7899999999522 13579999999999999999999999999999999999997 78899999999984 2478
Q ss_pred cceEEEecCCCCC-cccHHHHHhcCC----C-CCCHHHHHHHHHHhcHHHHHH--hCCCCccccccCCCCCCChHHHHHH
Q 048556 337 GKIGLVSQEPVLF-TSSIKDNINYGK----D-GASIAEIMAAAELANAAKFID--SLPQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 337 ~~i~~v~Q~~~lf-~~ti~eNl~~~~----~-~~~~~~~~~a~~~~~~~~~i~--~lp~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
+.++||+|++.++ ..|++||+.++. | ..++++.++. +++.++ .+.+-.|+.+|+.+..||||||||+
T Consensus 836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~-----v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl 910 (1394)
T TIGR00956 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEY-----VEEVIKLLEMESYADAVVGVPGEGLNVEQRKRL 910 (1394)
T ss_pred cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHH
Confidence 8999999987655 469999999752 2 1233332211 122222 2333468899988889999999999
Q ss_pred HHHHHHcCCCC-EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhh--hhcCEEEEEeCC-EEee
Q 048556 409 AIARAILKDPR-ILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTV--RNADLIAVIHQG-KLVE 477 (478)
Q Consensus 409 ~lARall~~~~-ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~--~~~d~i~vl~~G-~i~~ 477 (478)
+|||||+.+|+ +|+||||||+||+.++..+++.|+++. +++|+|+++|+++.. +.+|++++|++| ++++
T Consensus 911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~ 984 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVY 984 (1394)
T ss_pred HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEE
Confidence 99999999997 999999999999999999999999884 579999999999863 569999999997 9875
No 331
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-39 Score=301.31 Aligned_cols=186 Identities=32% Similarity=0.520 Sum_probs=161.8
Q ss_pred cceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC----CHHHhhcceEEEecCCCCCcc-cHHH
Q 048556 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF----QLKWIRGKIGLVSQEPVLFTS-SIKD 355 (478)
Q Consensus 281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~Q~~~lf~~-ti~e 355 (478)
+++|+.+.-.++||-|+||||||||+|+|+|+..|++|.|.+||.-+.+- ...--+++||||+||..||+. |++-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 58888888789999999999999999999999999999999999877543 233347889999999999997 9999
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 048556 356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 435 (478)
Q Consensus 356 Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~ 435 (478)
|++||....+.++..+.+..- |+...+...+.+||||||||+||+|||+.+|++|++|||.|+||...+
T Consensus 96 NL~YG~~~~~~~~fd~iv~lL-----------GI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALL-----------GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHh-----------CcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999998766555665555444 555556666789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 436 RVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 436 ~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++++-.|+++.+ +.-+++|||.+.++.. ||++++|++|++..
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A 209 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKA 209 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEe
Confidence 999999999875 4679999999998766 99999999999853
No 332
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-38 Score=337.68 Aligned_cols=190 Identities=23% Similarity=0.401 Sum_probs=160.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.+
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 5999999999963 46999999999999999999999999999999999999999999999872 479
Q ss_pred EEEecCCC--CCc-ccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHH
Q 048556 340 GLVSQEPV--LFT-SSIKDNINYGK-DGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 340 ~~v~Q~~~--lf~-~ti~eNl~~~~-~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
+|+||++. +++ .|+++|+.+.. +....+++.+ .+..+ |+. ........+||||||||++||||+
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~~LSgGq~qrv~la~al 453 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRG---------TLGRL--LFSQDDIKKSVKVLSGGEKGRMLFGKLM 453 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHH---------HHHHc--CCChhHhcCcccccCHHHHHHHHHHHHH
Confidence 99999974 444 49999997532 1112223333 33333 442 345567889999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
+.+|++|||||||++||+.+.+.+.+.|++. +.|+|+|||+++.+.. ||++++|++|+++
T Consensus 454 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 454 MQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999886 4599999999999876 9999999999986
No 333
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4e-39 Score=298.74 Aligned_cols=203 Identities=25% Similarity=0.499 Sum_probs=177.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.+++++|+++|.+ ..+++|+||++++|++.+++|||||||||.+++|+|+++|++|+|.++|.+++.. .+++|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~----~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKNRI 74 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh----hhhhc
Confidence 3789999999963 5799999999999999999999999999999999999999999999999998653 47789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
||+|.+..|++- |+.|-+.|... .....|+. ..+..|++++ ++-........+||.|..|+|.+--|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~-----~~~~~wLer~--~i~~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ-----KKLQAWLERL--EIVGKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHhc--cccccccchHHHhhhhhhHHHHHHHHHhc
Confidence 999999999976 99999998642 22333333 2345688877 34445566788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
+|+++|||||||||||.+.+.+.+.+.+++ ++.|||+.||+|+-++. ||+++.|++|+.|
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V 209 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV 209 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE
Confidence 999999999999999999999999998886 58999999999999987 9999999999865
No 334
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-38 Score=276.88 Aligned_cols=208 Identities=31% Similarity=0.515 Sum_probs=171.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee--cCCC----CHH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN--LKEF----QLK 333 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~--~~~~----~~~ 333 (478)
+|+++|++|.|.. ..+|-||+|+.+.||.+.+.||||+|||||++.|.-+.-|.+|+..|-|.. .+.. ...
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 4899999999963 479999999999999999999999999999999999999999999997753 3332 245
Q ss_pred HhhcceEEEecCCCCCcc-cHHHHHhcCCC---CCCHHH-HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556 334 WIRGKIGLVSQEPVLFTS-SIKDNINYGKD---GASIAE-IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 334 ~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~~-~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
++|+.+|+|+|.-+|.+. |+-||+.-..- ..++++ ..+| .+.+..| .+...-...+-.|||||.||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a------~ellkrl--rl~~~adr~plhlsggqqqrv 150 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA------EKLLKRL--RLKPYADRYPLHLSGGQQQRV 150 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHH------HHHHHHh--ccccccccCceecccchhhhH
Confidence 689999999999999987 99999974321 112222 2222 2223332 233333445678999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478 (478)
Q Consensus 409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~ 478 (478)
||||||+-+|++|++||||++|||+-..++.+.|+++.+ +.|-++|||..+..++ +.+++.|++|+|+|.
T Consensus 151 aiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~ 222 (242)
T COG4161 151 AIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEee
Confidence 999999999999999999999999999999999999875 7899999999999988 999999999999984
No 335
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-38 Score=288.19 Aligned_cols=203 Identities=29% Similarity=0.489 Sum_probs=176.6
Q ss_pred CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCC--CCcc-
Q 048556 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV--LFTS- 351 (478)
Q Consensus 275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~- 351 (478)
++++|+++|++|++|+++.|+|.||||||||++.++|-..|++|+|+|||.|++.++.......++-|+|+|- .++.
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 3579999999999999999999999999999999999999999999999999999999998888999999995 5665
Q ss_pred cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 048556 352 SIKDNINYGKDG---ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428 (478)
Q Consensus 352 ti~eNl~~~~~~---~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts 428 (478)
||.||+.++... .....-...-......+.+..+|.|++..++.+..-|||||||-++|+.|.++.|++|+|||-|+
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA 177 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence 999999986421 11111112233444566788999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc--CCCeEEEEecCchh-hhhcCEEEEEeCCEEee
Q 048556 429 ALDAESERVVQEALDKIM--INRTTVIVAHRLST-VRNADLIAVIHQGKLVE 477 (478)
Q Consensus 429 ~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~-~~~~d~i~vl~~G~i~~ 477 (478)
||||.+.+.+++.-.+.- .+-|.++|||+++. +.+.+|.++|++|+||-
T Consensus 178 ALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 178 ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred cCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEE
Confidence 999999999999877653 35799999999986 45589999999999974
No 336
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.6e-38 Score=317.94 Aligned_cols=175 Identities=34% Similarity=0.543 Sum_probs=147.9
Q ss_pred EEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHH
Q 048556 294 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIM 370 (478)
Q Consensus 294 ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~ 370 (478)
|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .++.++|++|++.+|+. |++||+.++.. ..+.++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999977654 36789999999999986 99999998642 12222221
Q ss_pred HHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--C
Q 048556 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--N 448 (478)
Q Consensus 371 ~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~ 448 (478)
+ .+.++++.+ |++........+||||||||++|||||+++|+++||||||++||+.+++.+.+.|+++.+ +
T Consensus 79 ~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g 151 (325)
T TIGR01187 79 P-----RVLEALRLV--QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG 151 (325)
T ss_pred H-----HHHHHHHHc--CCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 1 123444444 566666777889999999999999999999999999999999999999999999988753 6
Q ss_pred CeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 449 RTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 449 ~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|+|+|||+++.+.. ||+|++|++|++++
T Consensus 152 ~tiiivTHd~~e~~~~~d~i~vl~~G~i~~ 181 (325)
T TIGR01187 152 ITFVFVTHDQEEAMTMSDRIAIMRKGKIAQ 181 (325)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 899999999998765 99999999999875
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-37 Score=282.05 Aligned_cols=154 Identities=42% Similarity=0.689 Sum_probs=144.5
Q ss_pred EEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEE
Q 048556 263 LKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342 (478)
Q Consensus 263 ~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 342 (478)
++|++|.|++ .++++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++.......+++.++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6899999964 3699999999999999999999999999999999999999999999999999887777788899999
Q ss_pred ecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 048556 343 SQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILL 422 (478)
Q Consensus 343 ~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ili 422 (478)
+| |||||+||++||||++.+|++++
T Consensus 79 ~q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 79 PQ-------------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred ee-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 99 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556 423 LDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGK 474 (478)
Q Consensus 423 lDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~ 474 (478)
|||||++||..++..+.+.+++..+ ++|++++||+++.+.. ||+++++++|+
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999988754 4899999999999988 69999999985
No 338
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=6.2e-38 Score=298.06 Aligned_cols=177 Identities=17% Similarity=0.263 Sum_probs=143.1
Q ss_pred ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE-ECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHH
Q 048556 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-IDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKD 355 (478)
Q Consensus 278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~-~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~e 355 (478)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.+++.+|++ |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 68999999999999999999999999999999999999999997 777532 13456778886 9999
Q ss_pred HHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556 356 NINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433 (478)
Q Consensus 356 Nl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~ 433 (478)
|+.+... ..+.++..+.+ .+ ...++.. .......||||||||++||||++++|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~-----~~-~~~l~~~----~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFC-----YQ-LTQLEQC----YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHH-----HH-HhChhHH----hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 9987432 22333332221 11 1223323 33445679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 434 SERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 434 ~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+++.+.+.+.+..+++|+|++||+++.+.. ||++++|++|++++
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~ 183 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITM 183 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEE
Confidence 999999988655556899999999999865 99999999999875
No 339
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.1e-38 Score=283.30 Aligned_cols=203 Identities=29% Similarity=0.500 Sum_probs=177.4
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+++||+++|.+ +.+++|+|++|++|.+++|+||||+|||||+.+++++.++++|+|.++|.++..++.+++.+.++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 678999999963 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCH-------H-HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDGASI-------A-EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~~~~-------~-~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
.+-|+.++-.- ||+|=+.||+-.++. . .+.+|++ ++ .+...-++.-.+||||||||.-+|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aie------yl-----~L~~l~dryLd~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIE------YL-----HLEDLSDRYLDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHH------Hh-----cccchHHHhHHhcccchhhhhhhh
Confidence 99999998654 999999999733332 1 2233322 22 233333445578999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
..+..+.+.++||||-.+||-+....+++.|+++.+ +||+++|-|+.+++.. +|.|+-|++|+++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~ 216 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVK 216 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEe
Confidence 999999999999999999999999999999998864 7999999999999887 89999999999975
No 340
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6.7e-37 Score=330.13 Aligned_cols=192 Identities=24% Similarity=0.403 Sum_probs=160.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++ + ..|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence 4999999999963 4699999999999999999999999999999999999999999999854 2 159
Q ss_pred EEEecCCC-CCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHH
Q 048556 340 GLVSQEPV-LFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 340 ~~v~Q~~~-lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~lARal 414 (478)
+|+||++. +++. |++||+.++.+.. ...+. . ..+.+..+ |+.. .......+||||||||++||||+
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~-~------~~~~l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~al 458 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREV-P------SRAYVGRF--NFKGSDQQKKVGQLSGGERNRVHLAKTL 458 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchH-H------HHHHHHhC--CCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 99999973 6654 9999999864311 11110 0 12344544 5543 34667789999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeC-CEEe
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQ-GKLV 476 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~-G~i~ 476 (478)
+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 459 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 459 KSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 99999999999999999999999999999863 489999999998876 999999987 5765
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.1e-37 Score=282.92 Aligned_cols=144 Identities=26% Similarity=0.359 Sum_probs=130.7
Q ss_pred EeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEe
Q 048556 264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVS 343 (478)
Q Consensus 264 ~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 343 (478)
.|+++.|++ .+++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEc
Confidence 588999953 468888 49999999999999999999999999999999999999999863 78898
Q ss_pred cCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEE
Q 048556 344 QEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLL 423 (478)
Q Consensus 344 Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ilil 423 (478)
|++. ||||||||++||||++.+|++++|
T Consensus 68 q~~~----------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 68 QYID----------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred ccCC----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8653 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556 424 DEATSALDAESERVVQEALDKIM-I-NRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475 (478)
Q Consensus 424 DEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i 475 (478)
||||++||+.+++.+.+.+++.. + ++|+|++||+++.+.. ||++++|+++-.
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCc
Confidence 99999999999999999998874 3 3899999999999885 999999988744
No 342
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.3e-37 Score=329.53 Aligned_cols=192 Identities=26% Similarity=0.410 Sum_probs=159.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..+
T Consensus 324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred EEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 5999999999963 4699999999999999999999999999999999999999999999854 2 159
Q ss_pred EEEecCC-CCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHH
Q 048556 340 GLVSQEP-VLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 340 ~~v~Q~~-~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~lARal 414 (478)
+|+||++ .++.. |++||+.++.... ...+. . ..+.+..+ |+.. .......+||||||||++||||+
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~-~------~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~la~al 460 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREI-P------SRAYVGRF--NFKGGDQQKKVGVLSGGERNRLHLAKTL 460 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHH-H------HHHHHHhC--CCChhHhcCchhhCCHHHHHHHHHHHHH
Confidence 9999997 56665 9999998764211 11110 0 11234444 5532 34667789999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeC-CEEe
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQ-GKLV 476 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~-G~i~ 476 (478)
+.+|++|||||||++||+.+...+.+.|++.. .|+|+|||+++.+.. ||+|++|++ |++.
T Consensus 461 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 461 KQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 99999999999999999999999999998863 489999999998876 999999986 7765
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=7.5e-37 Score=334.37 Aligned_cols=195 Identities=25% Similarity=0.429 Sum_probs=160.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++||++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++ .+
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999963 46999999999999999999999999999999999999999999998 4332 59
Q ss_pred EEEecCC-CCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEP-VLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~-~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+|++|++ .+++. |+.||+.++.+.....+.. ..+.+++..+ |+. .........||||||||++||||++.
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRP-----RHVLGYLQDF--LFHPKRAMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchH-----HHHHHHHHhc--CCCHHHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 9999986 46665 9999998764322111100 1123344444 443 23455678899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEe-CCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIH-QGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~-~G~i~~ 477 (478)
+|++|||||||++||+.+...+.+.|++. +.|+|+|||+.+.+.. ||+|++++ +|++.+
T Consensus 458 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~ 518 (635)
T PRK11147 458 PSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGR 518 (635)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEE
Confidence 99999999999999999999999999875 4599999999999876 99999998 899864
No 344
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=331.16 Aligned_cols=190 Identities=26% Similarity=0.444 Sum_probs=158.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-|+++|+++.|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5899999999963 46999999999999999999999999999999999999999999999741 269
Q ss_pred EEEecCC--CCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHc
Q 048556 340 GLVSQEP--VLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 340 ~~v~Q~~--~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+|++|++ .+... |+.+++....+....+++ .+++..+ |+. .........||||||||++||||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~L~~~--~l~~~~~~~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKL---------RDYLGGF--GFQGDKVTEETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHH---------HHHHHHc--CCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence 9999985 34443 888887532222122222 3344444 443 2455667899999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
.+|++|||||||++||+.+...+.+.|+++ + .|+|+|||++.++.. ||+|++|++|+++
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVE 506 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999886 3 599999999999876 9999999999986
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.5e-36 Score=327.40 Aligned_cols=188 Identities=26% Similarity=0.337 Sum_probs=158.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++|++++|++ ..|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++ ..+
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999953 35999999999999999999999999999999999999999999885 159
Q ss_pred EEEecCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 340 GLVSQEPVLF-TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 340 ~~v~Q~~~lf-~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
+|+||++.++ ..|++||+.++......+. ...++++.+ |++........+|||||+||++|||||+.+|
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~--------~~~~~L~~l--~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSY--------YKSEIIKPL--QLERLLDKNVKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHH--------HHHHHHHHC--CCHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999998765 4599999987532222111 113444444 5655566778899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556 419 RILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475 (478)
Q Consensus 419 ~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i 475 (478)
++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. |||+++|++ ++
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~ 531 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EP 531 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cc
Confidence 99999999999999999999999998753 6899999999998876 999999965 54
No 346
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.3e-36 Score=330.53 Aligned_cols=190 Identities=28% Similarity=0.430 Sum_probs=155.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++|++|.|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..+
T Consensus 508 ~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 5999999999963 23699999999999999999999999999999999999999999999865 2469
Q ss_pred EEEecCCCCCcccHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHH
Q 048556 340 GLVSQEPVLFTSSIKDNINYG----KDGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 340 ~~v~Q~~~lf~~ti~eNl~~~----~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~lARal 414 (478)
+|++|++. ...++.+|..+. .+...++++.+.++.. |+.. ........||||||||++||||+
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~-----------gl~~~~~~~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF-----------GVTGNLALQPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHC-----------CCChHHhcCCccccCHHHHHHHHHHHHH
Confidence 99999863 222455553211 1233344444444333 3432 34456789999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
+.+|++|||||||++||+.+.+.+.+.+.+. +.|+|+|||++..+.. ||++++|++|+++
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999998775 3599999999999876 9999999999986
No 347
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-36 Score=284.06 Aligned_cols=207 Identities=27% Similarity=0.427 Sum_probs=173.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 338 (478)
-|+++||++.|.+ +++|+|||++|++||..+|+||||||||||+++++|.++|++|.+.+.|+....-+. .++|++
T Consensus 31 li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 4999999999964 589999999999999999999999999999999999999999999999999887776 899999
Q ss_pred eEEEecCCCC-C--cccHHHHHhcCC------C--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 048556 339 IGLVSQEPVL-F--TSSIKDNINYGK------D--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR 407 (478)
Q Consensus 339 i~~v~Q~~~l-f--~~ti~eNl~~~~------~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qr 407 (478)
||+|+-+-.. | ..+++|-+.-|. . ..++++..++ ...++.+ |.....+..-..||-|||||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a------~~lle~~--g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAA------QWLLELL--GAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHH------HHHHHHc--chhhhccCchhhcCHhHHHH
Confidence 9999875431 2 347777775332 1 3344443332 2233333 66667777789999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI---NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~---~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+-|||||+++|++|||||||++||...++.+.+.+.++.. ..++|+|||+.+.+.. .++++.+++|+++.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999988753 5789999999998877 59999999999875
No 348
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.1e-36 Score=351.04 Aligned_cols=208 Identities=24% Similarity=0.386 Sum_probs=168.9
Q ss_pred cEEEEeEEEECCCC----------CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC--CccEEEECCeec
Q 048556 260 DIELKDIYFSYPSR----------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGVNL 327 (478)
Q Consensus 260 ~i~~~~v~~~y~~~----------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~ 327 (478)
.++++||+|.++.. +.+++|+|+|+++++|+++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 68999999997521 123699999999999999999999999999999999999873 689999999886
Q ss_pred CCCCHHHhhcceEEEecCCCCCcc-cHHHHHhcCC----C-CCCHHH----HHHHHHHhcHHHHHHhCCCCccccccCCC
Q 048556 328 KEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGK----D-GASIAE----IMAAAELANAAKFIDSLPQGLDTMVGEHG 397 (478)
Q Consensus 328 ~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~----~-~~~~~~----~~~a~~~~~~~~~i~~lp~g~~t~~~~~g 397 (478)
.+ ..+++.++||+|++.+++. |++||+.++. | ..+.++ +.+.++..++.+ -.++.+|..+
T Consensus 947 ~~---~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~~ 1016 (1470)
T PLN03140 947 KQ---ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLPG 1016 (1470)
T ss_pred Ch---HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCCC
Confidence 42 4567789999999988875 9999998752 2 222222 223333333322 2366666443
Q ss_pred -CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchh--hhhcCEEEEEeC-
Q 048556 398 -TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLST--VRNADLIAVIHQ- 472 (478)
Q Consensus 398 -~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~vl~~- 472 (478)
..||||||||++|||+|+.+|++|+||||||+||+.++..+++.|+++. +++|+|+++|+++. .+.+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999999875 47899999999984 466999999996
Q ss_pred CEEee
Q 048556 473 GKLVE 477 (478)
Q Consensus 473 G~i~~ 477 (478)
|+++.
T Consensus 1097 G~~v~ 1101 (1470)
T PLN03140 1097 GQVIY 1101 (1470)
T ss_pred CEEEE
Confidence 88764
No 349
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=4.8e-36 Score=275.53 Aligned_cols=153 Identities=25% Similarity=0.452 Sum_probs=129.7
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD 355 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 355 (478)
.++|+|+||++++|++++|+||||||||||++++. +++|++.++|.. ..+ .++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 57999999999999999999999999999999985 368999998763 121 2445888887
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHHcCC--CCEEEEeCCCCCCCH
Q 048556 356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIAIARAILKD--PRILLLDEATSALDA 432 (478)
Q Consensus 356 Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~lARall~~--~~ililDEpts~LD~ 432 (478)
.++++.+ |+.. .+.+...+||||||||++||||++++ |+++||||||++||+
T Consensus 68 -----------------------~~~l~~~--~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 -----------------------LQFLIDV--GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred -----------------------HHHHHHc--CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 1233444 3433 36677899999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556 433 ESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQG 473 (478)
Q Consensus 433 ~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G 473 (478)
.+.+.+.+.|+++. .++|+|++||+++.++.||++++|++|
T Consensus 123 ~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g 164 (176)
T cd03238 123 QDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPG 164 (176)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCC
Confidence 99999999998875 478999999999999889999999664
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-36 Score=327.26 Aligned_cols=198 Identities=23% Similarity=0.340 Sum_probs=156.2
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 689999999963 479999999999999999999999999999999999999999999998742 378
Q ss_pred EEecCCCCCcccHHHHHhcCCCCC---C-----------HHHH---HHHH-------HHhcHHHHHHhCCCCcc-ccccC
Q 048556 341 LVSQEPVLFTSSIKDNINYGKDGA---S-----------IAEI---MAAA-------ELANAAKFIDSLPQGLD-TMVGE 395 (478)
Q Consensus 341 ~v~Q~~~lf~~ti~eNl~~~~~~~---~-----------~~~~---~~a~-------~~~~~~~~i~~lp~g~~-t~~~~ 395 (478)
|++|++..+..|+.+++.-+.... + ...+ .... ....+.+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 888865444445555443211000 0 0000 0000 011234455555 664 34566
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556 396 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGK 474 (478)
Q Consensus 396 ~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~ 474 (478)
...+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||++..+.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 77899999999999999999999999999999999999999999999875 4699999999999876 99999999999
Q ss_pred Ee
Q 048556 475 LV 476 (478)
Q Consensus 475 i~ 476 (478)
++
T Consensus 224 i~ 225 (638)
T PRK10636 224 LF 225 (638)
T ss_pred EE
Confidence 85
No 351
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.1e-34 Score=317.32 Aligned_cols=197 Identities=26% Similarity=0.420 Sum_probs=153.3
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 4 l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 4 ISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 789999999963 479999999999999999999999999999999999999999999998631 257
Q ss_pred EEecCCCC-CcccHHHHHhcCCC------------------CCCHHHHHHHH-------------HHhcHHHHHHhCCCC
Q 048556 341 LVSQEPVL-FTSSIKDNINYGKD------------------GASIAEIMAAA-------------ELANAAKFIDSLPQG 388 (478)
Q Consensus 341 ~v~Q~~~l-f~~ti~eNl~~~~~------------------~~~~~~~~~a~-------------~~~~~~~~i~~lp~g 388 (478)
+++|.+.. ..+++.+++..+.. +...+.+.... ....+.+.+..+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 77776532 22466665432110 00001010000 011234455554 4
Q ss_pred ccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEE
Q 048556 389 LDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLI 467 (478)
Q Consensus 389 ~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i 467 (478)
+. .......||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|||+...+.. ||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhcCeE
Confidence 53 245678999999999999999999999999999999999999999999998863 599999999999876 9999
Q ss_pred EEEeCCEEee
Q 048556 468 AVIHQGKLVE 477 (478)
Q Consensus 468 ~vl~~G~i~~ 477 (478)
++|++|+++.
T Consensus 224 ~~L~~G~i~~ 233 (635)
T PRK11147 224 VDLDRGKLVS 233 (635)
T ss_pred EEEECCEEEE
Confidence 9999999863
No 352
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=265.75 Aligned_cols=212 Identities=28% Similarity=0.493 Sum_probs=178.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECC-eecCCCCHHHh-hc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-VNLKEFQLKWI-RG 337 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g-~~~~~~~~~~~-r~ 337 (478)
.++++|||.+|++ -.+|+|+||++.+||.-+|+||||+||||++..|.|-.+|+.|+++++| .|+..++...+ |.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4789999999975 3699999999999999999999999999999999999999999999999 99999997776 45
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCC-CC----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGKDG-AS----IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~-~~----~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
-||-=+|.|..|.. |++||+.+.... .+ .---....+...+++.+... |+..........||.||||++.|+
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~i--gL~~~~~~~A~~LSHGqKQwLEIG 159 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATI--GLGDERDRLAALLSHGQKQWLEIG 159 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHc--ccchhhhhhhhhhccchhhhhhhh
Confidence 59999999999987 999999876421 11 00001112223334444333 555556666789999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
.-++.+|++|+||||++++..+..+..-+.++++...+++++|-|+|.+++. ||+|-||.+|.+.
T Consensus 160 Mll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL 225 (249)
T COG4674 160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVL 225 (249)
T ss_pred eeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEecccee
Confidence 9999999999999999999999888999999999989999999999999988 9999999999874
No 353
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.2e-35 Score=320.54 Aligned_cols=193 Identities=23% Similarity=0.387 Sum_probs=157.0
Q ss_pred EeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE-----------ECCeecCCCCH
Q 048556 264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-----------IDGVNLKEFQL 332 (478)
Q Consensus 264 ~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~-----------~~g~~~~~~~~ 332 (478)
++++++|.+ ...+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 347899963 236999999 9999999999999999999999999999999999998 99998865432
Q ss_pred HH--hhcceE----EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 048556 333 KW--IRGKIG----LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ 406 (478)
Q Consensus 333 ~~--~r~~i~----~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q 406 (478)
+- .+..++ |++|.|.+|.+|++||+.... ..+++ .+.++.+ |++........+|||||+|
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~~~---------~~~l~~l--~l~~~~~~~~~~LSgGe~q 219 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERGKL---------DEVVERL--GLENILDRDISELSGGELQ 219 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhhh---HHHHH---------HHHHHHc--CCchhhcCChhhCCHHHHH
Confidence 11 112344 555566778889999997421 11222 3344444 5655566778899999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCC
Q 048556 407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQG 473 (478)
Q Consensus 407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G 473 (478)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++++|++|
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999987668899999999999877 9999999773
No 354
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.4e-35 Score=253.57 Aligned_cols=195 Identities=28% Similarity=0.412 Sum_probs=162.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC---ccEEEECCeecCCCCHHHhh
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVNLKEFQLKWIR 336 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~r 336 (478)
-+.++||+.+.++ .-.|.|+||+|.+||++.+.||||||||||+.-+.|.+.++ +|++.+|++++..++.. +
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 3678999987764 46899999999999999999999999999999999999874 79999999999888755 6
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCC-CHH----HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556 337 GKIGLVSQEPVLFTS-SIKDNINYGKDGA-SIA----EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI 410 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~-~~~----~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l 410 (478)
+++|+++||++||+. ++-+|+.|.-|.. .-+ ....|++.++ ++......+.+||||||.|+++
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~g-----------L~g~f~~dP~tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSG-----------LDGAFHQDPATLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhc-----------cchhhhcChhhcCcchHHHHHH
Confidence 899999999999997 9999999987642 212 2233444444 4444445567899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-c-CCCeEEEEecCchhhhhcCEEEEE
Q 048556 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKI-M-INRTTVIVAHRLSTVRNADLIAVI 470 (478)
Q Consensus 411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~-~-~~~t~i~itH~~~~~~~~d~i~vl 470 (478)
-|+|+..|+.++||||+|.||..-+.++.+-.... . .+..++.|||+...+....|++-|
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 99999999999999999999999888887776432 2 467899999999998877777765
No 355
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-34 Score=265.78 Aligned_cols=207 Identities=29% Similarity=0.472 Sum_probs=175.4
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc--CCCCccEEEECCeecCCCCHHHh-hc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGVNLKEFQLKWI-RG 337 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~ 337 (478)
++++|++.+-.++ +++|+++|++|++||+.+|.||||||||||.+.|+|. |++++|+|.++|+|+.++++++. |.
T Consensus 4 L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 4 LEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 7899999988642 4799999999999999999999999999999999998 58899999999999999999886 44
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGKDG---------ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR 407 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~---------~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qr 407 (478)
-+...+|.|.=++| |+.+-+..+... ...+++.++++..++++.. ++..++ ..||||||.|
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN---~GFSGGEkKR 152 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVN---EGFSGGEKKR 152 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccC---CCcCcchHHH
Confidence 49999999999999 999988754211 1123555555555555422 222333 5699999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhc--CEEEEEeCCEEeeC
Q 048556 408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNA--DLIAVIHQGKLVEK 478 (478)
Q Consensus 408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~--d~i~vl~~G~i~~~ 478 (478)
..|+.+++-+|++.|||||-|+||.++-+.|.+.+.+++ +++++++|||.-..+.+. |++.||-+|+|+.+
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~s 226 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKS 226 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999886 578999999999998885 99999999999853
No 356
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=8.4e-35 Score=286.41 Aligned_cols=211 Identities=30% Similarity=0.479 Sum_probs=171.1
Q ss_pred cEEEEeEEEECCC-CCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----CccEEEECCeecCCCCHH
Q 048556 260 DIELKDIYFSYPS-RPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGVNLKEFQLK 333 (478)
Q Consensus 260 ~i~~~~v~~~y~~-~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----~~G~i~~~g~~~~~~~~~ 333 (478)
-++++|++.+|.. +...++++++||+|++||++|+||+||||||-..+.++|+++. .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 3789999888852 2235799999999999999999999999999999999999854 469999999999999988
Q ss_pred Hhhc----ceEEEecCCCCC--cc-cH----HHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCC
Q 048556 334 WIRG----KIGLVSQEPVLF--TS-SI----KDNINYGKDG---ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQ 399 (478)
Q Consensus 334 ~~r~----~i~~v~Q~~~lf--~~-ti----~eNl~~~~~~---~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~ 399 (478)
++|+ +|++|+|+|.-- +- || .|-|.+...- +-.++..+.++.+|+.+ =...+...+.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~--------p~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPE--------PEKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc--------hhhhhhhCCcc
Confidence 8764 699999999632 21 44 4444443311 11234444444444432 12355677899
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556 400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
||||||||+-||.||+.+|++||-||||.+||...+.+|.+.|+++.+ +..+++|||++..+++ ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999998853 6799999999999988 9999999999999
Q ss_pred eC
Q 048556 477 EK 478 (478)
Q Consensus 477 ~~ 478 (478)
|.
T Consensus 238 E~ 239 (534)
T COG4172 238 ET 239 (534)
T ss_pred ec
Confidence 84
No 357
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.1e-35 Score=340.51 Aligned_cols=197 Identities=24% Similarity=0.345 Sum_probs=159.8
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC----CCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY----DPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS 351 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~----~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 351 (478)
+++|+|+|+++++||+++|+||||||||||+|+|+|.. .|.+|+|.+||.++.+.. ..+|+.++||+|++.+|+.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46899999999999999999999999999999999986 578999999999886543 3457789999999988876
Q ss_pred -cHHHHHhcCC----C-----CCCHHHHHHHHHHhcHHHHHHh--CCCCccccccC-CCCCCChHHHHHHHHHHHHcCCC
Q 048556 352 -SIKDNINYGK----D-----GASIAEIMAAAELANAAKFIDS--LPQGLDTMVGE-HGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 352 -ti~eNl~~~~----~-----~~~~~~~~~a~~~~~~~~~i~~--lp~g~~t~~~~-~g~~LSgGq~Qrl~lARall~~~ 418 (478)
|++||+.++. | ..+.++..+.. .++.++. +.+-.||.+|+ ....||||||||++|||||+.+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p 228 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHI----ADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGA 228 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH----HHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCC
Confidence 9999998752 1 11222221110 1112332 33335677764 56789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCc-hhh-hhcCEEEEEeCCEEee
Q 048556 419 RILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRL-STV-RNADLIAVIHQGKLVE 477 (478)
Q Consensus 419 ~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~-~~~-~~~d~i~vl~~G~i~~ 477 (478)
++++|||||++||+.++..+.+.|+++.+ ++|+|+++|++ +.+ +.+|++++|++|+++.
T Consensus 229 ~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~ 291 (1394)
T TIGR00956 229 KIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIY 291 (1394)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEE
Confidence 99999999999999999999999999853 68999999997 344 4599999999999874
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=2.6e-34 Score=303.24 Aligned_cols=198 Identities=32% Similarity=0.481 Sum_probs=162.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.|+++|++++|++ +++++|+||++.+|+++||||+||||||||+|+|+|...|++|+|...+. -++
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 4889999999953 58999999999999999999999999999999999999999999987432 269
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCH--HHHHHHHH-------------------------HhcHHHHHHhCCCCccc
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDGASI--AEIMAAAE-------------------------LANAAKFIDSLPQGLDT 391 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~~~--~~~~~a~~-------------------------~~~~~~~i~~lp~g~~t 391 (478)
+|++|++.+.++ |+++.+..+...... .+...+.. .+.+...+..+ |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999976 999999877532110 11111110 02223334434 4444
Q ss_pred cccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEE
Q 048556 392 MVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVI 470 (478)
Q Consensus 392 ~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl 470 (478)
. ...-.+||||||.|++|||||+.+|++|+|||||++||.++...+.+-|.+. ++ |+|+|||+-+++.. |++|+-+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 4 5566899999999999999999999999999999999999999999999874 44 99999999999998 9999999
Q ss_pred eCCEEe
Q 048556 471 HQGKLV 476 (478)
Q Consensus 471 ~~G~i~ 476 (478)
+.|++.
T Consensus 224 d~g~l~ 229 (530)
T COG0488 224 DRGKLT 229 (530)
T ss_pred cCCcee
Confidence 999874
No 359
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.3e-34 Score=257.55 Aligned_cols=206 Identities=24% Similarity=0.444 Sum_probs=165.4
Q ss_pred EEEEeEEEECCCC------CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH
Q 048556 261 IELKDIYFSYPSR------PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW 334 (478)
Q Consensus 261 i~~~~v~~~y~~~------~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~ 334 (478)
++++|+|+++..+ ....+.+.+||+.++|+.+||+|.||||||||+|+|+|+++|++|+|++||+++.--|...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 5677777665422 1235899999999999999999999999999999999999999999999999998777777
Q ss_pred hhcceEEEecCCCC-CcccHHHHHh--------cC---CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 335 IRGKIGLVSQEPVL-FTSSIKDNIN--------YG---KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 335 ~r~~i~~v~Q~~~l-f~~ti~eNl~--------~~---~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
..++|-+++|||.- |+ -|-|+. +. .|....+++.+.++.+|+ +|+--+ -....||-
T Consensus 85 R~k~IRMiFQDpnts~N--PRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL------~Pdhan----~~~~~la~ 152 (267)
T COG4167 85 RSKRIRMIFQDPNTSLN--PRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------LPDHAN----YYPHMLAP 152 (267)
T ss_pred hhhheeeeecCCccccC--hhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhcc------Cccccc----cchhhcCc
Confidence 77889999999962 33 122221 11 112233455555666554 343221 24678999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~ 478 (478)
|||||+||||||+-+|+|+|-||+-.+||..-+.++.+.+.++. .+..-|+|+.++-.+++ +|+|+||++|+++|.
T Consensus 153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~ 231 (267)
T COG4167 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVER 231 (267)
T ss_pred hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeec
Confidence 99999999999999999999999999999999999999987764 46789999999999999 999999999999984
No 360
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.9e-34 Score=334.60 Aligned_cols=199 Identities=26% Similarity=0.397 Sum_probs=160.3
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC---ccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS- 351 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~- 351 (478)
+++|+|+|+.|+|||+++|+||||||||||+|+|+|.++|+ +|+|.+||+++.+.. .|+.++||+|++.+|+.
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 46899999999999999999999999999999999999998 999999999986654 36789999999888875
Q ss_pred cHHHHHhcCCC----C--------CCHHH----------H---HHHHHHh------cHHHHHHhC--CCCccccccC-CC
Q 048556 352 SIKDNINYGKD----G--------ASIAE----------I---MAAAELA------NAAKFIDSL--PQGLDTMVGE-HG 397 (478)
Q Consensus 352 ti~eNl~~~~~----~--------~~~~~----------~---~~a~~~~------~~~~~i~~l--p~g~~t~~~~-~g 397 (478)
|++||+.++.. . .+.++ + +++.... ..++.++.+ .+-.||.+|+ ..
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987521 0 01111 1 1111111 123344443 3334677764 45
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCch--hhhhcCEEEEEeCC
Q 048556 398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLS--TVRNADLIAVIHQG 473 (478)
Q Consensus 398 ~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~i~vl~~G 473 (478)
..||||||||++|||+++.+|++++|||||++||+.+...+.+.|+++. .++|+|+++|++. ..+.+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 7899999999999999999999999999999999999999999999985 3789999999973 45569999999999
Q ss_pred EEee
Q 048556 474 KLVE 477 (478)
Q Consensus 474 ~i~~ 477 (478)
+++.
T Consensus 415 ~ivy 418 (1470)
T PLN03140 415 QIVY 418 (1470)
T ss_pred eEEE
Confidence 9974
No 361
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.4e-34 Score=313.05 Aligned_cols=210 Identities=24% Similarity=0.318 Sum_probs=157.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC---CCCccEEEECCeecCCCC--H--
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLIDGVNLKEFQ--L-- 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~i~~~g~~~~~~~--~-- 332 (478)
.|+++|++|+|++ .++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+.++++...+ .
T Consensus 177 ~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 177 DIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 5999999999963 46999999999999999999999999999999999864 578899987555432111 1
Q ss_pred ----------HHhhcceEEEecCCCCCcccHHHHHhcCCC-CCCH----HHHHHHHHHh----------cHHHHHHhCCC
Q 048556 333 ----------KWIRGKIGLVSQEPVLFTSSIKDNINYGKD-GASI----AEIMAAAELA----------NAAKFIDSLPQ 387 (478)
Q Consensus 333 ----------~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~-~~~~----~~~~~a~~~~----------~~~~~i~~lp~ 387 (478)
..+++.+++++|++.+...+..+|...... .... +++.++.+.. .+.+.+..+
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l-- 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL-- 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC--
Confidence 112455888999876544444444422110 0111 1222222211 122344444
Q ss_pred Ccc-ccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cC
Q 048556 388 GLD-TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-AD 465 (478)
Q Consensus 388 g~~-t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d 465 (478)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|||++..+.. ||
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCC
Confidence 553 2344556899999999999999999999999999999999999999999999886 5799999999999877 99
Q ss_pred EEEEEeCCEEe
Q 048556 466 LIAVIHQGKLV 476 (478)
Q Consensus 466 ~i~vl~~G~i~ 476 (478)
+|++|++|+++
T Consensus 410 ~i~~l~~g~i~ 420 (718)
T PLN03073 410 DILHLHGQKLV 420 (718)
T ss_pred EEEEEECCEEE
Confidence 99999999985
No 362
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=3e-34 Score=253.38 Aligned_cols=136 Identities=38% Similarity=0.692 Sum_probs=121.4
Q ss_pred cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHH
Q 048556 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNI 357 (478)
Q Consensus 279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl 357 (478)
|+|+||+|++|++++|+||||||||||+++|+|.++|++|+|.+||.++...+...+++.++|++|++.+|++ |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6899999999999999999999999999999999999999999999999998889999999999999999987 79999
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 048556 358 NYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428 (478)
Q Consensus 358 ~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts 428 (478)
..++++.++++..++.+ ..++.++.+...||||||||++||||++++|+++||||||+
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23345555555554433 34678888889999999999999999999999999999996
No 363
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-33 Score=304.57 Aligned_cols=211 Identities=28% Similarity=0.458 Sum_probs=175.9
Q ss_pred ccEEEEeEEEECCCCC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC---CccEEEECCeecCCCCHH
Q 048556 259 GDIELKDIYFSYPSRP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP---QAGEVLIDGVNLKEFQLK 333 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~i~~~g~~~~~~~~~ 333 (478)
..++++|+++..++.+ .+.+|+|||.+++|||+.||.||||||||||+++|+|..+. .+|+|++||++ .+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---Cchh
Confidence 4689999999886542 36899999999999999999999999999999999999974 78999999954 4556
Q ss_pred HhhcceEEEecCCCCCcc-cHHHHHhcCC----CC-CCHHHHHHHHHHhcHHHHHHhCCCC--ccccccC-CCCCCChHH
Q 048556 334 WIRGKIGLVSQEPVLFTS-SIKDNINYGK----DG-ASIAEIMAAAELANAAKFIDSLPQG--LDTMVGE-HGTQLSGGQ 404 (478)
Q Consensus 334 ~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~----~~-~~~~~~~~a~~~~~~~~~i~~lp~g--~~t~~~~-~g~~LSgGq 404 (478)
.+++..|||+||..+++. ||+|++.+.. |. .+.++ +...+++.+.+|..- -||.+|. +...+||||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~-----k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEE-----KRERVEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHcCChhhccceecCCCCCccccch
Confidence 789999999999999987 9999998753 22 12222 223345566666322 3577763 347899999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchh--hhhcCEEEEEeCCEEee
Q 048556 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLST--VRNADLIAVIHQGKLVE 477 (478)
Q Consensus 405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~vl~~G~i~~ 477 (478)
|+|++||.-++.||+||+||||||+||..+...+.+.|+++. ++||||++=|+++. ....|++++|.+|+++-
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy 251 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVY 251 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEE
Confidence 999999999999999999999999999999999999999986 58999999999974 56689999999998863
No 364
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.4e-34 Score=267.67 Aligned_cols=193 Identities=26% Similarity=0.413 Sum_probs=152.7
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEe-cCCCCCcc-cHH
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVS-QEPVLFTS-SIK 354 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~lf~~-ti~ 354 (478)
++.+||||+|++|++++++|||||||||++|+|.|+..|++|.|.++|.+..+-..+.+ +++++|. |...+.-+ .+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~-~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYL-RSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHH-HHHHHHhhhhheeeeechhh
Confidence 68999999999999999999999999999999999999999999999998766444444 4455443 43333211 233
Q ss_pred HHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCH
Q 048556 355 DNINYGK--DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 432 (478)
Q Consensus 355 eNl~~~~--~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~ 432 (478)
|-+.... -+..+++..+ .+..+.+-| +++..+......||-|||.|..||.||+++|+||+|||||-+||.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~-----r~~~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAE-----RLDFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred hhHHHHHHHHhCCHHHHHH-----HHHHHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 3333211 1233333322 223344444 678888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 433 ESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 433 ~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
.++..|.+.+++.. .++||++.||.++.+.. ||||+.++.|+++.
T Consensus 190 ~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~ 237 (325)
T COG4586 190 NAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVF 237 (325)
T ss_pred hHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEee
Confidence 99999999998875 47899999999998877 99999999999874
No 365
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-33 Score=248.81 Aligned_cols=188 Identities=22% Similarity=0.386 Sum_probs=159.6
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++.+|++..-. +...+.++||++.+||.+-|.||||||||||+|+|+|+.+|++|+|.++|.++..... ..++.+.
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-SYHQALL 78 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-hHHHHHH
Confidence 34566665432 4579999999999999999999999999999999999999999999999999877643 3477899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDG---ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~---~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
|+...+-+=+. |+.||+.|.... .+.+.+++|++.+++..+ ..+| ..+||.||++|+||||-.+.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp----------~~~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP----------VGQLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc----------hhhcchhHHHHHHHHHHHcC
Confidence 99999988765 999999987532 456889999999988753 2333 45799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN 463 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ 463 (478)
.+|++||||||++||.+.+..+-..+.... .+..||..||....+..
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 999999999999999999999999987664 57799999999876643
No 366
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-29 Score=255.74 Aligned_cols=443 Identities=17% Similarity=0.216 Sum_probs=292.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCh---hhhhccCChhH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 6 VTGERQAARIRGLYLKTLLRQDI---GFFDKETHSGE---IIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSK 79 (478)
Q Consensus 6 ~~~~~~~~~lr~~l~~~l~~~~~---~~~~~~~~sG~---l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (478)
++-.+..-.+|.++.+|+.++=+ +||.-.+-.|. .=+++++|+....+...+....+...++-++.+.+.+.-.
T Consensus 179 yle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s 258 (728)
T KOG0064|consen 179 YLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDS 258 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 34445555666666666654321 33332101122 2356889998888888888777777766665544444322
Q ss_pred hHHHH--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHH
Q 048556 80 GWLLT--LVMLSS--IPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYK 155 (478)
Q Consensus 80 ~~~l~--li~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 155 (478)
+...+ .+.++. .-+-..+.+.+.++..++..+.....+.+...-...+.+-++|-.|+-.+.+.+++++..+....
T Consensus 259 ~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~ 338 (728)
T KOG0064|consen 259 ATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVE 338 (728)
T ss_pred hccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 22111 111111 11122345666778888888888888888888899999999999999999999999998888766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hCCC--C-HH-----HHHHHHHHHHHHHHHHH
Q 048556 156 SGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMIL------------EKGY--K-GG-----DVINVIFCVMIGSMSLG 215 (478)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~------------~g~l--s-~G-----~l~~~~~~~~~~~~~l~ 215 (478)
.-....+...++..+-+|+.- .+|-|.-+|+ .+.. + .| .+...=-+.......+.
T Consensus 339 qm~li~k~r~~YiMleqF~mK-----YvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAie 413 (728)
T KOG0064|consen 339 QMNLIFKVRLWYIMLEQFVMK-----YTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIE 413 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 544444433333333333221 2233322221 1110 0 01 11111112222333556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc---C----------CCcccCC-----CCCCccC-----CCCccEEEEeEEEECCC
Q 048556 216 QASPCISAFAAGQAAAYKLFEAIER---K----------PLIDAYD-----SNGVKLD-----DIRGDIELKDIYFSYPS 272 (478)
Q Consensus 216 ~l~~~~~~~~~~~~a~~ri~~~l~~---~----------~~~~~~~-----~~~~~~~-----~~~~~i~~~~v~~~y~~ 272 (478)
.+...+-.+.+......|+++.++. . ++..+.. .++.+.+ .....|.++||-.--|.
T Consensus 414 RlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~ 493 (728)
T KOG0064|consen 414 RLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPA 493 (728)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccC
Confidence 6666666666666666777655421 0 0100000 0000000 01134889998776664
Q ss_pred CCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCccc
Q 048556 273 RPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSS 352 (478)
Q Consensus 273 ~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~t 352 (478)
...+...++|+|++|-.+.|+||||||||+|+++|.|+++...|...+- .+.+|-|+||.|+.--||
T Consensus 494 --~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P-----------~~~~mFYIPQRPYms~gt 560 (728)
T KOG0064|consen 494 --GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP-----------RPNNIFYIPQRPYMSGGT 560 (728)
T ss_pred --cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC-----------CCcceEeccCCCccCcCc
Confidence 2468899999999999999999999999999999999999988877541 134699999999988889
Q ss_pred HHHHHhcCC-------CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeC
Q 048556 353 IKDNINYGK-------DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 425 (478)
Q Consensus 353 i~eNl~~~~-------~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDE 425 (478)
+||-+.+++ ...+|.++++.++.+.++..++ -..|.|.. .+--.-||||||||++.||.++++|+..+|||
T Consensus 561 lRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~q-r~~g~da~-~dWkd~LsgGekQR~~mARm~yHrPkyalLDE 638 (728)
T KOG0064|consen 561 LRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQ-REGGWDAV-RDWKDVLSGGEKQRMGMARMFYHRPKYALLDE 638 (728)
T ss_pred ccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHH-hccChhhh-ccHHhhccchHHHHHHHHHHHhcCcchhhhhh
Confidence 999999875 3567889999999999875544 44565543 34456799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEE
Q 048556 426 ATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVI 470 (478)
Q Consensus 426 pts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl 470 (478)
+|||+.++-|..++++.++. +-+.|-||||++..+.....+-.
T Consensus 639 cTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 639 CTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred hhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 99999999999999999874 68999999999987765444433
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=5.3e-32 Score=259.60 Aligned_cols=191 Identities=24% Similarity=0.328 Sum_probs=128.8
Q ss_pred CCcccccceeeecCCCEEEEEcCCCCChHHHH-HHHhccCCCCccEEEEC-C------eec---CCCCHHHhh-cceEEE
Q 048556 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVI-SLIERFYDPQAGEVLID-G------VNL---KEFQLKWIR-GKIGLV 342 (478)
Q Consensus 275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~-~ll~g~~~~~~G~i~~~-g------~~~---~~~~~~~~r-~~i~~v 342 (478)
+.++|+|+||++++||++||+||||||||||+ ..+. .+|++.+. + ... ...+....+ ...++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 35799999999999999999999999999996 3332 13433221 0 000 000001111 123444
Q ss_pred ecCCCCC-c-c-c---HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHHc
Q 048556 343 SQEPVLF-T-S-S---IKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 343 ~Q~~~lf-~-~-t---i~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~lARall 415 (478)
.|++... + . + +.+...+.......++..+ . .+.++.+ |+.. .......+|||||+||++||||++
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~---~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~ 153 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRE---R---LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIG 153 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHH---H---HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHH
Confidence 4444311 1 1 2 2222211110000111111 1 2344444 5554 467788999999999999999999
Q ss_pred CCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEE------eCCEEeeC
Q 048556 416 KDP--RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVI------HQGKLVEK 478 (478)
Q Consensus 416 ~~~--~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl------~~G~i~~~ 478 (478)
.+| +++||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.++.||++++| ++|+|+++
T Consensus 154 ~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 154 SGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred hCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEec
Confidence 998 5999999999999999999999998874 478999999999998889999999 99999975
No 368
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=3.4e-32 Score=240.47 Aligned_cols=208 Identities=27% Similarity=0.417 Sum_probs=165.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECC-----eecCCCCHHH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-----VNLKEFQLKW 334 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g-----~~~~~~~~~~ 334 (478)
-++++++|+.|.+ ....+|+||++.|||..+|||+||||||||++.|++-..|++|+|.+.- .++..++..+
T Consensus 6 LL~V~~lsk~Yg~---~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGP---GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCC---CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 4789999999964 3579999999999999999999999999999999999999999999865 3455556555
Q ss_pred hh----cceEEEecCCC--CC----c-ccHHHHHh-cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 335 IR----GKIGLVSQEPV--LF----T-SSIKDNIN-YGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 335 ~r----~~i~~v~Q~~~--lf----~-~ti~eNl~-~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
.| ...++|.|+|. |= . +.|-|-+. .|.. -+..+.. ...+|++..+-. .+.+.+.+..+||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R--HYG~iR~-----~a~~WL~~VEI~-~~RiDD~PrtFSG 154 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR--HYGNIRA-----EAQDWLEEVEID-LDRIDDLPRTFSG 154 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh--hhhhHHH-----HHHHHHHhcccC-cccccCcccccch
Confidence 43 44799999984 11 1 13333221 1111 1222222 234677765432 2466788999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~ 478 (478)
|++||+.|||-|+..|+++++||||.+||..-++++.+.++.+-. +-.+++|||++..++- +||.+||++|+++|+
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 999999999999999999999999999999999999999988753 5799999999999887 999999999999984
No 369
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=2.1e-31 Score=249.33 Aligned_cols=180 Identities=28% Similarity=0.416 Sum_probs=145.0
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD 355 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 355 (478)
..+|+||||++++||.+||+|+||||||||+|+|+|.|+|++|+|.++|.-..-++. ..|+-| +-|-||
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~l-----g~Gf~p------elTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIEL-----GAGFDP------ELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhc-----ccCCCc------ccchHH
Confidence 468999999999999999999999999999999999999999999998864322210 122211 238999
Q ss_pred HHhcCC--CCCCHHHH----HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 048556 356 NINYGK--DGASIAEI----MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429 (478)
Q Consensus 356 Nl~~~~--~~~~~~~~----~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~ 429 (478)
|+.+-. ...+.+|+ .+..+-+.+.+|+ .....+.|-|++-||++|-|.-.+|++||+||..+.
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieFaELG~fi-----------~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI-----------DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh-----------hCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 997632 22333333 3444445555554 344678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHh-cCCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 430 LDAESERVVQEALDKI-MINRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 430 LD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
-|+.=.++=.+.+.+. .+++|+|+|||+++.++. |||+++|++|++..
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~ 227 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRM 227 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEE
Confidence 9999888888888887 567999999999999988 99999999999864
No 370
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.98 E-value=5e-31 Score=278.40 Aligned_cols=191 Identities=28% Similarity=0.386 Sum_probs=161.1
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
.-++++|+++.|++. +++++++||.|++|+++||+||||+|||||+|+|+|...|.+|+|.+.-. -+
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VK 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eE
Confidence 458999999999743 58999999999999999999999999999999999999999999987431 36
Q ss_pred eEEEecCC-CCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 339 IGLVSQEP-VLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 339 i~~v~Q~~-~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+||.+|+. .+++. |+.|++.-..|+..+.++...+..-++.. .........||||||-|+.||+.++.
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~----------~~~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTG----------EDQEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCCh----------HHHhCchhhcCHhHHHHHHHHHHhcc
Confidence 99999988 45544 99999988776655555555554433321 22245567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i 475 (478)
+|.+|||||||++||.++...+.++|... +.|||+|||+..+++. |++|+++++ ++
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~ 513 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KV 513 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ce
Confidence 99999999999999999999999999885 3599999999999998 999999987 44
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=2.4e-31 Score=249.55 Aligned_cols=164 Identities=24% Similarity=0.346 Sum_probs=131.4
Q ss_pred ccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC---------ccEEEECCeecCCCCHHHhhcceEEEecCCCCCc
Q 048556 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ---------AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT 350 (478)
Q Consensus 280 ~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---------~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~ 350 (478)
+++++++++| +++|+||||||||||+++|+|+..|. .|++.++|.+.... ..++++++++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 5799999999 99999999999999999999998665 34677777765432 2357899999999877
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCC
Q 048556 351 SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEA 426 (478)
Q Consensus 351 ~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall----~~~~ililDEp 426 (478)
++. ...+++.++ ++. + + ........||||||||++|||+++ .+|++++||||
T Consensus 89 --------~~~--~~~~~~~~~---------l~~-~-~---~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 --------YSI--ISQGDVSEI---------IEA-P-G---KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred --------eeE--EehhhHHHH---------HhC-C-C---ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 211 012233333 222 2 2 223456789999999999999986 56799999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeC
Q 048556 427 TSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQ 472 (478)
Q Consensus 427 ts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~ 472 (478)
|++||+.+...+.+.|+++.++.|+|+|||+++.++.||+++.+..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999998777899999999999988999999854
No 372
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.3e-30 Score=253.40 Aligned_cols=191 Identities=25% Similarity=0.406 Sum_probs=138.9
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHh-----c-cC----CCCcc-----------EEEECCeecCCCCH---
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE-----R-FY----DPQAG-----------EVLIDGVNLKEFQL--- 332 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~-----g-~~----~~~~G-----------~i~~~g~~~~~~~~--- 332 (478)
.-|+|+|++|+.|..++|+|+||||||||++-+. + +. .|..+ -|.+|..++..-+.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998552 1 11 12222 35566665533110
Q ss_pred -------HHhhc----------------ceEEEecCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCC
Q 048556 333 -------KWIRG----------------KIGLVSQEPVLF-TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQG 388 (478)
Q Consensus 333 -------~~~r~----------------~i~~v~Q~~~lf-~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g 388 (478)
+++|+ .+.|.+++...+ .-|+.||+.|..... ++. ...+.++.+ |
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---~~~------~~~~~L~~v--g 157 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---KIA------RKLQTLCDV--G 157 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---hHH------HHHHHHHHc--C
Confidence 11111 133444444333 336777766543211 111 122344444 6
Q ss_pred ccc-cccCCCCCCChHHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh
Q 048556 389 LDT-MVGEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN 463 (478)
Q Consensus 389 ~~t-~~~~~g~~LSgGq~Qrl~lARall~~---~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ 463 (478)
++. .+++...+|||||+||++|||+|+++ |+++||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.++.
T Consensus 158 L~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~ 237 (261)
T cd03271 158 LGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC 237 (261)
T ss_pred CchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 665 47888999999999999999999996 79999999999999999999999998875 47899999999999999
Q ss_pred cCEEEEE------eCCEEeeC
Q 048556 464 ADLIAVI------HQGKLVEK 478 (478)
Q Consensus 464 ~d~i~vl------~~G~i~~~ 478 (478)
||++++| ++|+++++
T Consensus 238 aD~ii~Lgp~~g~~~G~iv~~ 258 (261)
T cd03271 238 ADWIIDLGPEGGDGGGQVVAS 258 (261)
T ss_pred CCEEEEecCCcCCCCCEEEEe
Confidence 9999999 89999863
No 373
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.97 E-value=2.8e-30 Score=290.63 Aligned_cols=205 Identities=22% Similarity=0.463 Sum_probs=174.9
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC-CHHHhhc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF-QLKWIRG 337 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~-~~~~~r~ 337 (478)
..+..+|+++.|+... .+.+++|+.+++||+.|+.|||||||||+++++.|..+|++|++.++|.++..- +.++.++
T Consensus 563 ~~~~~~~L~k~y~~~~--~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD--GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchh--hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 3588999999997542 299999999999999999999999999999999999999999999999999764 4456899
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCC--CCCCHHH----HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGK--DGASIAE----IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI 410 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~--~~~~~~~----~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l 410 (478)
++||+||+..+++. |.||++.+.. ......+ +...++..++.+. .......+|||+|+||++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~-----------~~~~~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPY-----------ANKQVRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhh-----------hccchhhCCCcchhhHHH
Confidence 99999999999987 9999998753 1222222 3444444444332 233367899999999999
Q ss_pred HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC-CeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556 411 ARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN-RTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 411 ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~-~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
|-|++.+|++++|||||+|+||.+++.+++.+++..++ +.+|++||.+++.+. |||+.+|.+|++.
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ 777 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLR 777 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeE
Confidence 99999999999999999999999999999999998764 499999999999998 9999999999975
No 374
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-30 Score=229.15 Aligned_cols=202 Identities=28% Similarity=0.384 Sum_probs=148.5
Q ss_pred cEEEEeEEEECCC--CC--CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCe----ecCCCC
Q 048556 260 DIELKDIYFSYPS--RP--GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV----NLKEFQ 331 (478)
Q Consensus 260 ~i~~~~v~~~y~~--~~--~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~----~~~~~~ 331 (478)
.+.++|++++|.- +. .-|+++|+||+++.||++++=||||||||||++.|.+-|.|++|+|.+... |+-...
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 3778888776631 11 137999999999999999999999999999999999999999999998543 333333
Q ss_pred HH----HhhcceEEEecCCCCCcc-----cHHHHHh-cCCCCCCHHHHHHHHHHhcHHHHHH--hCCCCccccccCCCCC
Q 048556 332 LK----WIRGKIGLVSQEPVLFTS-----SIKDNIN-YGKDGASIAEIMAAAELANAAKFID--SLPQGLDTMVGEHGTQ 399 (478)
Q Consensus 332 ~~----~~r~~i~~v~Q~~~lf~~-----ti~eNl~-~~~~~~~~~~~~~a~~~~~~~~~i~--~lp~g~~t~~~~~g~~ 399 (478)
+. -.|+.||||+|--...+- -+.|-+. .|-+ .+... .+ ..+.+. .+|+.+... .+.+
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~---~~~a~--~~---a~~Ll~rLnlperLW~L---aPaT 152 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP---REVAR--AK---AADLLTRLNLPERLWSL---APAT 152 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC---HHHHH--HH---HHHHHHHcCCCHHHhcC---CCcc
Confidence 32 235669999995333321 2233322 2222 11111 11 122232 345544433 4689
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeC
Q 048556 400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQ 472 (478)
Q Consensus 400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~ 472 (478)
+||||+||+-|||.++-|-+||+|||||++||..+++.+.+.|.+.+ ++..++=|=|+-+.-+. |||++-|..
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999999999999999999999999999999998875 57888999999877666 899988754
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=4.1e-30 Score=244.43 Aligned_cols=192 Identities=20% Similarity=0.216 Sum_probs=141.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeec-CCCEEEEEcCCCCChHHHHHHHhc-cCCCCccEEEECCeecCCCCHHHhhc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIP-SGTTAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGVNLKEFQLKWIRG 337 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~-~G~~~~ivG~sGsGKSTL~~ll~g-~~~~~~G~i~~~g~~~~~~~~~~~r~ 337 (478)
.|+++|+. +|.+. ++++|+.. +|++++|+||||||||||+++|++ +|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58899987 77532 46777654 599999999999999999999994 666655655543 1112233334466
Q ss_pred ceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCC-ccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 338 KIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQG-LDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g-~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
.|++++|++.-.-. +..++ ..+.++..+... ++.| +++.+...+.+|||||+||++||||++.
T Consensus 77 ~v~~~f~~~~~~~~----~~r~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLGGKKYR----VERSR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEECCeEEE----EEEec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHh
Confidence 79999998743221 22222 233333332210 1222 5667778889999999999999999974
Q ss_pred ----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556 417 ----------DPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475 (478)
Q Consensus 417 ----------~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i 475 (478)
+|+++||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+++++++|..
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6789999999999999999999999988864 7899999999998876 899999999854
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=5.5e-30 Score=248.30 Aligned_cols=192 Identities=24% Similarity=0.346 Sum_probs=134.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHh----------------ccCCCCcc-----
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE----------------RFYDPQAG----- 318 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~----------------g~~~~~~G----- 318 (478)
.|+++|. ++|.+ ..++.+++ |++++|+||||||||||+++|+ +++.+.+|
T Consensus 3 ~i~~~nf-ksy~~---~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYKD---QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCccc---CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3666664 23542 35777876 8999999999999999999998 44455555
Q ss_pred ---EEEECCeecC-CC--CHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHH--HhCCCC--
Q 048556 319 ---EVLIDGVNLK-EF--QLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFI--DSLPQG-- 388 (478)
Q Consensus 319 ---~i~~~g~~~~-~~--~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i--~~lp~g-- 388 (478)
+|.+++.+-. .. +...+++.++++||+..++.. ..+.++++..++..++...- ...|+|
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~-----------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i 142 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK-----------NVTKNDVMNLLESAGFSRSNPYYIVPQGKI 142 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe-----------EcCHHHHHHHHHHcCCCCCCCcEEEEcCch
Confidence 5555553211 01 122356678888887766542 22344444444443332100 001111
Q ss_pred -----ccccccCCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 048556 389 -----LDTMVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLS 459 (478)
Q Consensus 389 -----~~t~~~~~g~~LSgGq~Qrl~lARall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 459 (478)
+.....+.+..||||||||++||||++ ++|+++||||||++||+.+.+.+.+.|+++.++.|+|++||+.+
T Consensus 143 ~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~ 222 (243)
T cd03272 143 NSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE 222 (243)
T ss_pred HHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 222345678899999999999999996 46899999999999999999999999998866778899999988
Q ss_pred hhhhcCEEEEEe
Q 048556 460 TVRNADLIAVIH 471 (478)
Q Consensus 460 ~~~~~d~i~vl~ 471 (478)
..+.||++++|+
T Consensus 223 ~~~~~d~i~~l~ 234 (243)
T cd03272 223 LLEVADKFYGVK 234 (243)
T ss_pred HHhhCCEEEEEE
Confidence 777899999984
No 377
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=5.2e-28 Score=249.82 Aligned_cols=209 Identities=23% Similarity=0.364 Sum_probs=172.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 338 (478)
.++++|++.. ..++|+||++++||++||.|--|||+|-|++.|.|..++.+|+|.+||+++.-.++ +.++.-
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4677777542 25789999999999999999999999999999999999999999999999887765 467888
Q ss_pred eEEEecCC---CCCcc-cHHHHHhcCCC-CCCHH-HHHHHHHHhcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHH
Q 048556 339 IGLVSQEP---VLFTS-SIKDNINYGKD-GASIA-EIMAAAELANAAKFIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 339 i~~v~Q~~---~lf~~-ti~eNl~~~~~-~~~~~-~~~~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lA 411 (478)
|+|||.|. .+|.+ +|++|+.+..- ..+.. -+....+..-..+++..| ++.+. ......+||||.+||+.||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l--~Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL--RIKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhc--CcccCCccchhhcCCchhhhhHHHH
Confidence 99999975 36765 99999998721 11100 233444555566777776 33332 2356789999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLIAVIHQGKLVE 477 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~ 477 (478)
|.|..+|++|||||||.|+|.-++++|.+.|+++. +++++|+||-.+.++- .||||+||.+|+++.
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999986 5799999999998866 599999999999974
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=2e-28 Score=238.61 Aligned_cols=180 Identities=18% Similarity=0.241 Sum_probs=134.4
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccCCCC-ccEEEECCe-ecCCCC--HHHhhcceEEEecCCC---------CCc-ccHH
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGV-NLKEFQ--LKWIRGKIGLVSQEPV---------LFT-SSIK 354 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~-~~~~~~--~~~~r~~i~~v~Q~~~---------lf~-~ti~ 354 (478)
..+++|+||||||||||+++|+++..++ .|++...|. ++-... ....+..+.+++|++. +.+ -||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999876 468888776 432111 1122458999999862 222 3788
Q ss_pred HHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCcc---------------ccccCCCCCCChHHHHHHHHH
Q 048556 355 DNINYGKDG--------ASIAEIMAAAELANAAKFIDSLPQGLD---------------TMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 355 eNl~~~~~~--------~~~~~~~~a~~~~~~~~~i~~lp~g~~---------------t~~~~~g~~LSgGq~Qrl~lA 411 (478)
+|+..+... ...+++.+.++.+++. ++... .........||||||||++||
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~------~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la 178 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLN------VNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALS 178 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCC------CCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHH
Confidence 887654321 1223444444444432 00011 334567789999999999999
Q ss_pred HHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEe--CCE
Q 048556 412 RAIL----KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIH--QGK 474 (478)
Q Consensus 412 Rall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~--~G~ 474 (478)
||++ .+|++++|||||++||+.+.+.+.+.|+++.++.|+|+|||+.+.++.||+++-+. +|.
T Consensus 179 ~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~~~~~~ 247 (251)
T cd03273 179 LILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTRFVDGT 247 (251)
T ss_pred HHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEEeeCCE
Confidence 9997 57899999999999999999999999999877889999999998899999998774 553
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.95 E-value=5.7e-28 Score=227.98 Aligned_cols=163 Identities=25% Similarity=0.303 Sum_probs=129.0
Q ss_pred ceeeecCCCEEEEEcCCCCChHHHHHHHh----ccCCCCccEEEECCeecCCCCHHHhhcceEEEecCC-----CCCcc-
Q 048556 282 FSLSIPSGTTAALVGQSGSGKSTVISLIE----RFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEP-----VLFTS- 351 (478)
Q Consensus 282 is~~i~~G~~~~ivG~sGsGKSTL~~ll~----g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-----~lf~~- 351 (478)
.++++.+| +++|+||||||||||+++|. |...|..|.+..+...+.. ...+..+++++|++ .++..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 44567777 99999999999999999994 8888888877522222222 23456899999998 33333
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH------HHHHHHHcCCCCEEEEeC
Q 048556 352 SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR------IAIARAILKDPRILLLDE 425 (478)
Q Consensus 352 ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qr------l~lARall~~~~ililDE 425 (478)
|+.+|+.+.. .+++. +.+ .+....||+||+|| ++||||++.+|++++|||
T Consensus 92 ~~~~~~~~~~----~~~~~---------~~~-----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 92 AILENVIFCH----QGESN---------WPL-----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hHhhceeeec----hHHHH---------HHH-----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 8999997642 22221 111 45568999999996 799999999999999999
Q ss_pred CCCCCCHHHHH-HHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeC
Q 048556 426 ATSALDAESER-VVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQ 472 (478)
Q Consensus 426 pts~LD~~~~~-~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~ 472 (478)
||++||+.+.+ .+.+.|+++.+ ++|+|++||+++.+..||++++|++
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999999 99999988764 6799999999999888999999965
No 380
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.95 E-value=2.3e-28 Score=216.39 Aligned_cols=198 Identities=25% Similarity=0.403 Sum_probs=166.7
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++||+.. .-|-.+|.++..||++-+|||||||||||+-.++|+.+ .+|+|.++|.++..++..++.++-+
T Consensus 4 ~qln~v~~~-------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeecccccc-------ccccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHH
Confidence 456666542 23678999999999999999999999999999999985 6899999999999999999999999
Q ss_pred EEecCC-CCCcccHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC--
Q 048556 341 LVSQEP-VLFTSSIKDNINYGKDGASI-AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK-- 416 (478)
Q Consensus 341 ~v~Q~~-~lf~~ti~eNl~~~~~~~~~-~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~-- 416 (478)
|..|+. -.|...+..-+.+..|+.+. +++.+.+. .+ +++..++.....|||||.||+-+|-..+.
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~---------~L--~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAG---------AL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHh---------hh--cccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 999865 47888999999998886221 12322222 22 67778888889999999999999988775
Q ss_pred ---C--CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCch-hhhhcCEEEEEeCCEEee
Q 048556 417 ---D--PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLS-TVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ---~--~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~~~d~i~vl~~G~i~~ 477 (478)
| .++|++|||.++||...+..+-..|.+++ .+.+||+.+|+++ ++++||++..+..|++..
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~ 212 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLA 212 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEe
Confidence 3 37999999999999999999988888886 5899999999997 799999999999999753
No 381
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=5.5e-28 Score=229.31 Aligned_cols=185 Identities=20% Similarity=0.224 Sum_probs=135.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|.- +|.+ ..+++++++ ++++|+|||||||||++++|. +++|.+... ..++++
T Consensus 5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~~----~~~~~i 61 (212)
T cd03274 5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRASK----MRQKKL 61 (212)
T ss_pred EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHHH----hhhhhH
Confidence 47788875 6743 468999887 899999999999999999997 334443321 123579
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCHHHH-----HHHH-H----HhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDGASIAEI-----MAAA-E----LANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~-----~~a~-~----~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
++++|+..+++. |.++++.+.......+.+ .... + ...+ ..+..+|++.++. ...||+|||||+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~-~~~~~L~~~~~~~----~~~lS~G~~~r~ 136 (212)
T cd03274 62 SDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEV-EQIAQMPKKSWKN----ISNLSGGEKTLS 136 (212)
T ss_pred HHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcE-EEeeccccccccc----hhhcCHHHHHHH
Confidence 999999887765 777777665422111100 0000 0 0011 1233456665554 458999999999
Q ss_pred HHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeC
Q 048556 409 AIARAILK----DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQ 472 (478)
Q Consensus 409 ~lARall~----~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~ 472 (478)
+||||++. +|++++|||||++||+.+.+.+.+.++++.++.|+|++||+.+..+.||++++|..
T Consensus 137 ~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 137 SLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 99999963 57999999999999999999999999998777899999999888888999999953
No 382
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.94 E-value=4.5e-27 Score=239.49 Aligned_cols=193 Identities=27% Similarity=0.380 Sum_probs=156.8
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
..+.++||+|.|+++ ..++++++|-|..++.+|+|||||+|||||+|++.|...|..|.+.-.-+ ..
T Consensus 388 pvi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~ 454 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NK 454 (614)
T ss_pred CeEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------cc
Confidence 458999999999864 36999999999999999999999999999999999999999999864322 23
Q ss_pred eEEEecCC---CCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556 339 IGLVSQEP---VLFTSSIKDNINYGKDG-ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 339 i~~v~Q~~---~lf~~ti~eNl~~~~~~-~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
+++..|+- --++-|.-|++.--.++ -..+++...+...|+....+..| -.+||+|||.|+++||.+
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~ 524 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLA 524 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHH
Confidence 44455533 23556777887644443 44566666677766654433332 368999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
+++|.+|+|||||++||.++-....++|.+. ..+||+|||+...+.+ +++|.+.+||.+.
T Consensus 525 ~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~ 585 (614)
T KOG0927|consen 525 VKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVT 585 (614)
T ss_pred hcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCcee
Confidence 9999999999999999999999999999774 4589999999999988 8999999998764
No 383
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=4.8e-27 Score=260.39 Aligned_cols=192 Identities=27% Similarity=0.433 Sum_probs=159.2
Q ss_pred CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC--CCccEEEECCeecCCCCHHHhhcceEEEecCCC-CCcc
Q 048556 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV-LFTS 351 (478)
Q Consensus 275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf~~ 351 (478)
.+..|+|++=-++||..+|++|+||||||||++.|+|-.. ..+|+|++||.+..+ +.++|.+|||.|++. +=.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 3579999999999999999999999999999999999864 357999999999765 678999999999774 4344
Q ss_pred cHHHHHhcCC-----CCCCHHHH----HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC-CEE
Q 048556 352 SIKDNINYGK-----DGASIAEI----MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP-RIL 421 (478)
Q Consensus 352 ti~eNl~~~~-----~~~~~~~~----~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~-~il 421 (478)
||||-|.+.. ++.+++|- +++.+..++.++ -|..||.-|..||..||+|+.||=-|+.+| .|+
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999998863 23344432 333333333322 367889999999999999999999999999 888
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchh--hhhcCEEEEEeCC-EEe
Q 048556 422 LLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLST--VRNADLIAVIHQG-KLV 476 (478)
Q Consensus 422 ilDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~vl~~G-~i~ 476 (478)
+|||||||||+++...|++.++++. .++||++.=|+++. ++..|+++.|+.| +.|
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtV 1011 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTV 1011 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEE
Confidence 8999999999999999999999986 58999999999984 6779999999875 443
No 384
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.93 E-value=3.8e-26 Score=222.05 Aligned_cols=203 Identities=19% Similarity=0.189 Sum_probs=136.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee-c------CCCCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN-L------KEFQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~-~------~~~~~ 332 (478)
.++++|. .+|.+. .++...++ +++|+||||||||||+.+|.++..+..|++..++.+ + ...+.
T Consensus 3 ~i~l~nf-~~~~~~--------~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~ 72 (247)
T cd03275 3 RLELENF-KSYKGR--------HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDS 72 (247)
T ss_pred EEEEECc-cccCCC--------eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCC
Confidence 4777775 445321 12233334 999999999999999999999998877887654421 1 11111
Q ss_pred HHhhcceEEEecCCC--CCcccHHHHHh---cCCCCCCHHHHHHHHHHhcHHHHHHh--CCCCcccccc---------CC
Q 048556 333 KWIRGKIGLVSQEPV--LFTSSIKDNIN---YGKDGASIAEIMAAAELANAAKFIDS--LPQGLDTMVG---------EH 396 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~--lf~~ti~eNl~---~~~~~~~~~~~~~a~~~~~~~~~i~~--lp~g~~t~~~---------~~ 396 (478)
....-.+.|..|++. ++..++++.-. +.....+.+++.+.++..++..+... .|+|--+.+. ..
T Consensus 73 ~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~ 152 (247)
T cd03275 73 NSAYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRD 152 (247)
T ss_pred ceEEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhh
Confidence 233334555555532 33444444321 11223456666666676665311000 1222212221 23
Q ss_pred CCCCChHHHHHHHHHHHHcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhhcCEEEEEe
Q 048556 397 GTQLSGGQKQRIAIARAILKD----PRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRNADLIAVIH 471 (478)
Q Consensus 397 g~~LSgGq~Qrl~lARall~~----~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~vl~ 471 (478)
..+||||||||++||||++.+ |+++||||||++||+.+...+.+.|+++.+ +.|+|+|||+.+.++.||++++|.
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 378999999999999999864 899999999999999999999999998864 789999999999998899999985
Q ss_pred C
Q 048556 472 Q 472 (478)
Q Consensus 472 ~ 472 (478)
.
T Consensus 233 ~ 233 (247)
T cd03275 233 R 233 (247)
T ss_pred e
Confidence 4
No 385
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=2.3e-25 Score=258.40 Aligned_cols=202 Identities=27% Similarity=0.380 Sum_probs=144.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHH---------HHhccCCCCcc--------EEEE
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVIS---------LIERFYDPQAG--------EVLI 322 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~---------ll~g~~~~~~G--------~i~~ 322 (478)
.++++|++. ..|+|+||+|++||+++|+|+||||||||++ .+.|...+..+ -|.+
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 477777651 3699999999999999999999999999999 55664332111 1344
Q ss_pred CCeecCCCC----------HHHhh---------cc-----eEEEecC------------------C--------------
Q 048556 323 DGVNLKEFQ----------LKWIR---------GK-----IGLVSQE------------------P-------------- 346 (478)
Q Consensus 323 ~g~~~~~~~----------~~~~r---------~~-----i~~v~Q~------------------~-------------- 346 (478)
|-.++..-. .+++| +. ..|.++. +
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 444432211 01333 11 1122331 0
Q ss_pred ------CCCcc-cHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHH
Q 048556 347 ------VLFTS-SIKDNINYGKDGA-----SIAEIMAAAELANAAKFIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 347 ------~lf~~-ti~eNl~~~~~~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lARa 413 (478)
..+.+ ||.||+.++...+ ..+++.+.+ +.++.+ |++.. +++...+|||||+||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence 13445 8999998864321 122332222 234444 77765 788999999999999999999
Q ss_pred Hc---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEe------CCEEee
Q 048556 414 IL---KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIH------QGKLVE 477 (478)
Q Consensus 414 ll---~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~------~G~i~~ 477 (478)
|+ ++|+++||||||++||+.+.+.+++.|+++. ++.|+|+|||+++.++.||++++|+ +|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~ 897 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLA 897 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEE
Confidence 98 6999999999999999999999999998875 4789999999999998899999996 678764
No 386
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.93 E-value=1.2e-24 Score=220.95 Aligned_cols=208 Identities=22% Similarity=0.422 Sum_probs=171.3
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeec-CCCCHHHhhc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL-KEFQLKWIRG 337 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~-~~~~~~~~r~ 337 (478)
.-++++|++..-.. +.+.++++||++++||++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|+|+ ..++..++|+
T Consensus 256 ~vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 256 VVLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred eEEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 45899999986432 34789999999999999999999999999999999999999999999999997 7778877765
Q ss_pred c-eEEEecCCC---C-CcccHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhC---CCCccccccCCCCCC
Q 048556 338 K-IGLVSQEPV---L-FTSSIKDNINYGKDG---------ASIAEIMAAAELANAAKFIDSL---PQGLDTMVGEHGTQL 400 (478)
Q Consensus 338 ~-i~~v~Q~~~---l-f~~ti~eNl~~~~~~---------~~~~~~~~a~~~~~~~~~i~~l---p~g~~t~~~~~g~~L 400 (478)
. ++|||.|.+ + .+.|+.||+.+.... .+..++.+.+ .+.++.+ +.+- .....+|
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a-----~~li~~fdVr~~~~----~~~a~~L 404 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA-----RELIEEFDVRAPSP----DAPARSL 404 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH-----HHHHHHcCccCCCC----Ccchhhc
Confidence 5 999999984 4 455999999987532 1223333322 2334433 2222 2345789
Q ss_pred ChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 401 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 401 SgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||+.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.+ +++.|++||-+++++-. ||||.||.+|+++.
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 9999999999999999999999999999999999999999998875 57899999999998765 99999999999864
No 387
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.92 E-value=6.9e-25 Score=245.00 Aligned_cols=95 Identities=32% Similarity=0.546 Sum_probs=85.0
Q ss_pred HHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEe
Q 048556 381 FIDSLPQGLDT-MVGEHGTQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVA 455 (478)
Q Consensus 381 ~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~lARall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~it 455 (478)
.++.+ |++. .+++...+|||||+||++|||+|+++| +++||||||++||+.+.+.+.+.|+++. +++|+|+||
T Consensus 813 ~L~~v--gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiit 890 (943)
T PRK00349 813 TLVDV--GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIE 890 (943)
T ss_pred HHHHC--CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 34444 6665 478889999999999999999999999 9999999999999999999999998875 478999999
Q ss_pred cCchhhhhcCEEEEE------eCCEEee
Q 048556 456 HRLSTVRNADLIAVI------HQGKLVE 477 (478)
Q Consensus 456 H~~~~~~~~d~i~vl------~~G~i~~ 477 (478)
|+++.++.||+|++| ++|+++.
T Consensus 891 H~~~~i~~aD~ii~Lgp~~G~~~G~Iv~ 918 (943)
T PRK00349 891 HNLDVIKTADWIIDLGPEGGDGGGEIVA 918 (943)
T ss_pred cCHHHHHhCCEEEEecCCcCCCCCEEEE
Confidence 999999999999999 6899875
No 388
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.91 E-value=4e-22 Score=192.31 Aligned_cols=210 Identities=22% Similarity=0.338 Sum_probs=197.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556 4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL 83 (478)
Q Consensus 4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (478)
..+.+.++..++|.++++|+++.|..+|+++ ++|++++|+++|++.+++.+...+..++..+..+++.++++++.+|.+
T Consensus 65 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 143 (275)
T PF00664_consen 65 SSRISQRIRKDLRKRLFEKLLRLPYSYFDKN-SSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKL 143 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-cccccccccccccccccccccccccccccccchhhhhhhccccccccc
Confidence 3578899999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 84 TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGLA 163 (478)
Q Consensus 84 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 163 (478)
+++++++.|+.+++..++.++.++..++.++..++..+.+.|.++|+++||+||.|+.+.+++++..++..+...+..+.
T Consensus 144 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 223 (275)
T PF00664_consen 144 ALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKI 223 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHH
Q 048556 164 AGLGFGAFTFVAFSSYSLAIWFGGKM-ILEKGYKGGDVINVIFCVMIGSMSL 214 (478)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~g~~l-v~~g~ls~G~l~~~~~~~~~~~~~l 214 (478)
.........++..+..++++++|+++ +.+|.+++|+++++..+......|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 224 QALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 99999999999999899999999999 9999999999999988888777664
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=2.2e-24 Score=202.55 Aligned_cols=172 Identities=19% Similarity=0.225 Sum_probs=120.9
Q ss_pred cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC-CHHHhhcceEEEecCCCCCcccHHHHH
Q 048556 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF-QLKWIRGKIGLVSQEPVLFTSSIKDNI 357 (478)
Q Consensus 279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~-~~~~~r~~i~~v~Q~~~lf~~ti~eNl 357 (478)
++++++++.+| +.+|+||||||||||+..|.-....... ....|..+.++ ....-...|.+.+|+..++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 35677888877 7799999999999999999744332211 01112211111 00111355788888776655 2
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHH
Q 048556 358 NYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI----LKDPRILLLDEATSALDAE 433 (478)
Q Consensus 358 ~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal----l~~~~ililDEpts~LD~~ 433 (478)
+ ..+.+ ...+.+++.. .....+...+||+|||||++||||+ +.+|+++||||||++||..
T Consensus 84 ----~-~~~~~------~~~~~~~l~~-----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 ----P-LCVLS------QDMARSFLTS-----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ----c-CCHHH------HHHHHHHhcc-----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 1 11111 1223344443 2234556789999999999999999 6899999999999999999
Q ss_pred HHHHHHHHHHHhcC----CCeEEEEecCchhhhhcCEEEEEeCCE
Q 048556 434 SERVVQEALDKIMI----NRTTVIVAHRLSTVRNADLIAVIHQGK 474 (478)
Q Consensus 434 ~~~~i~~~l~~~~~----~~t~i~itH~~~~~~~~d~i~vl~~G~ 474 (478)
+...+.+.|++... .+|++++||+++.+..+|+|.+|..|+
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99999999988642 258999999999999999999998764
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.91 E-value=3.6e-24 Score=214.26 Aligned_cols=173 Identities=23% Similarity=0.424 Sum_probs=136.6
Q ss_pred cccccceeee-----cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCC-CCc
Q 048556 277 QIFNGFSLSI-----PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV-LFT 350 (478)
Q Consensus 277 ~~l~~is~~i-----~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~-lf~ 350 (478)
..+.++.+++ ..||+++++||||-||||++++|+|.++|++|+ .. .-.++|=||--. -|+
T Consensus 350 k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~----------~~~vSyKPQyI~~~~~ 415 (591)
T COG1245 350 KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EE----------DLKVSYKPQYISPDYD 415 (591)
T ss_pred eecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cc----------cceEeecceeecCCCC
Confidence 3455666664 567899999999999999999999999999997 11 236889999432 389
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q 048556 351 SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430 (478)
Q Consensus 351 ~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~L 430 (478)
||+++-+.-..+....+...+ .+.+ -|-.++..+.....+|||||.||+|||-||.+++++++||||++.|
T Consensus 416 gtV~~~l~~~~~~~~~~s~~~-------~ei~--~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L 486 (591)
T COG1245 416 GTVEDLLRSAIRSAFGSSYFK-------TEIV--KPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL 486 (591)
T ss_pred CcHHHHHHHhhhhhcccchhH-------Hhhc--CccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence 999998875444311111110 0111 1445666667778899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeC
Q 048556 431 DAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ 472 (478)
Q Consensus 431 D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~ 472 (478)
|.+.+-.+.+.|++.. .++|.++|.|++..+.. +||++|++.
T Consensus 487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9999999999999875 46899999999999988 899999963
No 391
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.1e-23 Score=213.67 Aligned_cols=194 Identities=25% Similarity=0.350 Sum_probs=161.4
Q ss_pred CccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhc
Q 048556 258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRG 337 (478)
Q Consensus 258 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 337 (478)
+..+++.+|+|.|+..+ .+.+.+++++++.-+.+++||++|+||||+++++.+-..|..|.+.+.+ |.
T Consensus 360 ~p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ 427 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RL 427 (582)
T ss_pred CCeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cc
Confidence 45799999999997532 2799999999999999999999999999999999999999999887743 67
Q ss_pred ceEEEecCCC-CCcc--cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCC-CCCChHHHHHHHHHHH
Q 048556 338 KIGLVSQEPV-LFTS--SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHG-TQLSGGQKQRIAIARA 413 (478)
Q Consensus 338 ~i~~v~Q~~~-lf~~--ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g-~~LSgGq~Qrl~lARa 413 (478)
+++|..|.-. .++- +..|-+.--.|..+++|+.+.|...|+ +..+.-.. ..||||||-|+++|-.
T Consensus 428 ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl-----------~g~la~~si~~LSGGQKsrvafA~~ 496 (582)
T KOG0062|consen 428 RIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGL-----------SGELALQSIASLSGGQKSRVAFAAC 496 (582)
T ss_pred eecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCC-----------CchhhhccccccCCcchhHHHHHHH
Confidence 8999999653 3332 233333333466688898888766544 44443333 6799999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
.+.+|.+|+|||||+.||.++-..+.++|+.+. .-||+|||+.++++. |+.+.+.++|++.
T Consensus 497 ~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt 558 (582)
T KOG0062|consen 497 TWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVT 558 (582)
T ss_pred hcCCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEE
Confidence 999999999999999999999999999998864 479999999999998 9999999999985
No 392
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=2.6e-23 Score=231.95 Aligned_cols=90 Identities=32% Similarity=0.567 Sum_probs=82.4
Q ss_pred Cccc-cccCCCCCCChHHHHHHHHHHHHcC---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh
Q 048556 388 GLDT-MVGEHGTQLSGGQKQRIAIARAILK---DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR 462 (478)
Q Consensus 388 g~~t-~~~~~g~~LSgGq~Qrl~lARall~---~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~ 462 (478)
|++. .+++...+|||||+||++|||+|++ +|+++||||||++||+.+.+.+.+.|+++. ++.|+|+|+|+++.++
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 6665 4788899999999999999999997 599999999999999999999999998875 4789999999999998
Q ss_pred hcCEEEEE------eCCEEee
Q 048556 463 NADLIAVI------HQGKLVE 477 (478)
Q Consensus 463 ~~d~i~vl------~~G~i~~ 477 (478)
.||+|++| ++|++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~ 916 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVA 916 (924)
T ss_pred hCCEEEEecCCccCCCCEEEE
Confidence 99999999 7899875
No 393
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=5.3e-23 Score=209.89 Aligned_cols=211 Identities=25% Similarity=0.353 Sum_probs=140.8
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEEC--CeecCCCCHHHhh
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID--GVNLKEFQLKWIR 336 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~--g~~~~~~~~~~~r 336 (478)
..+.++|++++|.+ .+.++|.+|++.+|+.+||+|+|||||||+++.+.|-..|..-++.+- ..++..-+.+.+.
T Consensus 74 ~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~ 150 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ 150 (614)
T ss_pred ccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence 46999999999974 579999999999999999999999999999999999998866544321 1111110111111
Q ss_pred cceEEEecCCCCCcccHHHHHhcCCCCCCHH---HHHHHHHHhc-------HHHHHHhCCCCc-cccccCCCCCCChHHH
Q 048556 337 GKIGLVSQEPVLFTSSIKDNINYGKDGASIA---EIMAAAELAN-------AAKFIDSLPQGL-DTMVGEHGTQLSGGQK 405 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~---~~~~a~~~~~-------~~~~i~~lp~g~-~t~~~~~g~~LSgGq~ 405 (478)
.-+-.+.++.. =-.--.|++.-.+++...+ ++++.+...+ +...+..+ |. ..........|||||+
T Consensus 151 ~v~~~~~~e~~-rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~gl--gf~~~m~~k~~~~~SgGwr 227 (614)
T KOG0927|consen 151 AVVMETDHERK-RLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGL--GFLSEMQDKKVKDLSGGWR 227 (614)
T ss_pred HHhhhhHHHHH-HHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhc--CCCHhHHHHHhhccCchHH
Confidence 00000000000 0001123333322221111 1222111111 11122222 33 2344556789999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
.|++|||||+.+|++|+|||||++||.++...+.+.|.+.... ++++++|.-.++.. |..|+-|++++.+
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~ 298 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLI 298 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheeccccee
Confidence 9999999999999999999999999999999999999875332 89999999999988 9999999998843
No 394
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.9e-23 Score=205.32 Aligned_cols=191 Identities=28% Similarity=0.392 Sum_probs=146.3
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
.-+-+.||+|.|++. .|.+++++|-|.--..+|||||||.|||||+++|.|-++|++|+.+=| .|-+
T Consensus 585 PvLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~ 651 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLR 651 (807)
T ss_pred CeeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceee
Confidence 357889999999864 689999999999999999999999999999999999999999987532 3557
Q ss_pred eEEEecCCC--CC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 339 IGLVSQEPV--LF-TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 339 i~~v~Q~~~--lf-~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
||+..|... |= ..|-.|-+.-.. +...++-.+++..-|+..- -.| -....|||||+-|+++|-.-+
T Consensus 652 iG~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sH-------AHT---ikikdLSGGQKaRValaeLal 720 (807)
T KOG0066|consen 652 IGWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASH-------AHT---IKIKDLSGGQKARVALAELAL 720 (807)
T ss_pred eechhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhc-------cce---EeeeecCCcchHHHHHHHHhc
Confidence 999998653 22 337777765433 2334444444433333211 011 134689999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhc-CEEEEEeCCEE
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNA-DLIAVIHQGKL 475 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~-d~i~vl~~G~i 475 (478)
+.|+||||||||.+||.++-..+-++|.... ..||+|||+-..+... =..+|+++-.|
T Consensus 721 ~~PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 721 GGPDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CCCCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccCCh
Confidence 9999999999999999999999999998864 4799999998887652 24455555433
No 395
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=8.1e-24 Score=214.73 Aligned_cols=187 Identities=28% Similarity=0.395 Sum_probs=131.5
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
.+|..+|++.+|.+ +..|++-++++..|..+|+|||||+|||||+|+|+. |+|.....+ +++|..
T Consensus 79 ~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~ 143 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD 143 (582)
T ss_pred cceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence 47999999999964 579999999999999999999999999999999987 555443322 111111
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCC----CHHHHHHHHHHhcHHHHHHhCCCCcccccc-CCCCCCChHHHHHHHHHHH
Q 048556 339 IGLVSQEPVLFTSSIKDNINYGKDGA----SIAEIMAAAELANAAKFIDSLPQGLDTMVG-EHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 339 i~~v~Q~~~lf~~ti~eNl~~~~~~~----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~-~~g~~LSgGq~Qrl~lARa 413 (478)
-....| ..+-.+|-+.-+..-.+.. +.+|+.. +.+..+ |.....- ..-..||||=|-|++||||
T Consensus 144 ~t~~~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~--------~~L~gl--GFt~emq~~pt~slSGGWrMrlaLARA 212 (582)
T KOG0062|consen 144 DTEALQ-SVLESDTERLDFLAEEKELLAGLTLEEIYD--------KILAGL--GFTPEMQLQPTKSLSGGWRMRLALARA 212 (582)
T ss_pred chHHHh-hhhhccHHHHHHHHhhhhhhccchHHHHHH--------HHHHhC--CCCHHHHhccccccCcchhhHHHHHHH
Confidence 111111 1123344444443222110 1223222 022233 4443332 3357899999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCC
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQG 473 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G 473 (478)
|+.+||+|+|||||+.||..+-..+.+-|..+. .|+|+|||+-+++.. |..|+.+++-
T Consensus 213 lf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~ 271 (582)
T KOG0062|consen 213 LFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENL 271 (582)
T ss_pred HhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998753 799999999999987 7777666543
No 396
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.89 E-value=3.2e-23 Score=188.74 Aligned_cols=209 Identities=21% Similarity=0.347 Sum_probs=159.0
Q ss_pred EEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC----CccEEEECCeecCCCCHHHhh
Q 048556 262 ELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGVNLKEFQLKWIR 336 (478)
Q Consensus 262 ~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~----~~G~i~~~g~~~~~~~~~~~r 336 (478)
.++|++..+.... -..+.+++|++...||+-++||+||||||-+.|.++|..+. +.-...+++.++-++++.+.|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 3455554443211 23689999999999999999999999999999999999753 456677899999999988877
Q ss_pred cc----eEEEecCCCCC---cccHHHHHhcCCCCCCH------------HHHHHHHHHhcHHHHHHhCCCCccccccCCC
Q 048556 337 GK----IGLVSQEPVLF---TSSIKDNINYGKDGASI------------AEIMAAAELANAAKFIDSLPQGLDTMVGEHG 397 (478)
Q Consensus 337 ~~----i~~v~Q~~~lf---~~ti~eNl~~~~~~~~~------------~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g 397 (478)
+- |++++|+|.-. +.+|-..+.-.-|.-+. .+-.+.+.++|++|-=+ .....+
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkD--------IM~SYP 156 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------IMRSYP 156 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHH--------HHHhCc
Confidence 54 78999999643 22443333322232221 23334466666654211 112345
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556 398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGK 474 (478)
Q Consensus 398 ~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~ 474 (478)
.+|..||-|++-||.|+..+|++||-||||.++|+.|..+|+..|.++.+ +.|+++++|++..+.. ||+|-||--|+
T Consensus 157 ~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ 236 (330)
T COG4170 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQ 236 (330)
T ss_pred chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecc
Confidence 67889999999999999999999999999999999999999999988864 5789999999999988 99999999998
Q ss_pred EeeC
Q 048556 475 LVEK 478 (478)
Q Consensus 475 i~~~ 478 (478)
-+|+
T Consensus 237 ~~ES 240 (330)
T COG4170 237 TVES 240 (330)
T ss_pred cccc
Confidence 7763
No 397
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.88 E-value=5.9e-22 Score=179.96 Aligned_cols=204 Identities=26% Similarity=0.354 Sum_probs=152.9
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
..|++.++.|+|+.. .|++-|+|++++.|..+.+||.||||||||+|+|.|-.-...|.|.++|.+.-.-..-+-...
T Consensus 12 ~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred ceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 469999999999864 389999999999999999999999999999999999887778999999987532110011122
Q ss_pred eEEEecCCC---CCc-------ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556 339 IGLVSQEPV---LFT-------SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 339 i~~v~Q~~~---lf~-------~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
.+|+.-+-. .+. +--.+.+.++-....+++-++ .|.- +|-.+.=+-..+|-|||+|+
T Consensus 90 l~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~---------LI~i----LDIdl~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREK---------LIDI----LDIDLRWRMHKVSDGQRRRV 156 (291)
T ss_pred eeEecccccccccccccccccccccHHHHHhhccCCChhHhhh---------hhhh----eeccceEEEeeccccchhhh
Confidence 444433211 111 111334444433222322211 1211 23334445578999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
.||..|++.=++|+|||.|--||...+..+.+-+++.++ ++|+++.||=..-++. ..+++.+.+|+++.
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 999999999999999999999999999999999988763 6899999999998887 89999999999874
No 398
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.88 E-value=4.9e-22 Score=183.44 Aligned_cols=85 Identities=25% Similarity=0.310 Sum_probs=76.5
Q ss_pred HHhCCCCccccccCCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEec
Q 048556 382 IDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAH 456 (478)
Q Consensus 382 i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH 456 (478)
+..+|+|-.|++ |||||+||++|||++. .+|+++++||||++||+.+.+.+.+.+.+..+ ++|+|++||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 456788877776 9999999999999985 79999999999999999999999999988754 489999999
Q ss_pred CchhhhhcCEEEEEeC
Q 048556 457 RLSTVRNADLIAVIHQ 472 (478)
Q Consensus 457 ~~~~~~~~d~i~vl~~ 472 (478)
+++.+..+|+++.++.
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999989999999975
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.86 E-value=6.4e-22 Score=186.31 Aligned_cols=142 Identities=13% Similarity=0.139 Sum_probs=107.5
Q ss_pred cccceeeecCCC-EEEEEcCCCCChHHHHHHHh--------ccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCC
Q 048556 279 FNGFSLSIPSGT-TAALVGQSGSGKSTVISLIE--------RFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLF 349 (478)
Q Consensus 279 l~~is~~i~~G~-~~~ivG~sGsGKSTL~~ll~--------g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf 349 (478)
..++||++++|+ .++|+||||||||||++.+. |.+-|....+ .++|++|.-..+
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~l 79 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFADI 79 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEec
Confidence 457999999996 69999999999999999998 5554432111 233433431100
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC
Q 048556 350 TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 429 (478)
Q Consensus 350 ~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~ 429 (478)
|.+..+.++-.++|+||+|+..+++++ .+|+++++||||++
T Consensus 80 --------------------------------------g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~g 120 (200)
T cd03280 80 --------------------------------------GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSG 120 (200)
T ss_pred --------------------------------------CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCC
Confidence 111112233468999999999999985 89999999999999
Q ss_pred CCHHHHHHHHH-HHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEe
Q 048556 430 LDAESERVVQE-ALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKLV 476 (478)
Q Consensus 430 LD~~~~~~i~~-~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~ 476 (478)
+|+.+...+.. .++.+. .+.|+|++||+.+..+.||++.+|++|+++
T Consensus 121 lD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~ 169 (200)
T cd03280 121 TDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASME 169 (200)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEE
Confidence 99999988865 466554 368999999997777779999999999985
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=6.4e-21 Score=188.37 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=70.1
Q ss_pred CCChHHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 048556 399 QLSGGQKQRIAIARAILK----DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGK 474 (478)
Q Consensus 399 ~LSgGq~Qrl~lARall~----~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~ 474 (478)
.|||||+||+++||+++. +|++++|||||++||+.+...+.+.+++..+++|+|++||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 499999999999997653 9999999999999999999999999998877889999999999888899999998863
No 401
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=3.9e-21 Score=182.51 Aligned_cols=180 Identities=15% Similarity=0.163 Sum_probs=113.1
Q ss_pred ccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-h-----cceEEEecCCCCCccc-
Q 048556 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-R-----GKIGLVSQEPVLFTSS- 352 (478)
Q Consensus 280 ~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r-----~~i~~v~Q~~~lf~~t- 352 (478)
+++.+++.+| ..+|+||||||||||+.+|.-..-...... .... ..+++ + ..|-...+... ..
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~~-----~~~~~i~~g~~~~~v~~~~~~~~---~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRAK-----KVGEFVKRGCDEGTIEIELYGNP---GNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-cccc-----CHHHHhhCCCCcEEEEEEEEeCC---Ccc
Confidence 4556666554 668999999999999999866552211100 0000 00111 0 11111111100 01
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH----HcCCCCEEEEeCCCC
Q 048556 353 IKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA----ILKDPRILLLDEATS 428 (478)
Q Consensus 353 i~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa----ll~~~~ililDEpts 428 (478)
..+|+++. .+.+.+.+.+..... +.+..+|.+.+. -..+...||||||||+.+|++ ++.+|+++++||||+
T Consensus 85 ~~~n~~~~---~~q~~~~~~~~~~~~-e~l~~~~~~~~~-~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~ 159 (213)
T cd03277 85 QVDNLCQF---LPQDRVGEFAKLSPI-ELLVKFREGEQL-QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQ 159 (213)
T ss_pred ccCCceEE---EchHHHHHHHhCChH-hHheeeecCCCc-cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccc
Confidence 23344322 133444444444332 455566665543 255778999999999887754 458999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcC--C-CeEEEEecCchhh-hhcC--EEEEEeCCE
Q 048556 429 ALDAESERVVQEALDKIMI--N-RTTVIVAHRLSTV-RNAD--LIAVIHQGK 474 (478)
Q Consensus 429 ~LD~~~~~~i~~~l~~~~~--~-~t~i~itH~~~~~-~~~d--~i~vl~~G~ 474 (478)
+||+.+++.+.+.+.+..+ + .|+|++||++... ..+| +|+++++|+
T Consensus 160 ~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 160 GMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 9999999999999988753 3 4799999998554 3454 899999997
No 402
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.83 E-value=1.6e-20 Score=188.21 Aligned_cols=188 Identities=21% Similarity=0.384 Sum_probs=136.6
Q ss_pred eEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeec-----CCCCHHHhh---
Q 048556 265 DIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL-----KEFQLKWIR--- 336 (478)
Q Consensus 265 ~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~-----~~~~~~~~r--- 336 (478)
++.-+|..+ ...|..+- ..++|+.+||+||||-||||-+|+|+|...|.=|+- ++.+- ..+.-.++.
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF 153 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYF 153 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHH
Confidence 355677532 23444432 457999999999999999999999999999987753 33110 111111110
Q ss_pred -----------cceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 337 -----------GKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 337 -----------~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
.++-||.--|..+.||+.|-+.-.+. .-..++.++.| +++..++....+|||||-
T Consensus 154 ~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de------------~g~~devve~l--~L~nvl~r~v~~LSGGEL 219 (591)
T COG1245 154 KKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE------------RGKFDEVVERL--GLENVLDRDVSELSGGEL 219 (591)
T ss_pred HHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh------------cCcHHHHHHHh--cchhhhhhhhhhcCchHH
Confidence 11223333445556666665543221 11234556666 777788888999999999
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEe
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIH 471 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~ 471 (478)
||+|||-|++++++++++|||||-||...+-...+.++++.+ +++||+|-|++..+.. +|.|.++-
T Consensus 220 Qr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 220 QRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 999999999999999999999999999999999999999876 6999999999999988 89988874
No 403
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.83 E-value=1.4e-20 Score=209.41 Aligned_cols=199 Identities=25% Similarity=0.423 Sum_probs=161.9
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC---CccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP---QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS- 351 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~- 351 (478)
.++|+|++.-++||+.+.+.||+|||||||++.++|-.+. ..|+|.+||.+.+++-+ ++.++|++|+..-|+.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 4699999999999999999999999999999999998754 35799999999988765 7889999999988876
Q ss_pred cHHHHHhcCC----CCCCHHHHHHHHHHhcHHHH---HHhCCCCccccccCC-CCCCChHHHHHHHHHHHHcCCCCEEEE
Q 048556 352 SIKDNINYGK----DGASIAEIMAAAELANAAKF---IDSLPQGLDTMVGEH-GTQLSGGQKQRIAIARAILKDPRILLL 423 (478)
Q Consensus 352 ti~eNl~~~~----~~~~~~~~~~a~~~~~~~~~---i~~lp~g~~t~~~~~-g~~LSgGq~Qrl~lARall~~~~ilil 423 (478)
|+||-+.|.. |....+++.+..+.+...|. +-.|....||.+|.. ....|||||.|+++|-+++.+|+++++
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 9999999863 21111222222222112222 235556789999865 478999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCch--hhhhcCEEEEEeCCEEee
Q 048556 424 DEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLS--TVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 424 DEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~--~~~~~d~i~vl~~G~i~~ 477 (478)
||+|.|||..|.-+|.++|+.+.+ +.|.++.=|+.+ .....|+|.+|.+|+++-
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy 342 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIY 342 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEE
Confidence 999999999999999999998754 678888888875 456689999999999873
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.82 E-value=6.7e-20 Score=181.80 Aligned_cols=178 Identities=25% Similarity=0.386 Sum_probs=137.9
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc--------CCCCccEEEECCeecCCCCHHHhhcceEEEecCCC
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--------YDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV 347 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--------~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 347 (478)
.++|+|+||+|++|+.++|+|+|||||||++++++|. |.|++|.|.+--..+ -+.+|-+-.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~E 464 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYE 464 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCcccc
Confidence 4789999999999999999999999999999999997 689999997632221 234554321
Q ss_pred -CCcc-cHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEe
Q 048556 348 -LFTS-SIKDNINYGKDGASI-AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 424 (478)
Q Consensus 348 -lf~~-ti~eNl~~~~~~~~~-~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililD 424 (478)
-|.+ |+-|.+.- ...| .--.+.+..+|+.|.+. --.....||.|||-|..||+++..+|.+++.|
T Consensus 465 p~f~~~tilehl~s---~tGD~~~AveILnraGlsDAvl---------yRr~f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 465 PEFGEVTILEHLRS---KTGDLNAAVEILNRAGLSDAVL---------YRRKFSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cccCchhHHHHHhh---ccCchhHHHHHHHhhccchhhh---------hhccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 2444 88888742 1222 22233455555544321 12345789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh--cCEEEEEeCCEEe
Q 048556 425 EATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN--ADLIAVIHQGKLV 476 (478)
Q Consensus 425 Epts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~--~d~i~vl~~G~i~ 476 (478)
|--|.||+.|...+...|.++. .+.|.+++|||.+.... =|+++.+.-|+..
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 9999999999999999999886 57899999999999877 3999888777653
No 405
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.82 E-value=3.9e-20 Score=168.31 Aligned_cols=137 Identities=23% Similarity=0.279 Sum_probs=101.2
Q ss_pred ceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCC
Q 048556 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK 361 (478)
Q Consensus 282 is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~ 361 (478)
.+..+.++..+.|+|||||||||+++.+....-..+|.+... .+. +.=.++|+...-|
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~---------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV---------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc---------cCCCcceeeEEEE------------
Confidence 445555667999999999999999999876665555554330 000 0001122211111
Q ss_pred CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHH
Q 048556 362 DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK----DPRILLLDEATSALDAESERV 437 (478)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~----~~~ililDEpts~LD~~~~~~ 437 (478)
+. +. ..||+||+||+++||++.. +|+++|+|||++++|+.....
T Consensus 72 --------------------i~-------~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~ 119 (162)
T cd03227 72 --------------------IF-------TR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQA 119 (162)
T ss_pred --------------------eh-------he-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 00 00 1199999999999999986 789999999999999999999
Q ss_pred HHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeC
Q 048556 438 VQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQ 472 (478)
Q Consensus 438 i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~ 472 (478)
+.+.+.+.. +++++|++||+++..+.+|+++.|+.
T Consensus 120 l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 120 LAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 999998764 35899999999999999999999964
No 406
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.79 E-value=2.5e-19 Score=171.17 Aligned_cols=148 Identities=20% Similarity=0.187 Sum_probs=108.2
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE-EEecCCCCCcccHH
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG-LVSQEPVLFTSSIK 354 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~ 354 (478)
..+.+|+++++++|++++|.|||||||||+++.++-. .+..++| |||.+...++ +.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~---------------------~~la~~g~~vpa~~~~~~--~~ 73 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI---------------------VLMAQIGCFVPCDSADIP--IV 73 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH---------------------HHHHHhCCCcCcccEEEe--cc
Confidence 4688999999999999999999999999999999811 2234455 6666542221 11
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCC---CCC
Q 048556 355 DNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEA---TSA 429 (478)
Q Consensus 355 eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal--l~~~~ililDEp---ts~ 429 (478)
+.+ +..+ |++... ...+|.|++|+..+++++ +.+|+++||||| |++
T Consensus 74 ~~i------------------------l~~~--~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~ 124 (222)
T cd03285 74 DCI------------------------LARV--GASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTST 124 (222)
T ss_pred cee------------------------Eeee--ccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCCh
Confidence 111 1111 111111 357999999999999999 899999999999 999
Q ss_pred CCHHHHHHHH-HHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEe
Q 048556 430 LDAESERVVQ-EALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLV 476 (478)
Q Consensus 430 LD~~~~~~i~-~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~ 476 (478)
+|+....... +.+.+ ..++++|++||..+..+.||++..+++|++.
T Consensus 125 lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~ 171 (222)
T cd03285 125 YDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVT 171 (222)
T ss_pred HHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEE
Confidence 9998765433 44443 2468999999975555669999999999875
No 407
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.3e-18 Score=171.36 Aligned_cols=193 Identities=18% Similarity=0.267 Sum_probs=118.3
Q ss_pred cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-----------------------------------------Cc
Q 048556 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-----------------------------------------QA 317 (478)
Q Consensus 279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------------------------------------~~ 317 (478)
+++.++++.+| +.+|+|||||||||++.+|.-+... ..
T Consensus 12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~ 90 (270)
T cd03242 12 YAELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGG 90 (270)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCc
Confidence 34566777776 6889999999999999886533210 01
Q ss_pred cEEEECCeecCC-CCHHHhhcceEEEecCCCCCcccHHHHHhcCC----C-CCCHHHHHHHHHHh-cHHHHHHhCCCCcc
Q 048556 318 GEVLIDGVNLKE-FQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK----D-GASIAEIMAAAELA-NAAKFIDSLPQGLD 390 (478)
Q Consensus 318 G~i~~~g~~~~~-~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~----~-~~~~~~~~~a~~~~-~~~~~i~~lp~g~~ 390 (478)
..+.+||..++. -+..++-..+.+.|++..|+.++-.+...+-+ + .....+.++..+++ .-.+.+.+-|+.-+
T Consensus 91 ~~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~~~~~~~~~~g~~~d~ 170 (270)
T cd03242 91 RKARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKALRQRNALLKGPHRDD 170 (270)
T ss_pred eEEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhCCCChhh
Confidence 134466665544 11222334466777777777543333322211 1 11111222211111 00111111344433
Q ss_pred cccc----CCCCCCChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecC
Q 048556 391 TMVG----EHGTQLSGGQKQRIAIARAIL---------KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHR 457 (478)
Q Consensus 391 t~~~----~~g~~LSgGq~Qrl~lARall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~ 457 (478)
..+. +....+|+||+|++++||+|+ .+|++++|||||++||+...+.+.+.+.+.. .+++++|+
T Consensus 171 l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~ 247 (270)
T cd03242 171 LLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTD 247 (270)
T ss_pred eEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCC
Confidence 3332 223458999999999999974 7999999999999999999999999997753 45566666
Q ss_pred chhhhh-c---CEEEEEeCCEE
Q 048556 458 LSTVRN-A---DLIAVIHQGKL 475 (478)
Q Consensus 458 ~~~~~~-~---d~i~vl~~G~i 475 (478)
...+.. | ++++.+++|++
T Consensus 248 ~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 248 LADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred chhccchhccCccEEEEeCcEE
Confidence 555444 5 78999999986
No 408
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.78 E-value=6.6e-19 Score=170.36 Aligned_cols=180 Identities=18% Similarity=0.248 Sum_probs=123.8
Q ss_pred eeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc--EEEECCeecCCCCHHHhhcce---EEEecCCCCCcccHHHHHh
Q 048556 284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGVNLKEFQLKWIRGKI---GLVSQEPVLFTSSIKDNIN 358 (478)
Q Consensus 284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G--~i~~~g~~~~~~~~~~~r~~i---~~v~Q~~~lf~~ti~eNl~ 358 (478)
+.+.+||+++|+||+|+|||||++.+.+..+...+ .+.+-...-+..+..++.+.+ -++.+-. .+......
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~----~~~~~~~~ 86 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFD----EPPERHVQ 86 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCC----CCHHHHHH
Confidence 57899999999999999999999999999877533 323221111123444444433 1111100 01111111
Q ss_pred cCCCCCCHHHHHHHHH---Hhc-----HHHHHHhCCCCccccccCCCCCCChHH--------HHHHHHHHHHcCCCCEEE
Q 048556 359 YGKDGASIAEIMAAAE---LAN-----AAKFIDSLPQGLDTMVGEHGTQLSGGQ--------KQRIAIARAILKDPRILL 422 (478)
Q Consensus 359 ~~~~~~~~~~~~~a~~---~~~-----~~~~i~~lp~g~~t~~~~~g~~LSgGq--------~Qrl~lARall~~~~ili 422 (478)
.. ......++ ..| +-|.+.++|+++++..++.|..+|||| +||+++||+++++++|.+
T Consensus 87 ~~------~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~ 160 (249)
T cd01128 87 VA------EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI 160 (249)
T ss_pred HH------HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence 00 01111111 111 123577899999999999999999999 999999999999999999
Q ss_pred EeCCCCCCCHHHHHH-HHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 423 LDEATSALDAESERV-VQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 423 lDEpts~LD~~~~~~-i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
| ||+.+|..++.. ++ +..+. ..+|.|++||++....++|.|.||+.|++.+
T Consensus 161 l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~ 213 (249)
T cd01128 161 I--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKE 213 (249)
T ss_pred e--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccc
Confidence 9 999999765543 33 33333 4689999999999999999999999998653
No 409
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.76 E-value=4.1e-18 Score=198.60 Aligned_cols=186 Identities=19% Similarity=0.287 Sum_probs=129.2
Q ss_pred ccccceeeecCCCEEEEEcCCCCChHHHHHHHh----------ccCCCCccEEEECCeecCCCC----------HHHhhc
Q 048556 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE----------RFYDPQAGEVLIDGVNLKEFQ----------LKWIRG 337 (478)
Q Consensus 278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~----------g~~~~~~G~i~~~g~~~~~~~----------~~~~r~ 337 (478)
=|+|++.+|+-|..++|.|-||||||||++=.+ |. +.-+--|.+|-.++..-+ .+++|+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~-~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGP-SVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccc-cccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 489999999999999999999999999997544 22 233445778777764321 234455
Q ss_pred ceEEEec------CCCCCc-------------------------------------------------c-cHHHHHhcCC
Q 048556 338 KIGLVSQ------EPVLFT-------------------------------------------------S-SIKDNINYGK 361 (478)
Q Consensus 338 ~i~~v~Q------~~~lf~-------------------------------------------------~-ti~eNl~~~~ 361 (478)
-++-.|+ .+..|+ | +|.|-+.+
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~m-- 1661 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQT-- 1661 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcC--
Confidence 4443222 111121 1 11111111
Q ss_pred CCCCHHHHHHHH----HHhcHHHHHHhCCCCccc-cccCCCCCCChHHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHH
Q 048556 362 DGASIAEIMAAA----ELANAAKFIDSLPQGLDT-MVGEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAE 433 (478)
Q Consensus 362 ~~~~~~~~~~a~----~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgGq~Qrl~lARall~~---~~ililDEpts~LD~~ 433 (478)
+.+|..+.. +.....+.+... |+.. .+|+...+|||||.|||-||.-|.++ +.++||||||.+|++.
T Consensus 1662 ---tv~ea~~~F~~~~~i~~~L~~L~~v--GLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~ 1736 (1809)
T PRK00635 1662 ---PIEEVAETFPFLKKIQKPLQALIDN--GLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQ 1736 (1809)
T ss_pred ---CHHHHHHHhhccHHHHHHHHHHHHc--CCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHH
Confidence 111111100 111112233444 5543 57999999999999999999999876 7899999999999999
Q ss_pred HHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEe
Q 048556 434 SERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIH 471 (478)
Q Consensus 434 ~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~ 471 (478)
..+.+++.++++. .+.|||+|.|++..++.||.|+-|.
T Consensus 1737 d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlg 1775 (1809)
T PRK00635 1737 QKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMG 1775 (1809)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcC
Confidence 9999999998885 5799999999999999999999993
No 410
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=4.5e-18 Score=181.06 Aligned_cols=90 Identities=30% Similarity=0.564 Sum_probs=80.8
Q ss_pred Cccc-cccCCCCCCChHHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh
Q 048556 388 GLDT-MVGEHGTQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR 462 (478)
Q Consensus 388 g~~t-~~~~~g~~LSgGq~Qrl~lARall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~ 462 (478)
|+.. .+|+...+|||||.||+-||.-|.+++ -++||||||.||-.+..+++++.|.++- ++.|||+|-|+|+.++
T Consensus 810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk 889 (935)
T COG0178 810 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK 889 (935)
T ss_pred CcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe
Confidence 5543 679999999999999999999999988 8999999999999999999999998885 6899999999999999
Q ss_pred hcCEEEEE------eCCEEee
Q 048556 463 NADLIAVI------HQGKLVE 477 (478)
Q Consensus 463 ~~d~i~vl------~~G~i~~ 477 (478)
.||.|+-| +.|+|+.
T Consensus 890 ~AD~IIDLGPeGG~~GG~iva 910 (935)
T COG0178 890 TADWIIDLGPEGGDGGGEIVA 910 (935)
T ss_pred ecCEEEEcCCCCCCCCceEEE
Confidence 99999998 3356654
No 411
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.75 E-value=1.6e-18 Score=162.88 Aligned_cols=137 Identities=19% Similarity=0.234 Sum_probs=95.8
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHH
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKD 355 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~e 355 (478)
++++|++++. |++++|+||||||||||+|+|+|... +...|.++... .+++|...+|.. |++|
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVSD 78 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccchh
Confidence 5778876665 79999999999999999999987553 12345444221 256675567765 9999
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 048556 356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 435 (478)
Q Consensus 356 Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~ 435 (478)
|+.++... ..++. ..+.+.++.+. ..+|+++|+||||+++|+.+.
T Consensus 79 ~l~~~~s~-~~~e~------~~~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 79 DLRDGISY-FYAEL------RRLKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred ccccccCh-HHHHH------HHHHHHHHhcc----------------------------CCCCeEEEEecccCCCCHHHH
Confidence 99886532 12222 12344444431 079999999999999999988
Q ss_pred HHHHH-HHHHhc-CCCeEEEEecCchhhhhc
Q 048556 436 RVVQE-ALDKIM-INRTTVIVAHRLSTVRNA 464 (478)
Q Consensus 436 ~~i~~-~l~~~~-~~~t~i~itH~~~~~~~~ 464 (478)
..+.. .++.+. .+.|+|++||+++.+...
T Consensus 124 ~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 124 QAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 76654 455543 468999999999876543
No 412
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.74 E-value=7.2e-18 Score=158.99 Aligned_cols=147 Identities=15% Similarity=0.154 Sum_probs=98.4
Q ss_pred cceeeecCCCEEEEEcCCCCChHHHHHHHhcc-CCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhc
Q 048556 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERF-YDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINY 359 (478)
Q Consensus 281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~ 359 (478)
..++++.+|++++|+||||||||||++.+++. +.+..|...- . .+..+++..|...-|. ..+
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~----------~-~~~~i~~~dqi~~~~~--~~d---- 83 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP----------A-ESASIPLVDRIFTRIG--AED---- 83 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc----------c-cccccCCcCEEEEEec--Ccc----
Confidence 34566778999999999999999999999943 2222332110 0 0122333322111110 000
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q 048556 360 GKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439 (478)
Q Consensus 360 ~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~ 439 (478)
.+.++-..++++++| +..+.+++.+|+++|+||||+++|+.....+.
T Consensus 84 --------------------------------~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 84 --------------------------------SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred --------------------------------cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 111222455666665 66667888999999999999999999887775
Q ss_pred HH-HHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 440 EA-LDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 440 ~~-l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
.. ++.+. .+.++|++||+.+..+.++++..+++|++.+
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~ 170 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEE 170 (202)
T ss_pred HHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEE
Confidence 54 44443 4689999999999999999988888888753
No 413
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.72 E-value=5.1e-18 Score=141.82 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=71.8
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD 355 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 355 (478)
.++|++++|++++||.++|+||||||||||++++. +|++.++|.|+..++.++.++.++++||+ +|.+||+|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 46899999999999999999999999999999986 79999999999999988888889999998 99999999
Q ss_pred HHhc
Q 048556 356 NINY 359 (478)
Q Consensus 356 Nl~~ 359 (478)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9998
No 414
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=8.3e-17 Score=180.14 Aligned_cols=95 Identities=31% Similarity=0.514 Sum_probs=84.8
Q ss_pred HHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEec
Q 048556 381 FIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAH 456 (478)
Q Consensus 381 ~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lARall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH 456 (478)
++..+ |++.. ++....+|||||+||++|||||..+| +++||||||++||+.+.+.+.+.|+++. +++|||+|+|
T Consensus 470 ~L~~v--gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeH 547 (924)
T TIGR00630 470 FLIDV--GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEH 547 (924)
T ss_pred hHhhc--cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 34444 66654 67889999999999999999999986 8999999999999999999999999885 4789999999
Q ss_pred CchhhhhcCEEEEE------eCCEEee
Q 048556 457 RLSTVRNADLIAVI------HQGKLVE 477 (478)
Q Consensus 457 ~~~~~~~~d~i~vl------~~G~i~~ 477 (478)
+++.++.||+|++| ++|+|+.
T Consensus 548 d~~~i~~aD~vi~LgpgaG~~~G~Iv~ 574 (924)
T TIGR00630 548 DEETIRAADYVIDIGPGAGIHGGEVVA 574 (924)
T ss_pred CHHHHhhCCEEEEecccccCCCCEEee
Confidence 99999999999999 8999875
No 415
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.69 E-value=1.1e-16 Score=179.38 Aligned_cols=95 Identities=33% Similarity=0.521 Sum_probs=85.5
Q ss_pred HHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEec
Q 048556 381 FIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAH 456 (478)
Q Consensus 381 ~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lARall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH 456 (478)
+++.+ |++.. ++....+|||||+||++|||||..+| +++||||||++||+...+.+.+.|+++. .++|||+|+|
T Consensus 472 ~L~~v--GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH 549 (943)
T PRK00349 472 FLVDV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEH 549 (943)
T ss_pred Hhhcc--ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 45555 77655 67889999999999999999999997 9999999999999999999999999886 4789999999
Q ss_pred CchhhhhcCEEEEE------eCCEEee
Q 048556 457 RLSTVRNADLIAVI------HQGKLVE 477 (478)
Q Consensus 457 ~~~~~~~~d~i~vl------~~G~i~~ 477 (478)
+++.+..||+|++| ++|+++.
T Consensus 550 ~~~~i~~aD~vi~LgpgaG~~~G~iv~ 576 (943)
T PRK00349 550 DEDTIRAADYIVDIGPGAGVHGGEVVA 576 (943)
T ss_pred CHHHHHhCCEEEEeccccCCCCCEEee
Confidence 99999899999999 8899874
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.66 E-value=5.1e-16 Score=151.93 Aligned_cols=131 Identities=16% Similarity=0.246 Sum_probs=96.4
Q ss_pred CEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC-HHHhhcceEEEecCCCCCc-ccHHHHHhcCCCCCCHH
Q 048556 290 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ-LKWIRGKIGLVSQEPVLFT-SSIKDNINYGKDGASIA 367 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~-~~~~r~~i~~v~Q~~~lf~-~ti~eNl~~~~~~~~~~ 367 (478)
..++|+||+|||||||++.|+|++.|++|+|.++|+++...+ ..++...++++||... +. .++.+|. |.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~----~k---- 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGC----PK---- 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccc----hH----
Confidence 678999999999999999999999999999999999998765 5677778899999653 32 2333331 10
Q ss_pred HHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q 048556 368 EIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI 447 (478)
Q Consensus 368 ~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 447 (478)
..+ ...++|+ .+|+++++|||++ .+.+...++....
T Consensus 183 -------~~~-----------------------------~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~ 218 (270)
T TIGR02858 183 -------AEG-----------------------------MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHA 218 (270)
T ss_pred -------HHH-----------------------------HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhC
Confidence 000 1445555 4999999999974 2334444444446
Q ss_pred CCeEEEEecCchh--h------------hhcCEEEEEeCC
Q 048556 448 NRTTVIVAHRLST--V------------RNADLIAVIHQG 473 (478)
Q Consensus 448 ~~t~i~itH~~~~--~------------~~~d~i~vl~~G 473 (478)
+.|+|++||+.+. + ..+||+++|++|
T Consensus 219 G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~ 258 (270)
T TIGR02858 219 GVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRR 258 (270)
T ss_pred CCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecC
Confidence 8899999998665 3 337999999865
No 417
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.8e-16 Score=158.13 Aligned_cols=203 Identities=27% Similarity=0.392 Sum_probs=132.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc--CCCCccEEEECCeecCCCCHHHh--
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGVNLKEFQLKWI-- 335 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~-- 335 (478)
+|.++|.+.+-.+ +..+-|-|+.|-.|..+++|||||-|||||++-|+.- --|..=.+++..+.+..-+...+
T Consensus 264 DIKiEnF~ISA~G---k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQG---KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeeccc---ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 4788888777643 4688999999999999999999999999999988753 22323334444433321111100
Q ss_pred -----hcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHH---HHHH-------hcHHHHHHhCCCCccccccCCC-CC
Q 048556 336 -----RGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMA---AAEL-------ANAAKFIDSLPQGLDTMVGEHG-TQ 399 (478)
Q Consensus 336 -----r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~---a~~~-------~~~~~~i~~lp~g~~t~~~~~g-~~ 399 (478)
.++...+-.+.. +...+.-|...+ .|++.+ .++. +.....+..| |++....+++ ..
T Consensus 341 vl~aD~kRl~lLeee~~-----L~~q~e~Gd~ta-aErl~~v~~ELraiGA~sAEarARRILAGL--GFskEMQ~rPt~k 412 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAK-----LMSQIEEGDTTA-AERLKEVADELRAIGADSAEARARRILAGL--GFSKEMQERPTTK 412 (807)
T ss_pred HHHhhHHHHHHHHHHHH-----HHHHHHcCchHH-HHHHHHHHHHHHHhccccchhHHHHHHhhc--CCChhHhcCCccc
Confidence 001111111110 111111111100 111111 1111 2223345555 7776666655 67
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556 400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475 (478)
Q Consensus 400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i 475 (478)
+|||=|.|++|||||+-.|-+|.|||||.+||.-..-.+-+.|..+ .+|.++|||+-.++.. |..|+.||+-++
T Consensus 413 FSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkL 487 (807)
T KOG0066|consen 413 FSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKL 487 (807)
T ss_pred cCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhh
Confidence 9999999999999999999999999999999998887777777664 4799999999999988 999999987654
No 418
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.65 E-value=3.3e-16 Score=184.18 Aligned_cols=118 Identities=24% Similarity=0.313 Sum_probs=104.3
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH------HHHHHHHHcCCCCEE
Q 048556 348 LFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ------RIAIARAILKDPRIL 421 (478)
Q Consensus 348 lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q------rl~lARall~~~~il 421 (478)
.|+||++|||.+ .|+++++ +.+++.++.++|+..+|.| +|.++..| .||||||| |++||||++.+|+++
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~il 1227 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGII 1227 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCEE
Confidence 599999999999 8887766 6888899999999999999 99998876 89999999 999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhc------CCCeEEEEecCchhhhh------cCEEEEE
Q 048556 422 LLDEATSALDAESERVVQEALDKIM------INRTTVIVAHRLSTVRN------ADLIAVI 470 (478)
Q Consensus 422 ilDEpts~LD~~~~~~i~~~l~~~~------~~~t~i~itH~~~~~~~------~d~i~vl 470 (478)
+|||||++||+.+...+.+.|..+. .+.|+|+|||++.++.. +|+.+-+
T Consensus 1228 ~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1228 ALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred EeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence 9999999999999999998887752 25799999999998763 4565544
No 419
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.65 E-value=3.2e-16 Score=147.73 Aligned_cols=139 Identities=19% Similarity=0.169 Sum_probs=97.6
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE-EEecCCCCCcccHH
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG-LVSQEPVLFTSSIK 354 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~ 354 (478)
.++.+|++|++++|+.++|+|||||||||+++.++++. +..++| +||-.. ..-++.
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~~ 72 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPIF 72 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccCh
Confidence 46899999999999999999999999999999998873 122222 222211 111455
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 048556 355 DNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434 (478)
Q Consensus 355 eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~ 434 (478)
|||...- +.+..+.++..++|+|++|+ ..+-++..+|++++||||++++|+..
T Consensus 73 d~I~~~~--------------------------~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~ 125 (204)
T cd03282 73 NRLLSRL--------------------------SNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSAD 125 (204)
T ss_pred hheeEec--------------------------CCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHH
Confidence 5553211 11122334557899999975 55566788999999999999999986
Q ss_pred HHHHHHH-HHHhc-CCCeEEEEecCchhhhhc
Q 048556 435 ERVVQEA-LDKIM-INRTTVIVAHRLSTVRNA 464 (478)
Q Consensus 435 ~~~i~~~-l~~~~-~~~t~i~itH~~~~~~~~ 464 (478)
...+... ++.+. .++++|++||+.+.++.+
T Consensus 126 ~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 126 GFAISLAILECLIKKESTVFFATHFRDIAAIL 157 (204)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 5554433 44443 478999999999887653
No 420
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.64 E-value=1.2e-15 Score=152.34 Aligned_cols=181 Identities=22% Similarity=0.393 Sum_probs=135.9
Q ss_pred EECCCCCCCcccccceeeecCCC-----EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEE
Q 048556 268 FSYPSRPGEQIFNGFSLSIPSGT-----TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342 (478)
Q Consensus 268 ~~y~~~~~~~~l~~is~~i~~G~-----~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 342 (478)
|.|++ .+..+.+..+.|+.|+ ++..+|+||.||||++++++|..+|++|. ++.. =+++|=
T Consensus 343 y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~-------lnVSyk 407 (592)
T KOG0063|consen 343 YSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPV-------LNVSYK 407 (592)
T ss_pred eccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------cccc-------cceecc
Confidence 56764 3467889999999886 78899999999999999999999998762 1112 247778
Q ss_pred ecCCC-CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEE
Q 048556 343 SQEPV-LFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRIL 421 (478)
Q Consensus 343 ~Q~~~-lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~il 421 (478)
||... =|.+|+|+-+. +.++.+.-.-.....+. -|-..+..+++...+|||||.||+|+|-+|=+.++++
T Consensus 408 pqkispK~~~tvR~ll~--------~kIr~ay~~pqF~~dvm-kpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvY 478 (592)
T KOG0063|consen 408 PQKISPKREGTVRQLLH--------TKIRDAYMHPQFVNDVM-KPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVY 478 (592)
T ss_pred ccccCccccchHHHHHH--------HHhHhhhcCHHHHHhhh-hhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceE
Confidence 88543 47889887663 22222211111111111 1334566677788999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEecCchhhhh-cCEEEEEeC
Q 048556 422 LLDEATSALDAESERVVQEALDKI--MINRTTVIVAHRLSTVRN-ADLIAVIHQ 472 (478)
Q Consensus 422 ilDEpts~LD~~~~~~i~~~l~~~--~~~~t~i~itH~~~~~~~-~d~i~vl~~ 472 (478)
+.|||.+-||.+.+..--..+++. ..++|-.+|-|++-..-. +||++|.+.
T Consensus 479 liDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 479 LIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred EecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 999999999999888777777775 357899999999877655 999999864
No 421
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.62 E-value=9.9e-16 Score=145.80 Aligned_cols=147 Identities=20% Similarity=0.237 Sum_probs=95.6
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHH
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIK 354 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 354 (478)
..+.+|++++.++ ++++|+|||||||||++|.+++..-. |+ .|.. .+.+ +..+++++| +|.. ++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~---vp~~--~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSF---VPAS--KAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCe---eccc--cceecceee---EeccCCch
Confidence 3578899999887 99999999999999999999875422 11 1111 1111 245666654 4443 566
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCC---CCC
Q 048556 355 DNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEA---TSA 429 (478)
Q Consensus 355 eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal--l~~~~ililDEp---ts~ 429 (478)
||+..+.. -=...+..+++++ ..+|++++|||| |++
T Consensus 84 ~~ls~g~s---------------------------------------~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~ 124 (216)
T cd03284 84 DDLAGGRS---------------------------------------TFMVEMVETANILNNATERSLVLLDEIGRGTST 124 (216)
T ss_pred hhhccCcc---------------------------------------hHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence 66654421 1111122333333 469999999999 888
Q ss_pred CCHHH-HHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEe
Q 048556 430 LDAES-ERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLV 476 (478)
Q Consensus 430 LD~~~-~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~ 476 (478)
+|... ...+.+.+.+. .++|+|++||+.+..+.+|++..+++|++.
T Consensus 125 lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~ 171 (216)
T cd03284 125 YDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVA 171 (216)
T ss_pred HHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEE
Confidence 89865 24455555442 368999999998776667877666666653
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.59 E-value=2.3e-15 Score=143.71 Aligned_cols=72 Identities=28% Similarity=0.417 Sum_probs=59.1
Q ss_pred CCChHHHHHHHHHHH----HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEE
Q 048556 399 QLSGGQKQRIAIARA----ILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVI 470 (478)
Q Consensus 399 ~LSgGq~Qrl~lARa----ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl 470 (478)
.||||||-+++||=- -+.++|++|||||.++||......+.+.|++..++.-+|++||+...+..||+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 899999999999843 356789999999999999999999999999988788899999999999999998876
No 423
>PRK00064 recF recombination protein F; Reviewed
Probab=99.58 E-value=4.8e-14 Score=144.37 Aligned_cols=76 Identities=26% Similarity=0.358 Sum_probs=66.3
Q ss_pred CCCChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh---cC
Q 048556 398 TQLSGGQKQRIAIARAIL---------KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN---AD 465 (478)
Q Consensus 398 ~~LSgGq~Qrl~lARall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~---~d 465 (478)
..+|.||+|++++|+++. ++|++++||||+++||+...+.+.+.+.+. ++.++++||+...+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 589999999999999885 899999999999999999999999988653 3588999998876544 46
Q ss_pred EEEEEeCCEE
Q 048556 466 LIAVIHQGKL 475 (478)
Q Consensus 466 ~i~vl~~G~i 475 (478)
+++.+++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 424
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.51 E-value=1.6e-14 Score=156.81 Aligned_cols=92 Identities=25% Similarity=0.428 Sum_probs=81.9
Q ss_pred HhCCCCccccccCCC------CCCChHHHHHHHHHHHHc----------CCCCEEEEeCCC-CCCCHHHHHHHHHHHHHh
Q 048556 383 DSLPQGLDTMVGEHG------TQLSGGQKQRIAIARAIL----------KDPRILLLDEAT-SALDAESERVVQEALDKI 445 (478)
Q Consensus 383 ~~lp~g~~t~~~~~g------~~LSgGq~Qrl~lARall----------~~~~ililDEpt-s~LD~~~~~~i~~~l~~~ 445 (478)
..+|+++++.+++.| ..|||||+||++||||++ .+|+++|||||| ++||+.+...+.+.|.++
T Consensus 446 ~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~ 525 (562)
T PHA02562 446 FTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL 525 (562)
T ss_pred EEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC
Confidence 356888888887777 789999999999999887 599999999998 789999999999999988
Q ss_pred cCCCeEEEEecCchhhhhcCEEEEEeC-CEE
Q 048556 446 MINRTTVIVAHRLSTVRNADLIAVIHQ-GKL 475 (478)
Q Consensus 446 ~~~~t~i~itH~~~~~~~~d~i~vl~~-G~i 475 (478)
++.|+|+|||++.....+|++++|++ |+.
T Consensus 526 -~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 526 -KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred -CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 67899999999988888999999986 543
No 425
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.50 E-value=4.8e-14 Score=131.08 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=52.7
Q ss_pred cCCCCCCChHHHHHHHHHHHHcC--CCCEEEEeCCCCCCCHHHHHHHHHH-HHHhc--CCCeEEEEecCchhhhhcCE
Q 048556 394 GEHGTQLSGGQKQRIAIARAILK--DPRILLLDEATSALDAESERVVQEA-LDKIM--INRTTVIVAHRLSTVRNADL 466 (478)
Q Consensus 394 ~~~g~~LSgGq~Qrl~lARall~--~~~ililDEpts~LD~~~~~~i~~~-l~~~~--~~~t~i~itH~~~~~~~~d~ 466 (478)
.++..+||+|++| +++++.. +|+++|+|||++++|+.....+... ++.+. .++++|++||+++..+.+|+
T Consensus 56 ~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 56 AQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred hccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 3445678888887 4454444 9999999999999999977776544 45443 26899999999987666764
No 426
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.49 E-value=6.5e-13 Score=138.13 Aligned_cols=171 Identities=19% Similarity=0.316 Sum_probs=119.6
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECC---eecCC-----CCHHHhhcceEEEecCCC
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---VNLKE-----FQLKWIRGKIGLVSQEPV 347 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g---~~~~~-----~~~~~~r~~i~~v~Q~~~ 347 (478)
..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.| .++.+ ++.+.+++.+.++.+...
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 4689999 99999999999999999999999999999999999999954 44443 455567888888876331
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcccccc-CCCCCCChHHHHH-HHHHHHHcCCCCEEEEeC
Q 048556 348 LFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVG-EHGTQLSGGQKQR-IAIARAILKDPRILLLDE 425 (478)
Q Consensus 348 lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~-~~g~~LSgGq~Qr-l~lARall~~~~ililDE 425 (478)
...++...+.-...+.|++... |.|-.+- +.-.++- |.|| +++ .+.+||
T Consensus 225 ----------------~~~~r~~~~~~a~~iAEyfr~~--g~~Vll~~Dsltr~A--~A~rEisl---~~ge~P------ 275 (438)
T PRK07721 225 ----------------PALMRIKGAYTATAIAEYFRDQ--GLNVMLMMDSVTRVA--MAQREIGL---AVGEPP------ 275 (438)
T ss_pred ----------------CHHHHHHHHHHHHHHHHHHHHC--CCcEEEEEeChHHHH--HHHHHHHH---hcCCCC------
Confidence 1123333333333345666542 5554332 2121111 1111 111 123333
Q ss_pred CCCCCCHHHHHHHHHHHHHhc---CCC-----eEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 426 ATSALDAESERVVQEALDKIM---INR-----TTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 426 pts~LD~~~~~~i~~~l~~~~---~~~-----t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
.|+|+|+.....+.+.+++.. ++. ||++.+|+++. ..||++.++.+|+|+.
T Consensus 276 ~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivl 334 (438)
T PRK07721 276 TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVL 334 (438)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEE
Confidence 479999999999999998875 354 99999999985 6699999999999975
No 427
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.49 E-value=1.9e-13 Score=129.91 Aligned_cols=134 Identities=15% Similarity=0.218 Sum_probs=89.3
Q ss_pred ccccceeeecCCCEEEEEcCCCCChHHHHHHHhc--cCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCc--ccH
Q 048556 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT--SSI 353 (478)
Q Consensus 278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g--~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~--~ti 353 (478)
+-+|+++.=..+.+++|+||||+|||||+|.+.. .. +..|...... .-.++|.+|...-+. +|+
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccCh
Confidence 4445554422237899999999999999999983 33 4556654311 234677777543221 122
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556 354 KDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433 (478)
Q Consensus 354 ~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~ 433 (478)
.+++ .| + .-+-||+++|++++.+|++++||||++++|+.
T Consensus 86 ~~~~--------------------------------S~--------f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 86 SSGQ--------------------------------SA--------F-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred hhcc--------------------------------ch--------H-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 2221 00 0 23559999999999999999999999999997
Q ss_pred HHHHH-HHHHHHhcC----CCeEEEEecCchhhhhc
Q 048556 434 SERVV-QEALDKIMI----NRTTVIVAHRLSTVRNA 464 (478)
Q Consensus 434 ~~~~i-~~~l~~~~~----~~t~i~itH~~~~~~~~ 464 (478)
....+ ...++.+.+ ..++|++||..+.++..
T Consensus 125 ~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 125 DGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 54444 455665532 24899999999987654
No 428
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.44 E-value=7.1e-13 Score=147.14 Aligned_cols=144 Identities=17% Similarity=0.227 Sum_probs=98.7
Q ss_pred cEEEEeEEEECCCCCCCcccc-----cceeeecCC-CEEEEEcCCCCChHHHHHHHhcc-CCCCccEEEECCeecCCCCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFN-----GFSLSIPSG-TTAALVGQSGSGKSTVISLIERF-YDPQAGEVLIDGVNLKEFQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~-----~is~~i~~G-~~~~ivG~sGsGKSTL~~ll~g~-~~~~~G~i~~~g~~~~~~~~ 332 (478)
.+.++++.. |.++ .+|+++.+| +.++|+||||+|||||+|++++. +.+..|-
T Consensus 295 ~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------- 353 (771)
T TIGR01069 295 KIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------- 353 (771)
T ss_pred CEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC-------------
Confidence 477766543 3443 378888887 89999999999999999999987 3444441
Q ss_pred HHhhcceEEEecCCC-CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 333 KWIRGKIGLVSQEPV-LFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~-lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
+||.... .+ .+.+++.. ...++ ..+.++..+||+|++|+..++
T Consensus 354 --------~Vpa~~~~~~--~~~d~i~~---~i~~~-----------------------~si~~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 354 --------PIPANEHSEI--PYFEEIFA---DIGDE-----------------------QSIEQNLSTFSGHMKNISAIL 397 (771)
T ss_pred --------CccCCccccc--cchhheee---ecChH-----------------------hHHhhhhhHHHHHHHHHHHHH
Confidence 3333321 01 11222210 01110 111233467999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhc-CCCeEEEEecCchhh
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQ-EALDKIM-INRTTVIVAHRLSTV 461 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~-~~l~~~~-~~~t~i~itH~~~~~ 461 (478)
+++ .+|+++|||||++++|+.....+. ..+..+. .++++|++||..+..
T Consensus 398 ~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 398 SKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred Hhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 887 789999999999999999988885 4455543 478999999998764
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.41 E-value=4.6e-13 Score=144.99 Aligned_cols=77 Identities=18% Similarity=0.294 Sum_probs=71.7
Q ss_pred CCCChHHHHHHHHHHHHcCC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556 398 TQLSGGQKQRIAIARAILKD----PRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473 (478)
Q Consensus 398 ~~LSgGq~Qrl~lARall~~----~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G 473 (478)
..+||||+||++|||+++.. |+++||||||++||+.+...+.+.|+++.+++|||+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 57899999999999999985 69999999999999999999999999987789999999999999889999999876
Q ss_pred E
Q 048556 474 K 474 (478)
Q Consensus 474 ~ 474 (478)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 3
No 430
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.41 E-value=3.1e-13 Score=128.51 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHhc
Q 048556 403 GQKQRIAIARAILKDPRILLLDEAT-----SALDAESERVVQEALDKIM 446 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpt-----s~LD~~~~~~i~~~l~~~~ 446 (478)
-|+++..|||+++.+|+++++|||| ++||+.+.+.+.+.++++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999998864
No 431
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.39 E-value=6.5e-13 Score=132.91 Aligned_cols=170 Identities=25% Similarity=0.396 Sum_probs=117.6
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC----CCHHHhhc--------------ceEEEecCCCC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE----FQLKWIRG--------------KIGLVSQEPVL 348 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~----~~~~~~r~--------------~i~~v~Q~~~l 348 (478)
+||+..++||.+|-||||-++.++|-.+|.-|.- -++-+..+ ....++.. ..-||.|-|..
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 6899999999999999999999999999987753 12222111 11111111 01233333333
Q ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 048556 349 FTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428 (478)
Q Consensus 349 f~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts 428 (478)
..+++.+++.--.+..+.++ .+..+ -++..+......||||+-||.++|.+.+.+++++++|||.|
T Consensus 177 ~k~~v~~~l~~~~~r~~~~~------------~~~~~--~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSs 242 (592)
T KOG0063|consen 177 VKGTVGSLLDRKDERDNKEE------------VCDQL--DLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSS 242 (592)
T ss_pred HHHHHHHHHHHHhhcccHHH------------HHHHH--HHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcc
Confidence 34455555432111111122 22222 23344445567899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEe
Q 048556 429 ALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIH 471 (478)
Q Consensus 429 ~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~ 471 (478)
.||.+.+.+-...|+.+. .++-+|+|-|+++.+.. .|-|-.+-
T Consensus 243 YLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 243 YLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred cchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 999999988888888875 57899999999999987 78887663
No 432
>PRK10869 recombination and repair protein; Provisional
Probab=99.38 E-value=1.8e-12 Score=139.50 Aligned_cols=76 Identities=20% Similarity=0.285 Sum_probs=70.6
Q ss_pred CCCChHHHHHHHHHHHHcC----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556 398 TQLSGGQKQRIAIARAILK----DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473 (478)
Q Consensus 398 ~~LSgGq~Qrl~lARall~----~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G 473 (478)
..+||||+||++|||+++. +|+++|||||+++||..+...+.+.|+++.+++|+|+|||++..+..||+.++++++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 3579999999999999996 589999999999999999999999999987789999999999999889999999874
No 433
>PRK14079 recF recombination protein F; Provisional
Probab=99.34 E-value=1.7e-11 Score=125.02 Aligned_cols=74 Identities=20% Similarity=0.270 Sum_probs=60.8
Q ss_pred CCCChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEE
Q 048556 398 TQLSGGQKQRIAIARAIL---------KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIA 468 (478)
Q Consensus 398 ~~LSgGq~Qrl~lARall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~ 468 (478)
..+|+||++++++|+.|. .+|++++||||||.||......+.+.|.... .++|..|+ .-.-+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~---~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE---APPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC---CCCCCceEE
Confidence 468999999999999998 8999999999999999999999999886532 34444443 223489999
Q ss_pred EEeCCEEe
Q 048556 469 VIHQGKLV 476 (478)
Q Consensus 469 vl~~G~i~ 476 (478)
.+++|++.
T Consensus 337 ~~~~~~~~ 344 (349)
T PRK14079 337 RIEAGVFT 344 (349)
T ss_pred EEeccEec
Confidence 99999874
No 434
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.34 E-value=1.6e-11 Score=125.83 Aligned_cols=63 Identities=29% Similarity=0.425 Sum_probs=56.9
Q ss_pred CCCChHHHHHHHHHHHHcC---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhh
Q 048556 398 TQLSGGQKQRIAIARAILK---------DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVR 462 (478)
Q Consensus 398 ~~LSgGq~Qrl~lARall~---------~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 462 (478)
..+|.||+++++||.+|+. +|+|++||||+|+||+...+.+.+.|... +.+++++||++..+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4789999999999999999 99999999999999999999999999753 569999999987654
No 435
>PRK13695 putative NTPase; Provisional
Probab=99.31 E-value=1.8e-12 Score=119.25 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=63.7
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeC
Q 048556 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDE--ATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQ 472 (478)
Q Consensus 395 ~~g~~LSgGq~Qrl~lARall~~~~ililDE--pts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~ 472 (478)
.....+||+++-+..+++..+.+|+++++|| |+.++|....+.+.+.+ ..++++|+++|+-.....+|+|..+.+
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCC
Confidence 3345699999999999999999999999999 55566655554554444 246899999999666667999999999
Q ss_pred CEEee
Q 048556 473 GKLVE 477 (478)
Q Consensus 473 G~i~~ 477 (478)
|++.+
T Consensus 151 ~~i~~ 155 (174)
T PRK13695 151 GRVYE 155 (174)
T ss_pred cEEEE
Confidence 99865
No 436
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.30 E-value=6.8e-12 Score=119.67 Aligned_cols=137 Identities=16% Similarity=0.188 Sum_probs=84.7
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhc-cCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cH
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SI 353 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g-~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 353 (478)
..+.+|+++++++|++++|.||||+||||+++.+++ .+.++.|..... .. -.++|.+| +|.. ..
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a-~~----------~~~~~~~~---i~~~~~~ 83 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA-SS----------ATLSIFDS---VLTRMGA 83 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc-Cc----------eEEeccce---EEEEecC
Confidence 468899999999999999999999999999999999 677888875432 11 12333333 2210 11
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556 354 KDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433 (478)
Q Consensus 354 ~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~ 433 (478)
.|++.-+.. + ++ .|-+|++-+-.-..+|+++|||||.++.|+.
T Consensus 84 ~d~~~~~~S--t----------------------------------F~-~e~~~~~~il~~~~~~sLvllDE~~~gT~~~ 126 (222)
T cd03287 84 SDSIQHGMS--T----------------------------------FM-VELSETSHILSNCTSRSLVILDELGRGTSTH 126 (222)
T ss_pred ccccccccc--h----------------------------------HH-HHHHHHHHHHHhCCCCeEEEEccCCCCCChh
Confidence 222211110 0 00 1111221111223579999999998887766
Q ss_pred HHHHH-HHHHHHhc--CCCeEEEEecCchhhhh
Q 048556 434 SERVV-QEALDKIM--INRTTVIVAHRLSTVRN 463 (478)
Q Consensus 434 ~~~~i-~~~l~~~~--~~~t~i~itH~~~~~~~ 463 (478)
....+ ...++.+. .++|+|++||+.+..+.
T Consensus 127 d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 127 DGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred hHHHHHHHHHHHHHhccCCeEEEEcccHHHHHH
Confidence 55543 23333333 36799999999887543
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.28 E-value=7.6e-12 Score=139.32 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=59.9
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhc-CCCeEEEEecCchhhhh-cCEEEE
Q 048556 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA-LDKIM-INRTTVIVAHRLSTVRN-ADLIAV 469 (478)
Q Consensus 395 ~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~-l~~~~-~~~t~i~itH~~~~~~~-~d~i~v 469 (478)
.+..+||+|++|+..++|++ .+|+++|||||++|+|+.....+... +..+. .++++|++||..+.... +|+..+
T Consensus 386 ~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 386 QSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV 462 (782)
T ss_pred hchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe
Confidence 44578999999999999999 88999999999999999988887654 44443 46899999999887665 444433
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.28 E-value=5.4e-11 Score=114.42 Aligned_cols=157 Identities=16% Similarity=0.234 Sum_probs=89.8
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHH-HHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTV-ISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL-~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
+.+++++..+++ .+++|+.+.|.||+||||||| ++.+.++.++....+++... .+.++
T Consensus 8 ~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e----~~~~~----- 66 (230)
T PRK08533 8 LSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ----LTTTE----- 66 (230)
T ss_pred EEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----CCHHH-----
Confidence 556666655532 379999999999999999999 69999887654333333211 11111
Q ss_pred EEEecCCCCCcccHHHHH-hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc---
Q 048556 340 GLVSQEPVLFTSSIKDNI-NYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL--- 415 (478)
Q Consensus 340 ~~v~Q~~~lf~~ti~eNl-~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall--- 415 (478)
+.++. .+|.+ .++ .+.. ..+. .+.- ...+|+++.++-.+++.+-
T Consensus 67 -------------~~~~~~~~g~~---~~~------------~~~~--~~l~-~~~~-~~~~~~~~~~~~~l~~il~~~~ 114 (230)
T PRK08533 67 -------------FIKQMMSLGYD---INK------------KLIS--GKLL-YIPV-YPLLSGNSEKRKFLKKLMNTRR 114 (230)
T ss_pred -------------HHHHHHHhCCc---hHH------------Hhhc--CcEE-EEEe-cccccChHHHHHHHHHHHHHHH
Confidence 11121 11110 000 1000 0000 0000 0235666555544444332
Q ss_pred -CCCCEEEEeCCCCCC----CHHHHHHHHHHHHHhcC-CCeEEEEecCchh--------hhh-cCEEEEEe
Q 048556 416 -KDPRILLLDEATSAL----DAESERVVQEALDKIMI-NRTTVIVAHRLST--------VRN-ADLIAVIH 471 (478)
Q Consensus 416 -~~~~ililDEpts~L----D~~~~~~i~~~l~~~~~-~~t~i~itH~~~~--------~~~-~d~i~vl~ 471 (478)
.+|+++++||||+.+ |+...+.+.+.++.+.+ ++|+ ++||+... ++. ||-|+.|+
T Consensus 115 ~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 115 FYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred hcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 369999999999999 77777888888887754 5555 45666443 233 67788776
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.24 E-value=4.5e-11 Score=110.70 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=64.2
Q ss_pred CccccccCCCCCCChHHHH------HHHHHHHHcCCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhc-CCCeEEEEecC
Q 048556 388 GLDTMVGEHGTQLSGGQKQ------RIAIARAILKDPRILLLDEATSALD---AESERVVQEALDKIM-INRTTVIVAHR 457 (478)
Q Consensus 388 g~~t~~~~~g~~LSgGq~Q------rl~lARall~~~~ililDEpts~LD---~~~~~~i~~~l~~~~-~~~t~i~itH~ 457 (478)
|...........+|+||+| ....+.+.-.+|+++++||||+.+| ......+.+.++.+. .+.|+|+++|.
T Consensus 60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444556667789999998 4444444556899999999999999 777777777776654 46899999998
Q ss_pred chh---------hhh-cCEEEEEe
Q 048556 458 LST---------VRN-ADLIAVIH 471 (478)
Q Consensus 458 ~~~---------~~~-~d~i~vl~ 471 (478)
... ++. ||.|+.|+
T Consensus 140 ~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 140 SGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred ccCCCcccCcCceeEeeeEEEEEE
Confidence 764 445 89999886
No 440
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.21 E-value=3.3e-11 Score=139.48 Aligned_cols=78 Identities=23% Similarity=0.217 Sum_probs=70.7
Q ss_pred CCCCCChHHHHHHHHHHHHcC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-
Q 048556 396 HGTQLSGGQKQRIAIARAILK----------DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN- 463 (478)
Q Consensus 396 ~g~~LSgGq~Qrl~lARall~----------~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~- 463 (478)
...+|||||++|++||+||.. +|++|||||||++||+.+...+++.|.++. .+++|++|||.+.....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhh
Confidence 458999999999999999985 799999999999999999999999998875 47899999999998776
Q ss_pred cCEEEEEeCC
Q 048556 464 ADLIAVIHQG 473 (478)
Q Consensus 464 ~d~i~vl~~G 473 (478)
+|+|.|+..|
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 8999999653
No 441
>PRK01156 chromosome segregation protein; Provisional
Probab=99.19 E-value=5.5e-11 Score=135.94 Aligned_cols=76 Identities=22% Similarity=0.393 Sum_probs=67.3
Q ss_pred CCCCCChHHHHHHHH------HHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C--C-CeEEEEecCchhhhhcC
Q 048556 396 HGTQLSGGQKQRIAI------ARAILKDPRILLLDEATSALDAESERVVQEALDKIM-I--N-RTTVIVAHRLSTVRNAD 465 (478)
Q Consensus 396 ~g~~LSgGq~Qrl~l------ARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~--~-~t~i~itH~~~~~~~~d 465 (478)
.+..|||||+||++| ||+++.+|++++|||||++||+.....+.+.+.... . + .|+|+|||++..+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 599999999999999999999999999999886432 2 2 48999999999998899
Q ss_pred EEEEEe
Q 048556 466 LIAVIH 471 (478)
Q Consensus 466 ~i~vl~ 471 (478)
+++.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 442
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.18 E-value=5.8e-11 Score=119.20 Aligned_cols=133 Identities=15% Similarity=0.191 Sum_probs=88.6
Q ss_pred ceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCC
Q 048556 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK 361 (478)
Q Consensus 282 is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~ 361 (478)
+++.+++|+.++|+||+|||||||+++|+++++|..|.+.+. +..++.... ++.+.++.+... -+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~-----------~~~ 202 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGG-----------QGL 202 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCC-----------CCc
Confidence 557789999999999999999999999999999998988875 333332221 222222222100 000
Q ss_pred CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHH
Q 048556 362 DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEA 441 (478)
Q Consensus 362 ~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~ 441 (478)
+..+. .-.++++|-.+|+++++|||.+ .+.++.
T Consensus 203 ~~~~~----------------------------------------~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~ 235 (308)
T TIGR02788 203 AKVTP----------------------------------------KDLLQSCLRMRPDRIILGELRG-------DEAFDF 235 (308)
T ss_pred CccCH----------------------------------------HHHHHHHhcCCCCeEEEeccCC-------HHHHHH
Confidence 11111 1235557778999999999996 233455
Q ss_pred HHHhcC-CCeEEEEecCchhhhhcCEEEEEeCCEE
Q 048556 442 LDKIMI-NRTTVIVAHRLSTVRNADLIAVIHQGKL 475 (478)
Q Consensus 442 l~~~~~-~~t~i~itH~~~~~~~~d~i~vl~~G~i 475 (478)
++.... +.+++.++|..+.....||+..|..|++
T Consensus 236 l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~ 270 (308)
T TIGR02788 236 IRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQ 270 (308)
T ss_pred HHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccc
Confidence 555443 4467999999997777888887766654
No 443
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.17 E-value=1.5e-11 Score=126.90 Aligned_cols=66 Identities=23% Similarity=0.306 Sum_probs=55.8
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc-EEEECCeecCCCCHHHhhcceEEEecC
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGVNLKEFQLKWIRGKIGLVSQE 345 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~ 345 (478)
.+|+++|+++++||+++|+||||||||||++ +|+.+|++| +|.++|.++...+..++... -+|+|+
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~L-R~VFQ~ 86 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETL-DEIFDG 86 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHH-HHHHHh
Confidence 5899999999999999999999999999999 788888888 79999999987665543221 177774
No 444
>PRK03918 chromosome segregation protein; Provisional
Probab=99.17 E-value=6.2e-11 Score=135.40 Aligned_cols=75 Identities=28% Similarity=0.411 Sum_probs=67.0
Q ss_pred CCCCChHHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhhcCEEEE
Q 048556 397 GTQLSGGQKQ------RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRNADLIAV 469 (478)
Q Consensus 397 g~~LSgGq~Q------rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~v 469 (478)
...|||||+| |+||||+++.+|+++||||||++||+.....+.+.|..+.. +.|+|+|||++.....||++++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~ 865 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIR 865 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEE
Confidence 4689999999 56666789999999999999999999999999999987643 5799999999998888999999
Q ss_pred Ee
Q 048556 470 IH 471 (478)
Q Consensus 470 l~ 471 (478)
|+
T Consensus 866 l~ 867 (880)
T PRK03918 866 VS 867 (880)
T ss_pred EE
Confidence 97
No 445
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.13 E-value=6.9e-11 Score=138.60 Aligned_cols=76 Identities=25% Similarity=0.341 Sum_probs=69.0
Q ss_pred CCCCCCChHHHHHHHHHHHH----cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEE
Q 048556 395 EHGTQLSGGQKQRIAIARAI----LKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVI 470 (478)
Q Consensus 395 ~~g~~LSgGq~Qrl~lARal----l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl 470 (478)
..+..|||||+||++|||++ +++|+++||||||++||+.+...+.+.|+.+.++.++|+|||+++.+..||+++.+
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 34578999999999999998 47789999999999999999999999999887778999999999999889999755
No 446
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.12 E-value=1.3e-10 Score=111.15 Aligned_cols=64 Identities=27% Similarity=0.402 Sum_probs=53.5
Q ss_pred CCCChHHHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhh
Q 048556 398 TQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTV 461 (478)
Q Consensus 398 ~~LSgGq~Qrl~lARall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~ 461 (478)
..+|.|++|.+.++-+++..+ .++++|||-++|+|...+.+.+.|....+ +.-+|++||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 456999999999999888876 89999999999999999999999988765 67899999998765
No 447
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.12 E-value=4.7e-10 Score=106.75 Aligned_cols=137 Identities=20% Similarity=0.203 Sum_probs=84.5
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC-ccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cH
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SI 353 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 353 (478)
..+-+|++|++++|++++|.||||+||||+++.+....-.. -|-- + + .+ ...+.++ ..+|.. ..
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~-v---p-----a~--~~~i~~~---~~i~~~~~~ 82 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMD-V---P-----AK--SMRLSLV---DRIFTRIGA 82 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCc-c---C-----cc--ccEeccc---cEEEEecCc
Confidence 46889999999999999999999999999999998653211 1210 0 0 00 0111111 112221 22
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556 354 KDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433 (478)
Q Consensus 354 ~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~ 433 (478)
.||+..+.. +.. .|-++++-.-....+|++++||||++|+|+.
T Consensus 83 ~d~~~~~~S--tF~-----------------------------------~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~ 125 (218)
T cd03286 83 RDDIMKGES--TFM-----------------------------------VELSETANILRHATPDSLVILDELGRGTSTH 125 (218)
T ss_pred ccccccCcc--hHH-----------------------------------HHHHHHHHHHHhCCCCeEEEEecccCCCCch
Confidence 333332211 110 1112221111223578999999999999999
Q ss_pred HHHHHHHH-HHHhcC--CCeEEEEecCchhhhh
Q 048556 434 SERVVQEA-LDKIMI--NRTTVIVAHRLSTVRN 463 (478)
Q Consensus 434 ~~~~i~~~-l~~~~~--~~t~i~itH~~~~~~~ 463 (478)
....+... ++.+.+ ++++|++||.++....
T Consensus 126 dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 126 DGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 88877777 555543 7899999999987655
No 448
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.11 E-value=3.1e-10 Score=117.40 Aligned_cols=163 Identities=19% Similarity=0.234 Sum_probs=114.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++.++++..|.. +..+++++ |++.+||+++|+|++|+|||||++.|+|..+|+.|.|.+.|..-.
T Consensus 130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~----------- 195 (432)
T PRK06793 130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR----------- 195 (432)
T ss_pred chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc-----------
Confidence 3566777777752 35678875 999999999999999999999999999999999888766554321
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc----
Q 048556 340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL---- 415 (478)
Q Consensus 340 ~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall---- 415 (478)
+++|.+.. .+...+++ .+.+=....+-|.|+|+|.+.+.+.+
T Consensus 196 ------------ev~e~~~~------------~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf 241 (432)
T PRK06793 196 ------------EVKDFIRK------------ELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYF 241 (432)
T ss_pred ------------cHHHHHHH------------Hhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 22222210 01111110 12222445778999999999999887
Q ss_pred ---CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 048556 416 ---KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKL 475 (478)
Q Consensus 416 ---~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i 475 (478)
.++-++++||||...|+. ++|...+.+.. .+.+..+.||-...++.+-+ .++|.|
T Consensus 242 r~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSi 300 (432)
T PRK06793 242 RDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSI 300 (432)
T ss_pred HHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcce
Confidence 788899999999999997 55655665544 35677777886556666544 356765
No 449
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.10 E-value=1.7e-11 Score=134.50 Aligned_cols=174 Identities=13% Similarity=0.109 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 106 TKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKY-----NESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYS 180 (478)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (478)
++.............+.+.|.+.++.+||..+.+.....+| .+...+..+...+..........+...+......
T Consensus 29 ~~~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~ 108 (644)
T PRK10733 29 GRKVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFP 108 (644)
T ss_pred cccCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHH
Confidence 33344444444556778888899999999999888776666 4555555554444444434444444555566677
Q ss_pred HHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccCCCCCCccCCC
Q 048556 181 LAIWFGGKMILEKGYKGG---DVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDI 257 (478)
Q Consensus 181 ~~l~~g~~lv~~g~ls~G---~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 257 (478)
+++|+|++++..|.++.| .++++..+......+ ..+...+..+.....+.+|+.++++...+. .
T Consensus 109 ~il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~---~--------- 175 (644)
T PRK10733 109 MLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREP---S--------- 175 (644)
T ss_pred HHHHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCH---H---------
Confidence 888899999999999988 555554333333333 344445556666666777777766532110 0
Q ss_pred CccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 258 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
..+++...+++| +.|+||+|+||||+++.+++...
T Consensus 176 --------------------~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 176 --------------------RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred --------------------HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 001122255666 99999999999999999988653
No 450
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.09 E-value=9.6e-10 Score=98.57 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=79.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHH
Q 048556 291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIM 370 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~ 370 (478)
+++|.||+|+||||+++.+++...+..|.+.+. +.+...- ...++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~-------------------~~e~~~~--~~~~~~~~~---------- 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYV-------------------DIEEEIE--ELTERLIGE---------- 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEE-------------------ECCcchH--HHHHHHhhh----------
Confidence 368999999999999999999887765665443 3222100 011111000
Q ss_pred HHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCC----------CHHHHHHHHH
Q 048556 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL----------DAESERVVQE 440 (478)
Q Consensus 371 ~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~L----------D~~~~~~i~~ 440 (478)
.. ...+++ ...+.......+.++.++++.+++...+|+++++||+++-+ |....+.+.+
T Consensus 50 --------~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (165)
T cd01120 50 --------SL--KGALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRE 118 (165)
T ss_pred --------hh--cccccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 00 000111 12222333344566667888999999999999999999544 4444556655
Q ss_pred HHHHhc-CCCeEEEEecCchhh
Q 048556 441 ALDKIM-INRTTVIVAHRLSTV 461 (478)
Q Consensus 441 ~l~~~~-~~~t~i~itH~~~~~ 461 (478)
...... .+.|+++++|.....
T Consensus 119 l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 119 LLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHhcCCceEEEEEecCCcc
Confidence 555544 378999999987543
No 451
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.07 E-value=1.6e-09 Score=121.90 Aligned_cols=63 Identities=19% Similarity=0.255 Sum_probs=54.9
Q ss_pred HcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCCeEEEEecCchhh----------hhcCEEEEEeCCEEe
Q 048556 414 ILKDPRILLLDEATSAL-DAESERVVQEALDKIM-INRTTVIVAHRLSTV----------RNADLIAVIHQGKLV 476 (478)
Q Consensus 414 ll~~~~ililDEpts~L-D~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~----------~~~d~i~vl~~G~i~ 476 (478)
+..+|+++++|||+.+| |+...+.+.+.+++.+ .+.+++++||+++.+ +.||+.++|.+|++.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~ 723 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAR 723 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCcccc
Confidence 35799999999999999 6899999999998875 478999999999876 469999999999864
No 452
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.07 E-value=3.3e-10 Score=106.48 Aligned_cols=119 Identities=23% Similarity=0.339 Sum_probs=76.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCC-ccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHH
Q 048556 291 TAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEI 369 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~ 369 (478)
.+.|+||+||||||+++.+++.+.+. .|.|.....++. +... ...+++.|..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E-~~~~---~~~~~i~q~~----------------------- 55 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIE-FVHE---SKRSLINQRE----------------------- 55 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcc-cccc---Cccceeeecc-----------------------
Confidence 68899999999999999999888754 567655443331 1100 0111222210
Q ss_pred HHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCC
Q 048556 370 MAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINR 449 (478)
Q Consensus 370 ~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~ 449 (478)
+|.....++. ++++++..+|+++++|||. |.++...+.+ ....+.
T Consensus 56 -----------------------vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~---~a~~G~ 100 (198)
T cd01131 56 -----------------------VGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALT---AAETGH 100 (198)
T ss_pred -----------------------cCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH---HHHcCC
Confidence 1111111211 4788999999999999996 6555443333 334578
Q ss_pred eEEEEecCchhhhhcCEEEEEe
Q 048556 450 TTVIVAHRLSTVRNADLIAVIH 471 (478)
Q Consensus 450 t~i~itH~~~~~~~~d~i~vl~ 471 (478)
+++.++|..+.....||++.+-
T Consensus 101 ~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 101 LVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred EEEEEecCCcHHHHHhHHHhhc
Confidence 8999999999887788887663
No 453
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.05 E-value=3.4e-10 Score=132.81 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=69.2
Q ss_pred CCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeC
Q 048556 397 GTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQ 472 (478)
Q Consensus 397 g~~LSgGq~Qrl~lARall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~ 472 (478)
...||||||++++||++++ .+||++||||||++||+.....+.+.|.....+.++|+|||+...+..||+++.+..
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 3589999999999999997 478999999999999999999999999988777889999999999988999987743
No 454
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.01 E-value=1.2e-08 Score=88.24 Aligned_cols=117 Identities=34% Similarity=0.437 Sum_probs=82.9
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCCCCc-cEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCH
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASI 366 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~-G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~ 366 (478)
+|..+.|+||+||||||+++.+++...... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999987754 4555555443222211111
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH------
Q 048556 367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE------ 440 (478)
Q Consensus 367 ~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~------ 440 (478)
............+++.++..+++|-..+|+++++||+..-.+.........
T Consensus 51 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 -----------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred -----------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 112223456678888899999999988899999999999999998776654
Q ss_pred -HHHHhcCCCeEEEEecC
Q 048556 441 -ALDKIMINRTTVIVAHR 457 (478)
Q Consensus 441 -~l~~~~~~~t~i~itH~ 457 (478)
..........+|.++|.
T Consensus 108 ~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 108 LLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHHHhcCCCEEEEEeCC
Confidence 22222346778888883
No 455
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.99 E-value=1.2e-09 Score=126.30 Aligned_cols=78 Identities=26% Similarity=0.297 Sum_probs=68.3
Q ss_pred CCCCCCChHHHHHHHHHHHHcC--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-c
Q 048556 395 EHGTQLSGGQKQRIAIARAILK--------DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-A 464 (478)
Q Consensus 395 ~~g~~LSgGq~Qrl~lARall~--------~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~ 464 (478)
....+|||||+|+++|||||.. +|++++|||||++||+.+...+++.|..+. .++||++|||....... .
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 4568999999999999999995 899999999999999999999999998885 57899999997777666 5
Q ss_pred CEEEEEeC
Q 048556 465 DLIAVIHQ 472 (478)
Q Consensus 465 d~i~vl~~ 472 (478)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 67777654
No 456
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.99 E-value=3.1e-09 Score=96.23 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=64.7
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556 398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475 (478)
Q Consensus 398 ~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i 475 (478)
..-|.||-=.--+.|.+ ++.-++|||||-|+|.+.-+-.+...|+++. .+.-+|++||.+-.+.. --+|+-++.+.+
T Consensus 128 h~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 128 HHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred hhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc
Confidence 56789988777777776 4667999999999999999999999998875 46789999999987766 578888888765
Q ss_pred e
Q 048556 476 V 476 (478)
Q Consensus 476 ~ 476 (478)
.
T Consensus 207 ~ 207 (233)
T COG3910 207 E 207 (233)
T ss_pred c
Confidence 3
No 457
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.98 E-value=9.3e-09 Score=99.12 Aligned_cols=148 Identities=16% Similarity=0.227 Sum_probs=88.3
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhc-cCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHh-cCCC
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNIN-YGKD 362 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g-~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~-~~~~ 362 (478)
-+++|..+.|.|++|||||||...++- ... ..+. +.|+..+.. ...+.+|+. ++-+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~-------------------~~y~~~e~~--~~~~~~~~~~~g~~ 78 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKK-------------------VYVITTENT--SKSYLKQMESVKID 78 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCE-------------------EEEEEcCCC--HHHHHHHHHHCCCC
Confidence 589999999999999999999998852 222 2223 334443221 112222222 1111
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCcccccc---CCCCCCChHHHHHHHHHHHHcC--CCCEEEEeCCCCCC---CHHH
Q 048556 363 GASIAEIMAAAELANAAKFIDSLPQGLDTMVG---EHGTQLSGGQKQRIAIARAILK--DPRILLLDEATSAL---DAES 434 (478)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~---~~g~~LSgGq~Qrl~lARall~--~~~ililDEpts~L---D~~~ 434 (478)
.++ ++. .|+-..+. +.....|.++++.+..++..+. +|+++++||||+.+ |...
T Consensus 79 ---~~~------------~~~---~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~ 140 (234)
T PRK06067 79 ---ISD------------FFL---WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDD 140 (234)
T ss_pred ---hhH------------HHh---CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHH
Confidence 101 100 01111100 1223456788999999999998 89999999999654 4444
Q ss_pred HHHHHHHHHHhc-CCCeEEEEecCchh-------hhh-cCEEEEEeC
Q 048556 435 ERVVQEALDKIM-INRTTVIVAHRLST-------VRN-ADLIAVIHQ 472 (478)
Q Consensus 435 ~~~i~~~l~~~~-~~~t~i~itH~~~~-------~~~-~d~i~vl~~ 472 (478)
...+.+.++.+. .++|+++++|.... +.. +|-++.|+.
T Consensus 141 ~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 141 ILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 455555555433 46899999997653 333 677777763
No 458
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.96 E-value=4.7e-09 Score=113.11 Aligned_cols=83 Identities=31% Similarity=0.477 Sum_probs=72.9
Q ss_pred Ccccc-ccCCCCCCChHHHHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh
Q 048556 388 GLDTM-VGEHGTQLSGGQKQRIAIARAILKD--PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN 463 (478)
Q Consensus 388 g~~t~-~~~~g~~LSgGq~Qrl~lARall~~--~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ 463 (478)
|++.. +.....+|||||.|||-||..+=.. -=+++||||+.||-+..-+++++.|++++ .++|+|+|.|+.++++.
T Consensus 469 GL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~ 548 (935)
T COG0178 469 GLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRA 548 (935)
T ss_pred CcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhh
Confidence 55542 3566789999999999999999665 35789999999999999999999999987 48999999999999999
Q ss_pred cCEEEEE
Q 048556 464 ADLIAVI 470 (478)
Q Consensus 464 ~d~i~vl 470 (478)
||+|+-|
T Consensus 549 AD~iIDi 555 (935)
T COG0178 549 ADHIIDI 555 (935)
T ss_pred cCEEEee
Confidence 9999988
No 459
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.95 E-value=1.9e-09 Score=109.86 Aligned_cols=83 Identities=11% Similarity=0.219 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHccCCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccc-----------cceeeecCCCEEEE
Q 048556 226 AGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFN-----------GFSLSIPSGTTAAL 294 (478)
Q Consensus 226 ~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~-----------~is~~i~~G~~~~i 294 (478)
+...+.+|++++++.++... ..+....+.++|+||+|.||+ ++++|+ |+++.|.+||.++|
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~------~~~e~~~~ri~Fe~LTf~YP~--er~~Le~~~~~~~~R~id~~~pig~Gq~~~I 173 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNG------DDPEKAKNRVLFENLTPLYPN--ERLRLETSTEDLSTRVLDLFAPIGKGQRGLI 173 (415)
T ss_pred eccccHhHHHHHhCCCccCC------CCccccCCCeEEEEeeecCCC--ccceeecCccccceeeeeeEEEeCCCCEEEE
Confidence 34567899999998765421 112233467999999999985 347896 99999999999999
Q ss_pred EcCCCCChHHHHHHHhccCCCC
Q 048556 295 VGQSGSGKSTVISLIERFYDPQ 316 (478)
Q Consensus 295 vG~sGsGKSTL~~ll~g~~~~~ 316 (478)
+||+|||||||++.+.+.+...
T Consensus 174 vG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 174 VAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred ECCCCCChhHHHHHHHHhhccc
Confidence 9999999999999999988643
No 460
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.93 E-value=9.7e-10 Score=103.59 Aligned_cols=69 Identities=28% Similarity=0.380 Sum_probs=57.9
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCC------------CCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHH
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYD------------PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIK 354 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 354 (478)
++|++++|+||||||||||++.|++.++ |..|+ ++|.+...++.+++++. +.++.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 5899999999999999999999999985 77888 68999888888888774 4577778888888
Q ss_pred HHHhcCC
Q 048556 355 DNINYGK 361 (478)
Q Consensus 355 eNl~~~~ 361 (478)
+|. ++.
T Consensus 78 ~~~-y~~ 83 (205)
T PRK00300 78 GNY-YGT 83 (205)
T ss_pred Ccc-ccC
Confidence 883 543
No 461
>PRK02224 chromosome segregation protein; Provisional
Probab=98.91 E-value=2.5e-09 Score=122.22 Aligned_cols=76 Identities=30% Similarity=0.415 Sum_probs=66.7
Q ss_pred CCCCChHHHH------HHHHHHHHcCC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEecCchhhh
Q 048556 397 GTQLSGGQKQ------RIAIARAILKD-----P-RILLLDEATSALDAESERVVQEALDKIMI-N-RTTVIVAHRLSTVR 462 (478)
Q Consensus 397 g~~LSgGq~Q------rl~lARall~~-----~-~ililDEpts~LD~~~~~~i~~~l~~~~~-~-~t~i~itH~~~~~~ 462 (478)
...|||||+| |+++||++..+ | +++||||||++||+.....+.+.|..+.. + .++|+|||++..+.
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~ 858 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVG 858 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHH
Confidence 3589999999 99999999863 2 67999999999999999999999988753 3 47999999999998
Q ss_pred hcCEEEEEeC
Q 048556 463 NADLIAVIHQ 472 (478)
Q Consensus 463 ~~d~i~vl~~ 472 (478)
.||+++++..
T Consensus 859 ~ad~~~~~~~ 868 (880)
T PRK02224 859 AADDLVRVEK 868 (880)
T ss_pred hcCeeEEeec
Confidence 9999999964
No 462
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.87 E-value=1e-08 Score=106.33 Aligned_cols=86 Identities=16% Similarity=0.296 Sum_probs=71.2
Q ss_pred CccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEEC---CeecCCCCHHH
Q 048556 258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID---GVNLKEFQLKW 334 (478)
Q Consensus 258 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~---g~~~~~~~~~~ 334 (478)
++.++.++++..|.. +..+++.++ ++.+||+++|+||||||||||+++|+++.+|+.|.|.+. |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~T--Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~ 213 (450)
T PRK06002 137 PPAMTRARVETGLRT--GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDT 213 (450)
T ss_pred CCCeEeecceEEcCC--CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHH
Confidence 356899999999963 457898886 999999999999999999999999999999999998885 56666554433
Q ss_pred ----hhcceEEEecCC
Q 048556 335 ----IRGKIGLVSQEP 346 (478)
Q Consensus 335 ----~r~~i~~v~Q~~ 346 (478)
+++.|++|+|..
T Consensus 214 l~~~r~rtI~vV~qsd 229 (450)
T PRK06002 214 LADNLKKAVAVVATSD 229 (450)
T ss_pred HHHhhCCeEEEEEcCC
Confidence 346799999965
No 463
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.72 E-value=4.6e-07 Score=102.72 Aligned_cols=54 Identities=28% Similarity=0.367 Sum_probs=47.3
Q ss_pred HHHHHcCCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh
Q 048556 410 IARAILKDPRILLLDEATSAL-DAESERVVQEALDKIM-INRTTVIVAHRLSTVRN 463 (478)
Q Consensus 410 lARall~~~~ililDEpts~L-D~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ 463 (478)
++|++..+|+++++|||+.+| |+..++.+.+.++..+ .+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 688999999999999999999 7889999999998775 47899999999987643
No 464
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.71 E-value=1.2e-08 Score=105.71 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=65.0
Q ss_pred CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc---EEEECCeecCCCCHHHh------hcceEEEecC
Q 048556 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG---EVLIDGVNLKEFQLKWI------RGKIGLVSQE 345 (478)
Q Consensus 275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G---~i~~~g~~~~~~~~~~~------r~~i~~v~Q~ 345 (478)
+..+++++ |++.+||+++|+|+||+|||||+++|+|+++|+.+ .|-.+|.++.++..+.+ |..++++||+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 34689999 99999999999999999999999999999998863 34445555555443333 4569999999
Q ss_pred CCCCcc-cHHHHHh
Q 048556 346 PVLFTS-SIKDNIN 358 (478)
Q Consensus 346 ~~lf~~-ti~eNl~ 358 (478)
...+.. ++.+|..
T Consensus 221 ~s~~~rl~a~e~a~ 234 (434)
T PRK07196 221 ESPLMRIKATELCH 234 (434)
T ss_pred CChhhhHHHHHHHH
Confidence 887754 7777764
No 465
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.69 E-value=7e-08 Score=98.39 Aligned_cols=123 Identities=22% Similarity=0.268 Sum_probs=79.2
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhccCCC-CccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCC
Q 048556 286 IPSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA 364 (478)
Q Consensus 286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~ 364 (478)
.+++..+.|.||+||||||+++.+.+.+++ .+|.|..-..++.-. .....+.+.|
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q-------------------- 174 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQ-------------------- 174 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEc--------------------
Confidence 467899999999999999999999997764 457765533332110 0000011111
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048556 365 SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDK 444 (478)
Q Consensus 365 ~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~ 444 (478)
..+|..... -.-++++||-.+|+++++||+. |+++....+++
T Consensus 175 --------------------------~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a--- 216 (343)
T TIGR01420 175 --------------------------REVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA--- 216 (343)
T ss_pred --------------------------cccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---
Confidence 011111111 1234677888999999999997 88877655554
Q ss_pred hcCCCeEEEEecCchhhhhcCEEEEE
Q 048556 445 IMINRTTVIVAHRLSTVRNADLIAVI 470 (478)
Q Consensus 445 ~~~~~t~i~itH~~~~~~~~d~i~vl 470 (478)
...+.+++.+.|..+.....+|+.-|
T Consensus 217 a~tGh~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 217 AETGHLVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred HHcCCcEEEEEcCCCHHHHHHHHHHh
Confidence 33577899999998887667776543
No 466
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.68 E-value=3.7e-05 Score=79.40 Aligned_cols=191 Identities=8% Similarity=-0.045 Sum_probs=129.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 41 IERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL-------------TLVMLSSIPAIVLTAGVMSTVITK 107 (478)
Q Consensus 41 ~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------------~li~l~~~~~~~~~~~~~~~~~~~ 107 (478)
=+|++.|+....+........++.+++.++..+.+++.+|..+ ..++++...+-.++..++++++-+
T Consensus 191 DQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~ 270 (409)
T PRK11098 191 AQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPG 270 (409)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 5799999999998888888999999999888887777777542 333344444444556677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 108 LASRGQTAYSIAAAVAEQTIGSIRTVASFTGEK-QAVAKYNESLTKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFG 186 (478)
Q Consensus 108 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 186 (478)
..-+.++..++....+.-.-++.+ +.|. ...+++.+..+++.+......... ... ..-..+..++-+.+.
T Consensus 271 Lnf~qqr~EAdFR~~LVrvrenaE-----~~E~~~L~~~F~~V~~N~~rl~~~~~~l~-~f~---~~y~~~~~i~P~iv~ 341 (409)
T PRK11098 271 LEFKNQRVEAAYRKELVYGEDDAD-----RATPPTVRELFSNVRKNYFRLYFHYMYFN-IAR---ILYLQVDNVFGLFLL 341 (409)
T ss_pred hHHHHHHHHHHHHHHHhHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHH
Confidence 888888777777665543333333 2222 233444554444444332222222 222 222222333333334
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 048556 187 GKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240 (478)
Q Consensus 187 ~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~ 240 (478)
+.....|+++.|.+......+.....+++.+.+.+..+.+-.+..+|+.++.+.
T Consensus 342 aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 342 FPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566779999999999998888999899999999999999999999999998764
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.65 E-value=2.9e-08 Score=92.34 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=58.4
Q ss_pred ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCC--CCc-ccHH
Q 048556 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV--LFT-SSIK 354 (478)
Q Consensus 278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~-~ti~ 354 (478)
..+=+.+.+++|+.++|+||+|||||||++.|+++++|+.|.|.+.+..-...+ .+..+.++.|... .+. -|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455677889999999999999999999999999999999999999775432222 2345666665543 233 3666
Q ss_pred HHHhc
Q 048556 355 DNINY 359 (478)
Q Consensus 355 eNl~~ 359 (478)
+++..
T Consensus 91 ~~l~~ 95 (186)
T cd01130 91 DLLRS 95 (186)
T ss_pred HHHHH
Confidence 66643
No 468
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.63 E-value=3.4e-07 Score=95.74 Aligned_cols=171 Identities=19% Similarity=0.268 Sum_probs=107.6
Q ss_pred CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC---HHH-----hhcceEEEecCC
Q 048556 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ---LKW-----IRGKIGLVSQEP 346 (478)
Q Consensus 275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~-----~r~~i~~v~Q~~ 346 (478)
+..+++++ +++.+||+++|+|+||+|||||++.|++..+|+.|.+...|..-.++. .+. +++.+.++.+..
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 35689999 999999999999999999999999999999999887777665433321 111 111222222211
Q ss_pred CCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcccccc-CCCCCCChHHHHHHHHHHHHcCCCCEEEEeC
Q 048556 347 VLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVG-EHGTQLSGGQKQRIAIARAILKDPRILLLDE 425 (478)
Q Consensus 347 ~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~-~~g~~LSgGq~Qrl~lARall~~~~ililDE 425 (478)
+...++...+.-...+.|++.. +|.|-.+= +.-.+ .|+|+= . ==+.+.|
T Consensus 229 ----------------~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr----------~A~A~R-E-isl~~ge 278 (440)
T TIGR01026 229 ----------------QSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTR----------FAMAQR-E-IGLAAGE 278 (440)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHH----------HHHHHH-H-HHHhcCC
Confidence 1122333333333444566654 26654332 22221 222220 0 0022455
Q ss_pred C--CCCCCHHHHHHHHHHHHHhcC-CC-------eEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 426 A--TSALDAESERVVQEALDKIMI-NR-------TTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 426 p--ts~LD~~~~~~i~~~l~~~~~-~~-------t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
| +.|.|+.....+.+.+.+... ++ ||++-+|+++ -.-+|++.-+.||+|+.
T Consensus 279 ~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivL 339 (440)
T TIGR01026 279 PPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVL 339 (440)
T ss_pred CCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEE
Confidence 4 568999999999999988753 46 7888899983 23479999999999874
No 469
>PRK12369 putative transporter; Reviewed
Probab=98.62 E-value=7.9e-05 Score=75.24 Aligned_cols=222 Identities=9% Similarity=-0.042 Sum_probs=139.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 048556 4 WIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWLL 83 (478)
Q Consensus 4 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 83 (478)
..+.+.+...-+.+++.++-+..+. ..|+ + | +|++.|++...+........++.+++.++..+.+++.++..+
T Consensus 87 ~~~l~i~WR~wLT~~~l~~wl~~~~-~iDN--P--D--QRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l 159 (326)
T PRK12369 87 ASHYAFRWREAMTFSYLKFWRNKRD-NIEG--S--S--QRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGV 159 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-CCCC--c--c--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3445556666666666666665331 1222 2 2 799999999999999999999999999888777777766333
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchH-HHHHHHHHHHH
Q 048556 84 ------------TLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGE-KQAVAKYNESL 150 (478)
Q Consensus 84 ------------~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e-~~~~~~~~~~~ 150 (478)
..++++...+-.++..++++++-+..-+.++..++....+...=++-+. + .| ....++|.+..
T Consensus 160 ~~~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~-~E~~~l~~~f~~v~ 235 (326)
T PRK12369 160 SLPFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y-AKPETLIELFTGLR 235 (326)
T ss_pred eeeecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h-hhHHHHHHHHHHHH
Confidence 2233444444455666778888777777777777765544332111111 1 12 22334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 151 TKAYKSGVHEGLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAA 230 (478)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a 230 (478)
+.+.+...+..+...... ....+..++-..+.+.....|+++.|.+......+.....++..+...+..+.+-.+.
T Consensus 236 ~n~~~~~~~~~~l~~~~~----~y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~ 311 (326)
T PRK12369 236 FNYFRLFLHYGYFNIWLI----SFSQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSI 311 (326)
T ss_pred HHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333222222222222 2222222332333456677999999999998888888888999999999999999999
Q ss_pred HHHHHHHHcc
Q 048556 231 AYKLFEAIER 240 (478)
Q Consensus 231 ~~ri~~~l~~ 240 (478)
.+|+.++.+.
T Consensus 312 ~~RL~~f~~~ 321 (326)
T PRK12369 312 YKRLKEFEKN 321 (326)
T ss_pred HHHHHHHHHH
Confidence 9999988653
No 470
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.61 E-value=9.6e-08 Score=92.41 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=36.5
Q ss_pred HHcCCCCEEEEeCCCCC------CCHHHHHHHHHHHHHhc--CCCeEEEEecCc
Q 048556 413 AILKDPRILLLDEATSA------LDAESERVVQEALDKIM--INRTTVIVAHRL 458 (478)
Q Consensus 413 all~~~~ililDEpts~------LD~~~~~~i~~~l~~~~--~~~t~i~itH~~ 458 (478)
+..++|+++|+| |+++ .|+.....+++.|.++. .++|+++++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 335799999999 7654 69988888999887765 378999999976
No 471
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.60 E-value=8e-09 Score=110.04 Aligned_cols=156 Identities=16% Similarity=0.175 Sum_probs=91.1
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHH--hccCCCCccEEEECCeecCCCCHHHhhcc---eEEEecCCCCCcccHHHHHhc
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLI--ERFYDPQAGEVLIDGVNLKEFQLKWIRGK---IGLVSQEPVLFTSSIKDNINY 359 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll--~g~~~~~~G~i~~~g~~~~~~~~~~~r~~---i~~v~Q~~~lf~~ti~eNl~~ 359 (478)
=+++|..+.|.||+|||||||..-. .|..++.+.-+++... -+.++++++ +++-.++.. -.+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~-----~~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLV-----DEGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHh-----hcCceEE
Confidence 4889999999999999999999876 3555444555666442 233444332 343333211 0011111
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH--HHHcCCCCEEEEeCCCCCCCHHHHHH
Q 048556 360 GKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA--RAILKDPRILLLDEATSALDAESERV 437 (478)
Q Consensus 360 ~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA--Rall~~~~ililDEpts~LD~~~~~~ 437 (478)
-... .........+..++.+++ ......+|+|++||+.|+ .++..+|+.. ...++.
T Consensus 88 ~~~~-~~~~~~~~~~~~~l~~~l-----------~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~ 145 (484)
T TIGR02655 88 LDAS-PDPEGQDVVGGFDLSALI-----------ERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRRE 145 (484)
T ss_pred EecC-chhccccccccCCHHHHH-----------HHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHH
Confidence 1100 000000111112222222 223467899999999999 6666655433 456677
Q ss_pred HHHHHHHhc-CCCeEEEEecCchh--------h-hh-cCEEEEEe
Q 048556 438 VQEALDKIM-INRTTVIVAHRLST--------V-RN-ADLIAVIH 471 (478)
Q Consensus 438 i~~~l~~~~-~~~t~i~itH~~~~--------~-~~-~d~i~vl~ 471 (478)
+.+.++.+. .++|+|+++|+++. + +. ||.|+.|+
T Consensus 146 l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 146 IFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 887777764 47999999998753 2 33 79999886
No 472
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.59 E-value=9.1e-07 Score=90.55 Aligned_cols=168 Identities=24% Similarity=0.349 Sum_probs=110.8
Q ss_pred EEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHh-ccCCC--CccEEEECCeecCCCCHHHhhcceEEE
Q 048556 266 IYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE-RFYDP--QAGEVLIDGVNLKEFQLKWIRGKIGLV 342 (478)
Q Consensus 266 v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~-g~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v 342 (478)
|++..|+. ..+.+ +-|++| ++.|+|..--|||||+++|. |.|+. .+|.=++ --.
T Consensus 227 ve~~LP~~---g~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipGDGRE~V-----------------VT~ 283 (448)
T PF09818_consen 227 VEIELPNG---GTVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPGDGREFV-----------------VTD 283 (448)
T ss_pred EEEECCCC---CEEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCCCCceEE-----------------EEC
Confidence 56666542 23444 579999 99999999999999999985 56653 4443221 100
Q ss_pred ecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 048556 343 SQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILL 422 (478)
Q Consensus 343 ~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ili 422 (478)
+.-..+- +.|- +....+.+..||..||.|.||. .-.-.+=||-.-|=-.|..|+=..+++|+
T Consensus 284 ~~avkir--------------AEDG---R~V~~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~LL 345 (448)
T PF09818_consen 284 PDAVKIR--------------AEDG---RSVEGVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLLL 345 (448)
T ss_pred CCceEEE--------------ecCC---ceEeCccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEEE
Confidence 0000000 0000 1123344567999999999988 33456789999999999999999999999
Q ss_pred EeCCCCCCCHHH-----HHHH----------HHHHHHhc--CC-CeEEEEecCchhhhhcCEEEEEeCCE
Q 048556 423 LDEATSALDAES-----ERVV----------QEALDKIM--IN-RTTVIVAHRLSTVRNADLIAVIHQGK 474 (478)
Q Consensus 423 lDEpts~LD~~~-----~~~i----------~~~l~~~~--~~-~t~i~itH~~~~~~~~d~i~vl~~G~ 474 (478)
+||=|||-.-.- ++-+ .+.++.+. .+ .|++++.--=..+..||+|+.|++=+
T Consensus 346 iDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~ 415 (448)
T PF09818_consen 346 IDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYR 415 (448)
T ss_pred EcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCcc
Confidence 999999974433 3333 33333442 23 45555555555678899999998744
No 473
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.57 E-value=1e-07 Score=100.17 Aligned_cols=61 Identities=18% Similarity=0.320 Sum_probs=49.0
Q ss_pred ccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhc
Q 048556 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINY 359 (478)
Q Consensus 280 ~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~ 359 (478)
++.++.+++|++++++||||+||||++..|++.+.+..|. +.|+++++|+ |.-+..|++.+
T Consensus 247 ~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQLr~ 307 (484)
T PRK06995 247 DSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQLRI 307 (484)
T ss_pred cCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHHHH
Confidence 3445556789999999999999999999999988776664 2578899887 55677888875
No 474
>PRK01889 GTPase RsgA; Reviewed
Probab=98.56 E-value=7.3e-08 Score=98.61 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=68.6
Q ss_pred ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHH
Q 048556 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNI 357 (478)
Q Consensus 278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl 357 (478)
-++.+.-.+++|++++++|+||+|||||++.|+|...+..|+|.+++..... ...++++.+++|+..+|+.+...|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 4666777789999999999999999999999999999999999998754322 2235689999999999988888888
Q ss_pred hcCCC
Q 048556 358 NYGKD 362 (478)
Q Consensus 358 ~~~~~ 362 (478)
.+..+
T Consensus 261 ~l~~~ 265 (356)
T PRK01889 261 QLWDA 265 (356)
T ss_pred cccCc
Confidence 87653
No 475
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.55 E-value=1.3e-07 Score=96.65 Aligned_cols=72 Identities=24% Similarity=0.332 Sum_probs=55.3
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCC--Ccc-EEEECCeecCCCCHHHhhcceEEEecCC-----CCCcccHHHHHh
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDP--QAG-EVLIDGVNLKEFQLKWIRGKIGLVSQEP-----VLFTSSIKDNIN 358 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-----~lf~~ti~eNl~ 358 (478)
++|..++|+||+||||||+++.|++.+.+ .++ .|.....++ ++..+.+++..++++|.. .-|..+++++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 58999999999999999999999999853 334 565544444 576666666678888864 257789999888
Q ss_pred c
Q 048556 359 Y 359 (478)
Q Consensus 359 ~ 359 (478)
.
T Consensus 211 ~ 211 (358)
T TIGR02524 211 R 211 (358)
T ss_pred c
Confidence 6
No 476
>PRK08149 ATP synthase SpaL; Validated
Probab=98.54 E-value=2.3e-07 Score=96.19 Aligned_cols=70 Identities=19% Similarity=0.318 Sum_probs=60.1
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCc---cEEEECCeecCCCCHHHhh----cceEEEecCC
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGVNLKEFQLKWIR----GKIGLVSQEP 346 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~ 346 (478)
..+++++ +++.+||+++|+|+||+|||||+++|++..+++. |.|-.+|.++.++..+.++ +++++|....
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 4689999 9999999999999999999999999999999987 9999999999887655544 5667776543
No 477
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.48 E-value=1.5e-07 Score=88.30 Aligned_cols=108 Identities=20% Similarity=0.262 Sum_probs=61.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH-----HHhcCCCCC-
Q 048556 291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD-----NINYGKDGA- 364 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e-----Nl~~~~~~~- 364 (478)
+++|+||||||||||.+.|.+++ ..|.+.+-+.| .+...-+.++ +..+..|..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQD-------------------SYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEec-------------------ccccccccccHHHhccCCCCCCCcc
Confidence 48999999999999999999998 33444433332 2221111111 111222222
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556 365 SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433 (478)
Q Consensus 365 ~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~ 433 (478)
+.+.+. +.+..+-.| ..+.....++|.|++++-.+ .+.+|+++|+|+|+...++.
T Consensus 60 ~~~~~~---------~~l~~l~~~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 60 DFDLLI---------SHLQDLKNG--KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred cHHHHH---------HHHHHHHCC--CCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 122221 122222112 22333345777887776554 56889999999999998753
No 478
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.47 E-value=1.7e-07 Score=87.05 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=46.2
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCC
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEP 346 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 346 (478)
|+.++|+||||||||||+++|++...| .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999999876 5888888877665555667788888874
No 479
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.43 E-value=6e-07 Score=102.88 Aligned_cols=77 Identities=23% Similarity=0.357 Sum_probs=66.4
Q ss_pred CCCCCChHHHHHHHH------HHHHcCC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhhcCE
Q 048556 396 HGTQLSGGQKQRIAI------ARAILKD--PRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRNADL 466 (478)
Q Consensus 396 ~g~~LSgGq~Qrl~l------ARall~~--~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~ 466 (478)
...+|||||+=.++| |..+..+ -+.++|||||.+||+++...+.+.|..+.. +++|++|||+.++...+|.
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~ 891 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADV 891 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCe
Confidence 457999999986555 4555667 699999999999999999999999998865 5999999999999999999
Q ss_pred EEEEeC
Q 048556 467 IAVIHQ 472 (478)
Q Consensus 467 i~vl~~ 472 (478)
++.++.
T Consensus 892 ~i~V~k 897 (908)
T COG0419 892 RIRVKK 897 (908)
T ss_pred EEEEEe
Confidence 988854
No 480
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.42 E-value=2.8e-07 Score=88.42 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=30.8
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHh-ccCCCCccEEEECC
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIE-RFYDPQAGEVLIDG 324 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~-g~~~~~~G~i~~~g 324 (478)
-+++|+.+.|.||+|||||||+..++ ....+.++.+++..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 58999999999999999999988654 23345555666654
No 481
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.37 E-value=6.8e-07 Score=82.32 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=47.5
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE-----------CCeecCCCCHHHhh-----cceEEEecCCCCCcc
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-----------DGVNLKEFQLKWIR-----GKIGLVSQEPVLFTS 351 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~-----------~g~~~~~~~~~~~r-----~~i~~v~Q~~~lf~~ 351 (478)
|+.++|+||||||||||++.|++.+.+. |.+.+ +|.+....+.+++. +.++.+.|...++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 65544 66666666665553 348888998766655
No 482
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.37 E-value=2e-06 Score=97.39 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=41.5
Q ss_pred HHcCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhc-CCCeEEEEecCchhh
Q 048556 413 AILKDPRILLLDEATSALD-AESERVVQEALDKIM-INRTTVIVAHRLSTV 461 (478)
Q Consensus 413 all~~~~ililDEpts~LD-~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~ 461 (478)
.+-.+|.++++|||...|| +...+.+.+.++..+ .+..++++||.++.+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4567899999999999999 778888888888775 467899999998764
No 483
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.36 E-value=4.2e-07 Score=83.75 Aligned_cols=65 Identities=28% Similarity=0.334 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhc-ceEEEecCCCCC-cccHHHHHh
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRG-KIGLVSQEPVLF-TSSIKDNIN 358 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~-~i~~v~Q~~~lf-~~ti~eNl~ 358 (478)
+||.++++|+||||||||++.|++++.+ +.++|.++... ...|+ ..++.+|+...+ .-+..+|..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999999887 58899887432 22222 245555554322 234444444
No 484
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.36 E-value=6.7e-07 Score=105.83 Aligned_cols=61 Identities=26% Similarity=0.347 Sum_probs=54.4
Q ss_pred CCCCCChHHHHHHH----HHHH--------HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCc
Q 048556 396 HGTQLSGGQKQRIA----IARA--------ILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRL 458 (478)
Q Consensus 396 ~g~~LSgGq~Qrl~----lARa--------ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~ 458 (478)
....||||||||++ +|++ +..+|++++|||||+++|+.+...+++.+.++ +.++|++||++
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 45789999999996 5755 55799999999999999999999999999887 67899999987
No 485
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.36 E-value=1.5e-06 Score=102.07 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=36.7
Q ss_pred ceeeecCCCEEEEEcCCCCChHHHHHHHhccC-CCCccEEEECCe
Q 048556 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFY-DPQAGEVLIDGV 325 (478)
Q Consensus 282 is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~ 325 (478)
+++..+++++++|+|++|+|||||++.+.+.. ...+|.+++++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 56778889999999999999999999995544 456899988753
No 486
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.35 E-value=9.8e-07 Score=82.97 Aligned_cols=104 Identities=16% Similarity=0.153 Sum_probs=64.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCC--CHHH
Q 048556 291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA--SIAE 368 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~--~~~~ 368 (478)
+++|+||+|||||||++.+.+.+.+..| +.+...+.......++.+..++++|++.+. +..| +.+.. .++-
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~---g~~~~~~~~~~ 75 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILG---VETG---GCPHTAIREDA 75 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceeh---hhcC---CCccceeccCH
Confidence 6899999999999999999999887655 555555655555566666778889887542 1111 12211 1111
Q ss_pred HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556 369 IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ 404 (478)
Q Consensus 369 ~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 404 (478)
. .....+.+++..+|++-...++..|..+|.-.
T Consensus 76 ~---~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 76 S---MNLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred H---HHHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 1 12333455556666555566777776665544
No 487
>PRK09183 transposase/IS protein; Provisional
Probab=98.34 E-value=1.8e-06 Score=84.50 Aligned_cols=52 Identities=19% Similarity=0.320 Sum_probs=38.3
Q ss_pred EEeEEEECCCCCCC---cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556 263 LKDIYFSYPSRPGE---QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 263 ~~~v~~~y~~~~~~---~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
+++..|++....++ ..|.+++| +++|+.+.|+||+|+|||+|+..|+.....
T Consensus 74 l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 74 FEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred HhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 44555555422112 24777888 999999999999999999999999765443
No 488
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.33 E-value=3.5e-06 Score=73.31 Aligned_cols=54 Identities=19% Similarity=0.226 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc------CCCeEEEEecCch
Q 048556 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM------INRTTVIVAHRLS 459 (478)
Q Consensus 405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~------~~~t~i~itH~~~ 459 (478)
.+.....++...++.++++||.-.. +......+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5556667777889999999998765 5566677777777653 4568888888654
No 489
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.33 E-value=2.2e-06 Score=86.25 Aligned_cols=72 Identities=22% Similarity=0.221 Sum_probs=54.5
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC------CCHHHhhcceEEEecCCCCCcc-cHHHHHh
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE------FQLKWIRGKIGLVSQEPVLFTS-SIKDNIN 358 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~------~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~ 358 (478)
++|++++++|||||||||++..|++.+.+..|+|.+.+.|... +.....+..+.+++|.....+. ++++++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999999999999999988899998887643 2223345668899886544332 4455543
No 490
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.33 E-value=3.2e-07 Score=86.81 Aligned_cols=29 Identities=38% Similarity=0.479 Sum_probs=27.2
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
++|++++|+||||||||||++.|.+++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999999999864
No 491
>PLN02796 D-glycerate 3-kinase
Probab=98.28 E-value=3.6e-07 Score=91.83 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=51.5
Q ss_pred cccccceeee---cCCCE-----EEEEcCCCCChHHHHHHHhccCCCC---ccEEEECCeecCCCCHHHhhc
Q 048556 277 QIFNGFSLSI---PSGTT-----AALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVNLKEFQLKWIRG 337 (478)
Q Consensus 277 ~~l~~is~~i---~~G~~-----~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~r~ 337 (478)
.+++++++.+ ++|+. +||+|++|||||||++.|.+++++. .|.|.+||..+...+...+++
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 5788898887 67887 9999999999999999999999875 588999999887666566554
No 492
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.27 E-value=0.00036 Score=69.20 Aligned_cols=168 Identities=11% Similarity=-0.046 Sum_probs=128.1
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChh---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSG---EIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSK 79 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG---~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (478)
+...++.+....+...+.++.++-. .||.-....+ .-=+|+++|++.+.+........++..++.++.....++..
T Consensus 89 l~~~L~l~wR~~Lt~~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~ 167 (281)
T PF06472_consen 89 LRQRLALRWREWLTRHLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSI 167 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445666666677777777776666 5555221222 45679999999999999999999999998888877777766
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 048556 80 GWLLTL-VMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGV 158 (478)
Q Consensus 80 ~~~l~l-i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 158 (478)
+..+.. ++++..++..++..++++++.+...+.++..++.........++.+.|-.++-|+.+.++.++..++..+...
T Consensus 168 ~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~ 247 (281)
T PF06472_consen 168 SGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWR 247 (281)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 666666 5666666777788899999999999999999999999999999999999999999999998888877666554
Q ss_pred HHHHHHHHHHHHH
Q 048556 159 HEGLAAGLGFGAF 171 (478)
Q Consensus 159 ~~~~~~~~~~~~~ 171 (478)
+..+.......+.
T Consensus 248 ~~~~~~~~~~~~~ 260 (281)
T PF06472_consen 248 RLIRRRLRLGFFT 260 (281)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
No 493
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.25 E-value=4.6e-06 Score=94.48 Aligned_cols=66 Identities=24% Similarity=0.198 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHcC--CCCEEEEeCC---CCCCCHHH-HHHHHHHHHHhcCCCeEEEEecCchhhhhcCE
Q 048556 400 LSGGQKQRIAIARAILK--DPRILLLDEA---TSALDAES-ERVVQEALDKIMINRTTVIVAHRLSTVRNADL 466 (478)
Q Consensus 400 LSgGq~Qrl~lARall~--~~~ililDEp---ts~LD~~~-~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ 466 (478)
+|--+.....+++++-+ ++.++|+||| |+.+|... ...+.+.+.+. .+++++++||..+....+++
T Consensus 667 ~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~-~~~~~l~aTH~~el~~l~~~ 738 (854)
T PRK05399 667 RSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDK-IGAKTLFATHYHELTELEEK 738 (854)
T ss_pred cccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhc-CCceEEEEechHHHHHHhhh
Confidence 45555666667766655 7899999999 88888554 22344444331 24799999999666554543
No 494
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=98.24 E-value=1.6e-05 Score=80.12 Aligned_cols=155 Identities=26% Similarity=0.347 Sum_probs=101.5
Q ss_pred eeecCCCEEEEEcCCCCChHHHHHHHhccC-C--CCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcC
Q 048556 284 LSIPSGTTAALVGQSGSGKSTVISLIERFY-D--PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360 (478)
Q Consensus 284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~--~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~ 360 (478)
+-|++| +..|+|++--|||||+++|..-. + |-+|.=++ +++.. .+++.- +|...
T Consensus 238 mgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipGDGRE~v----VTd~~-------lakaea----------e~gr~- 294 (554)
T COG3044 238 MGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPGDGRERV----VTDVK-------LAKAEA----------EEGRC- 294 (554)
T ss_pred cCCCcc-eEEEecCCccchhHHHHHHHhcccccCCCCCceEE----Eehhh-------hhhhhc----------cccee-
Confidence 568999 99999999999999999996533 2 33443221 01100 000000 11110
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH------
Q 048556 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES------ 434 (478)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~------ 434 (478)
..-..+.-|+++||.|=+|.-.-.| .=||-..|=-.|=||+=..++.+++||=+|+....-
T Consensus 295 ------------vsg~D~SlFi~~LPggkdTp~fvtg-dASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlak 361 (554)
T COG3044 295 ------------VSGLDLSLFINHLPGGKDTPDFVTG-DASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAK 361 (554)
T ss_pred ------------eeccchHHHHHhCCCCCCCcccccC-CCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHH
Confidence 0112234699999977788876555 479999999999999999999999999999974321
Q ss_pred ----HH---HHHHHHHHhcCC-CeEEEEecCchh-hhhcCEEEEEeCCE
Q 048556 435 ----ER---VVQEALDKIMIN-RTTVIVAHRLST-VRNADLIAVIHQGK 474 (478)
Q Consensus 435 ----~~---~i~~~l~~~~~~-~t~i~itH~~~~-~~~~d~i~vl~~G~ 474 (478)
++ .+.+-+.+...+ -++|+||--+.. ...+||++||+|=+
T Consensus 362 e~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhr 410 (554)
T COG3044 362 ESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHR 410 (554)
T ss_pred HhcCcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccC
Confidence 12 233333333333 677777777664 56699999998744
No 495
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.23 E-value=3e-06 Score=81.51 Aligned_cols=72 Identities=22% Similarity=0.296 Sum_probs=45.9
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhcc-CCC------CccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHH
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERF-YDP------QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNI 357 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~~------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl 357 (478)
=+++|+++.|+||+|||||||+..++.. ..| ..+.+++++.+ ..+.+.+.+.. |.......++.+|+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i 88 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNI 88 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCE
Confidence 3889999999999999999999988743 333 36778887765 23333333221 11111233566777
Q ss_pred hcCCC
Q 048556 358 NYGKD 362 (478)
Q Consensus 358 ~~~~~ 362 (478)
.+..+
T Consensus 89 ~~~~~ 93 (235)
T cd01123 89 YVARA 93 (235)
T ss_pred EEEec
Confidence 66554
No 496
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.22 E-value=1.3e-06 Score=90.90 Aligned_cols=83 Identities=18% Similarity=0.346 Sum_probs=61.6
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-CccEEEE---CCeecCCCCHHHhh---cceEEE-----e
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLI---DGVNLKEFQLKWIR---GKIGLV-----S 343 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~---~g~~~~~~~~~~~r---~~i~~v-----~ 343 (478)
..+++++ |++.+||+++|+|+||||||||++.|+|..++ +.|.|.+ .|.++.++..+.++ .+.+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 3578887 99999999999999999999999999999854 4466766 45677666555554 235555 8
Q ss_pred cCCC------CCcccHHHHHhc
Q 048556 344 QEPV------LFTSSIKDNINY 359 (478)
Q Consensus 344 Q~~~------lf~~ti~eNl~~ 359 (478)
|+|. ....++.|.+..
T Consensus 231 q~p~~rlnp~~va~~IAE~~r~ 252 (442)
T PRK06315 231 QSSQLRLNAAYVGTAIAEYFRD 252 (442)
T ss_pred CCHHHHhhHHHHHHHHHHHHHH
Confidence 8763 222378888864
No 497
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.22 E-value=6.3e-06 Score=90.23 Aligned_cols=110 Identities=22% Similarity=0.231 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCCCCcc--------EEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhc
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYDPQAG--------EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINY 359 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G--------~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~ 359 (478)
..+.++|+||+|+|||||++++.++..+..| -+.+||.++. ++...+ .|-.+
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-~d~~~i-------------------~~~ll 233 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-WDPREV-------------------TNPLL 233 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-CCHHHH-------------------hHHhc
Confidence 3467999999999999999999998865443 4777776552 222221 11122
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHH
Q 048556 360 GKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 439 (478)
Q Consensus 360 ~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~ 439 (478)
+.. .+.....+ .+.+... |+..........+||| +|+||| +..||+.....+.
T Consensus 234 g~~--~~~~~~~a------~~~l~~~--gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll 286 (615)
T TIGR02903 234 GSV--HDPIYQGA------RRDLAET--GVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLL 286 (615)
T ss_pred CCc--cHHHHHHH------HHHHHHc--CCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHH
Confidence 221 11000011 1111111 3322223334567777 999999 7999999999999
Q ss_pred HHHHH
Q 048556 440 EALDK 444 (478)
Q Consensus 440 ~~l~~ 444 (478)
+.+++
T Consensus 287 ~~Le~ 291 (615)
T TIGR02903 287 KVLED 291 (615)
T ss_pred HHHhh
Confidence 98865
No 498
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.20 E-value=7.6e-07 Score=82.87 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchh--h-hhcCEEEEEeCC
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLST--V-RNADLIAVIHQG 473 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~--~-~~~d~i~vl~~G 473 (478)
|+-+|..||.++..+|+.+..+| +-+||...+.+.+.+.+... +.++++.+|.+.. + ..||.+++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 77899999999999999988777 78999999999999987653 3699999999854 3 459999999876
No 499
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.18 E-value=2.3e-05 Score=88.92 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=46.9
Q ss_pred HHcCCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhc-CCCeEEEEecCchhh----------hhcCEEEEEeCC
Q 048556 413 AILKDPRILLLDEATSALD-AESERVVQEALDKIM-INRTTVIVAHRLSTV----------RNADLIAVIHQG 473 (478)
Q Consensus 413 all~~~~ililDEpts~LD-~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~----------~~~d~i~vl~~G 473 (478)
.+-.+|+++++|||+..|| +...+.+.+.++..+ .+.+++++||+++.+ ++|+..+.|.+.
T Consensus 631 ~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~ 703 (811)
T PRK13873 631 RFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNE 703 (811)
T ss_pred HhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCc
Confidence 3445899999999999999 667888888887764 468999999998754 345655555553
No 500
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.15 E-value=6.4e-07 Score=79.09 Aligned_cols=66 Identities=30% Similarity=0.476 Sum_probs=47.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCC-------------CccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHH
Q 048556 291 TAALVGQSGSGKSTVISLIERFYDP-------------QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNI 357 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~~-------------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl 357 (478)
.++|+||||||||||++.|++.+++ ..|+ .+|++..-++.+++.+ .+.++.++..++...|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~---~~~~~~f~e~~~~~~~- 74 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFER---LIENGEFLEWAEFHGN- 74 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHH---HHHcCCeEEEEEEcCE-
Confidence 3789999999999999999999754 3344 4677666667666665 3456666666677777
Q ss_pred hcCCC
Q 048556 358 NYGKD 362 (478)
Q Consensus 358 ~~~~~ 362 (478)
.+|.+
T Consensus 75 ~yg~~ 79 (137)
T cd00071 75 YYGTS 79 (137)
T ss_pred EecCc
Confidence 35543
Done!