Query 048556
Match_columns 478
No_of_seqs 208 out of 2559
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 18:29:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 2E-92 6.7E-97 824.3 60.7 476 2-478 158-633 (1321)
2 3qf4_A ABC transporter, ATP-bi 100.0 1E-87 3.5E-92 728.2 61.4 472 3-477 86-557 (587)
3 4a82_A Cystic fibrosis transme 100.0 1E-87 3.5E-92 727.6 55.9 472 3-477 84-555 (578)
4 4f4c_A Multidrug resistance pr 100.0 6.6E-89 2.3E-93 794.6 43.4 475 3-478 817-1296(1321)
5 3b5x_A Lipid A export ATP-bind 100.0 9.3E-86 3.2E-90 713.1 63.9 470 3-477 88-558 (582)
6 2yl4_A ATP-binding cassette SU 100.0 1E-85 3.5E-90 714.4 64.3 473 3-477 85-561 (595)
7 3qf4_B Uncharacterized ABC tra 100.0 4E-87 1.4E-91 725.4 52.3 471 3-478 100-570 (598)
8 3b60_A Lipid A export ATP-bind 100.0 1.2E-85 4E-90 712.3 61.1 470 3-477 88-558 (582)
9 3g5u_A MCG1178, multidrug resi 100.0 6.7E-85 2.3E-89 759.2 49.5 475 2-477 130-604 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 6.9E-79 2.4E-83 708.7 47.7 474 3-477 772-1249(1284)
11 3nh6_A ATP-binding cassette SU 100.0 2.6E-65 8.8E-70 508.4 24.7 255 220-477 14-268 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1.4E-56 4.8E-61 434.1 28.3 218 259-477 6-223 (247)
13 2ghi_A Transport protein; mult 100.0 2.7E-55 9.2E-60 428.2 27.3 218 259-477 16-233 (260)
14 2ixe_A Antigen peptide transpo 100.0 4.3E-55 1.5E-59 429.1 27.7 219 259-477 15-236 (271)
15 1mv5_A LMRA, multidrug resista 100.0 3.8E-56 1.3E-60 430.3 18.3 215 261-477 2-217 (243)
16 3gd7_A Fusion complex of cysti 100.0 4.4E-53 1.5E-57 433.1 24.2 217 258-477 17-233 (390)
17 2pze_A Cystic fibrosis transme 100.0 1.2E-51 4E-56 395.3 24.2 203 260-477 6-209 (229)
18 3tif_A Uncharacterized ABC tra 100.0 3.4E-52 1.2E-56 400.5 20.1 210 261-477 2-225 (235)
19 2cbz_A Multidrug resistance-as 100.0 1.8E-51 6.1E-56 395.9 22.7 202 261-477 4-208 (237)
20 1ji0_A ABC transporter; ATP bi 100.0 8.9E-51 3E-55 391.9 24.4 209 260-477 6-219 (240)
21 3tui_C Methionine import ATP-b 100.0 9.8E-51 3.4E-55 410.6 23.7 212 260-478 24-245 (366)
22 3gfo_A Cobalt import ATP-bindi 100.0 6.1E-51 2.1E-55 399.8 21.4 209 260-477 7-224 (275)
23 2pcj_A ABC transporter, lipopr 100.0 2.9E-50 9.8E-55 384.4 21.2 207 261-477 5-219 (224)
24 1g6h_A High-affinity branched- 100.0 1.3E-49 4.5E-54 387.5 24.1 208 260-477 7-233 (257)
25 2olj_A Amino acid ABC transpor 100.0 2E-49 7E-54 386.7 24.7 208 260-477 24-239 (263)
26 4g1u_C Hemin import ATP-bindin 100.0 1E-49 3.5E-54 389.8 22.5 208 260-477 11-228 (266)
27 1vpl_A ABC transporter, ATP-bi 100.0 3.2E-49 1.1E-53 384.1 22.8 208 259-477 14-226 (256)
28 3fvq_A Fe(3+) IONS import ATP- 100.0 3.4E-49 1.2E-53 399.1 23.5 208 260-477 4-219 (359)
29 1b0u_A Histidine permease; ABC 100.0 7E-49 2.4E-53 383.3 23.4 208 260-477 6-233 (262)
30 3rlf_A Maltose/maltodextrin im 100.0 3.9E-49 1.3E-53 401.3 21.1 206 260-477 3-214 (381)
31 2yz2_A Putative ABC transporte 100.0 1.3E-48 4.3E-53 382.4 22.9 203 261-477 3-218 (266)
32 2ihy_A ABC transporter, ATP-bi 100.0 5.9E-49 2E-53 386.8 20.7 207 260-477 21-243 (279)
33 2bbs_A Cystic fibrosis transme 100.0 1.2E-48 4.1E-53 386.4 21.7 199 259-477 39-238 (290)
34 2yyz_A Sugar ABC transporter, 100.0 3.6E-48 1.2E-52 392.6 24.0 205 261-477 4-214 (359)
35 2onk_A Molybdate/tungstate ABC 100.0 2.6E-48 8.9E-53 374.3 21.8 202 261-477 2-207 (240)
36 2qi9_C Vitamin B12 import ATP- 100.0 6.6E-48 2.2E-52 373.3 23.0 198 261-477 5-213 (249)
37 1z47_A CYSA, putative ABC-tran 100.0 3.7E-48 1.3E-52 391.7 21.8 208 259-477 13-226 (355)
38 2d2e_A SUFC protein; ABC-ATPas 100.0 8.2E-49 2.8E-53 380.4 16.1 207 261-477 4-224 (250)
39 1v43_A Sugar-binding transport 100.0 7.9E-48 2.7E-52 391.9 23.8 206 260-477 11-222 (372)
40 2it1_A 362AA long hypothetical 100.0 3.8E-48 1.3E-52 392.9 21.3 205 261-477 4-214 (362)
41 1oxx_K GLCV, glucose, ABC tran 100.0 4.6E-48 1.6E-52 391.9 20.0 207 261-477 4-221 (353)
42 3d31_A Sulfate/molybdate ABC t 100.0 9E-48 3.1E-52 388.5 21.8 200 261-477 2-208 (348)
43 1g29_1 MALK, maltose transport 100.0 1.1E-47 3.8E-52 391.4 21.4 205 261-477 4-220 (372)
44 2zu0_C Probable ATP-dependent 100.0 5.2E-47 1.8E-51 371.1 24.5 208 260-477 20-245 (267)
45 2pjz_A Hypothetical protein ST 100.0 3.3E-47 1.1E-51 371.1 19.9 198 261-477 2-206 (263)
46 1sgw_A Putative ABC transporte 100.0 1.7E-47 5.8E-52 362.1 15.5 194 260-475 10-210 (214)
47 2nq2_C Hypothetical ABC transp 100.0 1.1E-46 3.6E-51 365.9 20.4 193 261-477 5-208 (253)
48 3ozx_A RNAse L inhibitor; ATP 100.0 3.2E-37 1.1E-41 328.8 17.9 188 259-473 268-462 (538)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 3.3E-37 1.1E-41 329.3 15.2 190 260-476 287-483 (538)
50 3bk7_A ABC transporter ATP-bin 100.0 6.5E-37 2.2E-41 330.6 17.0 188 260-475 357-552 (607)
51 2iw3_A Elongation factor 3A; a 100.0 2.8E-37 9.6E-42 344.7 12.9 202 260-477 671-978 (986)
52 3bk7_A ABC transporter ATP-bin 100.0 9E-37 3.1E-41 329.5 15.4 193 264-473 95-304 (607)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 1.1E-36 3.7E-41 325.4 13.8 196 261-473 21-234 (538)
54 2v9p_A Replication protein E1; 100.0 3.4E-40 1.2E-44 326.9 -14.9 220 191-477 36-257 (305)
55 3ux8_A Excinuclease ABC, A sub 100.0 1.5E-35 5.2E-40 325.3 13.8 193 276-477 31-289 (670)
56 2iw3_A Elongation factor 3A; a 100.0 5.4E-34 1.8E-38 318.3 25.2 188 259-476 434-624 (986)
57 3j16_B RLI1P; ribosome recycli 100.0 9.8E-35 3.4E-39 313.1 17.9 188 264-477 350-550 (608)
58 3j16_B RLI1P; ribosome recycli 100.0 4.3E-34 1.5E-38 308.1 16.3 195 265-474 82-298 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 1.2E-34 4.2E-39 309.0 11.2 191 265-473 4-213 (538)
60 3ux8_A Excinuclease ABC, A sub 100.0 3.9E-34 1.3E-38 314.1 12.7 190 276-477 335-631 (670)
61 4aby_A DNA repair protein RECN 100.0 1.6E-32 5.6E-37 284.5 16.3 199 277-476 49-378 (415)
62 3pih_A Uvrabc system protein A 100.0 8.9E-32 3.1E-36 300.1 17.5 190 277-477 598-893 (916)
63 2vf7_A UVRA2, excinuclease ABC 100.0 1.7E-31 5.9E-36 295.5 14.5 203 259-477 501-818 (842)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.1E-34 3.9E-39 303.5 -13.5 181 261-476 119-329 (460)
65 2r6f_A Excinuclease ABC subuni 100.0 1.1E-30 3.6E-35 289.7 16.3 199 260-477 629-933 (972)
66 2ygr_A Uvrabc system protein A 100.0 4.6E-30 1.6E-34 285.6 17.0 199 260-477 647-951 (993)
67 1e69_A Chromosome segregation 100.0 1E-29 3.4E-34 255.3 16.7 194 281-475 17-301 (322)
68 3b85_A Phosphate starvation-in 100.0 6.6E-31 2.2E-35 247.4 -4.6 158 276-474 13-171 (208)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.4E-27 8.1E-32 241.9 14.3 83 395-477 275-364 (365)
70 4gp7_A Metallophosphoesterase; 99.9 1.7E-27 5.7E-32 217.3 5.4 149 281-467 1-168 (171)
71 1ye8_A Protein THEP1, hypothet 99.9 1.1E-27 3.6E-32 220.2 2.7 140 291-466 2-152 (178)
72 1z6g_A Guanylate kinase; struc 99.9 1.3E-29 4.5E-34 240.4 -12.0 151 277-450 11-178 (218)
73 2pt7_A CAG-ALFA; ATPase, prote 99.9 4.7E-28 1.6E-32 243.6 -2.5 140 263-474 151-291 (330)
74 1tq4_A IIGP1, interferon-induc 99.9 1.2E-27 4.2E-32 246.3 -6.4 167 276-467 36-247 (413)
75 2dpy_A FLII, flagellum-specifi 99.9 2.4E-26 8.2E-31 239.2 -1.7 186 259-477 130-335 (438)
76 3b9q_A Chloroplast SRP recepto 99.9 8.1E-26 2.8E-30 224.4 -2.1 176 279-476 90-285 (302)
77 3aez_A Pantothenate kinase; tr 99.9 1.8E-26 6.2E-31 230.1 -9.9 167 258-461 41-231 (312)
78 3sop_A Neuronal-specific septi 99.9 2.2E-25 7.6E-30 218.0 -3.2 146 291-461 4-153 (270)
79 1znw_A Guanylate kinase, GMP k 99.9 1.5E-25 5.3E-30 210.4 -6.5 169 276-472 9-203 (207)
80 2og2_A Putative signal recogni 99.9 1.1E-24 3.7E-29 220.6 -1.1 175 280-476 148-342 (359)
81 2o5v_A DNA replication and rep 99.9 4.7E-22 1.6E-26 201.5 14.1 74 399-477 265-347 (359)
82 4ad8_A DNA repair protein RECN 99.9 9.5E-22 3.2E-26 209.5 12.7 77 397-473 394-473 (517)
83 2obl_A ESCN; ATPase, hydrolase 99.9 5.4E-23 1.9E-27 207.8 2.7 186 260-477 45-246 (347)
84 2f1r_A Molybdopterin-guanine d 99.9 1.6E-24 5.6E-29 197.4 -8.4 134 290-444 3-158 (171)
85 2eyu_A Twitching motility prot 99.8 1.6E-22 5.4E-27 196.8 3.6 131 277-471 15-146 (261)
86 2i3b_A HCR-ntpase, human cance 99.8 6.7E-24 2.3E-28 196.6 -6.0 157 289-477 1-167 (189)
87 1cr0_A DNA primase/helicase; R 99.8 1.2E-21 4.1E-26 193.7 9.4 181 277-475 23-237 (296)
88 3qkt_A DNA double-strand break 99.8 1.1E-20 3.8E-25 190.7 16.1 79 396-474 245-332 (339)
89 1tf7_A KAIC; homohexamer, hexa 99.8 3.4E-23 1.2E-27 221.0 -4.2 167 275-472 24-209 (525)
90 2o8b_B DNA mismatch repair pro 99.8 4.8E-21 1.6E-25 217.1 11.5 165 259-476 749-930 (1022)
91 2ewv_A Twitching motility prot 99.8 1.3E-23 4.5E-28 214.5 -11.3 175 277-460 126-353 (372)
92 1tf7_A KAIC; homohexamer, hexa 99.8 1.6E-20 5.3E-25 200.4 11.5 153 283-474 275-444 (525)
93 1w1w_A Structural maintenance 99.8 1.9E-19 6.5E-24 187.4 15.4 73 399-471 333-410 (430)
94 1lvg_A Guanylate kinase, GMP k 99.8 9E-24 3.1E-28 197.2 -17.0 158 287-472 2-173 (198)
95 2jeo_A Uridine-cytidine kinase 99.8 1.7E-21 5.8E-26 187.6 -1.7 152 275-459 11-166 (245)
96 3pih_A Uvrabc system protein A 99.8 2.8E-20 9.6E-25 207.7 7.0 156 306-477 385-551 (916)
97 2gza_A Type IV secretion syste 99.8 1.1E-23 3.7E-28 214.5 -18.9 224 182-413 51-301 (361)
98 4a74_A DNA repair and recombin 99.8 1.5E-20 5E-25 178.0 3.3 153 285-474 21-201 (231)
99 1lw7_A Transcriptional regulat 99.8 4E-22 1.4E-26 203.3 -8.1 148 278-427 157-329 (365)
100 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2.9E-19 1E-23 158.6 11.0 87 388-474 41-141 (148)
101 1ewq_A DNA mismatch repair pro 99.8 1E-19 3.5E-24 200.6 9.4 147 258-464 548-704 (765)
102 2ehv_A Hypothetical protein PH 99.8 3.4E-21 1.2E-25 184.7 -2.3 178 261-471 7-206 (251)
103 3thx_A DNA mismatch repair pro 99.8 1.1E-18 3.9E-23 195.5 17.3 159 259-476 630-803 (934)
104 2vf7_A UVRA2, excinuclease ABC 99.8 5.2E-20 1.8E-24 203.9 6.2 170 297-477 270-466 (842)
105 3asz_A Uridine kinase; cytidin 99.8 2.9E-22 1E-26 187.9 -11.8 141 285-458 2-161 (211)
106 1pzn_A RAD51, DNA repair and r 99.8 4.3E-20 1.5E-24 187.0 2.9 158 277-476 118-305 (349)
107 3jvv_A Twitching mobility prot 99.8 1.7E-19 5.8E-24 182.7 5.1 147 264-473 92-246 (356)
108 1pui_A ENGB, probable GTP-bind 99.8 2.2E-20 7.6E-25 174.3 -1.6 169 261-447 4-198 (210)
109 3szr_A Interferon-induced GTP- 99.8 1.1E-20 3.6E-25 204.7 -5.7 181 260-476 10-227 (608)
110 2r6f_A Excinuclease ABC subuni 99.8 1.3E-18 4.4E-23 193.3 10.0 142 313-477 432-591 (972)
111 1rj9_A FTSY, signal recognitio 99.7 5.9E-19 2E-23 175.1 5.4 151 287-461 100-261 (304)
112 2qnr_A Septin-2, protein NEDD5 99.7 5.3E-20 1.8E-24 182.7 -3.1 162 264-459 2-168 (301)
113 2qag_C Septin-7; cell cycle, c 99.7 1.8E-19 6.3E-24 185.9 -0.5 166 259-461 10-180 (418)
114 2w0m_A SSO2452; RECA, SSPF, un 99.7 2.9E-18 9.9E-23 162.1 6.6 165 276-473 9-192 (235)
115 3thx_B DNA mismatch repair pro 99.7 7.8E-19 2.7E-23 196.3 2.7 136 275-466 659-804 (918)
116 1odf_A YGR205W, hypothetical 3 99.7 4.6E-20 1.6E-24 182.0 -6.9 130 287-434 29-169 (290)
117 3kta_B Chromosome segregation 99.7 2.6E-17 8.9E-22 149.8 11.5 78 397-474 62-145 (173)
118 2ygr_A Uvrabc system protein A 99.7 2.3E-17 8E-22 183.9 13.1 125 348-477 466-608 (993)
119 1wb9_A DNA mismatch repair pro 99.7 6.2E-18 2.1E-22 187.4 5.8 162 260-475 577-747 (800)
120 2qag_B Septin-6, protein NEDD5 99.7 1.5E-17 5.2E-22 171.1 4.9 181 260-457 16-218 (427)
121 1nlf_A Regulatory protein REPA 99.7 1.4E-16 4.9E-21 156.0 10.4 151 285-461 26-184 (279)
122 2cvh_A DNA repair and recombin 99.7 1.9E-16 6.6E-21 148.5 10.8 152 276-473 6-185 (220)
123 1zp6_A Hypothetical protein AT 99.7 1.8E-18 6.3E-23 159.2 -4.1 160 285-466 5-168 (191)
124 1s96_A Guanylate kinase, GMP k 99.6 2.6E-17 9.1E-22 155.7 1.0 129 283-463 10-145 (219)
125 1nij_A Hypothetical protein YJ 99.6 4.5E-19 1.6E-23 177.3 -12.5 154 290-460 5-191 (318)
126 3c8u_A Fructokinase; YP_612366 99.6 1.2E-18 4.2E-23 163.3 -11.2 149 286-458 19-183 (208)
127 2qm8_A GTPase/ATPase; G protei 99.6 7E-18 2.4E-22 169.9 -10.2 179 261-446 30-259 (337)
128 1n0w_A DNA repair protein RAD5 99.6 2.3E-15 7.9E-20 143.3 6.9 148 285-473 20-209 (243)
129 2yhs_A FTSY, cell division pro 99.5 6.5E-15 2.2E-19 153.5 7.1 151 279-457 283-448 (503)
130 2rcn_A Probable GTPase ENGC; Y 99.5 6.8E-15 2.3E-19 148.4 4.0 123 277-415 204-329 (358)
131 2bbw_A Adenylate kinase 4, AK4 99.5 3.6E-16 1.2E-20 150.2 -5.2 137 288-446 26-197 (246)
132 2oap_1 GSPE-2, type II secreti 99.5 9.7E-17 3.3E-21 169.8 -10.1 174 277-465 248-458 (511)
133 1sxj_E Activator 1 40 kDa subu 99.5 2.2E-14 7.4E-19 144.6 7.4 139 290-460 37-176 (354)
134 1htw_A HI0065; nucleotide-bind 99.5 1.5E-15 5.2E-20 136.2 -1.8 87 264-359 11-97 (158)
135 2bdt_A BH3686; alpha-beta prot 99.5 2.3E-18 8E-23 158.5 -20.8 154 289-477 2-175 (189)
136 3auy_A DNA double-strand break 99.5 8.7E-14 3E-18 141.9 10.7 74 398-471 279-359 (371)
137 3e70_C DPA, signal recognition 99.5 4.5E-14 1.5E-18 141.3 7.6 164 285-476 125-307 (328)
138 1p9r_A General secretion pathw 99.5 9.1E-17 3.1E-21 165.9 -12.7 128 278-422 158-314 (418)
139 2kjq_A DNAA-related protein; s 99.4 9.8E-14 3.4E-18 123.2 7.5 91 278-457 30-124 (149)
140 3lda_A DNA repair protein RAD5 99.4 8.7E-14 3E-18 142.8 7.3 147 285-474 174-364 (400)
141 3ec2_A DNA replication protein 99.4 1.2E-13 4.1E-18 125.9 5.1 111 283-459 32-144 (180)
142 2x8a_A Nuclear valosin-contain 99.4 5.2E-16 1.8E-20 151.8 -13.4 144 277-443 34-191 (274)
143 2yv5_A YJEQ protein; hydrolase 99.3 5.8E-14 2E-18 139.2 -0.8 117 284-412 160-300 (302)
144 1u0l_A Probable GTPase ENGC; p 99.3 6.8E-13 2.3E-17 131.4 2.0 102 284-386 164-289 (301)
145 1sq5_A Pantothenate kinase; P- 99.2 1.5E-13 5.3E-18 136.5 -4.7 91 259-359 36-151 (308)
146 3lnc_A Guanylate kinase, GMP k 99.2 4.4E-14 1.5E-18 134.2 -8.6 38 277-314 15-53 (231)
147 3tr0_A Guanylate kinase, GMP k 99.2 1.1E-11 3.8E-16 114.7 6.8 72 283-358 1-73 (205)
148 1udx_A The GTP-binding protein 99.2 2.7E-12 9.2E-17 132.3 1.6 153 279-456 147-306 (416)
149 1ls1_A Signal recognition part 99.2 5.9E-11 2E-15 117.1 10.5 142 261-455 77-219 (295)
150 2px0_A Flagellar biosynthesis 99.2 3.9E-11 1.3E-15 118.4 8.9 137 287-476 103-245 (296)
151 1vma_A Cell division protein F 99.2 4.6E-11 1.6E-15 118.3 9.0 99 281-428 96-197 (306)
152 1cke_A CK, MSSA, protein (cyti 99.2 4.4E-13 1.5E-17 126.4 -5.9 129 288-428 4-151 (227)
153 3euj_A Chromosome partition pr 99.2 1.1E-11 3.7E-16 129.6 3.9 54 277-331 18-71 (483)
154 1in4_A RUVB, holliday junction 99.1 5.8E-14 2E-18 141.1 -15.1 162 261-446 19-193 (334)
155 4e22_A Cytidylate kinase; P-lo 99.1 5.3E-12 1.8E-16 121.7 -1.3 72 287-358 25-114 (252)
156 3a00_A Guanylate kinase, GMP k 99.1 7.1E-12 2.4E-16 115.0 -1.1 127 289-425 1-169 (186)
157 1iy2_A ATP-dependent metallopr 99.1 1.3E-13 4.3E-18 134.8 -14.4 152 262-442 51-222 (278)
158 1t9h_A YLOQ, probable GTPase E 99.1 7.2E-12 2.5E-16 123.9 -2.0 73 284-358 168-248 (307)
159 2dr3_A UPF0273 protein PH0284; 99.1 6.5E-11 2.2E-15 112.4 4.1 167 277-472 10-196 (247)
160 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 5.2E-14 1.8E-18 143.8 -19.4 160 285-476 16-203 (392)
161 3k1j_A LON protease, ATP-depen 99.0 1.2E-11 3.9E-16 134.0 -2.1 157 276-444 47-227 (604)
162 1ixz_A ATP-dependent metallopr 99.0 2.2E-13 7.6E-18 131.1 -14.7 153 261-442 26-198 (254)
163 1oix_A RAS-related protein RAB 99.0 5.4E-11 1.9E-15 109.2 1.3 141 291-444 31-188 (191)
164 1qhl_A Protein (cell division 98.9 1.8E-11 6.2E-16 116.0 -4.5 75 260-345 9-91 (227)
165 2zr9_A Protein RECA, recombina 98.9 2.2E-09 7.5E-14 108.2 10.3 36 285-320 57-92 (349)
166 2r6a_A DNAB helicase, replicat 98.9 7.8E-10 2.7E-14 115.6 6.7 176 277-474 191-400 (454)
167 2ius_A DNA translocase FTSK; n 98.9 5.4E-11 1.8E-15 125.2 -3.5 158 281-459 159-343 (512)
168 3ney_A 55 kDa erythrocyte memb 98.9 1.1E-10 3.9E-15 107.9 -1.5 73 284-362 14-99 (197)
169 1svm_A Large T antigen; AAA+ f 98.8 3.3E-11 1.1E-15 122.6 -8.5 137 277-428 157-312 (377)
170 2qt1_A Nicotinamide riboside k 98.8 9.4E-10 3.2E-14 102.2 1.6 55 281-361 13-67 (207)
171 1kgd_A CASK, peripheral plasma 98.8 1.7E-10 5.9E-15 105.1 -3.5 71 287-361 3-84 (180)
172 2f9l_A RAB11B, member RAS onco 98.8 2.6E-09 8.7E-14 98.3 4.0 137 291-445 7-165 (199)
173 2dy1_A Elongation factor G; tr 98.8 2.6E-09 8.9E-14 116.7 3.9 135 283-461 3-139 (665)
174 3nwj_A ATSK2; P loop, shikimat 98.7 2.4E-09 8.4E-14 102.8 -0.4 52 260-313 17-72 (250)
175 2ce7_A Cell division protein F 98.6 5.4E-08 1.8E-12 101.8 9.0 114 277-461 39-167 (476)
176 4eun_A Thermoresistant glucoki 98.6 3.9E-09 1.3E-13 97.6 0.3 71 282-357 22-93 (200)
177 3t34_A Dynamin-related protein 98.6 5.1E-08 1.8E-12 98.5 7.9 161 277-456 25-212 (360)
178 2qtf_A Protein HFLX, GTP-bindi 98.6 3.5E-08 1.2E-12 100.0 6.5 141 291-445 181-351 (364)
179 3uie_A Adenylyl-sulfate kinase 98.6 1.8E-09 6.1E-14 99.9 -3.3 52 276-328 12-65 (200)
180 1zu4_A FTSY; GTPase, signal re 98.6 2E-08 6.7E-13 100.0 3.7 80 279-358 95-185 (320)
181 2j41_A Guanylate kinase; GMP, 98.6 1.4E-08 4.9E-13 93.6 2.3 62 284-348 1-62 (207)
182 3tau_A Guanylate kinase, GMP k 98.6 1.1E-08 3.9E-13 95.2 1.5 67 287-356 6-83 (208)
183 2dhr_A FTSH; AAA+ protein, hex 98.5 2.4E-09 8.3E-14 112.6 -5.3 139 262-429 42-188 (499)
184 3cr8_A Sulfate adenylyltranfer 98.5 5.1E-09 1.7E-13 111.5 -3.2 71 285-360 365-447 (552)
185 3vaa_A Shikimate kinase, SK; s 98.5 4.8E-08 1.6E-12 90.1 3.4 45 269-313 5-49 (199)
186 3kta_A Chromosome segregation 98.4 5.8E-08 2E-12 87.9 1.6 66 280-346 18-89 (182)
187 2e87_A Hypothetical protein PH 98.4 1.1E-06 3.9E-11 88.6 10.6 62 397-459 229-293 (357)
188 2xau_A PRE-mRNA-splicing facto 98.4 5.2E-07 1.8E-11 100.1 8.5 67 397-463 188-257 (773)
189 3ice_A Transcription terminati 98.3 9.7E-08 3.3E-12 96.2 0.4 55 258-314 131-199 (422)
190 3hr8_A Protein RECA; alpha and 98.3 1.8E-06 6.1E-11 86.9 9.6 58 285-345 57-115 (356)
191 1jjv_A Dephospho-COA kinase; P 98.3 3.9E-07 1.3E-11 84.2 4.3 70 400-472 60-132 (206)
192 4a1f_A DNAB helicase, replicat 98.3 1.8E-06 6.3E-11 86.2 8.6 108 277-431 34-141 (338)
193 1knq_A Gluconate kinase; ALFA/ 98.2 1.8E-07 6E-12 84.1 0.3 38 287-328 6-43 (175)
194 1rz3_A Hypothetical protein rb 98.2 2.8E-07 9.5E-12 85.2 1.5 48 285-332 18-65 (201)
195 2ffh_A Protein (FFH); SRP54, s 98.2 3.4E-06 1.2E-10 86.8 9.7 163 261-456 77-246 (425)
196 3kl4_A SRP54, signal recogniti 98.2 1.7E-06 5.9E-11 89.2 7.1 39 288-326 96-134 (433)
197 1fnn_A CDC6P, cell division co 98.2 7.6E-06 2.6E-10 82.5 11.7 45 416-461 124-172 (389)
198 2vp4_A Deoxynucleoside kinase; 98.2 4.2E-07 1.4E-11 85.8 2.2 65 282-350 13-87 (230)
199 2z43_A DNA repair and recombin 98.1 1E-06 3.5E-11 87.7 3.6 29 285-313 103-131 (324)
200 3tqc_A Pantothenate kinase; bi 98.1 5.1E-07 1.7E-11 89.7 1.1 45 276-320 73-125 (321)
201 1sxj_C Activator 1 40 kDa subu 98.0 1.5E-06 5.2E-11 86.8 1.6 43 276-318 31-75 (340)
202 3b9p_A CG5977-PA, isoform A; A 97.9 4.3E-05 1.5E-09 74.4 11.2 69 402-470 98-186 (297)
203 1v5w_A DMC1, meiotic recombina 97.9 4.8E-06 1.7E-10 83.5 4.4 28 285-312 118-145 (343)
204 2z4s_A Chromosomal replication 97.9 1.2E-05 4.2E-10 83.3 7.3 42 417-458 194-237 (440)
205 3m6a_A ATP-dependent protease 97.9 2.5E-06 8.4E-11 91.0 1.5 79 263-345 86-164 (543)
206 3lxx_A GTPase IMAP family memb 97.9 2.8E-05 9.6E-10 73.4 8.3 29 291-319 31-59 (239)
207 1mky_A Probable GTP-binding pr 97.9 9E-06 3.1E-10 84.3 5.1 70 290-359 181-263 (439)
208 1ypw_A Transitional endoplasmi 97.8 2.5E-06 8.5E-11 95.1 0.3 32 284-315 233-264 (806)
209 3bh0_A DNAB-like replicative h 97.8 3.8E-05 1.3E-09 76.0 8.6 36 277-312 56-91 (315)
210 2qby_A CDC6 homolog 1, cell di 97.8 5.3E-06 1.8E-10 83.3 2.3 30 287-316 43-72 (386)
211 1f6b_A SAR1; gtpases, N-termin 97.8 5.5E-06 1.9E-10 75.9 2.0 58 267-327 6-71 (198)
212 2pez_A Bifunctional 3'-phospho 97.8 3.7E-06 1.3E-10 75.7 0.8 40 287-327 3-44 (179)
213 2p67_A LAO/AO transport system 97.8 3.4E-06 1.2E-10 84.6 0.4 51 277-327 44-94 (341)
214 1l8q_A Chromosomal replication 97.8 4E-05 1.4E-09 75.8 8.0 29 288-316 36-64 (324)
215 1kag_A SKI, shikimate kinase I 97.8 9.6E-06 3.3E-10 72.3 3.0 33 288-324 3-35 (173)
216 3llm_A ATP-dependent RNA helic 97.8 3.1E-05 1.1E-09 73.0 6.6 140 285-460 72-222 (235)
217 4eaq_A DTMP kinase, thymidylat 97.7 7.8E-06 2.7E-10 77.2 2.1 43 279-322 13-58 (229)
218 1lv7_A FTSH; alpha/beta domain 97.7 0.00015 5.2E-09 69.0 11.0 45 278-326 36-80 (257)
219 1m7g_A Adenylylsulfate kinase; 97.7 5.6E-06 1.9E-10 76.8 0.2 43 284-326 20-64 (211)
220 2eyu_A Twitching motility prot 97.7 5.2E-08 1.8E-12 94.2 -14.4 74 385-460 158-242 (261)
221 2www_A Methylmalonic aciduria 97.7 1.1E-05 3.7E-10 81.2 1.5 42 287-328 72-113 (349)
222 1ega_A Protein (GTP-binding pr 97.7 3.3E-05 1.1E-09 76.0 5.0 141 288-461 7-162 (301)
223 2qor_A Guanylate kinase; phosp 97.6 8.2E-06 2.8E-10 75.2 0.6 30 285-314 8-37 (204)
224 2w58_A DNAI, primosome compone 97.6 5.7E-05 1.9E-09 69.1 6.2 27 290-316 55-81 (202)
225 3cf0_A Transitional endoplasmi 97.6 0.0001 3.5E-09 72.3 7.7 32 283-314 43-74 (301)
226 1m2o_B GTP-binding protein SAR 97.6 3.4E-05 1.2E-09 69.9 3.5 50 277-327 12-69 (190)
227 3bos_A Putative DNA replicatio 97.5 3.3E-05 1.1E-09 72.0 3.1 28 288-315 51-78 (242)
228 3r20_A Cytidylate kinase; stru 97.5 5.6E-06 1.9E-10 78.4 -2.3 70 288-357 8-95 (233)
229 1sxj_D Activator 1 41 kDa subu 97.5 2.3E-05 7.9E-10 77.9 1.8 43 417-460 133-175 (353)
230 3h4m_A Proteasome-activating n 97.5 0.00023 8E-09 68.6 8.8 28 286-313 48-75 (285)
231 2gj8_A MNME, tRNA modification 97.5 4.3E-05 1.5E-09 68.2 3.3 27 287-313 2-28 (172)
232 4fcw_A Chaperone protein CLPB; 97.5 0.00019 6.5E-09 70.0 8.0 31 290-320 48-78 (311)
233 1y63_A LMAJ004144AAA protein; 97.5 5.6E-05 1.9E-09 68.4 3.5 32 281-312 2-33 (184)
234 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 6.6E-05 2.3E-09 65.8 3.7 31 280-311 15-45 (149)
235 1j8m_F SRP54, signal recogniti 97.4 2.6E-05 8.9E-10 76.6 1.1 62 262-329 76-138 (297)
236 3n70_A Transport activator; si 97.4 0.00046 1.6E-08 59.8 8.6 41 417-458 76-116 (145)
237 1njg_A DNA polymerase III subu 97.4 0.00022 7.6E-09 65.8 6.5 44 416-460 125-168 (250)
238 2yvu_A Probable adenylyl-sulfa 97.3 6.4E-05 2.2E-09 67.9 2.1 37 285-321 9-45 (186)
239 2jaq_A Deoxyguanosine kinase; 97.3 1.1E-05 3.9E-10 73.6 -3.5 22 291-312 2-23 (205)
240 1u94_A RECA protein, recombina 97.3 0.00064 2.2E-08 68.3 9.0 37 277-314 49-88 (356)
241 3t61_A Gluconokinase; PSI-biol 97.2 8.8E-05 3E-09 67.9 1.6 34 289-326 18-51 (202)
242 2wji_A Ferrous iron transport 97.2 0.00023 7.7E-09 62.7 4.2 24 291-314 5-28 (165)
243 2ohf_A Protein OLA1, GTP-bindi 97.2 0.00018 6.1E-09 73.2 3.9 41 285-325 18-69 (396)
244 2qag_A Septin-2, protein NEDD5 97.2 3.4E-05 1.2E-09 77.9 -1.4 56 258-322 15-70 (361)
245 2p5t_B PEZT; postsegregational 97.2 0.00012 4E-09 70.0 2.0 41 285-327 28-68 (253)
246 3uk6_A RUVB-like 2; hexameric 97.1 0.00073 2.5E-08 67.5 7.8 38 287-324 68-105 (368)
247 2wjg_A FEOB, ferrous iron tran 97.1 0.00019 6.4E-09 64.3 2.9 22 291-312 9-30 (188)
248 1ex7_A Guanylate kinase; subst 97.1 0.00014 4.7E-09 66.3 1.9 46 291-338 3-61 (186)
249 3dm5_A SRP54, signal recogniti 97.1 0.0032 1.1E-07 64.8 12.3 35 288-322 99-133 (443)
250 2q6t_A DNAB replication FORK h 97.1 0.00082 2.8E-08 69.6 7.7 39 277-315 188-226 (444)
251 1np6_A Molybdopterin-guanine d 97.1 0.00023 7.8E-09 64.2 2.9 38 289-326 6-46 (174)
252 3lxw_A GTPase IMAP family memb 97.0 0.0011 3.6E-08 63.0 7.4 24 291-314 23-46 (247)
253 2if2_A Dephospho-COA kinase; a 97.0 0.00026 9E-09 64.7 2.8 21 291-311 3-23 (204)
254 3qks_A DNA double-strand break 97.0 0.00036 1.2E-08 64.3 3.7 29 281-310 16-44 (203)
255 2ga8_A Hypothetical 39.9 kDa p 97.0 0.00014 4.8E-09 72.7 0.8 37 277-313 10-48 (359)
256 3d8b_A Fidgetin-like protein 1 97.0 0.0026 9E-08 63.7 10.1 27 287-313 115-141 (357)
257 3syl_A Protein CBBX; photosynt 97.0 0.0057 1.9E-07 59.3 12.3 27 288-314 66-92 (309)
258 2zej_A Dardarin, leucine-rich 97.0 0.00036 1.2E-08 62.6 3.3 25 291-315 4-28 (184)
259 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0039 1.3E-07 58.9 10.4 27 287-313 37-63 (262)
260 1qhx_A CPT, protein (chloramph 96.9 0.00045 1.5E-08 61.5 3.6 27 288-314 2-28 (178)
261 3cm0_A Adenylate kinase; ATP-b 96.9 0.00033 1.1E-08 62.9 2.5 27 287-313 2-28 (186)
262 2v1u_A Cell division control p 96.9 0.0005 1.7E-08 68.8 4.1 29 287-315 42-70 (387)
263 4dcu_A GTP-binding protein ENG 96.9 0.00049 1.7E-08 71.5 4.1 56 403-461 88-144 (456)
264 3kb2_A SPBC2 prophage-derived 96.8 0.00058 2E-08 60.2 3.2 25 290-314 2-26 (173)
265 4ag6_A VIRB4 ATPase, type IV s 96.8 0.00058 2E-08 69.3 3.6 45 417-461 262-310 (392)
266 2chg_A Replication factor C sm 96.8 0.0021 7.2E-08 58.4 7.0 43 416-459 101-143 (226)
267 1uf9_A TT1252 protein; P-loop, 96.8 0.00051 1.8E-08 62.4 2.6 33 289-326 8-40 (203)
268 3ihw_A Centg3; RAS, centaurin, 96.8 0.0013 4.6E-08 58.9 5.3 36 291-326 22-66 (184)
269 1kht_A Adenylate kinase; phosp 96.7 0.00072 2.5E-08 60.7 3.4 27 288-314 2-28 (192)
270 1q3t_A Cytidylate kinase; nucl 96.7 0.00074 2.5E-08 63.5 3.5 28 285-312 12-39 (236)
271 2ewv_A Twitching motility prot 96.7 0.00057 1.9E-08 69.1 2.8 58 407-470 199-256 (372)
272 3trf_A Shikimate kinase, SK; a 96.7 0.00079 2.7E-08 60.3 3.4 26 288-313 4-29 (185)
273 1gtv_A TMK, thymidylate kinase 96.7 0.00023 7.9E-09 65.4 -0.3 26 291-316 2-27 (214)
274 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.011 3.6E-07 58.4 11.8 28 286-313 42-69 (322)
275 1xp8_A RECA protein, recombina 96.7 0.0079 2.7E-07 60.5 10.9 29 285-313 70-98 (366)
276 2b8t_A Thymidine kinase; deoxy 96.7 0.0016 5.6E-08 60.9 5.4 50 417-470 89-149 (223)
277 3iij_A Coilin-interacting nucl 96.7 0.00066 2.3E-08 60.7 2.6 27 287-313 9-35 (180)
278 2v54_A DTMP kinase, thymidylat 96.7 0.00094 3.2E-08 60.7 3.7 26 288-313 3-28 (204)
279 3zvl_A Bifunctional polynucleo 96.6 0.0069 2.4E-07 62.0 10.3 30 284-313 253-282 (416)
280 2rhm_A Putative kinase; P-loop 96.6 0.00083 2.8E-08 60.5 3.0 27 287-313 3-29 (193)
281 3lw7_A Adenylate kinase relate 96.6 0.00086 3E-08 58.9 3.0 19 291-309 3-21 (179)
282 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0017 5.7E-08 64.1 5.3 28 285-312 119-146 (331)
283 3bgw_A DNAB-like replicative h 96.6 0.0035 1.2E-07 64.8 7.9 36 278-313 186-221 (444)
284 1fzq_A ADP-ribosylation factor 96.6 0.00079 2.7E-08 60.2 2.6 36 290-325 17-60 (181)
285 1gvn_B Zeta; postsegregational 96.6 0.0011 3.7E-08 64.6 3.6 36 287-324 31-66 (287)
286 3t15_A Ribulose bisphosphate c 96.6 0.0042 1.5E-07 60.4 7.9 27 287-313 34-60 (293)
287 3co5_A Putative two-component 96.6 0.006 2E-07 52.5 8.0 28 287-314 25-52 (143)
288 2c95_A Adenylate kinase 1; tra 96.6 0.0011 3.9E-08 59.7 3.4 27 287-313 7-33 (196)
289 1jal_A YCHF protein; nucleotid 96.6 0.0016 5.5E-08 65.4 4.7 36 289-324 2-48 (363)
290 2wwf_A Thymidilate kinase, put 96.5 0.0012 4.2E-08 60.3 3.5 27 287-313 8-34 (212)
291 1nn5_A Similar to deoxythymidy 96.5 0.0014 4.7E-08 60.1 3.5 28 286-313 6-33 (215)
292 1vht_A Dephospho-COA kinase; s 96.5 0.0011 3.8E-08 61.2 2.9 24 288-311 3-26 (218)
293 2bwj_A Adenylate kinase 5; pho 96.5 0.00064 2.2E-08 61.5 1.1 29 285-313 8-36 (199)
294 2qby_B CDC6 homolog 3, cell di 96.5 0.0022 7.6E-08 64.2 5.1 26 288-313 44-69 (384)
295 1ko7_A HPR kinase/phosphatase; 96.4 0.0014 4.9E-08 64.4 3.4 47 277-324 133-183 (314)
296 2plr_A DTMP kinase, probable t 96.4 0.0014 4.7E-08 59.9 3.0 28 288-315 3-30 (213)
297 1via_A Shikimate kinase; struc 96.4 0.0012 4.1E-08 58.7 2.5 23 291-313 6-28 (175)
298 1ly1_A Polynucleotide kinase; 96.4 0.0016 5.6E-08 57.6 3.1 22 290-311 3-24 (181)
299 1lw7_A Transcriptional regulat 96.3 0.00014 4.7E-09 73.4 -4.8 71 399-469 258-340 (365)
300 2ze6_A Isopentenyl transferase 96.3 0.0016 5.5E-08 62.0 2.9 23 291-313 3-25 (253)
301 1jr3_A DNA polymerase III subu 96.3 0.0065 2.2E-07 60.4 7.6 42 417-459 119-160 (373)
302 2qp9_X Vacuolar protein sortin 96.3 0.014 4.9E-07 58.3 10.0 27 287-313 82-108 (355)
303 2vli_A Antibiotic resistance p 96.3 0.0015 5.3E-08 58.2 2.5 27 287-313 3-29 (183)
304 1tev_A UMP-CMP kinase; ploop, 96.3 0.0018 6E-08 58.2 2.9 25 289-313 3-27 (196)
305 1xjc_A MOBB protein homolog; s 96.3 0.0015 5.2E-08 58.4 2.3 35 290-324 5-42 (169)
306 1aky_A Adenylate kinase; ATP:A 96.3 0.0023 7.8E-08 59.2 3.6 27 287-313 2-28 (220)
307 2lkc_A Translation initiation 96.3 0.0049 1.7E-07 54.1 5.6 26 287-312 6-31 (178)
308 1nks_A Adenylate kinase; therm 96.2 0.002 6.7E-08 57.8 3.0 24 291-314 3-26 (194)
309 3auy_A DNA double-strand break 96.2 0.0022 7.6E-08 64.6 3.2 31 279-310 16-46 (371)
310 3cbq_A GTP-binding protein REM 96.2 0.0031 1E-07 57.2 3.8 22 291-312 25-46 (195)
311 2z0h_A DTMP kinase, thymidylat 96.1 0.0025 8.6E-08 57.4 3.1 24 291-314 2-25 (197)
312 1zuh_A Shikimate kinase; alpha 96.1 0.0027 9.2E-08 56.0 3.3 25 289-313 7-31 (168)
313 2cdn_A Adenylate kinase; phosp 96.1 0.003 1E-07 57.5 3.6 26 288-313 19-44 (201)
314 1zd8_A GTP:AMP phosphotransfer 96.1 0.0027 9.2E-08 59.1 3.3 27 287-313 5-31 (227)
315 3fb4_A Adenylate kinase; psych 96.1 0.0027 9.1E-08 58.4 3.1 23 291-313 2-24 (216)
316 3ake_A Cytidylate kinase; CMP 96.1 0.0026 8.8E-08 57.9 3.0 23 291-313 4-26 (208)
317 2iyv_A Shikimate kinase, SK; t 96.1 0.0026 8.8E-08 56.9 2.9 24 290-313 3-26 (184)
318 1a7j_A Phosphoribulokinase; tr 96.1 0.0019 6.6E-08 62.9 2.2 26 288-313 4-29 (290)
319 1qf9_A UMP/CMP kinase, protein 96.1 0.0026 9E-08 56.9 2.9 25 289-313 6-30 (194)
320 1zak_A Adenylate kinase; ATP:A 96.1 0.0028 9.7E-08 58.7 3.0 27 288-314 4-30 (222)
321 1e6c_A Shikimate kinase; phosp 96.0 0.0029 1E-07 55.7 3.0 24 290-313 3-26 (173)
322 3pxi_A Negative regulator of g 96.0 0.012 4E-07 65.1 8.4 24 291-314 523-546 (758)
323 2erx_A GTP-binding protein DI- 96.0 0.0055 1.9E-07 53.2 4.7 21 291-311 5-25 (172)
324 1ukz_A Uridylate kinase; trans 96.0 0.0031 1.1E-07 57.4 3.1 26 288-313 14-39 (203)
325 3dl0_A Adenylate kinase; phosp 96.0 0.0032 1.1E-07 57.9 3.1 23 291-313 2-24 (216)
326 2pt5_A Shikimate kinase, SK; a 96.0 0.0033 1.1E-07 55.1 3.1 23 291-313 2-24 (168)
327 2pbr_A DTMP kinase, thymidylat 96.0 0.0033 1.1E-07 56.3 3.1 24 291-314 2-25 (195)
328 2grj_A Dephospho-COA kinase; T 96.0 0.0034 1.2E-07 57.3 3.1 23 290-312 13-35 (192)
329 3hu3_A Transitional endoplasmi 96.0 0.017 5.7E-07 60.4 8.8 28 286-313 235-262 (489)
330 3q72_A GTP-binding protein RAD 96.0 0.0034 1.2E-07 54.5 2.9 23 291-313 4-26 (166)
331 3k53_A Ferrous iron transport 95.9 0.0033 1.1E-07 60.3 3.0 24 291-314 5-28 (271)
332 1hqc_A RUVB; extended AAA-ATPa 95.9 0.025 8.5E-07 55.1 9.5 26 288-313 37-62 (324)
333 1z2a_A RAS-related protein RAB 95.9 0.0036 1.2E-07 54.2 3.0 22 291-312 7-28 (168)
334 3pfi_A Holliday junction ATP-d 95.9 0.032 1.1E-06 54.8 10.1 25 290-314 56-80 (338)
335 3u61_B DNA polymerase accessor 95.9 0.026 9E-07 55.1 9.3 43 417-460 105-148 (324)
336 2nzj_A GTP-binding protein REM 95.9 0.0043 1.5E-07 54.3 3.2 23 291-313 6-28 (175)
337 1uj2_A Uridine-cytidine kinase 95.8 0.004 1.4E-07 59.0 3.1 24 290-313 23-46 (252)
338 3cmw_A Protein RECA, recombina 95.8 0.019 6.6E-07 68.0 9.4 35 286-320 729-763 (1706)
339 2ged_A SR-beta, signal recogni 95.8 0.004 1.4E-07 55.7 2.9 27 288-314 47-73 (193)
340 1kao_A RAP2A; GTP-binding prot 95.8 0.0041 1.4E-07 53.7 2.9 22 291-312 5-26 (167)
341 2zan_A Vacuolar protein sortin 95.8 0.036 1.2E-06 57.1 10.5 28 286-313 164-191 (444)
342 3tlx_A Adenylate kinase 2; str 95.8 0.0041 1.4E-07 58.7 3.1 27 287-313 27-53 (243)
343 3iby_A Ferrous iron transport 95.8 0.0049 1.7E-07 58.8 3.7 23 291-313 3-25 (256)
344 3q85_A GTP-binding protein REM 95.8 0.0046 1.6E-07 53.8 3.2 23 291-313 4-26 (169)
345 2ce2_X GTPase HRAS; signaling 95.8 0.0041 1.4E-07 53.5 2.8 22 291-312 5-26 (166)
346 2dby_A GTP-binding protein; GD 95.8 0.0039 1.3E-07 62.8 3.0 22 291-312 3-24 (368)
347 2dyk_A GTP-binding protein; GT 95.8 0.0045 1.5E-07 53.3 2.9 23 291-313 3-25 (161)
348 1u8z_A RAS-related protein RAL 95.8 0.0045 1.5E-07 53.4 3.0 22 291-312 6-27 (168)
349 1g16_A RAS-related protein SEC 95.8 0.0044 1.5E-07 53.8 2.8 23 291-313 5-27 (170)
350 3a4m_A L-seryl-tRNA(SEC) kinas 95.7 0.0046 1.6E-07 59.0 3.0 26 288-313 3-28 (260)
351 1z0j_A RAB-22, RAS-related pro 95.7 0.0048 1.6E-07 53.6 2.9 23 291-313 8-30 (170)
352 1ek0_A Protein (GTP-binding pr 95.7 0.0048 1.7E-07 53.4 3.0 23 291-313 5-27 (170)
353 1c1y_A RAS-related protein RAP 95.7 0.0049 1.7E-07 53.3 3.0 22 291-312 5-26 (167)
354 1z08_A RAS-related protein RAB 95.7 0.0048 1.7E-07 53.6 2.9 22 291-312 8-29 (170)
355 3tw8_B RAS-related protein RAB 95.7 0.0051 1.7E-07 54.0 3.0 22 291-312 11-32 (181)
356 1ky3_A GTP-binding protein YPT 95.7 0.005 1.7E-07 54.1 2.9 23 291-313 10-32 (182)
357 3be4_A Adenylate kinase; malar 95.7 0.0052 1.8E-07 56.8 3.2 26 288-313 4-29 (217)
358 1svi_A GTP-binding protein YSX 95.7 0.005 1.7E-07 55.1 3.0 25 288-312 22-46 (195)
359 2ew1_A RAS-related protein RAB 95.7 0.0098 3.4E-07 54.2 5.0 22 291-312 28-49 (201)
360 1wms_A RAB-9, RAB9, RAS-relate 95.7 0.0051 1.8E-07 53.9 2.9 22 291-312 9-30 (177)
361 1sxj_B Activator 1 37 kDa subu 95.7 0.015 5.2E-07 56.3 6.6 42 417-459 107-148 (323)
362 3pqc_A Probable GTP-binding pr 95.6 0.0053 1.8E-07 54.7 3.0 23 291-313 25-47 (195)
363 2fn4_A P23, RAS-related protei 95.6 0.0051 1.7E-07 54.0 2.8 22 291-312 11-32 (181)
364 3b1v_A Ferrous iron uptake tra 95.6 0.0054 1.9E-07 59.1 3.2 23 291-313 5-27 (272)
365 2f6r_A COA synthase, bifunctio 95.6 0.0051 1.7E-07 59.5 2.9 23 289-311 75-97 (281)
366 3t1o_A Gliding protein MGLA; G 95.6 0.0057 2E-07 54.5 3.1 25 291-315 16-40 (198)
367 3a8t_A Adenylate isopentenyltr 95.6 0.0062 2.1E-07 60.4 3.5 28 287-314 38-65 (339)
368 3t5d_A Septin-7; GTP-binding p 95.6 0.0053 1.8E-07 59.0 3.0 23 291-313 10-32 (274)
369 1r2q_A RAS-related protein RAB 95.6 0.0058 2E-07 52.9 3.0 22 291-312 8-29 (170)
370 2r8r_A Sensor protein; KDPD, P 95.6 0.0085 2.9E-07 56.0 4.2 27 287-313 3-30 (228)
371 2cxx_A Probable GTP-binding pr 95.6 0.0059 2E-07 54.2 3.0 23 291-313 3-25 (190)
372 1ojl_A Transcriptional regulat 95.5 0.03 1E-06 54.7 8.2 29 286-314 22-50 (304)
373 3vfd_A Spastin; ATPase, microt 95.5 0.054 1.8E-06 54.6 10.4 27 287-313 146-172 (389)
374 3clv_A RAB5 protein, putative; 95.5 0.0061 2.1E-07 54.4 2.9 23 291-313 9-31 (208)
375 2oil_A CATX-8, RAS-related pro 95.5 0.0062 2.1E-07 54.5 3.0 22 291-312 27-48 (193)
376 4dsu_A GTPase KRAS, isoform 2B 95.5 0.0063 2.1E-07 53.9 2.9 23 291-313 6-28 (189)
377 1m7b_A RND3/RHOE small GTP-bin 95.5 0.01 3.4E-07 52.8 4.3 22 291-312 9-30 (184)
378 3bc1_A RAS-related protein RAB 95.5 0.0063 2.2E-07 54.0 3.0 22 291-312 13-34 (195)
379 1r8s_A ADP-ribosylation factor 95.5 0.0067 2.3E-07 52.4 3.0 21 291-311 2-22 (164)
380 2hxs_A RAB-26, RAS-related pro 95.5 0.0071 2.4E-07 53.0 3.2 22 291-312 8-29 (178)
381 1upt_A ARL1, ADP-ribosylation 95.5 0.0068 2.3E-07 52.7 3.0 24 289-312 7-30 (171)
382 1moz_A ARL1, ADP-ribosylation 95.5 0.0054 1.8E-07 54.2 2.3 24 288-311 17-40 (183)
383 2y8e_A RAB-protein 6, GH09086P 95.5 0.0065 2.2E-07 53.2 2.8 22 291-312 16-37 (179)
384 1e4v_A Adenylate kinase; trans 95.5 0.0066 2.3E-07 55.8 3.0 23 291-313 2-24 (214)
385 2qmh_A HPR kinase/phosphorylas 95.4 0.0087 3E-07 54.8 3.6 35 278-313 24-58 (205)
386 2g6b_A RAS-related protein RAB 95.4 0.0072 2.5E-07 53.1 3.0 22 291-312 12-33 (180)
387 1ak2_A Adenylate kinase isoenz 95.4 0.0087 3E-07 55.9 3.6 26 288-313 15-40 (233)
388 2xb4_A Adenylate kinase; ATP-b 95.4 0.0073 2.5E-07 56.1 3.1 23 291-313 2-24 (223)
389 2h92_A Cytidylate kinase; ross 95.4 0.0065 2.2E-07 55.9 2.6 25 289-313 3-27 (219)
390 1z0f_A RAB14, member RAS oncog 95.4 0.0077 2.6E-07 52.7 3.0 23 291-313 17-39 (179)
391 2a9k_A RAS-related protein RAL 95.4 0.0077 2.6E-07 53.1 3.0 22 291-312 20-41 (187)
392 1wf3_A GTP-binding protein; GT 95.3 0.0078 2.7E-07 58.8 3.2 22 291-312 9-30 (301)
393 2efe_B Small GTP-binding prote 95.3 0.0078 2.7E-07 52.9 2.9 23 291-313 14-36 (181)
394 3con_A GTPase NRAS; structural 95.3 0.0079 2.7E-07 53.6 3.0 22 291-312 23-44 (190)
395 1jbk_A CLPB protein; beta barr 95.3 0.0097 3.3E-07 52.5 3.5 28 287-314 41-68 (195)
396 1ypw_A Transitional endoplasmi 95.3 0.0012 4E-08 73.5 -3.2 46 281-328 503-548 (806)
397 3tmk_A Thymidylate kinase; pho 95.3 0.01 3.5E-07 55.2 3.7 29 287-315 3-31 (216)
398 2bme_A RAB4A, RAS-related prot 95.3 0.0079 2.7E-07 53.2 2.8 22 291-312 12-33 (186)
399 2xtp_A GTPase IMAP family memb 95.3 0.0081 2.8E-07 56.9 3.0 23 291-313 24-46 (260)
400 3t5g_A GTP-binding protein RHE 95.3 0.014 4.9E-07 51.3 4.5 21 291-311 8-28 (181)
401 3umf_A Adenylate kinase; rossm 95.3 0.008 2.7E-07 55.9 2.8 29 285-313 25-53 (217)
402 3d3q_A TRNA delta(2)-isopenten 95.3 0.0085 2.9E-07 59.5 3.1 25 290-314 8-32 (340)
403 1sky_E F1-ATPase, F1-ATP synth 95.3 0.0045 1.6E-07 64.1 1.2 43 278-321 141-183 (473)
404 1ksh_A ARF-like protein 2; sma 95.2 0.0094 3.2E-07 52.9 3.2 26 287-312 16-41 (186)
405 2gf9_A RAS-related protein RAB 95.2 0.0087 3E-07 53.4 3.0 23 291-313 24-46 (189)
406 2bov_A RAla, RAS-related prote 95.2 0.009 3.1E-07 53.8 3.0 22 291-312 16-37 (206)
407 1vg8_A RAS-related protein RAB 95.2 0.009 3.1E-07 53.9 2.9 23 291-313 10-32 (207)
408 3iev_A GTP-binding protein ERA 95.2 0.0091 3.1E-07 58.5 3.2 23 290-312 11-33 (308)
409 2fg5_A RAB-22B, RAS-related pr 95.2 0.0087 3E-07 53.7 2.8 22 291-312 25-46 (192)
410 1nrj_B SR-beta, signal recogni 95.2 0.0091 3.1E-07 54.6 3.0 24 290-313 13-36 (218)
411 3v9p_A DTMP kinase, thymidylat 95.2 0.0092 3.1E-07 55.9 3.0 28 287-314 23-50 (227)
412 3kkq_A RAS-related protein M-R 95.2 0.012 4.2E-07 51.9 3.7 22 291-312 20-41 (183)
413 1zbd_A Rabphilin-3A; G protein 95.2 0.01 3.5E-07 53.5 3.2 23 291-313 10-32 (203)
414 3bwd_D RAC-like GTP-binding pr 95.2 0.011 3.9E-07 51.9 3.4 25 288-312 7-31 (182)
415 2il1_A RAB12; G-protein, GDP, 95.1 0.01 3.4E-07 53.3 3.1 23 291-313 28-50 (192)
416 2gf0_A GTP-binding protein DI- 95.1 0.0092 3.1E-07 53.4 2.8 21 291-311 10-30 (199)
417 1p5z_B DCK, deoxycytidine kina 95.1 0.0084 2.9E-07 57.1 2.6 29 286-314 21-49 (263)
418 1z06_A RAS-related protein RAB 95.1 0.0098 3.4E-07 53.0 2.9 22 291-312 22-43 (189)
419 1mh1_A RAC1; GTP-binding, GTPa 95.1 0.01 3.4E-07 52.4 3.0 21 291-311 7-27 (186)
420 4edh_A DTMP kinase, thymidylat 95.1 0.01 3.5E-07 55.0 3.1 29 287-315 4-32 (213)
421 3exa_A TRNA delta(2)-isopenten 95.1 0.0097 3.3E-07 58.4 3.0 25 289-313 3-27 (322)
422 2cjw_A GTP-binding protein GEM 95.1 0.01 3.5E-07 53.5 3.0 22 291-312 8-29 (192)
423 2h57_A ADP-ribosylation factor 95.1 0.0094 3.2E-07 53.2 2.7 24 290-313 22-45 (190)
424 3i8s_A Ferrous iron transport 95.1 0.0099 3.4E-07 57.2 3.0 23 291-313 5-27 (274)
425 2qu8_A Putative nucleolar GTP- 95.1 0.011 3.7E-07 54.8 3.2 23 290-312 30-52 (228)
426 1q57_A DNA primase/helicase; d 95.1 0.19 6.6E-06 52.4 13.2 36 279-314 232-267 (503)
427 3lv8_A DTMP kinase, thymidylat 95.1 0.012 4E-07 55.5 3.4 28 288-315 26-53 (236)
428 3dz8_A RAS-related protein RAB 95.1 0.01 3.4E-07 53.1 2.8 23 291-313 25-47 (191)
429 3tkl_A RAS-related protein RAB 95.1 0.013 4.5E-07 52.2 3.7 23 291-313 18-40 (196)
430 3oes_A GTPase rhebl1; small GT 95.1 0.01 3.4E-07 53.7 2.8 24 290-313 25-48 (201)
431 1qvr_A CLPB protein; coiled co 95.1 0.03 1E-06 62.7 7.2 35 290-324 589-624 (854)
432 3cmu_A Protein RECA, recombina 95.1 0.02 6.9E-07 68.8 6.1 37 276-312 1066-1104(2050)
433 1gwn_A RHO-related GTP-binding 95.1 0.016 5.6E-07 52.8 4.3 22 291-312 30-51 (205)
434 2a5j_A RAS-related protein RAB 95.0 0.011 3.8E-07 52.9 3.0 22 291-312 23-44 (191)
435 2o52_A RAS-related protein RAB 95.0 0.011 3.9E-07 53.4 3.1 22 291-312 27-48 (200)
436 3a1s_A Iron(II) transport prot 95.0 0.011 3.9E-07 56.3 3.2 23 291-313 7-29 (258)
437 1zj6_A ADP-ribosylation factor 95.0 0.012 4E-07 52.4 3.1 24 288-311 15-38 (187)
438 4dhe_A Probable GTP-binding pr 95.0 0.0059 2E-07 56.0 1.1 25 289-313 29-53 (223)
439 4bas_A ADP-ribosylation factor 95.0 0.012 4.1E-07 52.7 3.1 23 290-312 18-40 (199)
440 1ltq_A Polynucleotide kinase; 95.0 0.011 3.9E-07 57.1 3.1 22 290-311 3-24 (301)
441 4tmk_A Protein (thymidylate ki 95.0 0.013 4.5E-07 54.2 3.4 28 288-315 2-29 (213)
442 3cmu_A Protein RECA, recombina 95.0 0.084 2.9E-06 63.5 10.9 30 286-315 380-409 (2050)
443 2h17_A ADP-ribosylation factor 95.0 0.011 3.7E-07 52.4 2.7 22 291-312 23-44 (181)
444 2bcg_Y Protein YP2, GTP-bindin 95.0 0.011 3.9E-07 53.4 2.8 22 291-312 10-31 (206)
445 3cph_A RAS-related protein SEC 94.9 0.012 4E-07 53.4 3.0 23 290-312 21-43 (213)
446 1zd9_A ADP-ribosylation factor 94.9 0.012 4.2E-07 52.5 3.0 22 291-312 24-45 (188)
447 3llu_A RAS-related GTP-binding 94.9 0.013 4.5E-07 52.7 3.2 24 291-314 22-45 (196)
448 1x3s_A RAS-related protein RAB 94.9 0.012 4.2E-07 52.3 3.0 22 291-312 17-38 (195)
449 2p5s_A RAS and EF-hand domain 94.9 0.012 4.2E-07 53.0 3.0 25 289-313 28-52 (199)
450 2fv8_A H6, RHO-related GTP-bin 94.9 0.012 4E-07 53.6 2.8 33 280-312 16-48 (207)
451 2atv_A RERG, RAS-like estrogen 94.9 0.012 4.2E-07 52.8 2.9 23 290-312 29-51 (196)
452 1a5t_A Delta prime, HOLB; zinc 94.9 0.079 2.7E-06 52.2 9.1 34 282-315 14-50 (334)
453 3reg_A RHO-like small GTPase; 94.9 0.013 4.3E-07 52.6 3.0 22 291-312 25-46 (194)
454 1jwy_B Dynamin A GTPase domain 94.9 0.012 4.1E-07 57.3 3.0 24 291-314 26-49 (315)
455 2r62_A Cell division protease 94.9 0.0052 1.8E-07 58.4 0.4 31 280-312 37-67 (268)
456 3crm_A TRNA delta(2)-isopenten 94.9 0.012 4E-07 58.1 2.9 25 290-314 6-30 (323)
457 2wsm_A Hydrogenase expression/ 94.9 0.012 4.1E-07 53.9 2.8 24 290-313 31-54 (221)
458 3ld9_A DTMP kinase, thymidylat 94.8 0.014 4.7E-07 54.6 3.2 29 287-315 19-47 (223)
459 3cnl_A YLQF, putative uncharac 94.8 0.014 4.9E-07 55.7 3.4 30 290-319 100-129 (262)
460 2ocp_A DGK, deoxyguanosine kin 94.8 0.013 4.3E-07 55.0 2.9 27 288-314 1-27 (241)
461 2f7s_A C25KG, RAS-related prot 94.8 0.014 4.9E-07 53.2 3.2 23 291-313 27-49 (217)
462 2p65_A Hypothetical protein PF 94.8 0.012 4.1E-07 51.8 2.6 29 287-315 41-69 (187)
463 3euj_A Chromosome partition pr 94.8 0.053 1.8E-06 56.4 7.8 76 391-470 371-463 (483)
464 2j1l_A RHO-related GTP-binding 94.8 0.014 4.8E-07 53.4 3.0 22 291-312 36-57 (214)
465 3tqf_A HPR(Ser) kinase; transf 94.8 0.017 6E-07 51.6 3.5 25 287-311 14-38 (181)
466 2iwr_A Centaurin gamma 1; ANK 94.8 0.01 3.5E-07 52.2 2.0 22 291-312 9-30 (178)
467 3c5c_A RAS-like protein 12; GD 94.8 0.014 4.8E-07 52.1 2.9 22 291-312 23-44 (187)
468 2q3h_A RAS homolog gene family 94.8 0.015 5.2E-07 52.2 3.2 23 290-312 21-43 (201)
469 2fu5_C RAS-related protein RAB 94.8 0.0097 3.3E-07 52.5 1.8 22 291-312 10-31 (183)
470 2aka_B Dynamin-1; fusion prote 94.8 0.013 4.5E-07 56.4 2.9 23 291-313 28-50 (299)
471 3def_A T7I23.11 protein; chlor 94.8 0.014 4.7E-07 55.6 3.0 23 291-313 38-60 (262)
472 2b6h_A ADP-ribosylation factor 94.8 0.014 4.9E-07 52.4 2.9 25 287-311 27-51 (192)
473 4djt_A GTP-binding nuclear pro 94.8 0.0097 3.3E-07 54.4 1.8 22 291-312 13-34 (218)
474 1h65_A Chloroplast outer envel 94.7 0.014 4.8E-07 55.7 3.1 23 291-313 41-63 (270)
475 2fh5_B SR-beta, signal recogni 94.7 0.019 6.5E-07 52.2 3.7 24 290-313 8-31 (214)
476 2gco_A H9, RHO-related GTP-bin 94.7 0.014 4.9E-07 52.7 2.8 22 291-312 27-48 (201)
477 3foz_A TRNA delta(2)-isopenten 94.6 0.016 5.6E-07 56.7 3.1 25 289-313 10-34 (316)
478 2x77_A ADP-ribosylation factor 94.6 0.014 4.8E-07 51.9 2.3 24 288-311 21-44 (189)
479 2v3c_C SRP54, signal recogniti 94.5 0.0076 2.6E-07 62.0 0.6 38 289-326 99-136 (432)
480 2atx_A Small GTP binding prote 94.5 0.017 5.8E-07 51.6 2.8 22 291-312 20-41 (194)
481 2g3y_A GTP-binding protein GEM 94.5 0.019 6.4E-07 53.0 3.2 22 291-312 39-60 (211)
482 2zts_A Putative uncharacterize 94.5 0.022 7.6E-07 53.0 3.6 25 286-310 27-51 (251)
483 3l0o_A Transcription terminati 94.5 0.012 4.1E-07 59.3 1.8 33 281-313 167-199 (427)
484 3sr0_A Adenylate kinase; phosp 94.3 0.021 7.3E-07 52.5 3.1 24 291-314 2-25 (206)
485 2hf9_A Probable hydrogenase ni 94.3 0.019 6.6E-07 52.7 2.8 24 290-313 39-62 (226)
486 3cmw_A Protein RECA, recombina 94.3 0.15 5.3E-06 60.5 10.9 37 277-314 369-408 (1706)
487 2i1q_A DNA repair and recombin 94.3 0.02 6.9E-07 56.1 3.0 27 285-311 94-120 (322)
488 2hup_A RAS-related protein RAB 94.3 0.02 6.9E-07 51.8 2.8 22 291-312 31-52 (201)
489 3geh_A MNME, tRNA modification 94.3 0.02 6.7E-07 59.5 3.0 46 286-331 221-278 (462)
490 2orw_A Thymidine kinase; TMTK, 94.3 0.022 7.4E-07 51.4 2.9 26 288-313 2-28 (184)
491 4gzl_A RAS-related C3 botulinu 94.2 0.023 7.8E-07 51.5 3.0 23 289-311 30-52 (204)
492 2orv_A Thymidine kinase; TP4A 94.2 0.19 6.3E-06 47.0 9.2 51 416-471 89-150 (234)
493 2yc2_C IFT27, small RAB-relate 94.2 0.011 3.7E-07 53.3 0.7 22 291-312 22-43 (208)
494 3r7w_A Gtpase1, GTP-binding pr 94.2 0.022 7.6E-07 55.6 3.1 25 288-312 2-26 (307)
495 3cpj_B GTP-binding protein YPT 94.1 0.023 7.9E-07 52.3 2.9 22 291-312 15-36 (223)
496 3eph_A TRNA isopentenyltransfe 94.1 0.022 7.5E-07 57.8 2.9 24 290-313 3-26 (409)
497 2xxa_A Signal recognition part 94.1 0.3 1E-05 50.0 11.5 36 287-322 98-134 (433)
498 3q3j_B RHO-related GTP-binding 94.0 0.025 8.6E-07 51.8 3.0 23 290-312 28-50 (214)
499 2j0v_A RAC-like GTP-binding pr 93.9 0.027 9.3E-07 51.1 2.8 22 291-312 11-32 (212)
500 1puj_A YLQF, conserved hypothe 93.8 0.034 1.2E-06 53.7 3.6 27 289-315 120-146 (282)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2e-92 Score=824.28 Aligned_cols=476 Identities=44% Similarity=0.761 Sum_probs=451.3
Q ss_pred eehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048556 2 ACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGW 81 (478)
Q Consensus 2 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (478)
+|+.++|+|+..++|.++|+|++++|++||+++ ++|++++|+++|++.+++++...+..++..++.++++++++++++|
T Consensus 158 ~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~-~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~ 236 (1321)
T 4f4c_A 158 TCYLYVAEQMNNRLRREFVKSILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSW 236 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHT-CCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG 161 (478)
Q Consensus 82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
.+++++++++|+++++..++.+++++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 237 ~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 316 (1321)
T 4f4c_A 237 QLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKG 316 (1321)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556 162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 241 (478)
...+...+...++..+..++++|+|++++.+|.+++|++++++.++..+..|+..+...+..++++.++++|++++++.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 396 (1321)
T 4f4c_A 317 LFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRK 396 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556 242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 321 (478)
|+.+........+....++|+|+||+|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 397 ~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~ 476 (1321)
T 4f4c_A 397 PVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT 476 (1321)
T ss_dssp CCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEE
T ss_pred ccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCccc
Confidence 65443322222333445789999999999876667999999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556 322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401 (478)
Q Consensus 322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 401 (478)
+||+|+++++.+++|++|+||||+|+||++||||||++|.|+++++++++||+.++++++|+.||+|+||.+||+|.+||
T Consensus 477 idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LS 556 (1321)
T 4f4c_A 477 IDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLS 556 (1321)
T ss_dssp ETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCC
T ss_pred CCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
||||||||||||+++||+|||||||||+||+++|+.+.++|+++.+++|+|+||||++++++||+|+||++|+|+|+
T Consensus 557 GGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~ 633 (1321)
T 4f4c_A 557 GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEV 633 (1321)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999974
No 2
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1e-87 Score=728.17 Aligned_cols=472 Identities=28% Similarity=0.470 Sum_probs=439.4
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...+..++..++.++++++++++++|.
T Consensus 86 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 164 (587)
T 3qf4_A 86 FASYASQNFGADLRRDLFRKVLSFSISNVNRF-HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK 164 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999998 89999999999999999999999998998888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..+++.+...+..+
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (587)
T 3qf4_A 165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS 244 (587)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
......++..++..+..++++++|++++.+|.+++|.++++..+...+..|+..+...+..++++..+++|+.++++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 324 (587)
T 3qf4_A 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKP 324 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999998766
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+.+... .....+...+.|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 325 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i 402 (587)
T 3qf4_A 325 AIEEAD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402 (587)
T ss_dssp SCCCCT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEE
T ss_pred ccCCCC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEE
Confidence 433221 111222344689999999999753 468999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
||+|+.+++.+++|++++||||+|++|++|++||+.++.+..++++++++++.++++++++.+|+|++|.++++|.+|||
T Consensus 403 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482 (587)
T ss_dssp SSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred CCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
|||||++||||++++|+++|||||||+||+++++.+.+.|++..+++|+|+||||+++++.||||++|++|+++|
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~ 557 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAG 557 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999888999999999999999999999999999986
No 3
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1e-87 Score=727.60 Aligned_cols=472 Identities=33% Similarity=0.456 Sum_probs=440.0
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...+..++..++.++++++++++++|+
T Consensus 84 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 162 (578)
T 4a82_A 84 LAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVK 162 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45678899999999999999999999999998 89999999999999999999888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
++++.++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+..+
T Consensus 163 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 242 (578)
T 4a82_A 163 LTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTR 242 (578)
T ss_dssp THHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
..+....+..++..+..++++++|++++..|.+++|.++++..++..+..|+..+...+..+.++..+++|+.++++.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 322 (578)
T 4a82_A 243 WNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888999999999999999999999999999888889999999999999999999999999998766
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+..... +..+.+...+.|+++||+|+|+++ ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 323 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 400 (578)
T 4a82_A 323 DIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400 (578)
T ss_dssp SSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEE
T ss_pred cccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 533221 111222334679999999999753 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
||+|+.+++.+++|++++||||+|++|++|++||+.++.+..++++++++++.++++++++.+|+|++|.+|++|.+|||
T Consensus 401 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSg 480 (578)
T 4a82_A 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG 480 (578)
T ss_dssp TTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCH
T ss_pred CCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
|||||++||||++++|+++|||||||+||+.+++.+.+.+++..+++|+|+||||+++++.||+|++|++|++++
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 555 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999888899999999999999999999999999986
No 4
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.6e-89 Score=794.59 Aligned_cols=475 Identities=36% Similarity=0.597 Sum_probs=425.1
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhcc-CChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKE-THSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGW 81 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (478)
+....+.++..++|.++|+++++.|++||+.. +++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|
T Consensus 817 ~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~ 896 (1321)
T 4f4c_A 817 FMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGW 896 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhH
Confidence 45678899999999999999999999999852 27999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG 161 (478)
Q Consensus 82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
++++++++++|++++...++.++.++...+..+..++....+.|+++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 897 ~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 976 (1321)
T 4f4c_A 897 QMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEA 976 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888877777766666667777778888899999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 048556 162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINV--IFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIE 239 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~ 239 (478)
...+....+...+..+...+++++|++++..+..+.+.+..+ +.+......++..+...+..+.++..+++|++++++
T Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~ 1056 (1321)
T 4f4c_A 977 FIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLR 1056 (1321)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888888888999999998888776654333 222223334666777788899999999999999999
Q ss_pred cCCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccE
Q 048556 240 RKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 319 (478)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 319 (478)
.+++.+... ...+.++..++|+|+||+|+|+++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus 1057 ~~~~~~~~~-~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1135 (1321)
T 4f4c_A 1057 KISKIDSLS-LAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE 1135 (1321)
T ss_dssp CCCSSCTTC-CCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSE
T ss_pred CcccCCCcc-CCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCE
Confidence 876544322 1223334457899999999998766668999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCC
Q 048556 320 VLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK--DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHG 397 (478)
Q Consensus 320 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~--~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g 397 (478)
|++||+|+++++.+++|++|+||||||+||+|||||||++|. ++++++++++|++.++++++|+++|+||||.+||+|
T Consensus 1136 I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G 1215 (1321)
T 4f4c_A 1136 IFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRG 1215 (1321)
T ss_dssp EEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTS
T ss_pred EEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCC
Confidence 999999999999999999999999999999999999999984 568999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 398 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 398 ~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
.+|||||||||||||||+++|+|||||||||+||++||+.|.+.|++..++||+|+||||++++++||||+|||+|+|+|
T Consensus 1216 ~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE 1295 (1321)
T 4f4c_A 1216 TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIE 1295 (1321)
T ss_dssp CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999998
Q ss_pred C
Q 048556 478 K 478 (478)
Q Consensus 478 ~ 478 (478)
+
T Consensus 1296 ~ 1296 (1321)
T 4f4c_A 1296 K 1296 (1321)
T ss_dssp E
T ss_pred E
Confidence 4
No 5
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=9.3e-86 Score=713.05 Aligned_cols=470 Identities=31% Similarity=0.515 Sum_probs=437.6
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...++.++..++.++++++++++++|+
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b5x_A 88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45667899999999999999999999999998 89999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..+++.+...+..+
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b5x_A 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
.......+..++..+..++++++|++++.+|.+|+|++++++.++..+..|+..+...+..++++..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b5x_A 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999998765
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+.+.. ..+.+...+.|+++||+|+|+++ ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 327 ERDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred cCCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 43211 11112223579999999999742 257999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~-~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 401 (478)
||+|+.+++.+++|++++||||+|.+|++|++||+.++. ++.++++++++++.++++++++.+|+|+||.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LS 482 (582)
T 3b5x_A 403 DGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482 (582)
T ss_pred CCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCC
Confidence 999999999999999999999999999999999999987 6778899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
||||||++||||++++|+++|||||||+||+.+++.+.+.|++..+++|+|+||||+++++.||+|++|++|++++
T Consensus 483 gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 558 (582)
T 3b5x_A 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIE 558 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999877899999999999999999999999999986
No 6
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1e-85 Score=714.42 Aligned_cols=473 Identities=40% Similarity=0.636 Sum_probs=436.4
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...+..++..++.+++.++++++++|+
T Consensus 85 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 163 (595)
T 2yl4_A 85 LMQTSGQRIVNRLRTSLFSSILRQEVAFFDKT-RTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPN 163 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHS-CHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 35567899999999999999999999999998 89999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..+++.+...+..+
T Consensus 164 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 243 (595)
T 2yl4_A 164 LATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAF 243 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888889999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
..........++..+..++++++|++++.+|.+|+|+++++..++..+..|+..+...+..++++..+++|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 323 (595)
T 2yl4_A 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREP 323 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999998765
Q ss_pred CcccCCCCCCccCCCCcc-EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556 243 LIDAYDSNGVKLDDIRGD-IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~-i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 321 (478)
+.+... +..+.....++ |+++||+|+|++++++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 324 ~~~~~~-~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 402 (595)
T 2yl4_A 324 KLPFNE-GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTIS 402 (595)
T ss_dssp SSCSSC-SBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEE
T ss_pred ccCCCC-CCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEE
Confidence 432211 11111223457 9999999999753235799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCC
Q 048556 322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG---ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGT 398 (478)
Q Consensus 322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~---~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~ 398 (478)
+||+|+.+++.+++|++++||||+|.+|++|++||+.++.+. .++++++++++.++++++++.+|+|+||.+|++|.
T Consensus 403 ~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~ 482 (595)
T 2yl4_A 403 LDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGV 482 (595)
T ss_dssp ETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSC
T ss_pred ECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCC
Confidence 999999999999999999999999999999999999998765 67889999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 399 ~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+||||||||++|||||+++|+++|||||||+||+.+++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++
T Consensus 483 ~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 561 (595)
T 2yl4_A 483 LLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITE 561 (595)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999999877899999999999999999999999999986
No 7
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4e-87 Score=725.38 Aligned_cols=471 Identities=32% Similarity=0.556 Sum_probs=439.8
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...+..++..++.++++++++++++|+
T Consensus 100 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 178 (598)
T 3qf4_B 100 IMLTLSQDVVFRLRKELFEKLQRVPVGFFDRT-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHS-CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+
T Consensus 179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
..+....+..++..+..++++++|++++..|.+++|.+++++.+...+..|+..+...+..+.++..+++|+.++++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 338 (598)
T 3qf4_B 259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE 338 (598)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888899999999999999999999999888888889999999999999999999999999998765
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+.+... ..+.+...+.|+++||+|+|++ ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 339 ~~~~~~--~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 414 (598)
T 3qf4_B 339 EKDDPD--AVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414 (598)
T ss_dssp CCCCSS--CCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEE
T ss_pred CCCCCC--CCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEE
Confidence 432211 1122233467999999999964 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
||+|+.+++.+++|++++||||+|++|++|++||+.++.+..++++++++++.++++++++.+|+|++|.+|++|.+|||
T Consensus 415 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg 494 (598)
T 3qf4_B 415 DGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQ 494 (598)
T ss_dssp TTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCH
T ss_pred CCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEeeC
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVEK 478 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~~ 478 (478)
|||||++||||++++|+++|||||||+||+.+++.+.+.+++..+++|+|+||||+++++.||+|++|++|+++++
T Consensus 495 Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 570 (598)
T 3qf4_B 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEM 570 (598)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998889999999999999999999999999999874
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.2e-85 Score=712.25 Aligned_cols=470 Identities=33% Similarity=0.533 Sum_probs=437.5
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGWL 82 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (478)
+..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++...+..++..++.+++.++++++++|+
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b60_A 88 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34567899999999999999999999999998 89999999999999999999999999999999999998899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 83 LTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEGL 162 (478)
Q Consensus 83 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 162 (478)
+++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..+++.+...+..+
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b60_A 167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246 (582)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 048556 163 AAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKP 242 (478)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 242 (478)
.......+..++..+..++++++|++++.+|.+|+|++++++.++..+..|+..+...+..++++..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b60_A 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999998765
Q ss_pred CcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 243 LIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
+.+.. ..+.+...+.|+++||+|+|+++ ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 327 EKDEG---KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp SCCCC---CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred CccCC---CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 43211 11112224579999999999742 257999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556 323 DGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401 (478)
Q Consensus 323 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~-~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 401 (478)
||+|+.+++.+++|++++||||+|.+|++|++||+.++. ++.++++++++++.++++++++.+|+|++|.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LS 482 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCC
Confidence 999999999999999999999999999999999999987 6778899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
||||||++||||++++|+++|||||||+||+.+++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 558 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE 558 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999877899999999999999999999999999986
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.7e-85 Score=759.19 Aligned_cols=475 Identities=47% Similarity=0.834 Sum_probs=443.3
Q ss_pred eehHHHHHHHHHHHHHHHHHHHHcCChhhhhccCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 048556 2 ACWIVTGERQAARIRGLYLKTLLRQDIGFFDKETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKGW 81 (478)
Q Consensus 2 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (478)
+++.+.+.++..++|.++|+|++++|+.||+++ ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 130 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~-~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 208 (1284)
T 3g5u_A 130 SFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGW 208 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788999999999999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 048556 82 LLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHEG 161 (478)
Q Consensus 82 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 161 (478)
++++++++++|+++++..++.++.++..++.++..++.++.+.|+++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 209 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~ 288 (1284)
T 3g5u_A 209 KLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKA 288 (1284)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 048556 162 LAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERK 241 (478)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 241 (478)
...+...++..++..+..++++|+|++++..|.+++|.+++++.+......|+..+...+..+.++..+++|++++++.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~ 368 (1284)
T 3g5u_A 289 ITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNK 368 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888888888899999999999999999999999998877777777899999999999999999999999999876
Q ss_pred CCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556 242 PLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321 (478)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 321 (478)
++.+........+....+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 369 ~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~ 448 (1284)
T 3g5u_A 369 PSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS 448 (1284)
T ss_dssp CCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEE
T ss_pred CcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 65432111112223345789999999999864445899999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCC
Q 048556 322 IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLS 401 (478)
Q Consensus 322 ~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LS 401 (478)
+||+|+.+++.+++|++|+||||+|++|++||+|||.+|.++.++++++++++.++++++++.+|+|+||.+|++|.+||
T Consensus 449 i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LS 528 (1284)
T 3g5u_A 449 IDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLS 528 (1284)
T ss_dssp ETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSC
T ss_pred ECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccC
Confidence 99999999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|+||++|+++|
T Consensus 529 gGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~ 604 (1284)
T 3g5u_A 529 GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVE 604 (1284)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998888999999999999999999999999999986
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.9e-79 Score=708.71 Aligned_cols=474 Identities=41% Similarity=0.692 Sum_probs=433.2
Q ss_pred ehHHHHHHHHHHHHHHHHHHHHcCChhhhhc--cCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 048556 3 CWIVTGERQAARIRGLYLKTLLRQDIGFFDK--ETHSGEIIERMSGDTVLIQDSIGEKVGKFIQLLATFIGGFVIALSKG 80 (478)
Q Consensus 3 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~sG~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (478)
+..+.+.++..++|.++|++++++|+.||++ + ++|++++|+++|++.+++.+...+..++..++.+++.+++++.++
T Consensus 772 ~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~-~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~ 850 (1284)
T 3g5u_A 772 TFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKN-TTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYG 850 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999994 4 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 048556 81 WLLTLVMLSSIPAIVLTAGVMSTVITKLASRGQTAYSIAAAVAEQTIGSIRTVASFTGEKQAVAKYNESLTKAYKSGVHE 160 (478)
Q Consensus 81 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 160 (478)
|.+++++++++|++++...+..+++++...+..+..+.....+.|+++|+++||+|++|+.+.++|.+..+...+...+.
T Consensus 851 ~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~ 930 (1284)
T 3g5u_A 851 WQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKK 930 (1284)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888888888899999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 048556 161 GLAAGLGFGAFTFVAFSSYSLAIWFGGKMILEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIER 240 (478)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~ 240 (478)
....+....+...+..+..++++|+|++++..|.+++|.++.++.+......++..+...+..+.++..+++|+.++++.
T Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~ 1010 (1284)
T 3g5u_A 931 AHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEK 1010 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888899999999999999999999998887777777777877777777888999999999999987
Q ss_pred CCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556 241 KPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320 (478)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 320 (478)
+++..........+....+.|+++||+|+|+++++.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|
T Consensus 1011 ~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I 1090 (1284)
T 3g5u_A 1011 TPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090 (1284)
T ss_dssp CCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEE
T ss_pred CCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 76543221111222233568999999999985434579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCC
Q 048556 321 LIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGT 398 (478)
Q Consensus 321 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~ 398 (478)
.+||+|+++++.+++|++++||||+|.+|++||+||+.++.+ ..++++++++++.++++++++.+|+||||.+||+|.
T Consensus 1091 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~ 1170 (1284)
T 3g5u_A 1091 FLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGT 1170 (1284)
T ss_dssp ESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSC
T ss_pred EECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCC
Confidence 999999999999999999999999999999999999999875 368899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 399 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 399 ~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+||||||||++|||||+++|++||||||||+||+.+++.+.+.|++..+++|+|+||||+++++.||||+||++|+++|
T Consensus 1171 ~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEE
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999998888999999999999999999999999999987
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.6e-65 Score=508.36 Aligned_cols=255 Identities=44% Similarity=0.654 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCcccCCCCCCccCCCCccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCC
Q 048556 220 CISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSG 299 (478)
Q Consensus 220 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sG 299 (478)
.+..++++.++++|++++++.+++..... ...+.....+.|+++||+|+|++ +.++|+|+||+|++||++||+||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSC
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCC
Confidence 35567888899999999998655432211 11112223467999999999974 3579999999999999999999999
Q ss_pred CChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHH
Q 048556 300 SGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAA 379 (478)
Q Consensus 300 sGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~ 379 (478)
||||||+++|+|+|+|++|+|.+||.++.+++..++|++|+||||++.+|++||+|||.++.+..++++++++++.+++.
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred HHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 048556 380 KFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLS 459 (478)
Q Consensus 380 ~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 459 (478)
+++..+|+||+|.++++|.+||||||||++|||||+++|++||||||||+||+.+++.|.+.|+++.+++|+|+||||++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred hhhhcCEEEEEeCCEEee
Q 048556 460 TVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 460 ~~~~~d~i~vl~~G~i~~ 477 (478)
++..||+|++|++|+|++
T Consensus 251 ~~~~aD~i~vl~~G~iv~ 268 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVE 268 (306)
T ss_dssp HHHTCSEEEEEETTEEEE
T ss_pred HHHcCCEEEEEECCEEEE
Confidence 999999999999999986
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.4e-56 Score=434.07 Aligned_cols=218 Identities=50% Similarity=0.801 Sum_probs=205.0
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
.+|+++||+|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 369999999999421 2479999999999999999999999999999999999999999999999999998888888899
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 339 IGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 339 i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
|+||||++.+|+.|++||+.++.+..+.++++++++..++.+++..+|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987656778889999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 419 RILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 419 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+++||||||++||+.+++.+++.|+++.+++|+|+|||+++.++.||++++|++|++++
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE 223 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEE
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999998877899999999999988899999999999975
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.7e-55 Score=428.21 Aligned_cols=218 Identities=47% Similarity=0.789 Sum_probs=203.2
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
..|+++||+|+|++.+.+++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++..++...+|+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 359999999999743224699999999999999999999999999999999999987 8999999999988888888999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 339 IGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 339 i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
|+||||++.+|+.|++||+.++.+..+++++.++++..++.+++..+|+|+++.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999986555677888889999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 419 RILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 419 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+++||||||++||+.+++.+++.|+++.+++|+|+|||+++.++.||+|++|++|++++
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~ 233 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVE 233 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEE
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999877899999999999988899999999999975
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=4.3e-55 Score=429.12 Aligned_cols=219 Identities=41% Similarity=0.717 Sum_probs=201.7
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
+.|+++||+|+|++.+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999964212579999999999999999999999999999999999999999999999999988888888889
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 339 IGLVSQEPVLFTSSIKDNINYGKDGASI-AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 339 i~~v~Q~~~lf~~ti~eNl~~~~~~~~~-~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
|+||||++.+|+.|++||+.++.+.... +++.++++..++.++++.+|+|+++.+++.+.+||||||||++|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998654444 667777888889999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
|++||||||||+||+.+++.+++.|+++.+ ++|+|+|||+++.+..||+|++|++|++++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~ 236 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCE 236 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEE
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998754 789999999999988899999999999975
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=3.8e-56 Score=430.25 Aligned_cols=215 Identities=44% Similarity=0.761 Sum_probs=201.8
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++++
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 257999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEecCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556 341 LVSQEPVLFTSSIKDNINYG-KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419 (478)
Q Consensus 341 ~v~Q~~~lf~~ti~eNl~~~-~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ 419 (478)
||||++.+|++|++||+.++ .+..+++++.++++..++.+++..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998 45566778899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 420 ILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 420 ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
++||||||++||+.+++.+++.|+++.+++|+|++||+++.++.||+|++|++|++++
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITG 217 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999998777899999999999988899999999999975
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.4e-53 Score=433.08 Aligned_cols=217 Identities=29% Similarity=0.523 Sum_probs=204.0
Q ss_pred CccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhc
Q 048556 258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRG 337 (478)
Q Consensus 258 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 337 (478)
.+.|+++||+|+|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+++.+++.+.+|+
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 3579999999999632 3579999999999999999999999999999999999998 8999999999999999999999
Q ss_pred ceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 338 KIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
.++||||++.+|+.|++||+.+.. ....++++++++.+++.+++...|.++++.+++.+.+||||||||++|||||+++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998654 3467889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
|++||||||||+||+.++..+.+.|++...++|+|+|||+++.+..||||++|++|+|++
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~ 233 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQ 233 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEE
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998777899999999999888899999999999975
No 17
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.2e-51 Score=395.31 Aligned_cols=203 Identities=26% Similarity=0.471 Sum_probs=184.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|++|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 6 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 58999999999632 35799999999999999999999999999999999999999999999998 49
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556 340 GLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419 (478)
Q Consensus 340 ~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ 419 (478)
+|+||++.+|++|++||+.++.+ ....+..++++..++.+++..+|.+.++.+++.+.+||||||||++|||||+++|+
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999753 23445556677778889999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHH-HHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 420 ILLLDEATSALDAESERVVQEAL-DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 420 ililDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
++||||||++||+.+++.+++.+ ++..+++|+|++||+++.++.||++++|++|++++
T Consensus 151 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~ 209 (229)
T 2pze_A 151 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 209 (229)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEE
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999974 55555789999999999988899999999999875
No 18
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.4e-52 Score=400.49 Aligned_cols=210 Identities=30% Similarity=0.446 Sum_probs=177.4
Q ss_pred EEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh----
Q 048556 261 IELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI---- 335 (478)
Q Consensus 261 i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~---- 335 (478)
|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996422 1369999999999999999999999999999999999999999999999999999887654
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCC-----CCCCHHHHHHHHHHhcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHH
Q 048556 336 RGKIGLVSQEPVLFTS-SIKDNINYGK-----DGASIAEIMAAAELANAAKFIDSLPQGLDTM-VGEHGTQLSGGQKQRI 408 (478)
Q Consensus 336 r~~i~~v~Q~~~lf~~-ti~eNl~~~~-----~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl 408 (478)
|+.++||||++.+|+. |++||+.++. .....++..+ .+.+.++.+ |+... ....+.+||||||||+
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~QRv 154 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRK-----RALECLKMA--ELEERFANHKPNQLSGGQQQRV 154 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHH-----HHHHHHHHT--TCCGGGTTCCGGGSCHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHH-----HHHHHHHHC--CCChhhhhCChhhCCHHHHHHH
Confidence 4569999999999987 9999998742 1122222211 122334433 55543 3677899999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+|||||+.+|++|||||||++||+.+++.+++.|+++.+ ++|+|+|||+++..+.||+|++|++|++++
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999998753 799999999999887799999999999975
No 19
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.8e-51 Score=395.94 Aligned_cols=202 Identities=32% Similarity=0.528 Sum_probs=183.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
|+++|++|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 4 l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 4 ITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp EEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred EEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 8999999999632 35799999999999999999999999999999999999999999999998 499
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556 341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420 (478)
Q Consensus 341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i 420 (478)
||||++.+|..|++||+.++... ..++..++.+..++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|++
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 148 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI 148 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EEcCCCcCCCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999988999999997642 33455666777777788888999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHH---HhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 421 LLLDEATSALDAESERVVQEALD---KIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 421 lilDEpts~LD~~~~~~i~~~l~---~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+||||||++||+.+++.+++.|. +..+++|+|+|||+++.+..||++++|++|++++
T Consensus 149 llLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~ 208 (237)
T 2cbz_A 149 YLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISE 208 (237)
T ss_dssp EEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEE
T ss_pred EEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999994 3445789999999999988899999999999975
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.9e-51 Score=391.88 Aligned_cols=209 Identities=25% Similarity=0.420 Sum_probs=180.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh-hcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI-RGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 338 (478)
-++++|++|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+..++ ++.
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 479999999999999999999999999999999999999999999999999988776654 456
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 339 IGLVSQEPVLFTS-SIKDNINYGK-DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 339 i~~v~Q~~~lf~~-ti~eNl~~~~-~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
++|+||++.+|++ |++||+.++. +....++..+. +.+.++.++ |++...+..+.+||||||||++|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD-----LEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHH-----HHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHH-----HHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 9999999864 22222232222 234455554 46667778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~ 477 (478)
+|+++||||||++||+.+++.+++.|+++. +++|+|++||+++.+. .||++++|++|++++
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 219 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL 219 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998875 5789999999998765 499999999999874
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=9.8e-51 Score=410.59 Aligned_cols=212 Identities=33% Similarity=0.535 Sum_probs=181.5
Q ss_pred cEEEEeEEEECCCCC-CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH---h
Q 048556 260 DIELKDIYFSYPSRP-GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW---I 335 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~-~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~ 335 (478)
-|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..++.++ +
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~ 103 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 599999999996421 246999999999999999999999999999999999999999999999999999988665 4
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 336 RGKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 336 r~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
|+.|+||||++.+|+. |++||+.++.. ..+.++..+. +.+.++.+ |+.........+||||||||++|||
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~-----v~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaIAr 176 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR-----VTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIAR 176 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHH-----HHHHHHHH--TCGGGTTCCTTTSCHHHHHHHHHHH
T ss_pred hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHH
Confidence 7889999999999986 99999998631 1233332221 12233333 6666777888999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEeeC
Q 048556 413 AILKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVEK 478 (478)
Q Consensus 413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~~ 478 (478)
||+.+|++||||||||+||+.+++.+++.|+++. .+.|+|+|||+++.+.. ||||++|++|++++.
T Consensus 177 AL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~ 245 (366)
T 3tui_C 177 ALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 245 (366)
T ss_dssp HTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEC
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999875 37899999999999876 999999999999863
No 22
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=6.1e-51 Score=399.82 Aligned_cols=209 Identities=25% Similarity=0.477 Sum_probs=179.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC--CCCHHHhhc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK--EFQLKWIRG 337 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~ 337 (478)
-|+++||+|+|++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 48999999999642 46999999999999999999999999999999999999999999999999984 334456788
Q ss_pred ceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 338 KIGLVSQEP--VLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 338 ~i~~v~Q~~--~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
.|+||||+| .+|..|++||+.++.. ..+.++..+. +.+.++.+ |++........+||||||||++||||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHH-----HHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhcCCcccCCHHHHHHHHHHHH
Confidence 999999997 4777899999998632 2233333222 23344444 67777778889999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-C-CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIM-I-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+.+|++||||||||+||+.+++.+++.|+++. + ++|+|+|||+++.+.. ||||++|++|++++
T Consensus 158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~ 224 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL 224 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEE
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998875 3 7899999999999876 99999999999975
No 23
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.9e-50 Score=384.37 Aligned_cols=207 Identities=29% Similarity=0.424 Sum_probs=177.9
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH---hh-
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW---IR- 336 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~---~r- 336 (478)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+..+ +|
T Consensus 5 l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 5 LRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 899999999963 57999999999999999999999999999999999999999999999999998876543 33
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 337 GKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
+.++||||++.+|+. |++||+.++.. ....++.. ..+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara 154 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK-----ERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARA 154 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 679999999999875 99999987531 11212111 1233455555 66666777889999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
|+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.++.||++++|++|++++
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 155 LANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219 (224)
T ss_dssp TTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEE
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998875 4789999999999887799999999999975
No 24
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.3e-49 Score=387.54 Aligned_cols=208 Identities=23% Similarity=0.401 Sum_probs=180.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGK 338 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 338 (478)
-++++|++|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. +.+|+.
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999953 479999999999999999999999999999999999999999999999999987764 345778
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCC--C-------------CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCCh
Q 048556 339 IGLVSQEPVLFTS-SIKDNINYGKDG--A-------------SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSG 402 (478)
Q Consensus 339 i~~v~Q~~~lf~~-ti~eNl~~~~~~--~-------------~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSg 402 (478)
++||||++.+|+. |++||+.++... . ..++. ...+.+.++.+ |++........+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHc--CCchhhCCCchhCCH
Confidence 9999999999875 999999986422 1 11111 12234566666 788788888999999
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 403 GQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999998875 47899999999998765 99999999999875
No 25
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2e-49 Score=386.71 Aligned_cols=208 Identities=33% Similarity=0.528 Sum_probs=178.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC--CCCHHHhhc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK--EFQLKWIRG 337 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~ 337 (478)
-|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999953 47999999999999999999999999999999999999999999999999985 334456788
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
.++||||++.+|+. |++||+.++. ...+.++.. ..+.+.++.+ |++........+||||||||++||||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAra 173 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE-----AKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARA 173 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHH
Confidence 89999999999987 9999998852 112222211 1223455555 67667778889999999999999999
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 174 L~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 239 (263)
T 2olj_A 174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE 239 (263)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999998875 47899999999999875 99999999999975
No 26
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1e-49 Score=389.82 Aligned_cols=208 Identities=29% Similarity=0.417 Sum_probs=178.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++|++|.|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..++.+++++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 4899999999963 5799999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC--
Q 048556 340 GLVSQEPVL-FTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK-- 416 (478)
Q Consensus 340 ~~v~Q~~~l-f~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~-- 416 (478)
+|++|++.+ |..|++||+.++.......+..+. +.+.++.+ |+.........+||||||||++|||||+.
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~ 160 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQA-----LQQVMAQT--DCLALAQRDYRVLSGGEQQRVQLARVLAQLW 160 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHH-----HHHHHHHT--TCSTTTTSBGGGCCHHHHHHHHHHHHHHHTC
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHH-----HHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 999999987 456999999987532221111111 12233333 45555566678999999999999999999
Q ss_pred ----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 ----DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ----~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++|++++
T Consensus 161 ~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 161 QPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp CSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred ccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999998753 4699999999999875 99999999999975
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.2e-49 Score=384.05 Aligned_cols=208 Identities=28% Similarity=0.448 Sum_probs=177.9
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
+.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....+|+.
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 35999999999952 579999999999999999999999999999999999999999999999999876 45667889
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 339 IGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 339 i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
++||||++.+|++ |++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~ 162 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE-----MVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 162 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999887 99999987531 122222111 122333333 5666667778899999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
.+|+++||||||++||+.+++.+++.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~ 226 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE 226 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEE
Confidence 9999999999999999999999999998875 47899999999999877 99999999999874
No 28
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.4e-49 Score=399.08 Aligned_cols=208 Identities=31% Similarity=0.530 Sum_probs=175.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC--CCHHHhhc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE--FQLKWIRG 337 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~--~~~~~~r~ 337 (478)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.+ .+....++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999953 579999999999999999999999999999999999999999999999999832 12234467
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
.|+||+|++.+|+. |++||+.++... ...++..+. +.+.++.+ |++........+||||||||++|||||
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~-----v~~~l~~~--gL~~~~~r~~~~LSGGq~QRValArAL 153 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR-----IEAMLELT--GISELAGRYPHELSGGQQQRAALARAL 153 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHH-----HHHHHHHH--TCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHH-----HHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 89999999999986 999999997532 122222211 12233333 667777788899999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+.+|++||||||||+||+.++..+.+.+.+.. .+.|+|+|||+++.+.. ||||++|++|++++
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~ 219 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ 219 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE
Confidence 99999999999999999999999998776653 47899999999998766 99999999999975
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=7e-49 Score=383.28 Aligned_cols=208 Identities=31% Similarity=0.527 Sum_probs=176.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC----------
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE---------- 329 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~---------- 329 (478)
-++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 3899999999953 479999999999999999999999999999999999999999999999999862
Q ss_pred CCH---HHhhcceEEEecCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcccc-ccCCCCCCC
Q 048556 330 FQL---KWIRGKIGLVSQEPVLFTS-SIKDNINYGK---DGASIAEIMAAAELANAAKFIDSLPQGLDTM-VGEHGTQLS 401 (478)
Q Consensus 330 ~~~---~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~---~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LS 401 (478)
++. ..+|+.++||||++.+|+. |++||+.++. .....++.. ..+.+.++.+ |++.. ......+||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDAR-----ERALKYLAKV--GIDERAQGKYPVHLS 155 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHH-----HHHHHHHHHT--TCCHHHHTSCGGGSC
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhcCCcccCC
Confidence 333 3467889999999999987 9999998842 112222211 1123445555 66666 677788999
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 233 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998875 47899999999999875 99999999999975
No 30
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.9e-49 Score=401.28 Aligned_cols=206 Identities=27% Similarity=0.469 Sum_probs=179.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+.. ++.|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 5799999999999999999999999999999999999999999999999999887765 4679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+||+|++.+|+. |++||+.++.. ..+.++..+. +.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHH-----HHHHHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence 999999999987 99999998632 1233333221 23444444 67777788889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||||++|++|++++
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~ 214 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999998753 7899999999998766 99999999999975
No 31
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-48 Score=382.42 Aligned_cols=203 Identities=31% Similarity=0.536 Sum_probs=172.8
Q ss_pred EEEEeEEEECCCCCC--CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 261 IELKDIYFSYPSRPG--EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 261 i~~~~v~~~y~~~~~--~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
++++|++|+|+.... +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... .+|+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999998643 67889
Q ss_pred eEEEecCC--CCCcccHHHHHhcCCCC-C----CHHHHHHHHHHhcHHHHHHhCCCCcc--ccccCCCCCCChHHHHHHH
Q 048556 339 IGLVSQEP--VLFTSSIKDNINYGKDG-A----SIAEIMAAAELANAAKFIDSLPQGLD--TMVGEHGTQLSGGQKQRIA 409 (478)
Q Consensus 339 i~~v~Q~~--~lf~~ti~eNl~~~~~~-~----~~~~~~~a~~~~~~~~~i~~lp~g~~--t~~~~~g~~LSgGq~Qrl~ 409 (478)
++||||++ .++..|++||+.++... . ..+++.++++.. |++ ........+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFV-----------GLDFDSFKDRVPFFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHT-----------TCCHHHHTTCCGGGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHc-----------CcCCcccccCChhhCCHHHHHHHH
Confidence 99999996 45677999999987422 1 123344444444 444 4455566899999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||||+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~ 218 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVF 218 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEE
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999874 57899999999999876 99999999999874
No 32
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.9e-49 Score=386.83 Aligned_cols=207 Identities=24% Similarity=0.355 Sum_probs=177.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC--CCCHHHhhc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK--EFQLKWIRG 337 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~--~~~~~~~r~ 337 (478)
-++++|++|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999963 47999999999999999999999999999999999999999999999999987 777777889
Q ss_pred ceEEEecCCCC-Ccc--cHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHH
Q 048556 338 KIGLVSQEPVL-FTS--SIKDNINYGKDG-------ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQR 407 (478)
Q Consensus 338 ~i~~v~Q~~~l-f~~--ti~eNl~~~~~~-------~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qr 407 (478)
.++||||++.+ |.. |++||+.++... ...+. ...+.+.++.+ |++........+||||||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~--gl~~~~~~~~~~LSgGqkqR 169 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI------RNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQR 169 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHH------HHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHH------HHHHHHHHHHc--CChhHhcCChhhCCHHHHHH
Confidence 99999999864 544 999999986421 11111 11223445555 67777778889999999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeE--EEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTT--VIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~--i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++|||||+.+|++|||||||++||+.+++.+++.|+++.+ ++|+ |+|||+++.+.. ||+|++|++|++++
T Consensus 170 v~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~ 243 (279)
T 2ihy_A 170 VMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ 243 (279)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE
T ss_pred HHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999988753 7899 999999998755 99999999999875
No 33
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.2e-48 Score=386.36 Aligned_cols=199 Identities=26% Similarity=0.459 Sum_probs=166.8
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
+.++++|++|.| +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 39 ~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~ 100 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 100 (290)
T ss_dssp -----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------C
T ss_pred ceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------E
Confidence 469999999864 3699999999999999999999999999999999999999999999987 4
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 339 IGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 339 i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
++|+||++.+|++|++||+. +.. ....+..++++..++.+++..+|.++++.+++.+.+||||||||++|||||+++|
T Consensus 101 i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p 178 (290)
T 2bbs_A 101 ISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178 (290)
T ss_dssp EEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred EEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999998 542 2344455667777888899999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHH-HHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 419 RILLLDEATSALDAESERVVQEAL-DKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 419 ~ililDEpts~LD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+++||||||++||+.+++.+++.+ +++.+++|+|++||+++.++.||++++|++|++++
T Consensus 179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~ 238 (290)
T 2bbs_A 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238 (290)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEE
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEE
Confidence 999999999999999999999974 45455789999999999988899999999999874
No 34
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.6e-48 Score=392.64 Aligned_cols=205 Identities=31% Similarity=0.524 Sum_probs=177.1
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.+||.++...+.. ++.++
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 4 IRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 899999999953 4799999999999999999999999999999999999999999999999999877654 57899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDGAS--IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~~~--~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
||||++.+|+. |++||+.++..... .++.. ..+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~~--~L~~~~~r~~~~LSgGq~QRvalArAL~~~ 151 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVE-----KRVVEIARKL--LIDNLLDRKPTQLSGGQQQRVALARALVKQ 151 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTT-----HHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999999986 99999999753221 11111 1123444544 666677778899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~ 214 (359)
T 2yyz_A 152 PKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ 214 (359)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999988743 7899999999998755 99999999999975
No 35
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-48 Score=374.26 Aligned_cols=202 Identities=30% Similarity=0.463 Sum_probs=173.7
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|++ +|+|+||++++ |+++|+||||||||||+|+|+|+++|++|+|.++|.++...+ ..++.++
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999941 59999999999 999999999999999999999999999999999999987643 3467899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR 419 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ 419 (478)
||||++.+|+. |++||+.++.......+- ...+.+.++.+ |++........+||||||||++|||||+.+|+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVER-----DRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHH-----HHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchH-----HHHHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999987 999999997533221110 12234455555 67666777788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 420 ILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 420 ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
++||||||++||+.+++.+++.|+++.+ ++|+|++||+++.+.. ||++++|++|++++
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999988743 7899999999998755 99999999999875
No 36
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.6e-48 Score=373.30 Aligned_cols=198 Identities=23% Similarity=0.352 Sum_probs=174.7
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++|+ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|.++.+++..++|++++
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 789999985 4899999999999999999999999999999999999999 99999999998888888889999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKD-GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~-~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
|+||++.+|.+ |++||+.++.. ..+.+++.+++ +.+ |++......+.+||||||||++|||||+.+|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVA---------GAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHH---------HHT--TCGGGTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHH---------HHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999998876 99999998742 12233344333 333 5555666778899999999999999999999
Q ss_pred C-------EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556 419 R-------ILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVR-NADLIAVIHQGKLVE 477 (478)
Q Consensus 419 ~-------ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~ 477 (478)
+ ++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~ 213 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA 213 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9 999999999999999999999999875 5789999999999985 599999999999874
No 37
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.7e-48 Score=391.66 Aligned_cols=208 Identities=31% Similarity=0.528 Sum_probs=178.0
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
..|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. .++.
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 35999999999932 2469999999999999999999999999999999999999999999999999987654 3678
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 339 IGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 339 i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
++||||++.+|+. |++||+.++.. ..+.++.. ..+.+.++.+ |++........+||||||||++|||||+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~-----~~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD-----ARVRELLRFM--RLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999986 99999998631 12222221 1123444554 6766777788999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 226 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ 226 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999988753 7899999999998765 99999999999975
No 38
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=8.2e-49 Score=380.41 Aligned_cols=207 Identities=28% Similarity=0.462 Sum_probs=168.4
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc--CCCCccEEEECCeecCCCCHHHh-hc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGVNLKEFQLKWI-RG 337 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~-r~ 337 (478)
++++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+.... ++
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 789999999953 5799999999999999999999999999999999999 89999999999999988876655 45
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCC-----CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCC-CChHHHHHHH
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGKD-----GASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQ-LSGGQKQRIA 409 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~-----~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~-LSgGq~Qrl~ 409 (478)
.++|+||++.+|++ |++||+.++.. ....++..+ .+.+.++.+ |++ ........+ ||||||||++
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv~ 153 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWT-----KVKKALELL--DWDESYLSRYLNEGFSGGEKKRNE 153 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHH--TCCGGGGGSBTTCC----HHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHHHHHHH
Confidence 69999999999987 99999987421 011111111 122334433 553 344455566 9999999999
Q ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh--cCEEEEEeCCEEee
Q 048556 410 IARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN--ADLIAVIHQGKLVE 477 (478)
Q Consensus 410 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~vl~~G~i~~ 477 (478)
|||||+++|+++|||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++
T Consensus 154 iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~ 224 (250)
T 2d2e_A 154 ILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA 224 (250)
T ss_dssp HHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999885 47899999999999876 59999999999975
No 39
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=7.9e-48 Score=391.87 Aligned_cols=206 Identities=28% Similarity=0.449 Sum_probs=173.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+++...+.. ++.+
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 3899999999953 4799999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+||||++.+|+. |++||+.|+... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK-----RVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHH-----HHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999986 999999997532 22222221 223445555 67777778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 222 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ 222 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999988753 7899999999998755 99999999999975
No 40
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.8e-48 Score=392.86 Aligned_cols=205 Identities=36% Similarity=0.527 Sum_probs=177.1
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||.++.+.+.. ++.++
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 4 IKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp EEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 899999999953 4799999999999999999999999999999999999999999999999999877654 57899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
||||++.+|+. |++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 151 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDK-----KVREVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVKE 151 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999999986 99999998631 122222211 123445554 666667778899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 214 (362)
T 2it1_A 152 PEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ 214 (362)
T ss_dssp CSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999988753 7899999999998755 99999999999975
No 41
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=4.6e-48 Score=391.86 Aligned_cols=207 Identities=29% Similarity=0.441 Sum_probs=176.7
Q ss_pred EEEEeEEEECCCCCCCc--ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC---HHHh
Q 048556 261 IELKDIYFSYPSRPGEQ--IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ---LKWI 335 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~--~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~---~~~~ 335 (478)
++++|++++|++ .+ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.+.+ ....
T Consensus 4 l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 4 IIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp EEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 899999999953 46 999999999999999999999999999999999999999999999999986521 2234
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 336 RGKIGLVSQEPVLFTS-SIKDNINYGKDGA--SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 336 r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~--~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
++.++||||++.+|+. |++||+.++.... ..++..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~LSGGq~QRvalAr 153 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK-----RVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALAR 153 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHH
Confidence 7889999999999987 9999999975321 2222211 123445554 6766677778999999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
||+.+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 154 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~ 221 (353)
T 1oxx_K 154 ALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ 221 (353)
T ss_dssp HHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999988743 7899999999998765 99999999999975
No 42
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=9e-48 Score=388.47 Aligned_cols=200 Identities=31% Similarity=0.537 Sum_probs=173.4
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|+ +. +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+||+++.+.+. .++.++
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 68999999995 24 9999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 341 LVSQEPVLFTS-SIKDNINYGKD---GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 341 ~v~Q~~~lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
||||++.+|+. |++||+.++.. ....+++. +.++.+ |++........+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~---------~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVL---------DTARDL--KIEHLLDRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHH---------HHHHHT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHH---------HHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999987 99999998631 11113333 334444 56666667788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+|++||||||||+||+.+++.+.+.|+++. .+.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999998874 37899999999998755 99999999999875
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.1e-47 Score=391.38 Aligned_cols=205 Identities=29% Similarity=0.479 Sum_probs=175.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC------CCHHH
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE------FQLKW 334 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~------~~~~~ 334 (478)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+ .+..
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~- 79 (372)
T 1g29_1 4 VRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK- 79 (372)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG-
T ss_pred EEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh-
Confidence 899999999953 479999999999999999999999999999999999999999999999999866 4433
Q ss_pred hhcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 335 IRGKIGLVSQEPVLFTS-SIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 335 ~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
++.|+||||++.+|+. |++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++||
T Consensus 80 -~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalA 151 (372)
T 1g29_1 80 -DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ-----RVREVAELL--GLTELLNRKPRELSGGQRQRVALG 151 (372)
T ss_dssp -GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred -HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCCcccCCHHHHHHHHHH
Confidence 5789999999999986 99999998631 122222211 122333433 666667778899999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEee
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-~d~i~vl~~G~i~~ 477 (478)
|||+.+|++||||||||+||+.+++.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++
T Consensus 152 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 220 (372)
T 1g29_1 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ 220 (372)
T ss_dssp HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999988753 7899999999998765 99999999999975
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=5.2e-47 Score=371.05 Aligned_cols=208 Identities=25% Similarity=0.365 Sum_probs=174.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc--CCCCccEEEECCeecCCCCHHHh-h
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGVNLKEFQLKWI-R 336 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--~~~~~G~i~~~g~~~~~~~~~~~-r 336 (478)
-++++||+|+|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.++...+...+ +
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 4999999999952 5799999999999999999999999999999999999 57899999999999988776655 4
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCC---------CCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCC-CCChHH
Q 048556 337 GKIGLVSQEPVLFTS-SIKDNINYGK---------DGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGT-QLSGGQ 404 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~---------~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~-~LSgGq 404 (478)
+.++||||++.+|++ |++||+.++. +..+.++.. ..+.+.++.+ |+++ ....... +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ-----DLMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHH-----HHHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHH-----HHHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 569999999999987 9999997532 112222221 1234455555 6654 3344444 599999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh--cCEEEEEeCCEEee
Q 048556 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN--ADLIAVIHQGKLVE 477 (478)
Q Consensus 405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--~d~i~vl~~G~i~~ 477 (478)
|||++|||||+.+|++|||||||++||+.+++.+++.|+++. +++|+|++||+++.+.. ||++++|++|++++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999875 47899999999999875 89999999999975
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.3e-47 Score=371.11 Aligned_cols=198 Identities=19% Similarity=0.344 Sum_probs=170.9
Q ss_pred EEEEeEEEECCCC-CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 261 IELKDIYFSYPSR-PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~-~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
++++|++++|++. ..+++|+|+||+++ ||+++|+||||||||||+|+|+|++ |++|+|.++|.++.+. .. |+.+
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 6899999999631 01479999999999 9999999999999999999999999 9999999999998754 33 7789
Q ss_pred E-EEecCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHc
Q 048556 340 G-LVSQEPVLFTSSIKDNINYGKD--GASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 340 ~-~v~Q~~~lf~~ti~eNl~~~~~--~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+ |+||++.+ ..|++||+.++.+ ....+++. +.++.+ |++ ...+..+.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFL---------EMLKAL--KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHH---------HHHHHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHH---------HHHHHc--CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 8899999988532 22233333 344444 676 7778888999999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cC-EEEEEeCCEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-AD-LIAVIHQGKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d-~i~vl~~G~i~~ 477 (478)
.+|+++||||||++||+.+++.+.+.|+++.+ |+|++||+++.+.. || ++++|++|++++
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~ 206 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQG 206 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEE
Confidence 99999999999999999999999999998754 99999999998765 99 999999999875
No 46
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-47 Score=362.08 Aligned_cols=194 Identities=22% Similarity=0.411 Sum_probs=165.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|++++|+ + ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 3 6999999999999999999999999999999999999999999999999886 257889
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556 340 GLVSQEPVLFTS-SIKDNINYGKD----GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 340 ~~v~Q~~~lf~~-ti~eNl~~~~~----~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
+||||++.+|++ |++||+.++.. ....+++. +.++.+ |++.. +..+.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~---------~~l~~~--gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIM---------DALESV--EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHH---------HHHHHT--TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHH---------HHHHHc--CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999987 99999987521 11122333 334444 67666 778899999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQGKL 475 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G~i 475 (478)
+.+|+++||||||++||+.+++.+.+.|+++. +++|+|++||+++.+.. ||+++ +..|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999998875 46899999999999887 66664 556765
No 47
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.1e-46 Score=365.92 Aligned_cols=193 Identities=29% Similarity=0.414 Sum_probs=164.3
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. +++.++
T Consensus 5 l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 5 LSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred EEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 899999999962 24799999999999999999999999999999999999999999998 357899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 341 LVSQEPVLFT-SSIKDNINYGKDG-------ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 341 ~v~Q~~~lf~-~ti~eNl~~~~~~-------~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
||||++.+|. .|++||+.++... ...+. . ..+.+.++.+ |++........+||||||||++|||
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAr 141 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD-Y-----QVAMQALDYL--NLTHLAKREFTSLSGGQRQLILIAR 141 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHH-H-----HHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHH-H-----HHHHHHHHHc--CChHHhcCChhhCCHHHHHHHHHHH
Confidence 9999999884 5999999986421 11111 1 1123344444 6666667778899999999999999
Q ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEee
Q 048556 413 AILKDPRILLLDEATSALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVR-NADLIAVIHQGKLVE 477 (478)
Q Consensus 413 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~~d~i~vl~~G~i~~ 477 (478)
||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||++++|++|+ ++
T Consensus 142 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~ 208 (253)
T 2nq2_C 142 AIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK 208 (253)
T ss_dssp HHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence 99999999999999999999999999999988753 789999999999885 599999999999 54
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.2e-37 Score=328.84 Aligned_cols=188 Identities=21% Similarity=0.285 Sum_probs=158.4
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
..++++|+++.|.+ ..+++.||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +.
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~ 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QI 331 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CC
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------ee
Confidence 35899999999953 468888999999999999999999999999999999999999998754 46
Q ss_pred eEEEecCCCC-CcccHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH
Q 048556 339 IGLVSQEPVL-FTSSIKDNINYGKDGA---SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI 414 (478)
Q Consensus 339 i~~v~Q~~~l-f~~ti~eNl~~~~~~~---~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal 414 (478)
++|+||+... +..|+++|+.+..... ..+.. .+.++.+ |+.........+||||||||++|||||
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~~~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFF---------EEVTKRL--NLHRLLESNVNDLSGGELQKLYIAATL 400 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHH---------HHTTTTT--TGGGCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred eEeechhcccccCCCHHHHHHHhhhhccchhHHHH---------HHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 8999999865 4679999998743221 11111 2333333 666667778899999999999999999
Q ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCC
Q 048556 415 LKDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQG 473 (478)
Q Consensus 415 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G 473 (478)
+.+|++|||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||||++|++|
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999874 47899999999999876 9999999863
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.3e-37 Score=329.33 Aligned_cols=190 Identities=23% Similarity=0.351 Sum_probs=158.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|+++.|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +..+
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 5899999999952 4699999999999999999999999999999999999999999975 2469
Q ss_pred EEEecCCCC-CcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 340 GLVSQEPVL-FTSSIKDNINYG-KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 340 ~~v~Q~~~l-f~~ti~eNl~~~-~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
+|+||++.. +..|+.||+... .+...++ ..+.+.++.+ |+.........+||||||||++|||||+.+
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~--------~~~~~~l~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~~ 419 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSN--------FYKTELLKPL--GIIDLYDREVNELSGGELQRVAIAATLLRD 419 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCH--------HHHHHTTTTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTSC
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHH--------HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 999999876 456999998643 1100100 1123344444 666666778899999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeC--CEEe
Q 048556 418 PRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ--GKLV 476 (478)
Q Consensus 418 ~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~--G~i~ 476 (478)
|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |+++
T Consensus 420 p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999874 37899999999999876 999999986 5543
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.5e-37 Score=330.62 Aligned_cols=188 Identities=24% Similarity=0.362 Sum_probs=157.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
.++++|+++.|.+ ..|+++||++++||++||+||||||||||+++|+|+++|++|+|.+ +..+
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEE
Confidence 5899999999953 3689999999999999999999999999999999999999999975 2469
Q ss_pred EEEecCCCC-CcccHHHHHhcC-CCCC-CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 340 GLVSQEPVL-FTSSIKDNINYG-KDGA-SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 340 ~~v~Q~~~l-f~~ti~eNl~~~-~~~~-~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+|+||++.. +..|+.||+... .+.. ..+. +.+.++.+ |++........+||||||||++|||||+.
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~---------~~~~l~~~--~l~~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFY---------KTELLKPL--GIIDLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHH---------HHHTHHHH--TCTTTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHH---------HHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 456999998753 1100 0111 22334433 56556667788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeC--CEE
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ--GKL 475 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~--G~i 475 (478)
+|++|||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |++
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~ 552 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRH 552 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTE
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceE
Confidence 999999999999999999999999999874 47899999999999876 999999985 554
No 51
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=2.8e-37 Score=344.67 Aligned_cols=202 Identities=22% Similarity=0.395 Sum_probs=155.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcce
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKI 339 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i 339 (478)
-++++|++|+|++. .+++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|. ..+
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 48999999999742 257999999999999999999999999999999999999999999999862 146
Q ss_pred EEEecCCCC-----CcccHHHHHh--------------------------------------------------------
Q 048556 340 GLVSQEPVL-----FTSSIKDNIN-------------------------------------------------------- 358 (478)
Q Consensus 340 ~~v~Q~~~l-----f~~ti~eNl~-------------------------------------------------------- 358 (478)
+|++|++.. .+.|+++|+.
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 777776521 1234555443
Q ss_pred ----------cCCC---CCC--------HHHHHH-------------HH--------HHhcHHHHHHhCCCCcccc--cc
Q 048556 359 ----------YGKD---GAS--------IAEIMA-------------AA--------ELANAAKFIDSLPQGLDTM--VG 394 (478)
Q Consensus 359 ----------~~~~---~~~--------~~~~~~-------------a~--------~~~~~~~~i~~lp~g~~t~--~~ 394 (478)
++.+ ..+ .+++.+ +. ....+.+.++.+ |++.. ..
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~ 896 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSH 896 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHH
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcC
Confidence 2210 000 000000 00 011234455655 66543 35
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCC
Q 048556 395 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQG 473 (478)
Q Consensus 395 ~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G 473 (478)
....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. ||++++|++|
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 667899999999999999999999999999999999999999999999875 5699999999999865 9999999999
Q ss_pred EEee
Q 048556 474 KLVE 477 (478)
Q Consensus 474 ~i~~ 477 (478)
++++
T Consensus 975 ~Iv~ 978 (986)
T 2iw3_A 975 RMTP 978 (986)
T ss_dssp BCCC
T ss_pred EEEE
Confidence 9864
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=9e-37 Score=329.50 Aligned_cols=193 Identities=21% Similarity=0.344 Sum_probs=155.0
Q ss_pred EeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE---------EECCeecCCCCHH-
Q 048556 264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---------LIDGVNLKEFQLK- 333 (478)
Q Consensus 264 ~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i---------~~~g~~~~~~~~~- 333 (478)
+|++++|++. ..+|+|+| ++++||+++|+||||||||||+|+|+|+++|++|++ .++|.++..+...
T Consensus 95 ~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhh
Confidence 8999999632 25899999 999999999999999999999999999999999996 4566655432111
Q ss_pred -HhhcceEEEecCCC----CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556 334 -WIRGKIGLVSQEPV----LFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 334 -~~r~~i~~v~Q~~~----lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
..+..+++++|... ++.+|++||+..... .+++.+ .++.+ |++........+||||||||+
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~---~~~~~~---------~L~~l--gL~~~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE---VGKFEE---------VVKEL--ELENVLDRELHQLSGGELQRV 237 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC---SSCHHH---------HHHHT--TCTTGGGSBGGGCCHHHHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhhHH---HHHHHH---------HHHHc--CCCchhCCChhhCCHHHHHHH
Confidence 12345889998743 445699999975321 122333 33333 555556667789999999999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCC
Q 048556 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQG 473 (478)
Q Consensus 409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G 473 (478)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|+++
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999999875 47899999999998876 9999999865
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-36 Score=325.42 Aligned_cols=196 Identities=21% Similarity=0.350 Sum_probs=153.1
Q ss_pred EEE-EeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE---------EECCeecCCC
Q 048556 261 IEL-KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---------LIDGVNLKEF 330 (478)
Q Consensus 261 i~~-~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i---------~~~g~~~~~~ 330 (478)
.++ +|++|+|++. .++++|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 345 6999999632 25899999 999999999999999999999999999999999995 3566554332
Q ss_pred CHHH--hhcceEEEecCCCCC----cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556 331 QLKW--IRGKIGLVSQEPVLF----TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ 404 (478)
Q Consensus 331 ~~~~--~r~~i~~v~Q~~~lf----~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 404 (478)
.... .+..+++++|....+ .+|++||+..... .+++. +.++.+ |++........+|||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~---~~~~~---------~~l~~l--gl~~~~~~~~~~LSgGe 163 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE---TGKLE---------EVVKAL--ELENVLEREIQHLSGGE 163 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS---SSCHH---------HHHHHT--TCTTTTTSBGGGCCHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH---HHHHH---------HHHHHc--CCChhhhCChhhCCHHH
Confidence 1111 134588999975443 3589999864211 12222 333433 55555566678999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhh-cCEEEEEeCC
Q 048556 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRN-ADLIAVIHQG 473 (478)
Q Consensus 405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-~d~i~vl~~G 473 (478)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|
T Consensus 164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999998875 47899999999999876 9999999864
No 54
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=3.4e-40 Score=326.85 Aligned_cols=220 Identities=17% Similarity=0.230 Sum_probs=178.9
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccCCCCCCccCCCCccEEEEeEEEEC
Q 048556 191 LEKGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVKLDDIRGDIELKDIYFSY 270 (478)
Q Consensus 191 ~~g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y 270 (478)
..+..+-+.+.+++.+..+ ..++..+...+..++++..+.+|+.++++.+++..... . ......+.|+++||+|.|
T Consensus 36 a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~-~~~~~~~~i~~~~vs~~y 111 (305)
T 2v9p_A 36 ALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--G-SWKSILTFFNYQNIELIT 111 (305)
T ss_dssp HHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--C-CTHHHHHHHHHTTCCHHH
T ss_pred HHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--C-cccccCCeEEEEEEEEEc
Confidence 3455666777787766555 47899999999999999999999999998654322111 1 111112358999999999
Q ss_pred CCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCc
Q 048556 271 PSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT 350 (478)
Q Consensus 271 ~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~ 350 (478)
+ .++|+|+||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++++|.
T Consensus 112 ~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~ 166 (305)
T 2v9p_A 112 F----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWL 166 (305)
T ss_dssp H----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGG
T ss_pred C----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccc
Confidence 5 37999999999999999999999999999999999999 7998 357899999999
Q ss_pred ccHHH-HHhcCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 048556 351 SSIKD-NINYGKDGASIAEIMAAAELANAAKFIDS-LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428 (478)
Q Consensus 351 ~ti~e-Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~-lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts 428 (478)
+|+++ |+.++. +.++ +++++++. +|+|++ |.+|||||||| |||++++|+||| ||
T Consensus 167 ~ti~~~ni~~~~-~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts 222 (305)
T 2v9p_A 167 ASLADTRAALVD-DATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TS 222 (305)
T ss_dssp GGGTTCSCEEEE-EECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EE
T ss_pred ccHHHHhhccCc-cccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----EC
Confidence 99998 999863 3442 34567777 999998 78999999999 999999999999 99
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 429 ALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 429 ~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+||+.+++.+.. +|||++.++.||+| +|++|++++
T Consensus 223 ~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~ 257 (305)
T 2v9p_A 223 NIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPF 257 (305)
T ss_dssp SSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCC
T ss_pred CCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEE
Confidence 999999988852 29999999999999 999999976
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.5e-35 Score=325.32 Aligned_cols=193 Identities=25% Similarity=0.398 Sum_probs=129.7
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHH---------------------HHHhccCCCC-------ccEEEECCeec
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVI---------------------SLIERFYDPQ-------AGEVLIDGVNL 327 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~---------------------~ll~g~~~~~-------~G~i~~~g~~~ 327 (478)
.++|+|+||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4699999999999999999999999999998 8999999998 45566666554
Q ss_pred CCCCHHHhhcceEEEecCCCCC--------------------cccHHHHHhcCCCC-CC--HHHH-----HHHHHHhcHH
Q 048556 328 KEFQLKWIRGKIGLVSQEPVLF--------------------TSSIKDNINYGKDG-AS--IAEI-----MAAAELANAA 379 (478)
Q Consensus 328 ~~~~~~~~r~~i~~v~Q~~~lf--------------------~~ti~eNl~~~~~~-~~--~~~~-----~~a~~~~~~~ 379 (478)
... .++.+++|+|.+.++ ..|++||+.+.... .. +.+. .+..+..
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 332 245566666654332 34899999875311 11 1111 1111111
Q ss_pred HHHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEe
Q 048556 380 KFIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESERVVQEALDKIM-INRTTVIVA 455 (478)
Q Consensus 380 ~~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lARall~~~~--ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~it 455 (478)
+.++.+ |++.. ......+||||||||++|||||+.+|+ +|||||||++||+.+...+++.|+++. +++|+|+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 234444 55433 456678999999999999999999988 999999999999999999999998875 478999999
Q ss_pred cCchhhhhcCEEEEE------eCCEEee
Q 048556 456 HRLSTVRNADLIAVI------HQGKLVE 477 (478)
Q Consensus 456 H~~~~~~~~d~i~vl------~~G~i~~ 477 (478)
|+++.+..||+|++| ++|++++
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~ 289 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVA 289 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEE
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEE
Confidence 999998889999999 8898874
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=5.4e-34 Score=318.26 Aligned_cols=188 Identities=26% Similarity=0.335 Sum_probs=151.3
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
..+...|++++|++ +++|+|+||++++||+++|+||||||||||+|+|+| |+| +|.+... +..
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 35888899999963 479999999999999999999999999999999995 554 4544321 124
Q ss_pred eEEEecCC-CCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 339 IGLVSQEP-VLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 339 i~~v~Q~~-~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
++|++|++ .++.. |+.||+.+..... .+++.+.++..++. +........+||||||||++|||||+.
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~----------~~~~~~~~~~LSGGqkQRvaLArAL~~ 565 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFT----------DEMIAMPISALSGGWKMKLALARAVLR 565 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCC----------HHHHHSBGGGCCHHHHHHHHHHHHHHT
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCC----------hhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 78999985 45544 9999998621111 44455444444431 123344567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
+|++|||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 566 ~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv 624 (986)
T 2iw3_A 566 NADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLR 624 (986)
T ss_dssp TCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeee
Confidence 9999999999999999999999999988 58899999999999876 9999999999985
No 57
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-35 Score=313.14 Aligned_cols=188 Identities=24% Similarity=0.404 Sum_probs=153.1
Q ss_pred EeEEEECCCCCCCcccccceeeecCC-----CEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 264 KDIYFSYPSRPGEQIFNGFSLSIPSG-----TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 264 ~~v~~~y~~~~~~~~l~~is~~i~~G-----~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
++++|+|++ ...+++|+||++++| |+++|+||||||||||+++|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 678888964 246899999999998 8899999999999999999999999999962 11 346
Q ss_pred eEEEecCCC-CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 339 IGLVSQEPV-LFTSSIKDNINYGKDG--ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 339 i~~v~Q~~~-lf~~ti~eNl~~~~~~--~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
++|+||+.. .|+.|+++|+...... ...+...+ .++.+ |+.........+||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~---------~l~~l--~l~~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTD---------VVKPL--RIDDIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHH---------THHHH--TSTTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHH---------HHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999975 4678999998643211 12222222 23322 4555666778899999999999999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeC--CEEee
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ--GKLVE 477 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~--G~i~~ 477 (478)
.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |+++.
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~ 550 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAH 550 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEE
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEe
Confidence 9999999999999999999999999998874 47899999999999876 999999986 76653
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-34 Score=308.15 Aligned_cols=195 Identities=20% Similarity=0.355 Sum_probs=146.3
Q ss_pred eEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE-----------EECCeecCCCCHH
Q 048556 265 DIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-----------LIDGVNLKEFQLK 333 (478)
Q Consensus 265 ~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-----------~~~g~~~~~~~~~ 333 (478)
|++++|... ...|++++ ++++||++||+||||||||||+|+|+|+++|++|+| .+.|.++..+...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 468888642 35777777 699999999999999999999999999999999998 3344443332222
Q ss_pred HhhcceE--EEecCCCC----Cc---ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556 334 WIRGKIG--LVSQEPVL----FT---SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ 404 (478)
Q Consensus 334 ~~r~~i~--~v~Q~~~l----f~---~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 404 (478)
.+.+.+. +.+|.... +. .++.+++..... ...+++.++++. + |++........+|||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~~~~~~l~~---------~--gl~~~~~~~~~~LSgGe 226 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME-KSPEDVKRYIKI---------L--QLENVLKRDIEKLSGGE 226 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCC-SCHHHHHHHHHH---------H--TCTGGGGSCTTTCCHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhh-hHHHHHHHHHHH---------c--CCcchhCCChHHCCHHH
Confidence 3333332 33443221 11 156666654322 223344433333 3 56666677789999999
Q ss_pred HHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 048556 405 KQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRN-ADLIAVIHQGK 474 (478)
Q Consensus 405 ~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-~d~i~vl~~G~ 474 (478)
|||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|.
T Consensus 227 ~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 9999999999999999999999999999999999999998864 7899999999999877 99999998764
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-34 Score=308.96 Aligned_cols=191 Identities=20% Similarity=0.372 Sum_probs=147.4
Q ss_pred eEEEECCCCCCCcccccceeee-cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE-----------EECCeecCCCCH
Q 048556 265 DIYFSYPSRPGEQIFNGFSLSI-PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-----------LIDGVNLKEFQL 332 (478)
Q Consensus 265 ~v~~~y~~~~~~~~l~~is~~i-~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-----------~~~g~~~~~~~~ 332 (478)
+++.+|..+ .++-..+.+ ++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 567789632 344445554 5999999999999999999999999999999998 677776643322
Q ss_pred HHhh------cceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHH
Q 048556 333 KWIR------GKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQ 406 (478)
Q Consensus 333 ~~~r------~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Q 406 (478)
.... ..+.+++|.+.++.+|+++++...... ++..+++ +.+ |++........+|||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~---~~~~~~l---------~~l--~l~~~~~~~~~~LSgGe~Q 145 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDER---GKKDEVK---------ELL--NMTNLWNKDANILSGGGLQ 145 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCCS---SCHHHHH---------HHT--TCGGGTTSBGGGCCHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchhH---HHHHHHH---------HHc--CCchhhcCChhhCCHHHHH
Confidence 2111 224455555667778999887543221 1222233 333 4555556667899999999
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhh-cCEEEEEeCC
Q 048556 407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRN-ADLIAVIHQG 473 (478)
Q Consensus 407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~i~vl~~G 473 (478)
|++|||||+.+|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 999999999999999999999999999999999999998778999999999998876 9999999865
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.9e-34 Score=314.11 Aligned_cols=190 Identities=24% Similarity=0.390 Sum_probs=140.9
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHh----------------------ccCCCCccEEEECCeecCCCCHH
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE----------------------RFYDPQAGEVLIDGVNLKEFQLK 333 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~----------------------g~~~~~~G~i~~~g~~~~~~~~~ 333 (478)
.++|+|+||+|++||++||+||||||||||+++++ |+..+ +|.|.++|.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 46899999999999999999999999999998754 34443 57899999887654321
Q ss_pred Hhhc-----------------------------------------ceEEEecCCCCC-----------------------
Q 048556 334 WIRG-----------------------------------------KIGLVSQEPVLF----------------------- 349 (478)
Q Consensus 334 ~~r~-----------------------------------------~i~~v~Q~~~lf----------------------- 349 (478)
..+. ..++++|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1100 112233322211
Q ss_pred ----------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 350 ----------TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 350 ----------~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
..|++||+.+.... .+..++ .+.+..+ |+. ...+..+.+||||||||++|||||+.+|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~---~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI---PKIKRK------LETLYDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC---HHHHHH------HHHHHHT--TCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh---hhHHHH------HHHHHHc--CCchhhccCCchhCCHHHHHHHHHHHHHhhCC
Confidence 24888888876432 111111 2333443 443 3456778999999999999999999887
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEE------eCCEEee
Q 048556 419 ---RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVI------HQGKLVE 477 (478)
Q Consensus 419 ---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl------~~G~i~~ 477 (478)
++|||||||++||+.+.+.+++.|+++. +++|+|+|||+++.++.||+|++| ++|+|++
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~ 631 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVA 631 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEE
Confidence 5999999999999999999999999875 478999999999999889999999 8999985
No 61
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.98 E-value=1.6e-32 Score=284.48 Aligned_cols=199 Identities=18% Similarity=0.283 Sum_probs=151.6
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC--------------------------------------CCcc
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD--------------------------------------PQAG 318 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~--------------------------------------~~~G 318 (478)
..+++++|++++| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3789999999999 999999999999999999976653 4578
Q ss_pred EEEECCeecCCCCHHHhhcc-eEEEecCCCCCcccHHHHHhcCCCCCCH-------------------------------
Q 048556 319 EVLIDGVNLKEFQLKWIRGK-IGLVSQEPVLFTSSIKDNINYGKDGASI------------------------------- 366 (478)
Q Consensus 319 ~i~~~g~~~~~~~~~~~r~~-i~~v~Q~~~lf~~ti~eNl~~~~~~~~~------------------------------- 366 (478)
++++||.+++..+..++.+. +++++|+..++..+..++..+.+.....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999987777777766 8999999988766655554443221110
Q ss_pred -------------HHHHHHH------H-------HhcHHHHHHhC--CC----------------Cccc---cccCCCCC
Q 048556 367 -------------AEIMAAA------E-------LANAAKFIDSL--PQ----------------GLDT---MVGEHGTQ 399 (478)
Q Consensus 367 -------------~~~~~a~------~-------~~~~~~~i~~l--p~----------------g~~t---~~~~~g~~ 399 (478)
+++.+.. + ...+.+.+..+ |. |++. .+..++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 0000000 0 00111222322 11 2222 33444444
Q ss_pred --------CChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEE
Q 048556 400 --------LSGGQKQRIAIARAILKDP--RILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAV 469 (478)
Q Consensus 400 --------LSgGq~Qrl~lARall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~v 469 (478)
|||||+||++|||+|+.+| ++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+..||++++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 8999999999999999999 999999999999999999999999998778999999999999888999999
Q ss_pred E----eCCEEe
Q 048556 470 I----HQGKLV 476 (478)
Q Consensus 470 l----~~G~i~ 476 (478)
| ++|+++
T Consensus 368 l~k~~~~G~~~ 378 (415)
T 4aby_A 368 VEKQVEDGRTV 378 (415)
T ss_dssp EEEEEETTEEE
T ss_pred EEEeccCCceE
Confidence 9 999975
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=8.9e-32 Score=300.11 Aligned_cols=190 Identities=28% Similarity=0.465 Sum_probs=141.1
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHH---------HHHhccCCC------Ccc------EEEECCeecCCCCH---
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVI---------SLIERFYDP------QAG------EVLIDGVNLKEFQL--- 332 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~---------~ll~g~~~~------~~G------~i~~~g~~~~~~~~--- 332 (478)
+.|+|+||+|++|++++|+||||||||||+ +++.+...+ .+| .+.++..++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 579999999999999999999999999997 344433322 223 35566555432110
Q ss_pred -------HHhh-------------------------------cceEEEecCCCCCc------------------------
Q 048556 333 -------KWIR-------------------------------GKIGLVSQEPVLFT------------------------ 350 (478)
Q Consensus 333 -------~~~r-------------------------------~~i~~v~Q~~~lf~------------------------ 350 (478)
+.+| +..|+++++..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0111 23467777766543
Q ss_pred ---------ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHHcCCC--
Q 048556 351 ---------SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLD-TMVGEHGTQLSGGQKQRIAIARAILKDP-- 418 (478)
Q Consensus 351 ---------~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall~~~-- 418 (478)
.|+.|++.+.......++. .+.+..+ |+. ..+++.+.+||||||||++|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~---------~~~L~~v--GL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~ 826 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRT---------LQVLHDV--GLGYVKLGQPATTLSGGEAQRIKLASELRKRDTG 826 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHH---------HHHHHHT--TGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCS
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHH---------HHHHHHc--CCchhhccCCccCCCHHHHHHHHHHHHHhhCCCC
Confidence 3566666665432111122 2344444 454 3578999999999999999999999876
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEE------eCCEEee
Q 048556 419 -RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVI------HQGKLVE 477 (478)
Q Consensus 419 -~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl------~~G~i~~ 477 (478)
++|||||||++||+.+++.+++.|+++. +++|||+|||+++.++.||+|++| ++|+|++
T Consensus 827 p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~ 893 (916)
T 3pih_A 827 RTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVA 893 (916)
T ss_dssp SEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEE
Confidence 7999999999999999999999999875 578999999999999999999999 8999986
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=1.7e-31 Score=295.54 Aligned_cols=203 Identities=26% Similarity=0.399 Sum_probs=150.2
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHH-HhccCC-------C---------------
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISL-IERFYD-------P--------------- 315 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~l-l~g~~~-------~--------------- 315 (478)
..++++|+++ ..|+|+||+|++||++||+|+||||||||++. |+|+.. |
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 3589999976 26999999999999999999999999999996 766542 2
Q ss_pred ---Ccc-------EEEECCeecCCCCH----------HHhhcceEEEe---------cC---------------------
Q 048556 316 ---QAG-------EVLIDGVNLKEFQL----------KWIRGKIGLVS---------QE--------------------- 345 (478)
Q Consensus 316 ---~~G-------~i~~~g~~~~~~~~----------~~~r~~i~~v~---------Q~--------------------- 345 (478)
.+| .|.++|.++...+. +.+|+.++++| +.
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 356 68899988754332 33343332222 11
Q ss_pred -CCC------------------------Ccc-cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccc-cc
Q 048556 346 -PVL------------------------FTS-SIKDNINYGKDG-----ASIAEIMAAAELANAAKFIDSLPQGLDT-MV 393 (478)
Q Consensus 346 -~~l------------------------f~~-ti~eNl~~~~~~-----~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~ 393 (478)
-.+ +.+ ||.||+.+...+ ....+. ....+.++.+ |+.. .+
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~------~~~~~~L~~~--gL~~~~l 724 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAI------FRALDTLREV--GLGYLRL 724 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHH------HHHHHHHHHT--TCTTSBT
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHH------HHHHHHHHHc--CCCcccc
Confidence 111 122 566665432100 000111 1234566666 6665 46
Q ss_pred cCCCCCCChHHHHHHHHHHHHcCC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEE
Q 048556 394 GEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAV 469 (478)
Q Consensus 394 ~~~g~~LSgGq~Qrl~lARall~~---~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~v 469 (478)
++...+|||||+||++|||+|+++ |++|||||||++||+.+.+.+.+.|+++. +++|||+|||+++.++.||+|++
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~ 804 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLD 804 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE
Confidence 888999999999999999999996 69999999999999999999999998875 57899999999999988999999
Q ss_pred E------eCCEEee
Q 048556 470 I------HQGKLVE 477 (478)
Q Consensus 470 l------~~G~i~~ 477 (478)
| ++|++++
T Consensus 805 L~p~~g~~~G~Iv~ 818 (842)
T 2vf7_A 805 IGPGAGEDGGRLVA 818 (842)
T ss_dssp ECSSSGGGCCSEEE
T ss_pred ECCCCCCCCCEEEE
Confidence 9 6899874
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-34 Score=303.45 Aligned_cols=181 Identities=15% Similarity=0.168 Sum_probs=143.5
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc-E-EEECCeecCCCCHHHhhcc
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG-E-VLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~-i~~~g~~~~~~~~~~~r~~ 338 (478)
++++|++|+| .++||++++|++++|+||||||||||+|+|+|++.|++| + |++||. .++.
T Consensus 119 i~~~nl~~~y---------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~~ 180 (460)
T 2npi_A 119 KYIYNLHFML---------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQP 180 (460)
T ss_dssp HHHHHHHHHH---------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTSC
T ss_pred hhhhhhhehh---------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccCC
Confidence 5555666555 269999999999999999999999999999999999999 9 999981 3678
Q ss_pred eEEEecCCCCCc----ccHHHHHhcCCCC---C-CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 048556 339 IGLVSQEPVLFT----SSIKDNINYGKDG---A-SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI 410 (478)
Q Consensus 339 i~~v~Q~~~lf~----~ti~eNl~~~~~~---~-~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l 410 (478)
++|+||++.+|. .|++||+ ++... . ..+++. +.+..+ |++.... ..+||||||||++|
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~---------~ll~~~--gl~~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQ---------PMVKNF--GLERINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBC---------CEECCC--CSSSGGG--CHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHH---------HHHHHh--CCCcccc--hhhhhHHHHHHHHH
Confidence 999999986543 4899999 75421 0 111111 122222 5555543 78999999999999
Q ss_pred HHH--HcCCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch------hhhh-cCE-----EEEEe
Q 048556 411 ARA--ILKDPRI----LLLDE-ATSALDAESERVVQEALDKIMINRTTVIVAHRLS------TVRN-ADL-----IAVIH 471 (478)
Q Consensus 411 ARa--ll~~~~i----lilDE-pts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~------~~~~-~d~-----i~vl~ 471 (478)
||| |+.+|++ +|||| ||++||+. .+.+.+.+++. ++|+|+|+|+.+ .++. ||+ |++|+
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 999 9999999 99999 99999999 66777776664 679999999987 5444 999 99999
Q ss_pred -CCEEe
Q 048556 472 -QGKLV 476 (478)
Q Consensus 472 -~G~i~ 476 (478)
+|+++
T Consensus 324 k~G~iv 329 (460)
T 2npi_A 324 KLDGVS 329 (460)
T ss_dssp CCTTCC
T ss_pred CCCcEE
Confidence 99886
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=1.1e-30 Score=289.67 Aligned_cols=199 Identities=24% Similarity=0.387 Sum_probs=148.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHh-ccC-------CCCcc-------------
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE-RFY-------DPQAG------------- 318 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~-g~~-------~~~~G------------- 318 (478)
.++++|++. ..|+|+||+|++||++||+|+||||||||++.++ |.. .+..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 488888752 3699999999999999999999999999999864 221 11233
Q ss_pred EEEECCeecCCCC---H-------HHhh---------cceEEEecCCCC-------------------------------
Q 048556 319 EVLIDGVNLKEFQ---L-------KWIR---------GKIGLVSQEPVL------------------------------- 348 (478)
Q Consensus 319 ~i~~~g~~~~~~~---~-------~~~r---------~~i~~v~Q~~~l------------------------------- 348 (478)
.|.+||.++...+ + +.+| +.++|+||...+
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4788888874321 1 1111 335777775321
Q ss_pred ---------------C---------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChH
Q 048556 349 ---------------F---------TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGG 403 (478)
Q Consensus 349 ---------------f---------~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgG 403 (478)
| .-|+.||+.+.... .++.+ ..+.++.+ |+.. .+++...+||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~---~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI---PKIKR------KLETLYDV--GLGYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC---HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc---hhHHH------HHHHHHHc--CCCcccccCchhhCCHH
Confidence 0 11455555543311 11111 23456666 6766 678889999999
Q ss_pred HHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEE------eCC
Q 048556 404 QKQRIAIARAILKDP---RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVI------HQG 473 (478)
Q Consensus 404 q~Qrl~lARall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl------~~G 473 (478)
||||++|||||+++| ++|||||||++||+.+.+.+++.|+++. +++|+|+|||+++.++.||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999998875 578999999999999889999999 689
Q ss_pred EEee
Q 048556 474 KLVE 477 (478)
Q Consensus 474 ~i~~ 477 (478)
++++
T Consensus 930 ~Iv~ 933 (972)
T 2r6f_A 930 QIVA 933 (972)
T ss_dssp SEEE
T ss_pred EEEE
Confidence 9874
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=4.6e-30 Score=285.56 Aligned_cols=199 Identities=24% Similarity=0.372 Sum_probs=146.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHh-c----cCC---CCccE------------
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE-R----FYD---PQAGE------------ 319 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~-g----~~~---~~~G~------------ 319 (478)
.++++|++. ..|+|+||+|++|+++||+|+||||||||++.|+ | .+. +..|.
T Consensus 647 ~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 647 QLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp EEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred eEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 588999852 3699999999999999999999999999999864 2 221 23343
Q ss_pred -EEECCeecCCCC---H-------HHhh---------cceEEEecCCCC-------------------------------
Q 048556 320 -VLIDGVNLKEFQ---L-------KWIR---------GKIGLVSQEPVL------------------------------- 348 (478)
Q Consensus 320 -i~~~g~~~~~~~---~-------~~~r---------~~i~~v~Q~~~l------------------------------- 348 (478)
|.+++.++...+ + +.+| +..+|+||...+
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 455665553211 1 0111 345777775321
Q ss_pred ---------------Cc---------ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccCCCCCCChH
Q 048556 349 ---------------FT---------SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGEHGTQLSGG 403 (478)
Q Consensus 349 ---------------f~---------~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~~g~~LSgG 403 (478)
+. .|+.||+.+.... .++.+ ..+.++.+ |+.. .+++...+||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~---~~~~~------~~~~L~~l--gL~~~~l~~~~~~LSGG 867 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI---AGVHR------YLRTLVDV--GLGYVRLGQPAPTLSGG 867 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC---HHHHH------HHHHHHHT--TGGGSBTTCCGGGSCHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc---hHHHH------HHHHHHHc--CCCcccccCccccCCHH
Confidence 01 1344455443211 11111 23455666 7776 678899999999
Q ss_pred HHHHHHHHHHHcCCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEE------eCC
Q 048556 404 QKQRIAIARAILKDP---RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVI------HQG 473 (478)
Q Consensus 404 q~Qrl~lARall~~~---~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl------~~G 473 (478)
||||++|||||+++| ++|||||||++||+.+.+.+++.|+++. .++|+|+|||+++.++.||+|++| ++|
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G 947 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGG 947 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCS
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCC
Confidence 999999999999875 9999999999999999999999998875 578999999999999889999999 689
Q ss_pred EEee
Q 048556 474 KLVE 477 (478)
Q Consensus 474 ~i~~ 477 (478)
++++
T Consensus 948 ~Iv~ 951 (993)
T 2ygr_A 948 TVVA 951 (993)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=1e-29 Score=255.27 Aligned_cols=194 Identities=20% Similarity=0.267 Sum_probs=142.3
Q ss_pred cceeeecCCCEEEEEcCCCCChHHHHHHHhccC-----------------------------------------------
Q 048556 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFY----------------------------------------------- 313 (478)
Q Consensus 281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~----------------------------------------------- 313 (478)
++++++.+| +++|+||||||||||+++|..+.
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578899999 99999999999999999998442
Q ss_pred ---CCCccEEEECCeecCCCCHHHhhcceEEEecCCCCC-cccHHHHHhcCCCC---------------CCHHHHHHHHH
Q 048556 314 ---DPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLF-TSSIKDNINYGKDG---------------ASIAEIMAAAE 374 (478)
Q Consensus 314 ---~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eNl~~~~~~---------------~~~~~~~~a~~ 374 (478)
.+.+|++++||.++...+..++.+.+++.||+..++ .|++.+|+...... .+.+++.+...
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344578999999986656666777889999988766 78999998753211 01112222211
Q ss_pred Hh------------cH-HHHHHhCCCCcccccc------CCCCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCC
Q 048556 375 LA------------NA-AKFIDSLPQGLDTMVG------EHGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALD 431 (478)
Q Consensus 375 ~~------------~~-~~~i~~lp~g~~t~~~------~~g~~LSgGq~Qrl~lARall----~~~~ililDEpts~LD 431 (478)
.. .+ .+....++.|+++.++ .....||||||||++|||||+ ++|+++||||||++||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD 255 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD 255 (322)
T ss_dssp HHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred HHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence 10 00 0011235556665433 245799999999999999996 7899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEE--EEEeCCEE
Q 048556 432 AESERVVQEALDKIMINRTTVIVAHRLSTVRNADLI--AVIHQGKL 475 (478)
Q Consensus 432 ~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i--~vl~~G~i 475 (478)
+.+.+.+.+.|+++.+++|+|++||+++.++.||++ ++|++|+.
T Consensus 256 ~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 256 DYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 999999999999886678999999998888889987 88888864
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=6.6e-31 Score=247.42 Aligned_cols=158 Identities=17% Similarity=0.194 Sum_probs=102.8
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD 355 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 355 (478)
+++|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+++.++|+||++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 4689985 89999999999999999999999999 99999994 333321 2234578899999987 56
Q ss_pred HH-hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH
Q 048556 356 NI-NYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 434 (478)
Q Consensus 356 Nl-~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~ 434 (478)
|+ .++.+. .+.+........+.+.++. |+ |||||++|||||+.+|++|||||||++ +
T Consensus 78 nl~~~~~~~--~~~~~~~~~~~~~~~~l~~---gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~ 135 (208)
T 3b85_A 78 KIDPYLRPL--HDALRDMVEPEVIPKLMEA---GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----T 135 (208)
T ss_dssp --CTTTHHH--HHHHTTTSCTTHHHHHHHT---TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred HHHHHHHHH--HHHHHHhccHHHHHHHHHh---CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence 66 332110 0000000001112233322 22 999999999999999999999999999 8
Q ss_pred HHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCCE
Q 048556 435 ERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQGK 474 (478)
Q Consensus 435 ~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G~ 474 (478)
++.+.+.|+++.+++|+| +||+++.++. +...++|.
T Consensus 136 ~~~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 136 PAQMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp HHHHHHHHTTBCTTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 889999998874568888 9999986654 44556774
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=2.4e-27 Score=241.85 Aligned_cols=83 Identities=25% Similarity=0.371 Sum_probs=76.6
Q ss_pred CCCCCCChHHHHHHHHHHHHc------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEE
Q 048556 395 EHGTQLSGGQKQRIAIARAIL------KDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLI 467 (478)
Q Consensus 395 ~~g~~LSgGq~Qrl~lARall------~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i 467 (478)
....+|||||+||++|||||+ .+|++|||||||++||+.+.+.+++.|+++. .++|+|+|||+++..+.||++
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 456789999999999999999 7999999999999999999999999999875 478999999999998889999
Q ss_pred EEEeCCEEee
Q 048556 468 AVIHQGKLVE 477 (478)
Q Consensus 468 ~vl~~G~i~~ 477 (478)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999986
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.94 E-value=1.7e-27 Score=217.29 Aligned_cols=149 Identities=19% Similarity=0.237 Sum_probs=108.3
Q ss_pred cceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCC--CCcccHHHHHh
Q 048556 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPV--LFTSSIKDNIN 358 (478)
Q Consensus 281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~ti~eNl~ 358 (478)
|+||++++||+++|+||||||||||++++.+-. .. .+.+.++ ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~------~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT------EV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG------GE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC------eE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 689999999999999999999999999965321 11 1233344 56777753 23333333321
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHH----
Q 048556 359 YGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES---- 434 (478)
Q Consensus 359 ~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~---- 434 (478)
. .. ...+..|+...+... ...|||||||++||||+..+|++++|||||++||+.+
T Consensus 64 ~------------~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y------------IV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H------------HH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H------------HH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 00 011223666555543 4569999999999999999999999999999999994
Q ss_pred ------------HHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEE
Q 048556 435 ------------ERVVQEALDKIM-INRTTVIVAHRLSTVRNADLI 467 (478)
Q Consensus 435 ------------~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i 467 (478)
.+.+.+.++++. ++.|+|+|||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 477888876653 478999999999999887765
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.93 E-value=1.1e-27 Score=220.18 Aligned_cols=140 Identities=16% Similarity=0.212 Sum_probs=104.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHH
Q 048556 291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIM 370 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~ 370 (478)
+++|+||||||||||+++|+|++. |.++|.+..+......++.++|++|++ +..+|+ ++.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~-------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSK-------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEET--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhh--------
Confidence 689999999999999999999985 556776654433224577899999987 222332 1100
Q ss_pred HHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH-----HcCCCCEEEEeC--CCCCCCHHHHHHHHHHHH
Q 048556 371 AAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA-----ILKDPRILLLDE--ATSALDAESERVVQEALD 443 (478)
Q Consensus 371 ~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa-----ll~~~~ililDE--pts~LD~~~~~~i~~~l~ 443 (478)
..+ -+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.++
T Consensus 63 -------------~~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 63 -------------FFT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp -------------TCC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred -------------cCC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 000 0135677788999999999999996 999999999999 999999999999999887
Q ss_pred HhcCCCeEEEEec---Cchhhhh-cCE
Q 048556 444 KIMINRTTVIVAH---RLSTVRN-ADL 466 (478)
Q Consensus 444 ~~~~~~t~i~itH---~~~~~~~-~d~ 466 (478)
+ .+.|+|+++| +...+.. ||+
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc
Confidence 6 4567888885 7777766 776
No 72
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.93 E-value=1.3e-29 Score=240.39 Aligned_cols=151 Identities=16% Similarity=0.155 Sum_probs=105.6
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH-HHhhcceEEEecCCCCCcc----
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL-KWIRGKIGLVSQEPVLFTS---- 351 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v~Q~~~lf~~---- 351 (478)
..|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++...+. ...++.++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99999 887654332 2346789999999876643
Q ss_pred -------cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHH-----HHHHcCCCC
Q 048556 352 -------SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAI-----ARAILKDPR 419 (478)
Q Consensus 352 -------ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~l-----ARall~~~~ 419 (478)
++.+| .++.+ .+++.++++. +....++ .+|||||+||+++ ||+++.+|+
T Consensus 87 ~~~l~~~~~~~~-~~g~~---~~~i~~~l~~------------~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGTL---KSEYDKAKEQ------------NKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEEE---HHHHHHHHHT------------TCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCCc---HHHHHHHHhC------------CCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 23333 22222 2333333321 1222332 6799999999999 899999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 048556 420 ILLLDEATSALDAESERVVQEALDKIMINRT 450 (478)
Q Consensus 420 ililDEpts~LD~~~~~~i~~~l~~~~~~~t 450 (478)
+++|||||+++|.+++..+.+.+.+..+++|
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~ 178 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH 178 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999877654433
No 73
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.93 E-value=4.7e-28 Score=243.61 Aligned_cols=140 Identities=18% Similarity=0.187 Sum_probs=116.2
Q ss_pred EEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEE
Q 048556 263 LKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342 (478)
Q Consensus 263 ~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 342 (478)
++|++| | .++++++|+++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+. +....+++.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEE
Confidence 556666 5 1489999999999999999999999999999999999999999999998753 2222345556665
Q ss_pred ecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEE
Q 048556 343 SQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILL 422 (478)
Q Consensus 343 ~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ili 422 (478)
++ |||+||++|||||..+|++++
T Consensus 223 ~g---------------------------------------------------------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 223 FG---------------------------------------------------------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp CB---------------------------------------------------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred eC---------------------------------------------------------CChhHHHHHHHHhhhCCCEEE
Confidence 40 899999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhcCC-CeEEEEecCchhhhhcCEEEEEeCCE
Q 048556 423 LDEATSALDAESERVVQEALDKIMIN-RTTVIVAHRLSTVRNADLIAVIHQGK 474 (478)
Q Consensus 423 lDEpts~LD~~~~~~i~~~l~~~~~~-~t~i~itH~~~~~~~~d~i~vl~~G~ 474 (478)
|||||+. ++.+.|+.+..+ .|+|+++|+++..+.|||+++|++|+
T Consensus 246 ldE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 246 LGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp ECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred EcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 9999982 345666666555 47999999999888899999998875
No 74
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.92 E-value=1.2e-27 Score=246.27 Aligned_cols=167 Identities=18% Similarity=0.178 Sum_probs=129.9
Q ss_pred CcccccceeeecCCC--------------------EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHh
Q 048556 276 EQIFNGFSLSIPSGT--------------------TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWI 335 (478)
Q Consensus 276 ~~~l~~is~~i~~G~--------------------~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~ 335 (478)
+.+|+|+||++++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 368999999999999 99999999999999999999999999999999998753
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH--HHHHHHHHHH
Q 048556 336 RGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG--QKQRIAIARA 413 (478)
Q Consensus 336 r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG--q~Qrl~lARa 413 (478)
| .++++|++....-|+.||+.++.+.. ++.+.++..++.+ ++..+ . |||| |+||++||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~~---~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGSTNF---PPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGSSC---CHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccchHH---HHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHH
Confidence 1 27899997544569999988765422 2333333333211 12222 2 9999 9999999999
Q ss_pred HcC----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----------CCCeEEEEecCchh--hhh-cCEE
Q 048556 414 ILK----------DPRILLLDEATSALDAESERVVQEALDKIM----------INRTTVIVAHRLST--VRN-ADLI 467 (478)
Q Consensus 414 ll~----------~~~ililDEpts~LD~~~~~~i~~~l~~~~----------~~~t~i~itH~~~~--~~~-~d~i 467 (478)
|.+ +|++++|||||++||+.+++++++.|++.. ...++++.||.++. ++. ||+|
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999 999999999999999999999999988762 12567789999876 555 6665
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.91 E-value=2.4e-26 Score=239.17 Aligned_cols=186 Identities=17% Similarity=0.163 Sum_probs=148.7
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCe---ecCCCC----
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV---NLKEFQ---- 331 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~---~~~~~~---- 331 (478)
..++++|+++.|+. +.++|+++ |+|++||+++|+||||||||||+++|+|+++|+.|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999962 35799999 999999999999999999999999999999999999999998 555432
Q ss_pred -HHHhhcceEEEecC-CCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556 332 -LKWIRGKIGLVSQE-PVLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 332 -~~~~r~~i~~v~Q~-~~lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
...+++.++|++|+ ..++. -|+.+|+.+.. +... .........+ +...+||+|| ||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~------------~~~~~v~~~l-d~l~~lS~g~-qrv 266 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFR------------DRGQHVLLIM-DSLTRYAMAQ-REI 266 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHH------------TTTCEEEEEE-ECHHHHHHHH-HHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHH------------hCCCCHHHHH-HhHHHHHHHH-HHH
Confidence 35578899999995 44444 48999987631 1110 0000011111 3367899999 999
Q ss_pred HHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-----CC-----eEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 409 AIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-----NR-----TTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 409 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-----~~-----t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+|| +.+|++ |++||+.+...+.+.+.++.+ ++ |++++||+++ ...||++++|.+|+++.
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 999 889998 999999999999999988754 43 9999999999 66799999999999975
No 76
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.90 E-value=8.1e-26 Score=224.43 Aligned_cols=176 Identities=17% Similarity=0.218 Sum_probs=128.8
Q ss_pred cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH----HHh--hcceEEEecCCC-CCcc
Q 048556 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL----KWI--RGKIGLVSQEPV-LFTS 351 (478)
Q Consensus 279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~--r~~i~~v~Q~~~-lf~~ 351 (478)
+.++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+..... ..+ |..++|++|++. +++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 356899999999999999999999999999999999999999999999866431 223 457999999998 7765
Q ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCC
Q 048556 352 -SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATS 428 (478)
Q Consensus 352 -ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~--ililDEpts 428 (478)
|++||+.++.....+. ..++.. |+.........+|| +||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d~------------~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDV------------VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCSE------------EEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCcc------------hHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 9999997642110000 011111 33222222334588 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEec---------Cchhhhh-cCEEEEEeCCEEe
Q 048556 429 ALDAESERVVQEALDKIMINRTTVIVAH---------RLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 429 ~LD~~~~~~i~~~l~~~~~~~t~i~itH---------~~~~~~~-~d~i~vl~~G~i~ 476 (478)
++|+.+.. +.+.+ ..+.|+|++|| .++.... .+.|..+..|+.+
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99998653 22222 23689999999 3444433 6899999999654
No 77
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.89 E-value=1.8e-26 Score=230.14 Aligned_cols=167 Identities=17% Similarity=0.233 Sum_probs=123.8
Q ss_pred CccEEEEeEEEECCCCCCCcccccceee-----------------------ecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 258 RGDIELKDIYFSYPSRPGEQIFNGFSLS-----------------------IPSGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 258 ~~~i~~~~v~~~y~~~~~~~~l~~is~~-----------------------i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
.+.|+++||++.|. |+++++++. +++|+++||+||||||||||+++|+|+++
T Consensus 41 ~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 41 GEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45699999999993 577877765 89999999999999999999999999999
Q ss_pred CCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccccc
Q 048556 315 PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD-GASIAEIMAAAELANAAKFIDSLPQGLDTMV 393 (478)
Q Consensus 315 ~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~-~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~ 393 (478)
|.+|. +.+++|+|++++++.|++||+.+... ..... .....+.+.++.++.|...
T Consensus 116 ~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~-----~d~~~~~~~L~~l~~~~~~-- 171 (312)
T 3aez_A 116 RWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPES-----YNRRALMRFVTSVKSGSDY-- 171 (312)
T ss_dssp TSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGG-----BCHHHHHHHHHHHHTTCSC--
T ss_pred ccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChH-----HHHHHHHHHHHHhCCCccc--
Confidence 98663 56999999999998899999976321 11110 0011123344444334431
Q ss_pred cCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhh
Q 048556 394 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTV 461 (478)
Q Consensus 394 ~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 461 (478)
.....|||||+||+++|||++.+|+|+|||||++.+|+.. ..+.+.. ..+|+|+|+.+..
T Consensus 172 -~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~--D~~I~V~a~~~~~ 231 (312)
T 3aez_A 172 -ACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF--DFSLYVDARIEDI 231 (312)
T ss_dssp -EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC--SEEEEEEECHHHH
T ss_pred -CCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc--CcEEEEECCHHHH
Confidence 1235899999999999999999999999999999998622 1122222 2568888887653
No 78
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.89 E-value=2.2e-25 Score=217.98 Aligned_cols=146 Identities=17% Similarity=0.162 Sum_probs=95.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHHhcCCCCCC---H
Q 048556 291 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGAS---I 366 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~---~ 366 (478)
.++|+||||||||||+|+|+|+..|++|+|.++|.++.. ...++.++|++|++.++.. |+.||+.++..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999988743 2346789999999998876 99999999864322 2
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 048556 367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM 446 (478)
Q Consensus 367 ~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 446 (478)
+.+.+... .++...+ ..+|||||+||+++|||++. +++|||||++||+... .+++.+.
T Consensus 81 ~~i~~~~~----~~~~~~~-----------~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~--- 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFL-----------KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLS--- 138 (270)
T ss_dssp HHHHHHHH----HHHHHHH-----------HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHH---
T ss_pred HHHHHHHH----HHHHhhh-----------HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHH---
Confidence 23333222 2222221 24699999999999999875 9999999999999873 3344443
Q ss_pred CCCeEEEEecCchhh
Q 048556 447 INRTTVIVAHRLSTV 461 (478)
Q Consensus 447 ~~~t~i~itH~~~~~ 461 (478)
+..++|+|.|+.+.+
T Consensus 139 ~~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 139 KVVNIIPVIAKADTM 153 (270)
T ss_dssp TTSEEEEEETTGGGS
T ss_pred hcCcEEEEEeccccC
Confidence 348999999988765
No 79
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.88 E-value=1.5e-25 Score=210.38 Aligned_cols=169 Identities=17% Similarity=0.135 Sum_probs=110.4
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHH
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIK 354 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 354 (478)
.++++| .++++||+++|+||||||||||+++|+|+++. +.+++.....-.....++.++|++|++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 79999999999999999999999999999963 44544221111112235779999999988865 777
Q ss_pred HHHhcCC---C-----CCCHHHHHHH----------HHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcC
Q 048556 355 DNINYGK---D-----GASIAEIMAA----------AELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 355 eNl~~~~---~-----~~~~~~~~~a----------~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~ 416 (478)
+|+.... . ..+.+++.+. ++..++.+.....| ..|| ||+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEE
Confidence 7763210 0 0112222222 22334433333333 2344 8999
Q ss_pred CCCEEEEeCCCCCC----CHHHHHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeC
Q 048556 417 DPRILLLDEATSAL----DAESERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQ 472 (478)
Q Consensus 417 ~~~ililDEpts~L----D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~ 472 (478)
+|++++|||||+++ |+..++.+.+.++++. .+.|+|+|||+++.+.. ||+|++|..
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 99999999999998 7779999999998875 36899999999998876 999999853
No 80
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.88 E-value=1.1e-24 Score=220.58 Aligned_cols=175 Identities=18% Similarity=0.230 Sum_probs=129.5
Q ss_pred ccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC----HHHh--hcceEEEecCCC-CCcc-
Q 048556 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ----LKWI--RGKIGLVSQEPV-LFTS- 351 (478)
Q Consensus 280 ~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-lf~~- 351 (478)
.++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++|++|++. +++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3588999999999999999999999999999999999999999999986542 1222 467999999998 7765
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCC
Q 048556 352 SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSA 429 (478)
Q Consensus 352 ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~--ililDEpts~ 429 (478)
|++||+.++.....+. ..++.. |+.........+|| +||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d~------------~lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV------------VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSE------------EEEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHH------------HHHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 9999998642110000 011111 33222222234588 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEec---------Cchhhhh-cCEEEEEeCCEEe
Q 048556 430 LDAESERVVQEALDKIMINRTTVIVAH---------RLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 430 LD~~~~~~i~~~l~~~~~~~t~i~itH---------~~~~~~~-~d~i~vl~~G~i~ 476 (478)
+|+.+... .+.+ ..+.|+|++|| .++.... .+.|..+..|+.+
T Consensus 290 lD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 290 LNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp GGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 99986632 2222 23689999999 3444433 6899999998654
No 81
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.87 E-value=4.7e-22 Score=201.51 Aligned_cols=74 Identities=22% Similarity=0.302 Sum_probs=68.6
Q ss_pred CCChHHHHHHHHHHHHc---------CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEE
Q 048556 399 QLSGGQKQRIAIARAIL---------KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAV 469 (478)
Q Consensus 399 ~LSgGq~Qrl~lARall---------~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~v 469 (478)
.|||||+||++|||+|+ .+|+|||||||||+||+..++.+.+.+.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998864 79999999 444 8999999
Q ss_pred EeCCEEee
Q 048556 470 IHQGKLVE 477 (478)
Q Consensus 470 l~~G~i~~ 477 (478)
|++|++++
T Consensus 340 l~~G~i~~ 347 (359)
T 2o5v_A 340 AQAGRFTP 347 (359)
T ss_dssp EETTEEEE
T ss_pred EECCEEEe
Confidence 99999875
No 82
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.86 E-value=9.5e-22 Score=209.48 Aligned_cols=77 Identities=18% Similarity=0.296 Sum_probs=71.6
Q ss_pred CCCC-ChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556 397 GTQL-SGGQKQRIAIARAILKDP--RILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473 (478)
Q Consensus 397 g~~L-SgGq~Qrl~lARall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G 473 (478)
...| ||||+||++||||++.+| ++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+..||++++|++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 3456 999999999999999999 9999999999999999999999999887789999999999999889999999554
No 83
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.86 E-value=5.4e-23 Score=207.77 Aligned_cols=186 Identities=16% Similarity=0.212 Sum_probs=142.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC-------CCH
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE-------FQL 332 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~-------~~~ 332 (478)
-++.+|+++.|+. +..+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|.+..+ ...
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4788999999962 35799999 9999999999999999999999999999999999999998875321 122
Q ss_pred HHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHH
Q 048556 333 KWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 333 ~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lA 411 (478)
..+++.+.+++|.+. ...+++..+.....+.++... .|.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~----------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp HHHTTEEEEEECTTS----------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred hhhhceEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 334555677766431 112344444444455555433 233321 124567899999 999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--C-CC-----eEEEEecCchhhhhcCEEEEEeCCEEee
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIM--I-NR-----TTVIVAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~-~~-----t~i~itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
+.+|++ |+|+|+.....+.+.+++.. + +. |++++||+++ ...||+++++.+|+|+.
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl 246 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVL 246 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEB
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEE
Confidence 688887 99999999999999998875 2 55 8999999998 55699999999999975
No 84
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.85 E-value=1.6e-24 Score=197.36 Aligned_cols=134 Identities=19% Similarity=0.188 Sum_probs=97.8
Q ss_pred CEEEEEcCCCCChHHHHHHHhccCCCC---ccEEEECCeecCCCC---HHHhh-cceE----EEecCCCCCcccHHHHHh
Q 048556 290 TTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVNLKEFQ---LKWIR-GKIG----LVSQEPVLFTSSIKDNIN 358 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~---~~~~r-~~i~----~v~Q~~~lf~~ti~eNl~ 358 (478)
++++|+|+||||||||+++|+|+++|+ .|.|.+||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988776 67777 4788 899999887 111
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEE-------EEeCCCCC-
Q 048556 359 YGKDGASIAEIMAAAELANAAKFIDS-LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRIL-------LLDEATSA- 429 (478)
Q Consensus 359 ~~~~~~~~~~~~~a~~~~~~~~~i~~-lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~il-------ilDEpts~- 429 (478)
+ +++. .+++++++.. +| |+||.++|+ |||||+|||+||||++++|++. +=|.|...
T Consensus 77 -~-----~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~ 141 (171)
T 2f1r_A 77 -V-----SEEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGH 141 (171)
T ss_dssp -C-----CHHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSS
T ss_pred -C-----Chhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccCccceEEEEecCCcccC
Confidence 1 1221 6789999999 99 999999995 9999999999999999999873 22444212
Q ss_pred --CCHHHHHHHHHHHHH
Q 048556 430 --LDAESERVVQEALDK 444 (478)
Q Consensus 430 --LD~~~~~~i~~~l~~ 444 (478)
+|....+.+.+.|.+
T Consensus 142 ~~f~~~~~~~~a~~i~~ 158 (171)
T 2f1r_A 142 KWFRRDEVERIAEFILS 158 (171)
T ss_dssp CEECTTCHHHHHHHHHH
T ss_pred cccCcccHHHHHHHHHH
Confidence 334444566666543
No 85
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.85 E-value=1.6e-22 Score=196.77 Aligned_cols=131 Identities=18% Similarity=0.208 Sum_probs=101.8
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC-ccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD 355 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 355 (478)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence 4899999 9999999999999999999999999999998 999999998764321 2223333331
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 048556 356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 435 (478)
Q Consensus 356 Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~ 435 (478)
+-|++. ..| |++|||||..+|+++++|||| |+++.
T Consensus 79 ------------------------------~~gl~~------~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 79 ------------------------------EVGEDT------KSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp ------------------------------EBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred ------------------------------HhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 112221 222 899999999999999999999 98886
Q ss_pred HHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEe
Q 048556 436 RVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIH 471 (478)
Q Consensus 436 ~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~ 471 (478)
..+.+ ....+.++++++|+.+....+||+++|.
T Consensus 114 ~~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 114 ETALR---AAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHH---HHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 65444 3345789999999998777789887664
No 86
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.85 E-value=6.7e-24 Score=196.56 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=116.5
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHH
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAE 368 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~ 368 (478)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..+++ .++++++|++|+. .++ ++|+.......+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999999 899 999998886554 4688999999986 332 223221110000
Q ss_pred HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH-HHHH---HHcCCCCEEEEeC--CCCCCCHHHHHHHHHHH
Q 048556 369 IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI-AIAR---AILKDPRILLLDE--ATSALDAESERVVQEAL 442 (478)
Q Consensus 369 ~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl-~lAR---all~~~~ililDE--pts~LD~~~~~~i~~~l 442 (478)
+...+..+++.+..+|+|||+++ ++++ |+.++|+++|||| |+..+|+...+.+.+.+
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 01134478888999999999998 5566 6899999999999 89989998877777776
Q ss_pred HHhcCCCeEEE----EecCchhhhhcCEEEEEeCCEEee
Q 048556 443 DKIMINRTTVI----VAHRLSTVRNADLIAVIHQGKLVE 477 (478)
Q Consensus 443 ~~~~~~~t~i~----itH~~~~~~~~d~i~vl~~G~i~~ 477 (478)
.. .+++|+ |+|+.+ ...+|+|..+++|+|++
T Consensus 133 ~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~ 167 (189)
T 2i3b_A 133 ST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFN 167 (189)
T ss_dssp HC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEE
T ss_pred hC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEE
Confidence 53 345553 349875 34567777777777764
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.85 E-value=1.2e-21 Score=193.72 Aligned_cols=181 Identities=13% Similarity=0.098 Sum_probs=122.0
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc-EEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD 355 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 355 (478)
++|+++++.+++|++++|+||||||||||++.++|...|++| .|.+.+.+ .+..++++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 589999999999999999999999999999999999999878 77664433 3455566555555554322 2233
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH-HHHHHHHHHHcCCCCEEEEeCCCC---C--
Q 048556 356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ-KQRIAIARAILKDPRILLLDEATS---A-- 429 (478)
Q Consensus 356 Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq-~Qrl~lARall~~~~ililDEpts---~-- 429 (478)
|+..+. .+.++..++. .+.+...+ + .+.+....+|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~~--~~~~~~~~~~-----~~~l~~~~--l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREI--IENGKFDQWF-----DELFGNDT--F--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHH--HHHTHHHHHH-----HHHHSSSC--E--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCC--CCHHHHHHHH-----HHHhccCC--E--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 443321 1122222211 12222222 2 1333445789999 66666 999999999999999999 4
Q ss_pred -CCH-HHHHHHHHHHHHhcC--CCeEEEEecCc--h--------------------hhh-hcCEEEEEeCCEE
Q 048556 430 -LDA-ESERVVQEALDKIMI--NRTTVIVAHRL--S--------------------TVR-NADLIAVIHQGKL 475 (478)
Q Consensus 430 -LD~-~~~~~i~~~l~~~~~--~~t~i~itH~~--~--------------------~~~-~~d~i~vl~~G~i 475 (478)
+|. .....+.+.|+++.+ ++|+|++||.. + .+. .||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455 566778888887742 78999999995 4 454 4999999998864
No 88
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.85 E-value=1.1e-20 Score=190.67 Aligned_cols=79 Identities=28% Similarity=0.399 Sum_probs=70.2
Q ss_pred CCCCCChHHHH------HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEE
Q 048556 396 HGTQLSGGQKQ------RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIA 468 (478)
Q Consensus 396 ~g~~LSgGq~Q------rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~ 468 (478)
....||||||| |+++|||++.+|++|||||||++||+.....+.+.|+++. .++|+|+|||+.+....||+++
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 45789999999 6788899999999999999999999999999999998864 4679999999988777799999
Q ss_pred EEe--CCE
Q 048556 469 VIH--QGK 474 (478)
Q Consensus 469 vl~--~G~ 474 (478)
+|+ +|.
T Consensus 325 ~l~~~~g~ 332 (339)
T 3qkt_A 325 RISLENGS 332 (339)
T ss_dssp EEEEETTE
T ss_pred EEEecCCc
Confidence 984 564
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.84 E-value=3.4e-23 Score=221.03 Aligned_cols=167 Identities=15% Similarity=0.151 Sum_probs=119.6
Q ss_pred CCccccccee-eecCCCEEEEEcCCCCChHHHHHH--HhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc
Q 048556 275 GEQIFNGFSL-SIPSGTTAALVGQSGSGKSTVISL--IERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS 351 (478)
Q Consensus 275 ~~~~l~~is~-~i~~G~~~~ivG~sGsGKSTL~~l--l~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 351 (478)
+.++|+++|+ .+++|++++|+||||||||||++. +.|+++|++|.|+++|.+. ..+....++.++|++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 3579999999 999999999999999999999999 7899999999999999873 223344567899999986521
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCC--
Q 048556 352 SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA-- 429 (478)
Q Consensus 352 ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~-- 429 (478)
+|+.+...... ++.+++++..++.+..... ...|||| +|++++|||||+.
T Consensus 101 ---~~l~~~~~~~~-~~~~~~l~~~~l~~~~~~~-----------~~~LS~g-------------~~~~lilDe~t~~~~ 152 (525)
T 1tf7_A 101 ---GKLFILDASPD-PEGQEVVGGFDLSALIERI-----------NYAIQKY-------------RARRVSIDSVTSVFQ 152 (525)
T ss_dssp ---TSEEEEECCCC-SSCCSCCSSHHHHHHHHHH-----------HHHHHHH-------------TCSEEEEECSTTTST
T ss_pred ---CcEEEEecCcc-cchhhhhcccCHHHHHHHH-----------HHHHHHc-------------CCCEEEECCHHHHHH
Confidence 11211110000 0000111112222222111 2345555 5889999999984
Q ss_pred ---CCHHHHHHHHHHHHHhc-CCCeEEEEecCchhh---------hh-cCEEEEEeC
Q 048556 430 ---LDAESERVVQEALDKIM-INRTTVIVAHRLSTV---------RN-ADLIAVIHQ 472 (478)
Q Consensus 430 ---LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~---------~~-~d~i~vl~~ 472 (478)
+|+...+.+++.++.+. .++|+|++||+++.+ +. ||+|++|++
T Consensus 153 ~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 153 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 68999999999998875 478999999999874 55 999999998
No 90
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.83 E-value=4.8e-21 Score=217.13 Aligned_cols=165 Identities=17% Similarity=0.159 Sum_probs=121.1
Q ss_pred ccEEEEe-----EEEECCCCCCCcccccceeeecC-------CCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee
Q 048556 259 GDIELKD-----IYFSYPSRPGEQIFNGFSLSIPS-------GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN 326 (478)
Q Consensus 259 ~~i~~~~-----v~~~y~~~~~~~~l~~is~~i~~-------G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 326 (478)
..|+++| |++.|++ +.++++|++|++++ |++++|+||||||||||+|.+ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 3599999 9999953 25799999999987 999999999999999999999 99864
Q ss_pred cCCCCHHHhhcceE-EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHH
Q 048556 327 LKEFQLKWIRGKIG-LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQK 405 (478)
Q Consensus 327 ~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~ 405 (478)
..++| ||||++. .-|+.||+... .++.+.+. .+..++|++++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r---------------ig~~d~~~-----------~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR---------------LGASDRIM-----------SGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE---------------CC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH---------------cCCHHHHh-----------hchhhhHHHHH
Confidence 24566 9999873 44666666321 01111111 12246777776
Q ss_pred HHHHHHHHHcCCCCEEEEeCCCCCCCHHHH-HHHHHHHHHhc-C-CCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556 406 QRIAIARAILKDPRILLLDEATSALDAESE-RVVQEALDKIM-I-NRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 406 Qrl~lARall~~~~ililDEpts~LD~~~~-~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
+ +++|++++.+|+++||||||+|+|+... ..+++.++.+. + ++|+|++||+++.+.. +|++.++ +|++.
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 5 9999999999999999999999999874 55677777764 3 7899999999998876 8998886 47765
No 91
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.82 E-value=1.3e-23 Score=214.55 Aligned_cols=175 Identities=14% Similarity=0.176 Sum_probs=141.8
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCC-ccEEEECCeecCCCCHHHhhcceEEEec-----CCCCCc
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGVNLKEFQLKWIRGKIGLVSQ-----EPVLFT 350 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~lf~ 350 (478)
++|++++ +++|+.++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + .+++.+++|+| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3566655 8999999999999999999999999999997 899987776654 2 25778999999 888999
Q ss_pred ccHHHHHhcCCCCC-------CHHHHHHHHHHhcH-----------------HHHH------------HhCCCCcccccc
Q 048556 351 SSIKDNINYGKDGA-------SIAEIMAAAELANA-----------------AKFI------------DSLPQGLDTMVG 394 (478)
Q Consensus 351 ~ti~eNl~~~~~~~-------~~~~~~~a~~~~~~-----------------~~~i------------~~lp~g~~t~~~ 394 (478)
+++++|++. .|+. +.+.++.+++.+.. ...+ ..+|+++++.++
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999997 4554 66667666665432 1221 124678999999
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCCE--EEEeCCCCCCCHH----H-----HHHHHHHHHHhcCCCeEEEEecCchh
Q 048556 395 EHGTQLSGGQKQRIAIARAILKDPRI--LLLDEATSALDAE----S-----ERVVQEALDKIMINRTTVIVAHRLST 460 (478)
Q Consensus 395 ~~g~~LSgGq~Qrl~lARall~~~~i--lilDEpts~LD~~----~-----~~~i~~~l~~~~~~~t~i~itH~~~~ 460 (478)
+++..+|+| ||+++||+++.+|++ +|+||+|++||.. + +..+.+.+....+++|.+.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 999899999 899999999999999 9999999999965 2 33466667777789999999999874
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=1.6e-20 Score=200.44 Aligned_cols=153 Identities=16% Similarity=0.076 Sum_probs=119.1
Q ss_pred eeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCC
Q 048556 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD 362 (478)
Q Consensus 283 s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~ 362 (478)
+..+++|++++|+||||||||||++.++|...|. |+ +.+.+++|++. .++++|.....
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcC-
Confidence 4589999999999999999999999999999885 54 12455666652 35555543211
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH-----HHHH
Q 048556 363 GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-----SERV 437 (478)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~-----~~~~ 437 (478)
.+.++ +. . .|+..........|||||+||+++||++..+|+++|+| ||++||.. ..+.
T Consensus 333 -~~~~~------------~~-~--~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~ 395 (525)
T 1tf7_A 333 -MDFEE------------ME-R--QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQF 395 (525)
T ss_dssp -CCHHH------------HH-H--TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHH
T ss_pred -CCHHH------------HH-h--CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHH
Confidence 11111 11 1 14555556667889999999999999999999999999 99999999 8889
Q ss_pred HHHHHHHhc-CCCeEEEEecCc----------hhhhh-cCEEEEEeCCE
Q 048556 438 VQEALDKIM-INRTTVIVAHRL----------STVRN-ADLIAVIHQGK 474 (478)
Q Consensus 438 i~~~l~~~~-~~~t~i~itH~~----------~~~~~-~d~i~vl~~G~ 474 (478)
+.+.++.++ .+.|+|+++|+. ..+.. ||+|++|++|+
T Consensus 396 i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 396 VIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 988887765 478999999998 66665 89999999886
No 93
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.81 E-value=1.9e-19 Score=187.41 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=67.7
Q ss_pred CCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEEEecCchhhhhcCEEEEEe
Q 048556 399 QLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVIVAHRLSTVRNADLIAVIH 471 (478)
Q Consensus 399 ~LSgGq~Qrl~lARall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~~d~i~vl~ 471 (478)
.||||||||++||++|+ ++|+++||||||++||+.....+.+.|++... +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999988753 679999999988888899999985
No 94
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.80 E-value=9e-24 Score=197.17 Aligned_cols=158 Identities=18% Similarity=0.283 Sum_probs=120.6
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCC-------------CCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccH
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSI 353 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti 353 (478)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++..++.+++++.+ +|++++|.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999986 78898 589998888999898875 79999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH-HHcCCCCEEEEeCCCCCCCH
Q 048556 354 KDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR-AILKDPRILLLDEATSALDA 432 (478)
Q Consensus 354 ~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR-all~~~~ililDEpts~LD~ 432 (478)
.+|+ +|. +.++++++++..... ..+..|+|+++.... ++ .|| +++.+|++++|||+|+++|.
T Consensus 77 ~~n~-~g~---~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 77 SGNL-YGT---SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp TTEE-EEE---EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred cCcc-CCC---CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 9998 664 567777776542110 011234466554321 12 567 89999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeC
Q 048556 433 ESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQ 472 (478)
Q Consensus 433 ~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~ 472 (478)
++++.|.+.|.+..++ +.++| +. ..+|+|+|+++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999999776543 34567 33 77999988764
No 95
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.80 E-value=1.7e-21 Score=187.60 Aligned_cols=152 Identities=11% Similarity=0.100 Sum_probs=97.6
Q ss_pred CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCc-ccH
Q 048556 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT-SSI 353 (478)
Q Consensus 275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti 353 (478)
+.++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++ ++. -|.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCc-CccccCH
Confidence 357999999999999999999999999999999999976 555443 3578899999996 444 489
Q ss_pred HHHHhcCCCCC--C-HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCC
Q 048556 354 KDNINYGKDGA--S-IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 430 (478)
Q Consensus 354 ~eNl~~~~~~~--~-~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~L 430 (478)
.+|+.+..... + ++.. . ...+.+.++.+.++.+.. ...||+||+||+++ ++++.+|+++|+|||....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~-~---~~~~~~~L~~l~~~~~~~----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHPDAF-D---NDLMHRTLKNIVEGKTVE----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTSGGGB-C---HHHHHHHHHHHHTTCCEE----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCCcccc-c---HHHHHHHHHHHHCCCCee----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 99986532111 1 1110 0 001122222222233333 35799999999988 6889999999999998888
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 048556 431 DAESERVVQEALDKIMINRTTVIVAHRLS 459 (478)
Q Consensus 431 D~~~~~~i~~~l~~~~~~~t~i~itH~~~ 459 (478)
|.. +.+. .+.|++++||...
T Consensus 147 ~~~--------l~~~-~~~~i~v~th~~~ 166 (245)
T 2jeo_A 147 SQE--------IRDM-FHLRLFVDTDSDV 166 (245)
T ss_dssp SHH--------HHTT-CSEEEEEECCHHH
T ss_pred cHH--------HHHh-cCeEEEEECCHHH
Confidence 764 2222 3789999999743
No 96
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=2.8e-20 Score=207.69 Aligned_cols=156 Identities=28% Similarity=0.419 Sum_probs=112.1
Q ss_pred HHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHh
Q 048556 306 ISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA-SIAEIMAAAELANAAKFIDS 384 (478)
Q Consensus 306 ~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~-~~~~~~~a~~~~~~~~~i~~ 384 (478)
.....+.+.|+.|+|+++|+++.++....+.+.++++.+ +.+...+. ...++.+..+ ...+++..
T Consensus 385 ~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~------------~~l~~~~~~~~~~~~~~~~--~~~~~L~~ 450 (916)
T 3pih_A 385 SVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKN------------LNLTEREREIVGELLKEIE--KRLEFLVD 450 (916)
T ss_dssp TTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHS------------CCCCTTTTTTHHHHHHHHH--HHHHHHHT
T ss_pred hhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHh------------ccCcHHHHHHHHhhHHHHH--HHHHHHHH
Confidence 344556789999999999999865433222222332211 11111110 1112222111 12345555
Q ss_pred CCCCcccc-ccCCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchh
Q 048556 385 LPQGLDTM-VGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLST 460 (478)
Q Consensus 385 lp~g~~t~-~~~~g~~LSgGq~Qrl~lARall~~~~--ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~ 460 (478)
+ |++.. .+....+|||||+||++|||||..+|+ +|||||||++||+...+.+++.|+++. .++|+|+|||+++.
T Consensus 451 v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~ 528 (916)
T 3pih_A 451 V--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528 (916)
T ss_dssp T--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHH
T ss_pred c--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 5 67643 567788999999999999999999887 999999999999999999999999886 47899999999999
Q ss_pred hhhcCEEEEE------eCCEEee
Q 048556 461 VRNADLIAVI------HQGKLVE 477 (478)
Q Consensus 461 ~~~~d~i~vl------~~G~i~~ 477 (478)
+..||+|++| ++|+++.
T Consensus 529 ~~~aD~ii~lgpgag~~~G~iv~ 551 (916)
T 3pih_A 529 IRNADHIIDIGPGGGTNGGRVVF 551 (916)
T ss_dssp HHTCSEEEEEESSSGGGCSEEEE
T ss_pred HHhCCEEEEEcCCcccCCCEEEE
Confidence 9999999999 8899874
No 97
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.80 E-value=1.1e-23 Score=214.47 Aligned_cols=224 Identities=11% Similarity=0.006 Sum_probs=146.5
Q ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccCCCCCCc-cCCCCc
Q 048556 182 AIWFGGKMILE-KGYKGGDVINVIFCVMIGSMSLGQASPCISAFAAGQAAAYKLFEAIERKPLIDAYDSNGVK-LDDIRG 259 (478)
Q Consensus 182 ~l~~g~~lv~~-g~ls~G~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~-~~~~~~ 259 (478)
+.+.|++.+.. +.+|.|.+.+++.+......+ .+....+.+..+..+..|+.+++ +|...... .... .....+
T Consensus 51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~-~~~~ir~~~~~ 125 (361)
T 2gza_A 51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGT-ISVTIRKPSFT 125 (361)
T ss_dssp EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTC-CEEEEECCCCC
T ss_pred EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCC-eEEEEEecCCC
Confidence 34456666665 789999988877665544333 11111112222333455666655 22211100 0000 000112
Q ss_pred cE---------EEEeEEEE---CCCCCCCccc---------ccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc
Q 048556 260 DI---------ELKDIYFS---YPSRPGEQIF---------NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG 318 (478)
Q Consensus 260 ~i---------~~~~v~~~---y~~~~~~~~l---------~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 318 (478)
.+ +|+||+|+ |++. +.++| +++||++++|+.++|+||||||||||+++|+|+++|++|
T Consensus 126 ~itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g 204 (361)
T 2gza_A 126 RRTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQR 204 (361)
T ss_dssp CCCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSC
T ss_pred CCCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCce
Confidence 35 88999999 8531 23455 999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHhhcceEEEe-cCCCC---CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcccccc
Q 048556 319 EVLIDGVNLKEFQLKWIRGKIGLVS-QEPVL---FTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVG 394 (478)
Q Consensus 319 ~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~l---f~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~ 394 (478)
.|+++|. .++.....++.+++++ |++.+ +..|+++|+..+.....+..+..+++.+.+.++++.+|.|+++.++
T Consensus 205 ~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~ 282 (361)
T 2gza_A 205 LITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSIT 282 (361)
T ss_dssp EEEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEE
T ss_pred EEEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEE
Confidence 9999985 3444445678899999 88876 6779999999875433333222233334566788899999999898
Q ss_pred CCCCCCChHHHHHHHHHHH
Q 048556 395 EHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 395 ~~g~~LSgGq~Qrl~lARa 413 (478)
+-..+-..+..+|+.....
T Consensus 283 t~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 283 SCHAGSCELTFERLALMVL 301 (361)
T ss_dssp EEECSSHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHHHh
Confidence 8777778899999987764
No 98
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.79 E-value=1.5e-20 Score=177.98 Aligned_cols=153 Identities=19% Similarity=0.265 Sum_probs=104.3
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccCCC-------CccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHH
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDP-------QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNI 357 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl 357 (478)
-+++|++++|+||||||||||++.|+|.+.| ..|.+++++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997655 445788877652 11 2357778888888888999999
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCCCCCCCHH--
Q 048556 358 NYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEATSALDAE-- 433 (478)
Q Consensus 358 ~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal--l~~~~ililDEpts~LD~~-- 433 (478)
.+..+....++ ....+ .+.+.+. +++ ..+|+++++||||+.+|+.
T Consensus 95 ~~~~~~~~~~~-~~~~~--~~~~~~~----------------------------~~~~~~~~~~llilDe~~~~l~~~~~ 143 (231)
T 4a74_A 95 YVARAFNSNHQ-MLLVQ--QAEDKIK----------------------------ELLNTDRPVKLLIVDSLTSHFRSEYI 143 (231)
T ss_dssp EEEECCSHHHH-HHHHH--HHHHHHH----------------------------HHTTSSSCEEEEEEETSSHHHHHHSC
T ss_pred EEEecCChHHH-HHHHH--HHHHHHH----------------------------HhcccCCceeEEEECChHHHhccccC
Confidence 87654322211 11111 1111111 111 3589999999999999984
Q ss_pred -----HH-----HHHHHHHHHhc--CCCeEEEEecCch----hhhh-cCEEEEEeCCE
Q 048556 434 -----SE-----RVVQEALDKIM--INRTTVIVAHRLS----TVRN-ADLIAVIHQGK 474 (478)
Q Consensus 434 -----~~-----~~i~~~l~~~~--~~~t~i~itH~~~----~~~~-~d~i~vl~~G~ 474 (478)
.+ ..+++.|.++. .++|+|++||... .+.+ ||++++|++|+
T Consensus 144 ~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 144 GRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 22 25667776653 3789999999544 4666 89999998763
No 99
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.79 E-value=4e-22 Score=203.32 Aligned_cols=148 Identities=17% Similarity=0.269 Sum_probs=100.5
Q ss_pred ccccceeeecC--CCEEEEEcCCCCChHHHHHHHhccCCCCc----cEEEE----CCeecCCCCHHHhhcceEEEecCCC
Q 048556 278 IFNGFSLSIPS--GTTAALVGQSGSGKSTVISLIERFYDPQA----GEVLI----DGVNLKEFQLKWIRGKIGLVSQEPV 347 (478)
Q Consensus 278 ~l~~is~~i~~--G~~~~ivG~sGsGKSTL~~ll~g~~~~~~----G~i~~----~g~~~~~~~~~~~r~~i~~v~Q~~~ 347 (478)
..+.+++++++ |++++|+||||||||||+++|+|+++|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 99887 35555 4555555 55999999999
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCC--ccccc-c-------CCCCCCChHHHHHHHHHHHH---
Q 048556 348 LFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQG--LDTMV-G-------EHGTQLSGGQKQRIAIARAI--- 414 (478)
Q Consensus 348 lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g--~~t~~-~-------~~g~~LSgGq~Qrl~lARal--- 414 (478)
+|.+|++||+.++..+..+...............+..++.+ ++..+ + ++|.++|+||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999999876544344443333322323333333322 22211 2 45566777777777777777
Q ss_pred cC--CCCEEEEeCCC
Q 048556 415 LK--DPRILLLDEAT 427 (478)
Q Consensus 415 l~--~~~ililDEpt 427 (478)
++ +++++++||||
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 65 67777777775
No 100
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.79 E-value=2.9e-19 Score=158.64 Aligned_cols=87 Identities=25% Similarity=0.358 Sum_probs=75.4
Q ss_pred Cccccc-----cCCCCCCChHHHHHHHHH------HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEe
Q 048556 388 GLDTMV-----GEHGTQLSGGQKQRIAIA------RAILKDPRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVA 455 (478)
Q Consensus 388 g~~t~~-----~~~g~~LSgGq~Qrl~lA------Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~it 455 (478)
+++..+ .....+||||||||++|| ||++.+|++++|||||++||+.+.+.+.+.++++. +++|+|++|
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 555554 345689999999999876 99999999999999999999999999999999875 468999999
Q ss_pred cCchhhhhcCEEEEE--eCCE
Q 048556 456 HRLSTVRNADLIAVI--HQGK 474 (478)
Q Consensus 456 H~~~~~~~~d~i~vl--~~G~ 474 (478)
|++.....||++++| ++|.
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGS 141 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTE
T ss_pred ChHHHHHhCCEEEEEEcCCCe
Confidence 999766679999999 5674
No 101
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.79 E-value=1e-19 Score=200.59 Aligned_cols=147 Identities=20% Similarity=0.227 Sum_probs=113.4
Q ss_pred CccEEEEeEEEECCCC--CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-CCccEEEECCeecCCCCHHH
Q 048556 258 RGDIELKDIYFSYPSR--PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLIDGVNLKEFQLKW 334 (478)
Q Consensus 258 ~~~i~~~~v~~~y~~~--~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~g~~~~~~~~~~ 334 (478)
.+.+++++. ++|-- .+.++++|+||+ |++++|+||||||||||+|+++|+.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p--a----- 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P--A----- 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S--S-----
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e--h-----
Confidence 346888887 44420 135789999999 99999999999999999999999974 6778652 1 1
Q ss_pred hhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 335 IRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 335 ~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
.+..+++++| +|.. ++.||+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 1456888887 5654 66766533 258899999999999
Q ss_pred H--cCCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHhcCCCeEEEEecCchhhhhc
Q 048556 414 I--LKDPRILLLDEA---TSALDAESE-RVVQEALDKIMINRTTVIVAHRLSTVRNA 464 (478)
Q Consensus 414 l--l~~~~ililDEp---ts~LD~~~~-~~i~~~l~~~~~~~t~i~itH~~~~~~~~ 464 (478)
+ +.+|+++||||| |+++|..+. ..+.+.+.+ .++|+|++||+.+....+
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 9 999999999999 999999875 578888876 578999999998876544
No 102
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.79 E-value=3.4e-21 Score=184.68 Aligned_cols=178 Identities=15% Similarity=0.146 Sum_probs=108.9
Q ss_pred EEEEeEEEECCCCCCCccccccee--eecCCCEEEEEcCCCCChHHHHHHHh--ccCCCCccEEEECCeecCCCCHHHhh
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSL--SIPSGTTAALVGQSGSGKSTVISLIE--RFYDPQAGEVLIDGVNLKEFQLKWIR 336 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~--~i~~G~~~~ivG~sGsGKSTL~~ll~--g~~~~~~G~i~~~g~~~~~~~~~~~r 336 (478)
+++++++..|+ .|+++ + .|++|++++|+||||||||||++.++ |+.++.+|.+.+++.+... .....+
T Consensus 7 ~~~~~i~tg~~------~lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 78 (251)
T 2ehv_A 7 QPVRRVKSGIP------GFDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREM 78 (251)
T ss_dssp -CCCEECCSCT------TTGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHH
T ss_pred cccceeecCCH------hHHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHH
Confidence 44556665554 34343 2 79999999999999999999999999 7756777888887654321 122334
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 337 GKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+.+++++|+...+.. ++.++....... ...+. +. .....+-++.++...+..-.
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~-------------~~~~~~~~~~~~~~~~~l~~ 133 (251)
T 2ehv_A 79 ASFGWDFEKYEKEGKIAIVDGVSSVVGL-PSEEK-----------FV-------------LEDRFNVDNFLRYIYRVVKA 133 (251)
T ss_dssp HTTTCCHHHHHHTTSEEEEC--------------------------------------------CCHHHHHHHHHHHHHH
T ss_pred HHcCCChHHHhhcCCEEEEEcccccccc-ccccc-----------ee-------------ccCcccHHHHHHHHHHHHHh
Confidence 567888776533321 333332211000 00000 00 00112234444444444445
Q ss_pred CCCCEEEEeCCCCCCC-----HHHHHHHHHHHHHhc-CCCeEEEEecCchhh----------hhc-CEEEEEe
Q 048556 416 KDPRILLLDEATSALD-----AESERVVQEALDKIM-INRTTVIVAHRLSTV----------RNA-DLIAVIH 471 (478)
Q Consensus 416 ~~~~ililDEpts~LD-----~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~----------~~~-d~i~vl~ 471 (478)
.+|++++|||||+++| +..++.+.+.++.+. .++|+|++||+++.. ..| |+|++|+
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 7999999999999997 566666888887764 479999999999886 347 9999995
No 103
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.79 E-value=1.1e-18 Score=195.52 Aligned_cols=159 Identities=15% Similarity=0.109 Sum_probs=112.9
Q ss_pred ccEEEEeEEEECCCC--CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHH--------hccCCCCccEEEECCeecC
Q 048556 259 GDIELKDIYFSYPSR--PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLI--------ERFYDPQAGEVLIDGVNLK 328 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~--~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll--------~g~~~~~~G~i~~~g~~~~ 328 (478)
..+++++...-+-.. .+..+++|++|++++|++++|+|||||||||++|++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 357887764433211 124789999999999999999999999999999999 66655544321
Q ss_pred CCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556 329 EFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 329 ~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
++.+ ..+|. .++. .+.+ ...+|+|++++.
T Consensus 702 ----------~~~~---d~i~~-------~ig~-----------------~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIV---DCILA-------RVGA-----------------GDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECC---SEEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHH---HHHHH-------hcCc-----------------hhhH--------------HHhHhhhHHHHH
Confidence 0100 01111 0110 0100 134788888888
Q ss_pred HHHHHH--cCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEEe
Q 048556 409 AIARAI--LKDPRILLLDEATSALDAESERVV-QEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKLV 476 (478)
Q Consensus 409 ~lARal--l~~~~ililDEpts~LD~~~~~~i-~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i~ 476 (478)
.+|+++ +.+|+++||||||+|+|+.....+ +..++.+. .++|+|++||+.+....||++..+++|++.
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVT 803 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEE
Confidence 888888 999999999999999999988777 45555554 378999999999888889999999999885
No 104
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.78 E-value=5.2e-20 Score=203.91 Aligned_cols=170 Identities=19% Similarity=0.282 Sum_probs=124.9
Q ss_pred CCCCChHHHHHHHhcc---------CCCCccEEEECCeecCC---CCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCC
Q 048556 297 QSGSGKSTVISLIERF---------YDPQAGEVLIDGVNLKE---FQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA 364 (478)
Q Consensus 297 ~sGsGKSTL~~ll~g~---------~~~~~G~i~~~g~~~~~---~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~ 364 (478)
.|..||+++.+.+... +.|..|+|.++|+++.+ ++..++...+.-+||++..+. | +...+..
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~--- 343 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRP--- 343 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCS---
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcch---
Confidence 3556899999988774 45678999999999887 555555555555555544221 1 1111111
Q ss_pred CHHHHH-----HHHHHhcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHH
Q 048556 365 SIAEIM-----AAAELANAAKFIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESER 436 (478)
Q Consensus 365 ~~~~~~-----~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lARall~~~--~ililDEpts~LD~~~~~ 436 (478)
...++. +..+. + +.+..+ |++.. ++....+|||||+||++||+||..+| .+|||||||++||+...+
T Consensus 344 ~~~~i~~~i~~ei~~r--l-~~L~~v--GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~ 418 (842)
T 2vf7_A 344 EQAIALQRMAADLVKR--L-DVLLHL--GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTE 418 (842)
T ss_dssp SHHHHHHHHHHHHHHH--H-HHHHHT--TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHH
T ss_pred hhHHHHHHHHHHHHHH--H-HHHHhC--CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHH
Confidence 111111 11111 1 244555 77654 67888999999999999999999999 599999999999999999
Q ss_pred HHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEE------eCCEEee
Q 048556 437 VVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVI------HQGKLVE 477 (478)
Q Consensus 437 ~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl------~~G~i~~ 477 (478)
.+++.|+++. .+.|+|+|+||++.++.||+|++| ++|+++.
T Consensus 419 ~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~ 466 (842)
T 2vf7_A 419 ALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILY 466 (842)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEE
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEE
Confidence 9999998886 478999999999999889999999 6888764
No 105
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.78 E-value=2.9e-22 Score=187.94 Aligned_cols=141 Identities=13% Similarity=0.170 Sum_probs=106.4
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc---cHHHHHhcCC
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS---SIKDNINYGK 361 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~---ti~eNl~~~~ 361 (478)
..++|+++||+||||||||||+++|+|++.| .++|++|++.+++. |+++|..+..
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 3578999999999999999999999999875 58999999988743 6777766532
Q ss_pred --CC-CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH----HHHHHHHHHHcCCCCEEEEeCCCCC-----
Q 048556 362 --DG-ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ----KQRIAIARAILKDPRILLLDEATSA----- 429 (478)
Q Consensus 362 --~~-~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq----~Qrl~lARall~~~~ililDEpts~----- 429 (478)
+. ...+++.++++..++. ..+...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~ 128 (211)
T 3asz_A 60 DHPDAFDLALYLEHAQALLRG-----------LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLK 128 (211)
T ss_dssp TSGGGBCHHHHHHHHHHHHTT-----------CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEE
T ss_pred CChhhhhHHHHHHHHHHHHcC-----------CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEE
Confidence 22 1234455444333221 12222356678885 5789999999999999999999999
Q ss_pred --CCHHHHHHHHHHHHHhc--CCCeEEEEecCc
Q 048556 430 --LDAESERVVQEALDKIM--INRTTVIVAHRL 458 (478)
Q Consensus 430 --LD~~~~~~i~~~l~~~~--~~~t~i~itH~~ 458 (478)
||+.++..+.+.+++.. .++|++.++|+.
T Consensus 129 i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 129 VFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999987752 478999999984
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.77 E-value=4.3e-20 Score=186.98 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=111.5
Q ss_pred cccccc-eeeecCCCEEEEEcCCCCChHHHHHHHhccC--CCCc----cE-EEECCeecCCCCHHHhhcceEEEecCCCC
Q 048556 277 QIFNGF-SLSIPSGTTAALVGQSGSGKSTVISLIERFY--DPQA----GE-VLIDGVNLKEFQLKWIRGKIGLVSQEPVL 348 (478)
Q Consensus 277 ~~l~~i-s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~--~~~~----G~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 348 (478)
+.|+++ ++.+++|++++|+||||||||||++.+++.+ +|++ |+ |++++.+.. .++++++++|+..+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 456665 6899999999999999999999999999998 6666 67 899987641 24568889999998
Q ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc-------CCCCEE
Q 048556 349 FTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL-------KDPRIL 421 (478)
Q Consensus 349 f~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall-------~~~~il 421 (478)
+..++.+|+.+.... + |++|+|++.++++++ .+|+++
T Consensus 192 ~~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 192 DPDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp CHHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred CHHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 888999999876432 1 234556666666665 789999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHhc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEe
Q 048556 422 LLDEATSALDAES------------ERVVQEALDKIM--INRTTVIVAHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 422 ilDEpts~LD~~~------------~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
|+||||+.+|+.. ...+++.|+++. .++|+|+++|....... ++.+.+...|+++
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l 305 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHIL 305 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCC
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceE
Confidence 9999999999863 245555665553 37899999998764432 2234445555543
No 107
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.76 E-value=1.7e-19 Score=182.74 Aligned_cols=147 Identities=22% Similarity=0.250 Sum_probs=107.6
Q ss_pred EeEEEECCCCCCCccccccee-------eecCCCEEEEEcCCCCChHHHHHHHhccCCCC-ccEEEECCeecCCCCHHHh
Q 048556 264 KDIYFSYPSRPGEQIFNGFSL-------SIPSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGVNLKEFQLKWI 335 (478)
Q Consensus 264 ~~v~~~y~~~~~~~~l~~is~-------~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~-~G~i~~~g~~~~~~~~~~~ 335 (478)
.+++++|... ..+.|+++.+ ..++|+.++|+||||||||||+++|+|+++|+ +|.|...+.++ ++. .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 5677777543 3567888887 78899999999999999999999999999987 56665443333 222 2
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 336 RGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 336 r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+...++++|...-.. ..+..+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~~~~~~----------------------------------------~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------TLGFSE----------------------------------------ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------BSCHHH----------------------------------------HHHHHTT
T ss_pred hccccceeeeeeccc------------cCCHHH----------------------------------------HHHHHhh
Confidence 334566666542111 011111 9999999
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVIHQG 473 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl~~G 473 (478)
.+|+++++|||| |.++.+.+.+. ...++|+++++|+.+.+..+||+++|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77775555544 23578999999999999889999887543
No 108
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=2.2e-20 Score=174.26 Aligned_cols=169 Identities=14% Similarity=0.191 Sum_probs=102.2
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC-----CCCccEEEE-------CCeecC
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY-----DPQAGEVLI-------DGVNLK 328 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-----~~~~G~i~~-------~g~~~~ 328 (478)
++++|++|.|+ .+++++ |++++|++++|+|+||||||||++.|+|.. .|+.|.+.+ ++..+.
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 257888 899999999999999999999999999998 888887754 222221
Q ss_pred CCC-----------HHHhhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-cccC
Q 048556 329 EFQ-----------LKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDT-MVGE 395 (478)
Q Consensus 329 ~~~-----------~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t-~~~~ 395 (478)
+.+ .+.+++.++++.|+...+++ ++..++..+ .+..+ .+ +.+++... +... .++.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~-~~------~~~~~~~~--~~~~~~v~n 145 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP---LKDLD-QQ------MIEWAVDS--NIAVLVLLT 145 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC---CCHHH-HH------HHHHHHHT--TCCEEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC---CchhH-HH------HHHHHHHc--CCCeEEEEe
Confidence 111 12233344444443322222 222222221 12211 01 12223221 3332 2466
Q ss_pred CCCCCChHHHHH-HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC
Q 048556 396 HGTQLSGGQKQR-IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI 447 (478)
Q Consensus 396 ~g~~LSgGq~Qr-l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~ 447 (478)
....+|+||+|| +..+|+++.+|+.+++|||||++|..+...+++.|.+..+
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 667899999999 8999999999999999999999999999999999987643
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.75 E-value=1.1e-20 Score=204.74 Aligned_cols=181 Identities=19% Similarity=0.277 Sum_probs=112.9
Q ss_pred cEEEEeEEEECCCCCCCcccccc----------eeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-CccEEEECCeecC
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGF----------SLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGVNLK 328 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~i----------s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~ 328 (478)
.++++|+++.|++. .+++|+.+ +++++. +||+||||||||||+++|+|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47899999999632 13455444 366664 999999999999999999999988 7999999999863
Q ss_pred CC---CHHHhhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHH
Q 048556 329 EF---QLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQ 404 (478)
Q Consensus 329 ~~---~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq 404 (478)
.. ....+++.++|++|++.+++. |+++|+.++. +.+... +..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------------~~~~~~-----------~~~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------------NAIAGE-----------GMGIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------------HHHHCS-----------SSCCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------------HHhcCC-----------ccccc---
Confidence 21 134578899999999998875 9999986421 011111 11111
Q ss_pred HHHHHHHHHHcCCCCEEEEeCC------CCCCCHHHHHHHHHHHHHhc-C--CCeEEEEecCchhh--------hh----
Q 048556 405 KQRIAIARAILKDPRILLLDEA------TSALDAESERVVQEALDKIM-I--NRTTVIVAHRLSTV--------RN---- 463 (478)
Q Consensus 405 ~Qrl~lARall~~~~ililDEp------ts~LD~~~~~~i~~~l~~~~-~--~~t~i~itH~~~~~--------~~---- 463 (478)
++++.++.+....|+++++||| |++||+..++.+.+.++++. + ..++++++|+++.. +.
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 2334445555668999999999 99999999999999998853 2 35677899997632 22
Q ss_pred -cCEEEEEeCCEEe
Q 048556 464 -ADLIAVIHQGKLV 476 (478)
Q Consensus 464 -~d~i~vl~~G~i~ 476 (478)
...|.|+.++.++
T Consensus 214 g~rtI~VlTK~Dlv 227 (608)
T 3szr_A 214 GDRTIGILTKPDLV 227 (608)
T ss_dssp CCSEEEEEECGGGS
T ss_pred CCceEEEecchhhc
Confidence 3567888776543
No 110
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.75 E-value=1.3e-18 Score=193.28 Aligned_cols=142 Identities=24% Similarity=0.376 Sum_probs=106.1
Q ss_pred CCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCC-CCHHH-------HHHHHHHhcHHHHHHh
Q 048556 313 YDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDG-ASIAE-------IMAAAELANAAKFIDS 384 (478)
Q Consensus 313 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~-~~~~~-------~~~a~~~~~~~~~i~~ 384 (478)
+.|....+.++|+++.++ ...||.|++.|.... .+.++ +.+..+. + +++..
T Consensus 432 l~~~~l~v~~~g~~i~q~------------------~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~R--l-~~L~~ 490 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGEV------------------TAMSVTEALAFFDGLELTEKEAQIARLILREIRDR--L-GFLQN 490 (972)
T ss_dssp BCTTTTTEESSSCBHHHH------------------HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHH--H-HHHHH
T ss_pred cCHHHheeEECCCcHHHH------------------hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--H-HHhhh
Confidence 456667777777765432 344777777764311 12211 1111112 1 23444
Q ss_pred CCCCcccc-ccCCCCCCChHHHHHHHHHHHHcCCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchh
Q 048556 385 LPQGLDTM-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLST 460 (478)
Q Consensus 385 lp~g~~t~-~~~~g~~LSgGq~Qrl~lARall~~~--~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~ 460 (478)
+ |++.. ++....+|||||+||++||++|..+| ++|||||||++||+...+.+++.|+++. .+.|||+|+||+++
T Consensus 491 v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~ 568 (972)
T 2r6f_A 491 V--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 568 (972)
T ss_dssp H--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHH
T ss_pred C--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 4 77653 67778899999999999999999985 9999999999999999999999999886 47899999999999
Q ss_pred hhhcCEEEEE------eCCEEee
Q 048556 461 VRNADLIAVI------HQGKLVE 477 (478)
Q Consensus 461 ~~~~d~i~vl------~~G~i~~ 477 (478)
++.||+|++| ++|+++.
T Consensus 569 i~~ADrIi~LgpgaG~~gG~iv~ 591 (972)
T 2r6f_A 569 MLAADYLIDIGPGAGIHGGEVVA 591 (972)
T ss_dssp HHSCSEEEEECSSSGGGCCSEEE
T ss_pred HHhCCEEEEeCCCccCCCCEEEE
Confidence 9999999999 6888874
No 111
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.74 E-value=5.9e-19 Score=175.11 Aligned_cols=151 Identities=23% Similarity=0.210 Sum_probs=103.9
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH----HHh--hcceEEEecCCCCCcc-cHHHHHhc
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL----KWI--RGKIGLVSQEPVLFTS-SIKDNINY 359 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~--r~~i~~v~Q~~~lf~~-ti~eNl~~ 359 (478)
++|++++|+||||||||||++.|+|+++|++|+|.++|.|+..... ..+ |..++|++|++.+++. |+++|+.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 3699999999999999999999999999999999999999866431 222 4579999999988875 88999864
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCCCCHHHHHH
Q 048556 360 GKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESERV 437 (478)
Q Consensus 360 ~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~--ililDEpts~LD~~~~~~ 437 (478)
+. ..+.+..+-..+ |.. ......++..++||.+||||+..+|+ ++.|| |+++ +.
T Consensus 180 ~~-------------~~~~d~~llDt~-G~~---~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~------~~ 235 (304)
T 1rj9_A 180 MK-------------ARGYDLLFVDTA-GRL---HTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTG------QN 235 (304)
T ss_dssp HH-------------HHTCSEEEECCC-CCC---TTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC------TH
T ss_pred HH-------------hCCCCEEEecCC-CCC---CchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH------HH
Confidence 31 000000000011 110 01112346677999999999999999 44455 4444 34
Q ss_pred HHHHHHHhc--CCCeEEEEecCchhh
Q 048556 438 VQEALDKIM--INRTTVIVAHRLSTV 461 (478)
Q Consensus 438 i~~~l~~~~--~~~t~i~itH~~~~~ 461 (478)
+.+.++++. .+.|+|++||.....
T Consensus 236 ~~~~~~~~~~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 236 GLEQAKKFHEAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp HHHHHHHHHHHHCCSEEEEECTTSSC
T ss_pred HHHHHHHHHHHcCCcEEEEECCcccc
Confidence 444444432 268999999986543
No 112
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.74 E-value=5.3e-20 Score=182.68 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=80.5
Q ss_pred EeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc-CCCCccEEEECCeecCCCCHHHhhcceEEE
Q 048556 264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF-YDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342 (478)
Q Consensus 264 ~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 342 (478)
+|+++.|.+ +.++++++|+| +|+||||+|||||++.|.|. ..|++| +.++|.++.. . .. ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-EeeEEEE
Confidence 478888953 47999999998 99999999999999999998 888999 8888887643 1 11 3568999
Q ss_pred ecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEE
Q 048556 343 SQEPVLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRIL 421 (478)
Q Consensus 343 ~Q~~~lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~il 421 (478)
+|++..+. -|+.|+..++......++... +.+++... .+ ....++|||||||+++|||++ ++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~------l~~~l~~~---~~----~~~~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKT------IISYIDEQ---FE----RYLHDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTT------HHHHHHHH---HH----HHHHHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHH------HHHHHHHH---HH----HHHHHhCHHhhhhhhhhhhhh----ee
Confidence 99877654 488888877642111011000 11111110 11 123469999999999999985 99
Q ss_pred EEeCCCCC-CCHHHHHHHHHHHHHhcC--CCeEEEEecCch
Q 048556 422 LLDEATSA-LDAESERVVQEALDKIMI--NRTTVIVAHRLS 459 (478)
Q Consensus 422 ilDEpts~-LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~ 459 (478)
++||||++ ||+... +.++++.+ +.++++.+|++.
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 99999985 999874 34444433 467888899974
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.73 E-value=1.8e-19 Score=185.92 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=100.3
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
+.|.++|+++.|++ .++++|+||+| +|+||||||||||++.|+|...|..| .+|.++...+ ...++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 35899999999963 47999999998 99999999999999999999886555 2333322111 112456
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCC
Q 048556 339 IGLVSQEPVLFT-SSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 417 (478)
Q Consensus 339 i~~v~Q~~~lf~-~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~ 417 (478)
+++++|++.++. -|+.||+.++... ..++.++. +.+++.. .++.+++||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 899999988874 5999999887642 22222221 1223321 2344567899999999999
Q ss_pred CC---EEEEeCCC-CCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhh
Q 048556 418 PR---ILLLDEAT-SALDAESERVVQEALDKIMINRTTVIVAHRLSTV 461 (478)
Q Consensus 418 ~~---ililDEpt-s~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 461 (478)
|+ ++++|||| .+||+... .+++ .+..+.++|+|.|+.+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~-~~lk---~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDI-EFMK---RLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHH-HHHH---HHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHH-HHHH---HHhccCcEEEEEEcccCc
Confidence 99 99999999 69998874 3333 344567888888887654
No 114
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.72 E-value=2.9e-18 Score=162.06 Aligned_cols=165 Identities=15% Similarity=0.058 Sum_probs=112.8
Q ss_pred Cccccccee-eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhc---ceEEEecCCCCCcc
Q 048556 276 EQIFNGFSL-SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRG---KIGLVSQEPVLFTS 351 (478)
Q Consensus 276 ~~~l~~is~-~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~---~i~~v~Q~~~lf~~ 351 (478)
.+.|+++.. .+++|+.++|+||||||||||++.+++...+.+|.+.+.+.+. +.+.+++ .+++.+|+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 81 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI---- 81 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh----
Confidence 467899988 8999999999999999999999999999888888888765443 2222222 2333333211
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCC--EEEEeCCCCC
Q 048556 352 SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSA 429 (478)
Q Consensus 352 ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~--ililDEpts~ 429 (478)
.+++..... ... ... + ..+ ....|.+|.++...+.+...+|+ ++++||||+.
T Consensus 82 --~~~~~~~~~-~~~--------------~~~--~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 82 --EKKLIIIDA-LMK--------------EKE--D----QWS---LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp --TTTEEEEEC-CC--------------------C----TTB---CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred --hCCEEEEec-ccc--------------ccC--c----eee---ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 001111100 000 000 0 001 12348999988888877778999 9999999988
Q ss_pred C--CHHHHHHHHHHHHHhc--CCCeEEEEecCc--------hhhhh-cCEEEEEeCC
Q 048556 430 L--DAESERVVQEALDKIM--INRTTVIVAHRL--------STVRN-ADLIAVIHQG 473 (478)
Q Consensus 430 L--D~~~~~~i~~~l~~~~--~~~t~i~itH~~--------~~~~~-~d~i~vl~~G 473 (478)
+ |+.....+++.|+++. .++|+|+++|.. ..+.. ||+|++|++.
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 8 9988889999998764 478999999998 44555 9999999754
No 115
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.72 E-value=7.8e-19 Score=196.32 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=96.6
Q ss_pred CCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCC-------C
Q 048556 275 GEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEP-------V 347 (478)
Q Consensus 275 ~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-------~ 347 (478)
+..+++|+||++++|++++|+||||||||||+|++++..-..+ .-+++|++. .
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq--------------------~g~~vpa~~~~i~~~d~ 718 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQ--------------------IGSYVPAEEATIGIVDG 718 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHH--------------------HTCCBSSSEEEEECCSE
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhh--------------------cCccccchhhhhhHHHH
Confidence 3579999999999999999999999999999999975421110 011222211 1
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCC
Q 048556 348 LFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 427 (478)
Q Consensus 348 lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpt 427 (478)
+|.. + ++.+ .+..+...+|+|++|+..++|+ +.+|+++||||||
T Consensus 719 i~~~-------i-----------------g~~d-----------~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~ 762 (918)
T 3thx_B 719 IFTR-------M-----------------GAAD-----------NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELG 762 (918)
T ss_dssp EEEE-------C--------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTT
T ss_pred HHHh-------C-----------------ChHH-----------HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCC
Confidence 1110 0 0111 1112235789999999999999 8899999999999
Q ss_pred CCCCHHHHHHHH-HHHHHhc--CCCeEEEEecCchhhhhcCE
Q 048556 428 SALDAESERVVQ-EALDKIM--INRTTVIVAHRLSTVRNADL 466 (478)
Q Consensus 428 s~LD~~~~~~i~-~~l~~~~--~~~t~i~itH~~~~~~~~d~ 466 (478)
+|+|+.....+. ..++.+. .++|+|++||+++..+.+|+
T Consensus 763 ~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 763 RGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 999999888887 5555552 47899999999988765554
No 116
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.72 E-value=4.6e-20 Score=182.00 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=96.2
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCC--
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA-- 364 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~-- 364 (478)
+++.+++|+||||||||||++.|.+++.+. |. . ++.+.+|+||+++|+.+.++|+.++.++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~--------------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG--------------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG--------------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC--------------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 457899999999999999999999999874 30 1 45566779999999999999998753210
Q ss_pred -CHHHHHHHHHHhcHHHHHHhCCCCcccc------ccCCCCCCChHHHHHHHHH--HHHcCCCCEEEEeCCCCCCCHHH
Q 048556 365 -SIAEIMAAAELANAAKFIDSLPQGLDTM------VGEHGTQLSGGQKQRIAIA--RAILKDPRILLLDEATSALDAES 434 (478)
Q Consensus 365 -~~~~~~~a~~~~~~~~~i~~lp~g~~t~------~~~~g~~LSgGq~Qrl~lA--Rall~~~~ililDEpts~LD~~~ 434 (478)
.......+.+...+.+++..+++|++|. +...+..+||||+||+++| |++ +|+|+|+||||+++|+..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011222345677899999998764 4567889999999999998 565 899999999999999853
No 117
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.71 E-value=2.6e-17 Score=149.84 Aligned_cols=78 Identities=24% Similarity=0.314 Sum_probs=70.9
Q ss_pred CCCCChHHHHHHHHHHHHc----CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEE--
Q 048556 397 GTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVI-- 470 (478)
Q Consensus 397 g~~LSgGq~Qrl~lARall----~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl-- 470 (478)
...||||||||++|||+++ ++|+++||||||++||+.+++.+.+.|++..++.++|+|||+...+..||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 4689999999999999996 5679999999999999999999999999988788999999999998899999855
Q ss_pred eCCE
Q 048556 471 HQGK 474 (478)
Q Consensus 471 ~~G~ 474 (478)
++|.
T Consensus 142 ~~g~ 145 (173)
T 3kta_B 142 RDGV 145 (173)
T ss_dssp ETTE
T ss_pred cCCE
Confidence 5674
No 118
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.71 E-value=2.3e-17 Score=183.87 Aligned_cols=125 Identities=28% Similarity=0.415 Sum_probs=97.5
Q ss_pred CCcccHHHHHhcCCCC-CCHHH--H-----HHHHHHhcHHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHHcCC-
Q 048556 348 LFTSSIKDNINYGKDG-ASIAE--I-----MAAAELANAAKFIDSLPQGLDTM-VGEHGTQLSGGQKQRIAIARAILKD- 417 (478)
Q Consensus 348 lf~~ti~eNl~~~~~~-~~~~~--~-----~~a~~~~~~~~~i~~lp~g~~t~-~~~~g~~LSgGq~Qrl~lARall~~- 417 (478)
++..||.|++.|.... .+.++ + .+..+. + +++..+ |++.. +.....+|||||+||++||+||..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~R--l-~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~ 540 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSR--L-GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGSGL 540 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHH--H-HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHH--H-HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhhCC
Confidence 4566999999985422 22211 1 111111 1 234444 77654 6778899999999999999999998
Q ss_pred -CCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEecCchhhhhcCEEEEE------eCCEEee
Q 048556 418 -PRILLLDEATSALDAESERVVQEALDKIM-INRTTVIVAHRLSTVRNADLIAVI------HQGKLVE 477 (478)
Q Consensus 418 -~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~vl------~~G~i~~ 477 (478)
|++|||||||++||+...+.+++.|+++. .++|+|+|+||+++++.||+|++| ++|+++.
T Consensus 541 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~ 608 (993)
T 2ygr_A 541 VGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVH 608 (993)
T ss_dssp CSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCE
T ss_pred CCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEE
Confidence 58999999999999999999999999886 578999999999999999999999 6788764
No 119
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.70 E-value=6.2e-18 Score=187.40 Aligned_cols=162 Identities=17% Similarity=0.194 Sum_probs=108.0
Q ss_pred cEEEEeEEEECCCC----CCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC-CccEEEECCeecCCCCHHH
Q 048556 260 DIELKDIYFSYPSR----PGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGVNLKEFQLKW 334 (478)
Q Consensus 260 ~i~~~~v~~~y~~~----~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~~~g~~~~~~~~~~ 334 (478)
.+++++. ++|-- ++..+++|+||+ ++|++++|+||||||||||+|+++|+..+ ..|. .+..
T Consensus 577 ~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa----- 642 (800)
T 1wb9_A 577 GIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA----- 642 (800)
T ss_dssp CEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----
T ss_pred CEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----
Confidence 4777764 23210 134689999999 99999999999999999999999997532 2231 1111
Q ss_pred hhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 335 IRGKIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 335 ~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
-+..+++++| +|.. ++.||+..+ ...+|+++++ ++.+..
T Consensus 643 ~~~~i~~~~~---i~~~~~~~d~l~~~------------------------------------~stf~~e~~~-~~~il~ 682 (800)
T 1wb9_A 643 QKVEIGPIDR---IFTRVGAADDLASG------------------------------------RSTFMVEMTE-TANILH 682 (800)
T ss_dssp SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHHH
T ss_pred hcccceeHHH---HHhhCCHHHHHHhh------------------------------------hhhhhHHHHH-HHHHHH
Confidence 1234666665 4543 555554321 1235666654 444455
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhc--CCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 048556 414 ILKDPRILLLDEATSALDAESERVV-QEALDKIM--INRTTVIVAHRLSTVRNADLIAVIHQGKL 475 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i-~~~l~~~~--~~~t~i~itH~~~~~~~~d~i~vl~~G~i 475 (478)
.+.+|+++||||||+|+|+.....+ ++.++.+. .++|+|++||+.+....||++..+++|++
T Consensus 683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHL 747 (800)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEE
T ss_pred hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEE
Confidence 6899999999999999998866665 55666654 37899999999988877888766777765
No 120
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=1.5e-17 Score=171.10 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=116.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCE--EEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhc
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTT--AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRG 337 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~--~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~ 337 (478)
.+++++ ++.|++ .+ |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++...+....++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 356666 788853 35 9999999999999 9999999999999999999994 3444444333333456
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHH---HhcHHHHHHhC-------CCCcccc-------ccCCCCC
Q 048556 338 KIGLVSQEPVLFTS-SIKDNINYGKDGASIAEIMAAAE---LANAAKFIDSL-------PQGLDTM-------VGEHGTQ 399 (478)
Q Consensus 338 ~i~~v~Q~~~lf~~-ti~eNl~~~~~~~~~~~~~~a~~---~~~~~~~i~~l-------p~g~~t~-------~~~~g~~ 399 (478)
.++|++|++.++.. |+.||+.++.. .+.+..++... ...+.+++... +..-|+. +-+.+..
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred eEEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 89999999998854 99999999864 23322222110 11222333322 1112222 2344556
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hc-CCCeEEEEecC
Q 048556 400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDK-IM-INRTTVIVAHR 457 (478)
Q Consensus 400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~-~~-~~~t~i~itH~ 457 (478)
|+-.+ +.++++|-.+++++++|+||..|.+.....+.+.+++ +. .+..++.++.+
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 77666 7999999999999999999999999988888888876 54 46778888754
No 121
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.66 E-value=1.4e-16 Score=155.98 Aligned_cols=151 Identities=19% Similarity=0.244 Sum_probs=101.1
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHh-cCCCC
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNIN-YGKDG 363 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~-~~~~~ 363 (478)
.+++|++++|+||||||||||++.+++... .|++ +.|.+... +..+.|++.+... ..+.+++. ++. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 478999999999999999999999999765 4666 34544321 3467888776532 22333322 222 1
Q ss_pred CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC--CCCHHHH---HHH
Q 048556 364 ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS--ALDAESE---RVV 438 (478)
Q Consensus 364 ~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts--~LD~~~~---~~i 438 (478)
...++... .++.+ ++....+.....||+||.|++ |+++++|+++|+||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~---------~~~~l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQA---------VADGL--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHH---------HHHHE--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhh---------ccCce--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 22222211 22222 344445667888999998765 78899999999999999 9997544 778
Q ss_pred HHHHHHhc--CCCeEEEEecCchhh
Q 048556 439 QEALDKIM--INRTTVIVAHRLSTV 461 (478)
Q Consensus 439 ~~~l~~~~--~~~t~i~itH~~~~~ 461 (478)
++.|+++. .++|+|+++|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 88887764 378999999988654
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.66 E-value=1.9e-16 Score=148.52 Aligned_cols=152 Identities=14% Similarity=0.130 Sum_probs=97.5
Q ss_pred Cccccccee-eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHH
Q 048556 276 EQIFNGFSL-SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIK 354 (478)
Q Consensus 276 ~~~l~~is~-~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 354 (478)
.+.|+++.. .+++|++++|+||||||||||++.+++ .+..+.++++..+ ..+.+ .++
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~------------------~~~ 63 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPE------------------RLV 63 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHH------------------HHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHH------------------HHH
Confidence 356777765 799999999999999999999999999 3333344443321 11111 222
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChH--HHHHHHHHHHHcCC-CCEEEEeCCCCCCC
Q 048556 355 DNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGG--QKQRIAIARAILKD-PRILLLDEATSALD 431 (478)
Q Consensus 355 eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgG--q~Qrl~lARall~~-~~ililDEpts~LD 431 (478)
+..... ....++ +.+.+ .+ ...|++ ++|+++.+|+++++ |+++++||||+.+|
T Consensus 64 ~~~~~~--~~~~~~------------~~~~~------~~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 64 QMAETR--GLNPEE------------ALSRF------IL----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HHHHTT--TCCHHH------------HHHHE------EE----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred HHHHhc--CCChHH------------HhhcE------EE----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 221110 011111 11111 01 123344 46789999999986 99999999999999
Q ss_pred HHHH--------HHHHHHHHHhcC--CCeEEEEecCch-------------hhh-hcCEEEEEeCC
Q 048556 432 AESE--------RVVQEALDKIMI--NRTTVIVAHRLS-------------TVR-NADLIAVIHQG 473 (478)
Q Consensus 432 ~~~~--------~~i~~~l~~~~~--~~t~i~itH~~~-------------~~~-~~d~i~vl~~G 473 (478)
+..+ ..+.+.|+++.+ ++|+|+++|... .++ .||++++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 7432 345555666543 789999999865 344 49999999754
No 123
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.66 E-value=1.8e-18 Score=159.17 Aligned_cols=160 Identities=15% Similarity=0.056 Sum_probs=101.0
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCC
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGA 364 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~ 364 (478)
.+++|++++|+||||||||||++.|+|. |+.|.|.++|.++..... .++.++|++|++. ...|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 5789999999999999999999999998 678999999987643221 1345678888664 3458888886421
Q ss_pred CHHHHHHHHHHhcHHHHHHhCC--CCccccc--cCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 048556 365 SIAEIMAAAELANAAKFIDSLP--QGLDTMV--GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440 (478)
Q Consensus 365 ~~~~~~~a~~~~~~~~~i~~lp--~g~~t~~--~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~ 440 (478)
... . ..+....++... .+++... +.....+|+|++||+++||++.++|+++ +|+...+.+.+
T Consensus 77 ---~~~--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GRY--A-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HHH--H-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HHH--h-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 000 0 000000000000 0111111 2344679999999999999999999876 58887777777
Q ss_pred HHHHhcCCCeEEEEecCchhhhhcCE
Q 048556 441 ALDKIMINRTTVIVAHRLSTVRNADL 466 (478)
Q Consensus 441 ~l~~~~~~~t~i~itH~~~~~~~~d~ 466 (478)
.+..+.....+++.|++.+.-+.+++
T Consensus 143 ~~~~l~~~~~~~i~t~~~~~~~~~~~ 168 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSGKDTDQALQS 168 (191)
T ss_dssp HTTCCGGGGGGEEECTTCCTTTTTTT
T ss_pred HHhccCcccccEEECCCCCHHHHHHH
Confidence 77654332244455554333233443
No 124
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.63 E-value=2.6e-17 Score=155.71 Aligned_cols=129 Identities=13% Similarity=0.088 Sum_probs=93.4
Q ss_pred eeeecCCCEEEEEcCCCCChHHHHHHHhccCCC--CccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cH----HH
Q 048556 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SI----KD 355 (478)
Q Consensus 283 s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti----~e 355 (478)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+++.+... ..++.++|++|++..|.. |+ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346799999999999999999999999999986 68999998876543 135679999999988865 44 45
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 048556 356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 435 (478)
Q Consensus 356 Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~ 435 (478)
|+.+..... |-.+++ ++.++..++++||| ||+.+.
T Consensus 86 ~~~~~~~~y-------------------------------------g~~~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 86 HAEVFGNYY-------------------------------------GTSREA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EEEETTEEE-------------------------------------EEEHHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHHHhccC-------------------------------------CCCHHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 554421100 000111 23344457999999 999999
Q ss_pred HHHHHHHHHhcCCCeEEEEecCchhhhh
Q 048556 436 RVVQEALDKIMINRTTVIVAHRLSTVRN 463 (478)
Q Consensus 436 ~~i~~~l~~~~~~~t~i~itH~~~~~~~ 463 (478)
+.+.+.+. ++.|++++||+++.++.
T Consensus 121 ~~i~~~l~---~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 121 QQIRQKMP---HARSIFILPPSKIELDR 145 (219)
T ss_dssp HHHHHHCT---TCEEEEEECSSHHHHHH
T ss_pred HHHHHHcc---CCEEEEEECCCHHHHHH
Confidence 99998875 47899999999988765
No 125
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.63 E-value=4.5e-19 Score=177.31 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=109.6
Q ss_pred CEEEEEcCCCCChHHHHHHHhccC--------CCCccEEEECCeecCCCC---------------HHHhhcceEEE---e
Q 048556 290 TTAALVGQSGSGKSTVISLIERFY--------DPQAGEVLIDGVNLKEFQ---------------LKWIRGKIGLV---S 343 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~--------~~~~G~i~~~g~~~~~~~---------------~~~~r~~i~~v---~ 343 (478)
++++|+|+||||||||+|.|+|.. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 789999999999987653 34567788888 7
Q ss_pred cCCCC-CcccHHHHHhcCCCCCCHHHHHHHH-HHhcHHHHHHhCCCCccccccC-----CCCCCChHHHHHHHHHHHHcC
Q 048556 344 QEPVL-FTSSIKDNINYGKDGASIAEIMAAA-ELANAAKFIDSLPQGLDTMVGE-----HGTQLSGGQKQRIAIARAILK 416 (478)
Q Consensus 344 Q~~~l-f~~ti~eNl~~~~~~~~~~~~~~a~-~~~~~~~~i~~lp~g~~t~~~~-----~g~~LSgGq~Qrl~lARall~ 416 (478)
|++.+ |+.++.||..++.|. .+.+.. ......+. ..+ ++.-+.++- .-.++|+||+||...+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~~~~~~~-~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPG----PIIQTFFSHEVLCQR-YLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHH----HHHHHHHHSHHHHHH-EEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHH----HHHHHHhcCccccCe-EEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 87764 567999999887642 221111 00000000 000 011122211 012689999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchh
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLST 460 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 460 (478)
+|+++ ||| +.+.+.++++.++.|++++||+...
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~ 191 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDID 191 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCC
Confidence 99877 888 6788888887778999999997543
No 126
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.61 E-value=1.2e-18 Score=163.33 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=105.2
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCC-CCC
Q 048556 286 IPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGK-DGA 364 (478)
Q Consensus 286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~-~~~ 364 (478)
.++|++++|+||||||||||+++|+|+++|+ | ..+++|+++.+.++.+..+|+.... ...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999976 4 2578888888878777777754211 111
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCC--ccccccCCCCCCChHHHHHHHHH-HHHcCCCCEEEEeCCC-----------CCC
Q 048556 365 SIAEIMAAAELANAAKFIDSLPQG--LDTMVGEHGTQLSGGQKQRIAIA-RAILKDPRILLLDEAT-----------SAL 430 (478)
Q Consensus 365 ~~~~~~~a~~~~~~~~~i~~lp~g--~~t~~~~~g~~LSgGq~Qrl~lA-Rall~~~~ililDEpt-----------s~L 430 (478)
. .+.+...+.+.+..++.| +++.+.+++..+|+||+||+++| |+++.++.++++|||. ..+
T Consensus 80 ~-----~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~v 154 (208)
T 3c8u_A 80 P-----ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRL 154 (208)
T ss_dssp G-----GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEE
T ss_pred C-----chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEE
Confidence 0 011112223344444444 77888999999999999999998 9999999999999985 346
Q ss_pred CHHHHHHHHHHHHHhc-CCCeEEEEecCc
Q 048556 431 DAESERVVQEALDKIM-INRTTVIVAHRL 458 (478)
Q Consensus 431 D~~~~~~i~~~l~~~~-~~~t~i~itH~~ 458 (478)
|...+..+...+++.. .+.|.--+.|+.
T Consensus 155 d~~~~~~~~R~~~R~~~~g~t~~~~~~~~ 183 (208)
T 3c8u_A 155 EVPMADLEARLVQRWLDHGLNHDAAVARA 183 (208)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 7777666666666542 244444444443
No 127
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.57 E-value=7e-18 Score=169.94 Aligned_cols=179 Identities=13% Similarity=0.158 Sum_probs=118.7
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH----HHhh
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL----KWIR 336 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~r 336 (478)
++++|+++.|.. ..+++++||++++|++++|+||||||||||++.|+|++.|++|+|.+.|.++..... ...+
T Consensus 30 ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 445566667742 468999999999999999999999999999999999999999999999998754321 2346
Q ss_pred cceEEEecCCCCCc----------cc---HHHHHhc---C-C-------CCC--CHHHHHHHHH-------------Hhc
Q 048556 337 GKIGLVSQEPVLFT----------SS---IKDNINY---G-K-------DGA--SIAEIMAAAE-------------LAN 377 (478)
Q Consensus 337 ~~i~~v~Q~~~lf~----------~t---i~eNl~~---~-~-------~~~--~~~~~~~a~~-------------~~~ 377 (478)
+++++++|++.+|. || .+|.+.. . . +.. ++..+.+.++ ...
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 78999999998885 22 2332210 0 0 000 0001100000 000
Q ss_pred HHHHHHhCCCCcc-ccccC-CCCCCChHHHHHHHHHHHHcC------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 048556 378 AAKFIDSLPQGLD-TMVGE-HGTQLSGGQKQRIAIARAILK------DPRILLLDEATSALDAESERVVQEALDKIM 446 (478)
Q Consensus 378 ~~~~i~~lp~g~~-t~~~~-~g~~LSgGq~Qrl~lARall~------~~~ililDEpts~LD~~~~~~i~~~l~~~~ 446 (478)
+.+.+...|.-+- +.... ....+|+|++|+++.|++++. +|+++. ||++|......+++.|.+..
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0001112222110 11221 124579999999999999998 688876 99999999999999987754
No 128
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.56 E-value=2.3e-15 Score=143.30 Aligned_cols=148 Identities=16% Similarity=0.222 Sum_probs=90.9
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhc--cCCC-----CccEEEECCeecCC-CCHHHhhcceEEEecCCCCCcccHHHH
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIER--FYDP-----QAGEVLIDGVNLKE-FQLKWIRGKIGLVSQEPVLFTSSIKDN 356 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g--~~~~-----~~G~i~~~g~~~~~-~~~~~~r~~i~~v~Q~~~lf~~ti~eN 356 (478)
-+++|++++|+||||||||||++.+++ ..+| ..|.+++++.+... .....+++.+++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 4554 57888888866311 1122334455555542 4566
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH---
Q 048556 357 INYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE--- 433 (478)
Q Consensus 357 l~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~--- 433 (478)
+.+..+ .+.++..+.++. +.+.+. -.+|+++++|||++.+|+.
T Consensus 93 ~~~~~~-~~~~~~~~~~~~--~~~~~~-------------------------------~~~~~lliiD~~~~~~~~~~~~ 138 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQLLYQ--ASAMMV-------------------------------ESRYALLIVDSATALYRTDYSG 138 (243)
T ss_dssp EEEEEC-CSHHHHHHHHHH--HHHHHH-------------------------------HSCEEEEEEETSSGGGC-----
T ss_pred eEEEec-CCHHHHHHHHHH--HHHHHh-------------------------------cCCceEEEEeCchHHHHHHhcC
Confidence 555432 222232221110 111111 1689999999999999985
Q ss_pred ----H-----HHHHHHHHHHhc--CCCeEEEEecCchhh-------------------h-hcCEEEEEeCC
Q 048556 434 ----S-----ERVVQEALDKIM--INRTTVIVAHRLSTV-------------------R-NADLIAVIHQG 473 (478)
Q Consensus 434 ----~-----~~~i~~~l~~~~--~~~t~i~itH~~~~~-------------------~-~~d~i~vl~~G 473 (478)
+ ...+++.|+++. .++|+|+++|..... . .||.+++|+.|
T Consensus 139 ~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 139 RGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 234555555543 378999999965432 2 48999999865
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.53 E-value=6.5e-15 Score=153.49 Aligned_cols=151 Identities=19% Similarity=0.285 Sum_probs=103.1
Q ss_pred cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC----HHH--hhcceEEEecCCCCCc-c
Q 048556 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ----LKW--IRGKIGLVSQEPVLFT-S 351 (478)
Q Consensus 279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~----~~~--~r~~i~~v~Q~~~lf~-~ 351 (478)
-+++||++++|++++|+|+||||||||++.|+|++.|++|+|.++|.|..... ... .|+.++|++|++.++. .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 35899999999999999999999999999999999999999999888765431 112 3678999999988765 4
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccC-CC-----CCCChHHHHHHHHHHHHcC-CC-CEEEE
Q 048556 352 SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGE-HG-----TQLSGGQKQRIAIARAILK-DP-RILLL 423 (478)
Q Consensus 352 ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~-~g-----~~LSgGq~Qrl~lARall~-~~-~ilil 423 (478)
|+++|+.++... |+|..+=+ -| .++-.--+|++.++|++.. .| .+++.
T Consensus 363 tV~e~l~~a~~~------------------------~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 363 VIFDAIQAAKAR------------------------NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHT------------------------TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHhc------------------------CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 999999765211 11111100 01 1111123478888998754 35 35555
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecC
Q 048556 424 DEATSALDAESERVVQEALDKIMINRTTVIVAHR 457 (478)
Q Consensus 424 DEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~ 457 (478)
.+||++.|.... .+.+.+ .-+.|.+++||-
T Consensus 419 LDattGq~al~~---ak~f~~-~~~itgvIlTKL 448 (503)
T 2yhs_A 419 IDASTGQNAVSQ---AKLFHE-AVGLTGITLTKL 448 (503)
T ss_dssp EEGGGTHHHHHH---HHHHHH-HTCCSEEEEECG
T ss_pred ecCcccHHHHHH---HHHHHh-hcCCCEEEEEcC
Confidence 558887655432 222222 136799999993
No 130
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.49 E-value=6.8e-15 Score=148.38 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=85.7
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC-CCccEEEEC-CeecCCCCHHHhhcceEEEecCCCCCcc-cH
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLID-GVNLKEFQLKWIRGKIGLVSQEPVLFTS-SI 353 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G~i~~~-g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 353 (478)
.-++++++.+ +|++++|+||||||||||+|+|+|... |..|+|.++ |.+.. ...++.++++||++.+++. |+
T Consensus 204 ~gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 3577888754 799999999999999999999999999 999999987 76542 2345679999999998876 89
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc
Q 048556 354 KDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL 415 (478)
Q Consensus 354 ~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall 415 (478)
+++.. ...+.+++.+ .+.++++.+ |+....+....++| ||+||++||++++
T Consensus 279 ~e~~l---~~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REFGL---WHLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTCCC---CCCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHhhh---cCCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 98632 2234444322 223344444 66666677788999 9999999999863
No 131
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.49 E-value=3.6e-16 Score=150.25 Aligned_cols=137 Identities=18% Similarity=0.219 Sum_probs=97.2
Q ss_pred CCCEEEEEcCCCCChHHHHHHHh---ccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHHhcC---
Q 048556 288 SGTTAALVGQSGSGKSTVISLIE---RFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYG--- 360 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~---g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~--- 360 (478)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+.. ..+...+.+++|++.+++. |+.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988776532 1234556677888777665 889988641
Q ss_pred ----------CCCCCHHHHHHHHHHhcHHHHHHhCC-CC------------ccccccCCCCCCChHHHHHHHHHHHH-cC
Q 048556 361 ----------KDGASIAEIMAAAELANAAKFIDSLP-QG------------LDTMVGEHGTQLSGGQKQRIAIARAI-LK 416 (478)
Q Consensus 361 ----------~~~~~~~~~~~a~~~~~~~~~i~~lp-~g------------~~t~~~~~g~~LSgGq~Qrl~lARal-l~ 416 (478)
.+ .+.++... +..+. -+ ++.........||| |+ ||+ +.
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~----------l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEA----------LDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHH----------HHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred cCCCeEEEECCC-CCHHHHHH----------HHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence 11 12211111 11110 11 12222344567898 55 788 99
Q ss_pred CCCEEEEe----CCCCCCCHHHHHHHHHHHHHhc
Q 048556 417 DPRILLLD----EATSALDAESERVVQEALDKIM 446 (478)
Q Consensus 417 ~~~ililD----Epts~LD~~~~~~i~~~l~~~~ 446 (478)
+|++++|| |||+++|..+++.+.+.++.+.
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 99999999 9999999999999998887654
No 132
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.49 E-value=9.7e-17 Score=169.83 Aligned_cols=174 Identities=16% Similarity=0.145 Sum_probs=119.8
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCc-ccHHH
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT-SSIKD 355 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~e 355 (478)
++++++++.+++|+.++|+||||||||||+++|+|+++|++|.|+++|.+--..+. .+.++++.|...... .|.++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 47889999999999999999999999999999999999999999998876322221 356778887765222 27777
Q ss_pred HHhcC---CC------CCCHHHHHHHHHHhc-------------HHHHHH---hCCCCcccccc-------CCCCCCChH
Q 048556 356 NINYG---KD------GASIAEIMAAAELAN-------------AAKFID---SLPQGLDTMVG-------EHGTQLSGG 403 (478)
Q Consensus 356 Nl~~~---~~------~~~~~~~~~a~~~~~-------------~~~~i~---~lp~g~~t~~~-------~~g~~LSgG 403 (478)
++... +| ..++.|...+.+... ..+.+. ..|.|+...+. .....+|||
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 76533 23 345555555444321 223332 22334433222 223467999
Q ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-CCeEEE--EecCchhhhh-cC
Q 048556 404 QKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMI-NRTTVI--VAHRLSTVRN-AD 465 (478)
Q Consensus 404 q~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~t~i~--itH~~~~~~~-~d 465 (478)
|+||.++|. + | |++||+.+.+.+++.+.++.+ ++|+++ +||+++.+.. |+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999987751 1 7 999999988777777766643 678875 8999998754 43
No 133
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=2.2e-14 Score=144.62 Aligned_cols=139 Identities=18% Similarity=0.228 Sum_probs=79.1
Q ss_pred CEEEEEcCCCCChHHHHHHHhc-cCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHH
Q 048556 290 TTAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAE 368 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g-~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~ 368 (478)
..+.|+||+|+||||+++.+++ ++.|+.|.+.++|.+...... .+..+++++|.+++.-..- + .+. ...+.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~---~~~--~~~~~ 108 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPS-D---MGN--NDRIV 108 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC----------CCHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHh-h---cCC--cchHH
Confidence 3499999999999999999999 899999999999987654322 2677999999886531100 0 000 11111
Q ss_pred HHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCC
Q 048556 369 IMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMIN 448 (478)
Q Consensus 369 ~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~ 448 (478)
+.+..+ ++.... +++..+ .||| +..+|+++|+|||++ ||+.+...+.+.+.+..++
T Consensus 109 ~~~~i~-----~~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLK-----EVAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHH-----HHTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHH-----HHHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 222111 111111 222222 4666 778999999999999 9999999999999887677
Q ss_pred CeEEEEecCchh
Q 048556 449 RTTVIVAHRLST 460 (478)
Q Consensus 449 ~t~i~itH~~~~ 460 (478)
.++|++||+++.
T Consensus 165 ~~~Il~t~~~~~ 176 (354)
T 1sxj_E 165 IRLIMVCDSMSP 176 (354)
T ss_dssp EEEEEEESCSCS
T ss_pred CEEEEEeCCHHH
Confidence 899999999764
No 134
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.48 E-value=1.5e-15 Score=136.21 Aligned_cols=87 Identities=16% Similarity=0.096 Sum_probs=71.9
Q ss_pred EeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEe
Q 048556 264 KDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVS 343 (478)
Q Consensus 264 ~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 343 (478)
+|+++.|. +..+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.... ..+ .+++
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--NIA---GKMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--EET---TEEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--cCC---Ccce
Confidence 45667774 246899999999999999999999999999999999999 99999999998874311 112 2799
Q ss_pred cCCCCCcccHHHHHhc
Q 048556 344 QEPVLFTSSIKDNINY 359 (478)
Q Consensus 344 Q~~~lf~~ti~eNl~~ 359 (478)
|++.+|.-|+.||+.+
T Consensus 82 q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 82 YHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEECTTCSCTTHHHH
T ss_pred eccccccCCcHHHHHH
Confidence 9998886699999853
No 135
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.48 E-value=2.3e-18 Score=158.52 Aligned_cols=154 Identities=14% Similarity=0.096 Sum_probs=103.8
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCc-ccHHHHHhcCCCCCCHH
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT-SSIKDNINYGKDGASIA 367 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNl~~~~~~~~~~ 367 (478)
|++++|+||||||||||++.|++ |.+|.++++|.++... ...++++|....+. .|+++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68899999999999999999997 6679999988665331 24567777664333 37777765310
Q ss_pred HHHHHHHHhcHHHHHHhCCCCccccccC--------CCCCC--ChHHHHHHHHHH------HHcCCCCEEEEeCCCCCCC
Q 048556 368 EIMAAAELANAAKFIDSLPQGLDTMVGE--------HGTQL--SGGQKQRIAIAR------AILKDPRILLLDEATSALD 431 (478)
Q Consensus 368 ~~~~a~~~~~~~~~i~~lp~g~~t~~~~--------~g~~L--SgGq~Qrl~lAR------all~~~~ililDEpts~LD 431 (478)
+ .+.. .|.+..+.. .-..+ |+|++|++.++. +++++|+...+|+ ++|
T Consensus 67 ------~-----~~~~---~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld 129 (189)
T 2bdt_A 67 ------V-----NFLL---AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMG 129 (189)
T ss_dssp ------H-----HHHH---TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------C
T ss_pred ------H-----HHHh---cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCC
Confidence 0 0000 011111100 00123 788888887777 8888888878884 899
Q ss_pred HHHHHHHHHHHHHhcC-CCeEEEEecC-chhhhh-cCEEEEEeCCEEee
Q 048556 432 AESERVVQEALDKIMI-NRTTVIVAHR-LSTVRN-ADLIAVIHQGKLVE 477 (478)
Q Consensus 432 ~~~~~~i~~~l~~~~~-~~t~i~itH~-~~~~~~-~d~i~vl~~G~i~~ 477 (478)
+...+. ++.+....+ +.++|.+||. ++.++. ||+|+ ++|+++.
T Consensus 130 ~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 130 ERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp GGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred HHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 987777 788877643 5799999999 888776 99998 9998753
No 136
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.48 E-value=8.7e-14 Score=141.85 Aligned_cols=74 Identities=28% Similarity=0.419 Sum_probs=67.8
Q ss_pred CCCChHHHHHH------HHHHHHcCC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEE
Q 048556 398 TQLSGGQKQRI------AIARAILKD-PRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVI 470 (478)
Q Consensus 398 ~~LSgGq~Qrl------~lARall~~-~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl 470 (478)
..|||||+||+ ++|||+..+ |+++||||||++||+.+...+.+.|.++.+++++|++||++.....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 58999999987 678999999 99999999999999999999999998876667999999999876679999999
Q ss_pred e
Q 048556 471 H 471 (478)
Q Consensus 471 ~ 471 (478)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 137
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.47 E-value=4.5e-14 Score=141.31 Aligned_cols=164 Identities=15% Similarity=0.100 Sum_probs=108.1
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHH----hhc--ceEEEecCCCCCcc-cHHHHH
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKW----IRG--KIGLVSQEPVLFTS-SIKDNI 357 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~----~r~--~i~~v~Q~~~lf~~-ti~eNl 357 (478)
..++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+......+ +++ .+.+++|+..+++. |+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 45789999999999999999999999999999999999999987765322 233 35599999988875 899999
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHH
Q 048556 358 NYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERV 437 (478)
Q Consensus 358 ~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~ 437 (478)
.++.. .+. +.+ =+||. |... .-..=..+.-.++|++..++++++||.+|. .|
T Consensus 205 ~~~~~-------------~~~-d~v-----liDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~------ 256 (328)
T 3e70_C 205 QHAKA-------------RGI-DVV-----LIDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NA------ 256 (328)
T ss_dssp HHHHH-------------HTC-SEE-----EEEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-TH------
T ss_pred HHHHh-------------ccc-hhh-----HHhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HH------
Confidence 75310 000 000 01221 1100 011123344458999999999999996665 22
Q ss_pred HHHHHHHhc--CCCeEEEEecCchhh----------hhcCEEEEEeCCEEe
Q 048556 438 VQEALDKIM--INRTTVIVAHRLSTV----------RNADLIAVIHQGKLV 476 (478)
Q Consensus 438 i~~~l~~~~--~~~t~i~itH~~~~~----------~~~d~i~vl~~G~i~ 476 (478)
+.+.++.+. .+.|.|++||--.+. ...-.|..+..|+-+
T Consensus 257 ~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 257 IVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 233333332 367999999954321 113467777777543
No 138
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.46 E-value=9.1e-17 Score=165.86 Aligned_cols=128 Identities=14% Similarity=0.160 Sum_probs=88.4
Q ss_pred ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC----CHHHhhcceEEEe---------c
Q 048556 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF----QLKWIRGKIGLVS---------Q 344 (478)
Q Consensus 278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~---------Q 344 (478)
+|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.++|.++... +...+++.+++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56665 4 379999999999999999999999999999999999999877321 1122344555544 8
Q ss_pred CCCCC--c-----ccHHHHHhcCCC---------CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 048556 345 EPVLF--T-----SSIKDNINYGKD---------GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI 408 (478)
Q Consensus 345 ~~~lf--~-----~ti~eNl~~~~~---------~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl 408 (478)
+|.++ . .|+.+|+.++.. ..+..+....+... |++... ....|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~l-----------gl~~~~--~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDM-----------GIEPFL--ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHH-----------TCCHHH--HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHc-----------CCcHHH--HHHHHHHHHHHH-
Confidence 88763 2 388998876321 01112222222222 232221 346799999999
Q ss_pred HHHHHHcCCCCEEE
Q 048556 409 AIARAILKDPRILL 422 (478)
Q Consensus 409 ~lARall~~~~ili 422 (478)
|||+++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999875
No 139
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.45 E-value=9.8e-14 Score=123.15 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=69.8
Q ss_pred ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc--EEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD 355 (478)
Q Consensus 278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G--~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 355 (478)
+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46665 8999999999999999999999999987 47 555544332110
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHH
Q 048556 356 NINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 435 (478)
Q Consensus 356 Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~ 435 (478)
+++.+|++|++|||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 2356899999999998 666558
Q ss_pred HHHHHHHHHhc-CCCe-EEEEecC
Q 048556 436 RVVQEALDKIM-INRT-TVIVAHR 457 (478)
Q Consensus 436 ~~i~~~l~~~~-~~~t-~i~itH~ 457 (478)
+.+++.+.+.. .+++ +|++||+
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 88888887765 3577 7888885
No 140
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.44 E-value=8.7e-14 Score=142.78 Aligned_cols=147 Identities=15% Similarity=0.224 Sum_probs=95.6
Q ss_pred eecCCCEEEEEcCCCCChHHHHHH--HhccCCCCcc-----EEEECCeecC-CCCHHHhhcceEEEecCCCCCcccHHHH
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISL--IERFYDPQAG-----EVLIDGVNLK-EFQLKWIRGKIGLVSQEPVLFTSSIKDN 356 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~l--l~g~~~~~~G-----~i~~~g~~~~-~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 356 (478)
-|++|++++|+||||||||||++. +.+..+++.| .+++++.+.. ......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4566666444 8888887631 1222334455665444 67778
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHH--cCCCCEEEEeCCCCCCCHHH
Q 048556 357 INYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEATSALDAES 434 (478)
Q Consensus 357 l~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARal--l~~~~ililDEpts~LD~~~ 434 (478)
+.+..+. +.++..+. +.-++.+ -.+|+++++||||+.+|...
T Consensus 247 i~~~~~~-~~~~~~~~-----------------------------------l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAY-NADHQLRL-----------------------------------LDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECC-SHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccC-ChHHHHHH-----------------------------------HHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 7776542 22222211 1111111 14799999999999999754
Q ss_pred H------------HHHHHHHHHhc--CCCeEEEEecCc-------------------hhhhh-cCEEEEEeCCE
Q 048556 435 E------------RVVQEALDKIM--INRTTVIVAHRL-------------------STVRN-ADLIAVIHQGK 474 (478)
Q Consensus 435 ~------------~~i~~~l~~~~--~~~t~i~itH~~-------------------~~~~~-~d~i~vl~~G~ 474 (478)
. ..+++.|+++. .+.|+|+|+|.. ..+.+ +|.++.|+.|+
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 3 56777777664 378999999982 12344 89999998763
No 141
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.40 E-value=1.2e-13 Score=125.87 Aligned_cols=111 Identities=15% Similarity=0.197 Sum_probs=75.5
Q ss_pred eeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCC
Q 048556 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKD 362 (478)
Q Consensus 283 s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~ 362 (478)
+|++++|+.++|+||+|||||||++.+++.+.|.+|... .|+ +..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------------------~~~---------~~~-------- 76 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------------------YFF---------DTK-------- 76 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------------------CEE---------EHH--------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------------------EEE---------EHH--------
Confidence 467889999999999999999999999999987666311 111 111
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHH
Q 048556 363 GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESERVVQEA 441 (478)
Q Consensus 363 ~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts-~LD~~~~~~i~~~ 441 (478)
++.+... ..... + ... -....+.+|++|+||||++ ++|+.....+.+.
T Consensus 77 -----~~~~~~~-----~~~~~---~--------~~~----------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 77 -----DLIFRLK-----HLMDE---G--------KDT----------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -----HHHHHHH-----HHHHH---T--------CCS----------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -----HHHHHHH-----HHhcC---c--------hHH----------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 1111110 00000 0 000 0112244999999999996 8999999999998
Q ss_pred HHHhc-CCCeEEEEecCch
Q 048556 442 LDKIM-INRTTVIVAHRLS 459 (478)
Q Consensus 442 l~~~~-~~~t~i~itH~~~ 459 (478)
+.... +++++|++||...
T Consensus 126 l~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHcCCCEEEEcCCCh
Confidence 87664 6789999999874
No 142
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.38 E-value=5.2e-16 Score=151.83 Aligned_cols=144 Identities=17% Similarity=0.163 Sum_probs=105.0
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCC-CCCcc-cHH
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEP-VLFTS-SIK 354 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-~lf~~-ti~ 354 (478)
.+++++++++++| ++|+||||||||||+++|+|...+ |.|.++|.++......+.++.+++++|.+ ..++. ++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 5789999999999 999999999999999999999877 79999999887655555677889999975 34443 677
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC------
Q 048556 355 DNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS------ 428 (478)
Q Consensus 355 eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts------ 428 (478)
||+....+.....+.. .....+.+....|||||+||..+++|+.++|+++ |||+.
T Consensus 110 Deid~~~~~r~~~~~~-----------------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRETG-----------------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC--------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcch-----------------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 7876644321111100 0011112223469999999999999999999974 99864
Q ss_pred ------CCCHHHHHHHHHHHH
Q 048556 429 ------ALDAESERVVQEALD 443 (478)
Q Consensus 429 ------~LD~~~~~~i~~~l~ 443 (478)
--|...+..|++.+.
T Consensus 171 ~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHHT
T ss_pred eEEEeCCcCHHHHHHHHHHHH
Confidence 347777777777654
No 143
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.35 E-value=5.8e-14 Score=139.17 Aligned_cols=117 Identities=15% Similarity=0.065 Sum_probs=76.9
Q ss_pred eeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE---CCeecCCCCHHHhhcceEEEecCCCCC-----cc-cHH
Q 048556 284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGVNLKEFQLKWIRGKIGLVSQEPVLF-----TS-SIK 354 (478)
Q Consensus 284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~lf-----~~-ti~ 354 (478)
+++.+|++++++||||||||||+|+|+ +.+|+.|+|.+ +|.+++........+.++|++|+|.+. .. |+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 456789999999999999999999999 99999999999 998886644221123699999999653 33 78
Q ss_pred HHH--hcC---------C---CC-CCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 355 DNI--NYG---------K---DG-ASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 355 eNl--~~~---------~---~~-~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
||+ .++ . +. ...+.+.++++..++.+. ........|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~----------~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCE----------RYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHH----------HHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHH----------HHHHHHHHHHHHHHHHHHHhc
Confidence 888 443 0 10 112345555555544321 222234579998888999987
No 144
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.27 E-value=6.8e-13 Score=131.40 Aligned_cols=102 Identities=17% Similarity=0.135 Sum_probs=68.4
Q ss_pred eeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE---CCeecCCCCHHHhhcceEEEecCCC-------------
Q 048556 284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGVNLKEFQLKWIRGKIGLVSQEPV------------- 347 (478)
Q Consensus 284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~------------- 347 (478)
|++.+|++++|+||||||||||+|+|+|+..|+.|+|.+ +|.+++........+.++||+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 567789999999999999999999999999999999999 9998876542211246899999985
Q ss_pred ---CCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcH-HHHHHhCC
Q 048556 348 ---LFTS-SIKDNINYGKD---GASIAEIMAAAELANA-AKFIDSLP 386 (478)
Q Consensus 348 ---lf~~-ti~eNl~~~~~---~~~~~~~~~a~~~~~~-~~~i~~lp 386 (478)
+|+. |+ +|+.++.- ....+++.++++..++ .+.....|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 4655 78 99987531 1223567788888877 35555444
No 145
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.24 E-value=1.5e-13 Score=136.48 Aligned_cols=91 Identities=18% Similarity=0.266 Sum_probs=75.4
Q ss_pred ccEEEEeEEEECCCCCCCcccccceeee-------------------cCCCEEEEEcCCCCChHHHHHHHhccCC--CCc
Q 048556 259 GDIELKDIYFSYPSRPGEQIFNGFSLSI-------------------PSGTTAALVGQSGSGKSTVISLIERFYD--PQA 317 (478)
Q Consensus 259 ~~i~~~~v~~~y~~~~~~~~l~~is~~i-------------------~~G~~~~ivG~sGsGKSTL~~ll~g~~~--~~~ 317 (478)
+.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|+|++. |++
T Consensus 36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 4589999999993 6999999998 9999999999999999999999999998 999
Q ss_pred cEEEE---CCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHHhc
Q 048556 318 GEVLI---DGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINY 359 (478)
Q Consensus 318 G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~ 359 (478)
|+|.+ ||.... . ..++.++++ |+..++.. |+.+|+.+
T Consensus 111 G~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 111 RRVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp CCEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred CeEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 99999 887642 2 345668888 76665543 77777654
No 146
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.24 E-value=4.4e-14 Score=134.19 Aligned_cols=38 Identities=26% Similarity=0.227 Sum_probs=22.9
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHh-ccCC
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIE-RFYD 314 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~-g~~~ 314 (478)
...+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4578999999999999999999999999999999 9983
No 147
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.22 E-value=1.1e-11 Score=114.75 Aligned_cols=72 Identities=11% Similarity=0.100 Sum_probs=56.3
Q ss_pred eeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHHh
Q 048556 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNIN 358 (478)
Q Consensus 283 s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~ 358 (478)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++..|.. +..+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57788999999999999999999999999974 588888887766544457789999999988865 5555554
No 148
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.19 E-value=2.7e-12 Score=132.28 Aligned_cols=153 Identities=20% Similarity=0.204 Sum_probs=90.8
Q ss_pred cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHh
Q 048556 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNIN 358 (478)
Q Consensus 279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~ 358 (478)
-++++|+++.|+.++|+|+||||||||++.|++..+ .+.+.+...+ ...+++|+++.. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 478999999999999999999999999999999843 3444443332 345666666541 1112222221
Q ss_pred cCCC-----CCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556 359 YGKD-----GASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433 (478)
Q Consensus 359 ~~~~-----~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~ 433 (478)
+... .... +..+.. ..++..+.. +|-. .+...+||+||+|+.++||+|..+|.++++ +.+|..
T Consensus 215 li~~a~~~~~L~~-~fl~~~--era~~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGL-EFLRHI--ARTRVLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCH-HHHHHH--TSSSEEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhH-HHHHHH--HHHHhhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 1100 0111 111100 000001100 0100 223457999999999999999999999999 899988
Q ss_pred HHHHHHHHHHHh-c-CCCeEEEEec
Q 048556 434 SERVVQEALDKI-M-INRTTVIVAH 456 (478)
Q Consensus 434 ~~~~i~~~l~~~-~-~~~t~i~itH 456 (478)
.+ ...+.+.+. . .+.+++.+|.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 66 344444333 2 3457776653
No 149
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.18 E-value=5.9e-11 Score=117.05 Aligned_cols=142 Identities=15% Similarity=0.139 Sum_probs=100.1
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
+.++++++.|+.. + ++++|+ +|++++++|++|+||||++..|++++.+..|+|.+.+.|...-...
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------- 142 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-------
Confidence 5667788888531 2 688888 8999999999999999999999999999899999987775431100
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE
Q 048556 341 LVSQEPVLFTSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI 420 (478)
Q Consensus 341 ~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i 420 (478)
+.+ ....+. . |++-.-. +......+.+|.+++++...++++
T Consensus 143 --------------~ql------------~~~~~~-------~----~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 143 --------------EQL------------RLLGEK-------V----GVPVLEV--MDGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp --------------HHH------------HHHHHH-------H----TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred --------------HHH------------HHhccc-------C----CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCE
Confidence 000 000010 0 2221111 112334566789999998889999
Q ss_pred EEEeCC-CCCCCHHHHHHHHHHHHHhcCCCeEEEEe
Q 048556 421 LLLDEA-TSALDAESERVVQEALDKIMINRTTVIVA 455 (478)
Q Consensus 421 lilDEp-ts~LD~~~~~~i~~~l~~~~~~~t~i~it 455 (478)
+|+||| ++++|...-..+.+..+....+.+++++.
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 999999 99999988888888777666666665554
No 150
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.18 E-value=3.9e-11 Score=118.41 Aligned_cols=137 Identities=12% Similarity=0.187 Sum_probs=87.9
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCH
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASI 366 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~ 366 (478)
++|++++++||+||||||++..|++.+.+++| +++.++.+|++ ..+..|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH-------
Confidence 57999999999999999999999999998777 24667777763 2233333321
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 048556 367 AEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM 446 (478)
Q Consensus 367 ~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 446 (478)
..+ .. |+.-... .+ ++..+.+++++ ++|+++|+| |+++|+..+..+.+..+-..
T Consensus 156 -----~~~---------~~--gl~~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 156 -----YAE---------LL--QAPLEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -----HHT---------TT--TCCCCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -----HHH---------hc--CCCeEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 111 00 2211111 12 34456777764 899999999 99999877665555443322
Q ss_pred ---CCCeEEEE--ecCchhhhh-cCEEEEEeCCEEe
Q 048556 447 ---INRTTVIV--AHRLSTVRN-ADLIAVIHQGKLV 476 (478)
Q Consensus 447 ---~~~t~i~i--tH~~~~~~~-~d~i~vl~~G~i~ 476 (478)
.+.+++++ +|..+.+.. ++++..++.|.++
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEE
Confidence 23345555 898777665 6766555555554
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.17 E-value=4.6e-11 Score=118.29 Aligned_cols=99 Identities=14% Similarity=0.323 Sum_probs=73.2
Q ss_pred cceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcC
Q 048556 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360 (478)
Q Consensus 281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~ 360 (478)
+++++.++|++++|+||+||||||+++.|++.+.+..|+|.+.+.|.... ...++
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~eq---- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAIEQ---- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHHHH----
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHHHH----
Confidence 35666789999999999999999999999999999888998877664210 01111
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHH---HHHHHHcCCCCEEEEeCCCC
Q 048556 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRI---AIARAILKDPRILLLDEATS 428 (478)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl---~lARall~~~~ililDEpts 428 (478)
+ ..+.+.. |++.. ...|||+.|++ ++++|+.++|+++|+|||..
T Consensus 151 --------L---------~~~~~~~--gl~~~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 151 --------L---------KIWGERV--GATVI-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp --------H---------HHHHHHH--TCEEE-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred --------H---------HHHHHHc--CCcEE-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1 1122211 33221 24589999999 99999999999999999985
No 152
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.16 E-value=4.4e-13 Score=126.38 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=96.5
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccC---CCCccEEEE--------CCeecCC-CCHHHhhcceEEEecCC------CCC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLI--------DGVNLKE-FQLKWIRGKIGLVSQEP------VLF 349 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~---~~~~G~i~~--------~g~~~~~-~~~~~~r~~i~~v~Q~~------~lf 349 (478)
.+.+++|+||+||||||++++|++.+ .++.|++.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 778899887 6777653 45567888999999875 345
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccc-cCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 048556 350 TSSIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428 (478)
Q Consensus 350 ~~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~-~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts 428 (478)
..++.+++. .+++..++..+..++.+...+.+..+.+ .++|.-++|+ .++++++++++++|+.+++.
T Consensus 84 ~~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 84 GEDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp TEECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred CeeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 557778763 4677777777777777766555554444 3456677776 45667888999999888753
No 153
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.15 E-value=1.1e-11 Score=129.59 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=50.8
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ 331 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~ 331 (478)
++|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 489999999999 999999999999999999999999999999999999886544
No 154
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.11 E-value=5.8e-14 Score=141.11 Aligned_cols=162 Identities=16% Similarity=0.208 Sum_probs=100.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCC-------CEEEEEcCCCCChHHHHHHHhccC----CCCccEEEECCeecCC
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSG-------TTAALVGQSGSGKSTVISLIERFY----DPQAGEVLIDGVNLKE 329 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G-------~~~~ivG~sGsGKSTL~~ll~g~~----~~~~G~i~~~g~~~~~ 329 (478)
++.++++..|.+ ..+++++++.+++| +.++|+||+|+|||||++++++.. .+.+|.+..++.++..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 344455555642 36899999999877 899999999999999999999998 6777877766655433
Q ss_pred CCHHHhhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHH-HHHHHhcHHHHHHhCC-CCccccccCCCCCCChHHHHH
Q 048556 330 FQLKWIRGKIGLVSQEPVLFTSSIKDNINYGKDGASIAEIM-AAAELANAAKFIDSLP-QGLDTMVGEHGTQLSGGQKQR 407 (478)
Q Consensus 330 ~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~~~~~~~~~~~-~a~~~~~~~~~i~~lp-~g~~t~~~~~g~~LSgGq~Qr 407 (478)
......+..|.+++|...++. ++.|++.........+-+. .......+.. .+| -++.. .......||+|++||
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~---~l~~~~li~-at~~~~~Ls~~l~sR 170 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRI---DIQPFTLVG-ATTRSGLLSSPLRSR 170 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC------------------CCCEEEE-EESCGGGSCHHHHTT
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccccc---cCCCeEEEE-ecCCcccCCHHHHHh
Confidence 211112457999999887765 7888774211000000000 0000000111 111 12221 234456899999999
Q ss_pred HHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc
Q 048556 408 IAIARAILKDPRILLLDEATSALDAESERVVQEALDKIM 446 (478)
Q Consensus 408 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~ 446 (478)
++++ .+||+.+.+.+.+.|++..
T Consensus 171 ~~l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 171 FGII----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp CSEE----------------EECCCCCHHHHHHHHHHHH
T ss_pred cCce----------------eeCCCCCHHHHHHHHHHHH
Confidence 8655 6677777777877776653
No 155
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.10 E-value=5.3e-12 Score=121.69 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=62.2
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHh---ccCCCCccEEE--------ECCeecC-CCCHHHhhcceEEEecC------CCC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIE---RFYDPQAGEVL--------IDGVNLK-EFQLKWIRGKIGLVSQE------PVL 348 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~---g~~~~~~G~i~--------~~g~~~~-~~~~~~~r~~i~~v~Q~------~~l 348 (478)
++|++++|+|||||||||++++|+ |++.|++|.+. .+|.++. .....++++.+++++|. .++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 889999999999999999999999 99999999999 9999884 45677889999999964 345
Q ss_pred CcccHHHHHh
Q 048556 349 FTSSIKDNIN 358 (478)
Q Consensus 349 f~~ti~eNl~ 358 (478)
+..++.+|+.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 5667887764
No 156
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.09 E-value=7.1e-12 Score=114.95 Aligned_cols=127 Identities=20% Similarity=0.356 Sum_probs=57.2
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccCC-------------CCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD 355 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 355 (478)
|++++|+||||||||||+++|+|+++ |..|++ +|.++...+.+.+...+ .++..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 777875 77777666666555432 2333333334433
Q ss_pred HHhcCCCCCCHHHHHHHHHH----------hcHHHHHHh--------------CCCCccccccCCCCCCChHHHHHHHHH
Q 048556 356 NINYGKDGASIAEIMAAAEL----------ANAAKFIDS--------------LPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 356 Nl~~~~~~~~~~~~~~a~~~----------~~~~~~i~~--------------lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
|+ +|.+ .+++.+.++. .++.. +.. -++-+...+.++|..-....+||++-|
T Consensus 76 ~~-yg~~---~~~i~~~l~~g~~~il~~~~~g~~~-l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~ 150 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSGKTCILDIDMQGVKS-VKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 150 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTTCEEEEECCHHHHHH-HHTCGGGCCEEEEEECSCC-------------------------
T ss_pred ee-ccCc---HHHHHHHHHcCCeEEEEEcHHHHHH-HHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 33 3322 1222222221 11111 222 124556666677877777888899999
Q ss_pred HHHc-----CCCCEEEEeC
Q 048556 412 RAIL-----KDPRILLLDE 425 (478)
Q Consensus 412 Rall-----~~~~ililDE 425 (478)
+.-+ +.++.+|..+
T Consensus 151 ~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 151 QAELAYAETGAHDKVIVND 169 (186)
T ss_dssp --------CCCCSEEEECS
T ss_pred HHHHHhhcccCCcEEEECc
Confidence 8765 5567777664
No 157
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.07 E-value=1.3e-13 Score=134.83 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=102.9
Q ss_pred EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEE
Q 048556 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL 341 (478)
Q Consensus 262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 341 (478)
+++++.+.|.+ ..+++++++++++| ++|+||||||||||++.|++... .|.|.+++.++.+......++.+.+
T Consensus 51 ~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 45566666642 36899999999999 99999999999999999999985 7999999887654443444566778
Q ss_pred EecCCC-CCcc-cHHHHHh-cCCCCCC-----HHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 342 VSQEPV-LFTS-SIKDNIN-YGKDGAS-----IAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 342 v~Q~~~-lf~~-ti~eNl~-~~~~~~~-----~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
++|+.. .++. ++.||+. ++..... .++..+. +.+.+ ..|||||+||..+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH-----HHHHH---------------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEE
Confidence 888764 3433 6677773 3321110 1111111 11122 2478999999999999
Q ss_pred HcCCCCEEEEeCCCC------------CCCHHHHHHHHHHH
Q 048556 414 ILKDPRILLLDEATS------------ALDAESERVVQEAL 442 (478)
Q Consensus 414 ll~~~~ililDEpts------------~LD~~~~~~i~~~l 442 (478)
+..+|++ +|++.. -.|.+.+..+++..
T Consensus 184 ~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 222 (278)
T 1iy2_A 184 ATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH 222 (278)
T ss_dssp EESCTTS--SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHH
T ss_pred ecCCchh--CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHH
Confidence 9999986 676642 23555666666543
No 158
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.07 E-value=7.2e-12 Score=123.92 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=45.3
Q ss_pred eeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE---CCeecCCCCHHHhhcceEEEecCCCCCc-----ccHHH
Q 048556 284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGVNLKEFQLKWIRGKIGLVSQEPVLFT-----SSIKD 355 (478)
Q Consensus 284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-----~ti~e 355 (478)
+++.+|++++|+||||+|||||+|.|+|...|..|+|.+ +|.+++... +.++..++|++|.|.++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 667899999999999999999999999999999999999 888776532 112223899999998764 377 8
Q ss_pred HHh
Q 048556 356 NIN 358 (478)
Q Consensus 356 Nl~ 358 (478)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 984
No 159
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.05 E-value=6.5e-11 Score=112.45 Aligned_cols=167 Identities=13% Similarity=0.140 Sum_probs=88.3
Q ss_pred cccccc-eeeecCCCEEEEEcCCCCChHHHHH-HHhccCCCCccEEEECCeecCCCCHHHhh---cceEEEecCCCCCcc
Q 048556 277 QIFNGF-SLSIPSGTTAALVGQSGSGKSTVIS-LIERFYDPQAGEVLIDGVNLKEFQLKWIR---GKIGLVSQEPVLFTS 351 (478)
Q Consensus 277 ~~l~~i-s~~i~~G~~~~ivG~sGsGKSTL~~-ll~g~~~~~~G~i~~~g~~~~~~~~~~~r---~~i~~v~Q~~~lf~~ 351 (478)
+.|+++ .--+++|+.++|+||+|||||||+. ++.+..++..+.+++++.. +.++++ +.+++.+|+...
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~--- 82 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE--- 82 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH---
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh---
Confidence 456666 5679999999999999999999955 4455554444445554432 222222 233444332100
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCC
Q 048556 352 SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSA 429 (478)
Q Consensus 352 ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall--~~~~ililDEpts~ 429 (478)
.+|+.+... ..+. +...+. .+....+. +....+....++.++ .+|+++++|++++-
T Consensus 83 --~~~l~~~~~--~~~~-------------~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 83 --KGMFAMVDA--FTAG-------------IGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp --HTSEEEEEC--STTT-------------TCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred --CCcEEEEec--chhh-------------cccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 001111100 0000 000000 00001011 112233334444444 47999999999998
Q ss_pred C--CHHHHHHHHHHHHHhc--CCCeEEEEecCchh---------hhhcCEEEEEeC
Q 048556 430 L--DAESERVVQEALDKIM--INRTTVIVAHRLST---------VRNADLIAVIHQ 472 (478)
Q Consensus 430 L--D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~---------~~~~d~i~vl~~ 472 (478)
+ |+.....++..+.+.. .++|+++++|.... ...||.++.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 8 5544455555555442 47899999998764 244899999854
No 160
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.04 E-value=5.2e-14 Score=143.83 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=105.4
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhc------------cCCCCccEEEECCeecCCCCH-HHhhcc---eEEEecCCCC
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIER------------FYDPQAGEVLIDGVNLKEFQL-KWIRGK---IGLVSQEPVL 348 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g------------~~~~~~G~i~~~g~~~~~~~~-~~~r~~---i~~v~Q~~~l 348 (478)
.+++|.+++|+|++|+|||||++.|.| ..+|+.|.+.++|..+..+.. -.-++. ..++.+.|.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 568899999999999999999999999 668999999998854321110 000112 2467777776
Q ss_pred Ccc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccc----cCCCCCCChHHHHHHHHHHHHcCCC--CEE
Q 048556 349 FTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMV----GEHGTQLSGGQKQRIAIARAILKDP--RIL 421 (478)
Q Consensus 349 f~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~----~~~g~~LSgGq~Qrl~lARall~~~--~il 421 (478)
..+ |..|++. ++.....+ .. +.+-..+ ......+||+. +| ++.
T Consensus 96 ~~~~s~~e~L~--------~~fl~~ir---------~~-d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 96 TKGASTGVGLG--------NAFLSHVR---------AV-DAIYQVVRAFDDAEIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CCCCCSSSSSC--------HHHHHHHT---------TC-SEEEEEEECCCTTCSSCCSSSS------------CHHHHHH
T ss_pred ccCCcHHHHHH--------HHHHHHHH---------HH-HHHHHHHhccccceeeeecccc------------Ccchhhh
Confidence 653 3322220 11111111 10 1111111 12233355552 89 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHh-cC-CCeEEEEecCchhhhh-cCEEE-EEeCC-EEe
Q 048556 422 LLDEATSALDAESERVVQEALDKI-MI-NRTTVIVAHRLSTVRN-ADLIA-VIHQG-KLV 476 (478)
Q Consensus 422 ilDEpts~LD~~~~~~i~~~l~~~-~~-~~t~i~itH~~~~~~~-~d~i~-vl~~G-~i~ 476 (478)
++|||++.+|+...++.++.+... .. +.|+ ++|.+..+.. ||++. +|++| +++
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~ 203 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPI 203 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCG
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCcee
Confidence 999999999999999999999886 54 4554 3999988766 89998 88999 654
No 161
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.04 E-value=1.2e-11 Score=134.03 Aligned_cols=157 Identities=15% Similarity=0.186 Sum_probs=104.4
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCc-cEEEECCeecCCCCHHHhhcceEEEecCC--------
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLIDGVNLKEFQLKWIRGKIGLVSQEP-------- 346 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~-G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-------- 346 (478)
..+++++++.+++|+.++|+||||||||||++.|+++.++.. |.+.+++.+.... ...++++|+..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 468999999999999999999999999999999999999887 7888888766543 45688888754
Q ss_pred --------------CCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 048556 347 --------------VLFTS-SIKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIA 411 (478)
Q Consensus 347 --------------~lf~~-ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lA 411 (478)
+.|.. ++.+|+..++.......+... ......+.+... +. -......+|+|+.|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~----~~-~~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDV----RH-DPFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEE----CC-CCC----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceE----Ee-chhhcCCccccccccccCc
Confidence 22221 344444432211000000000 001111222111 11 1122245999999999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDK 444 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~ 444 (478)
+....++.+|+|||... |++.....+.+.|.+
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999998 899999999998874
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.02 E-value=2.2e-13 Score=131.06 Aligned_cols=153 Identities=19% Similarity=0.225 Sum_probs=103.4
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceE
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIG 340 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 340 (478)
.+++++++.|.+ ..+++++++++++| ++|+||||||||||++.+++... .|.+.++|.++........++.+.
T Consensus 26 ~~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 456677776742 36899999999999 99999999999999999999885 789999988765443334455677
Q ss_pred EEecCCC-CCcc-cHHHHH-hcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048556 341 LVSQEPV-LFTS-SIKDNI-NYGKDGA-----SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIAR 412 (478)
Q Consensus 341 ~v~Q~~~-lf~~-ti~eNl-~~~~~~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lAR 412 (478)
+++|... .++. ++.||+ .++.... ..++..+. +.+.+ ..|||||+||..+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHH---------------HHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEE
Confidence 7888753 3333 566666 3332110 01111111 11122 247799999999999
Q ss_pred HHcCCCCEEEEeCCCCC------------CCHHHHHHHHHHH
Q 048556 413 AILKDPRILLLDEATSA------------LDAESERVVQEAL 442 (478)
Q Consensus 413 all~~~~ililDEpts~------------LD~~~~~~i~~~l 442 (478)
|+..+|++ +|++... -|.+.+..+++..
T Consensus 159 a~t~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 159 AATNRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp EEESCGGG--SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred EccCCchh--CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 99999986 7877642 3566666666544
No 163
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.01 E-value=5.4e-11 Score=109.19 Aligned_cols=141 Identities=19% Similarity=0.184 Sum_probs=77.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCC-----------CccEEEECCeecCC--CCHHHhhcceEEEecCCCCCcc--cHHH
Q 048556 291 TAALVGQSGSGKSTVISLIERFYDP-----------QAGEVLIDGVNLKE--FQLKWIRGKIGLVSQEPVLFTS--SIKD 355 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~~~lf~~--ti~e 355 (478)
+++|+|++|||||||++.++|...+ +.|+|.++|.++.- ++....++..++++|...-..+ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7899999999999999999998765 57999999976531 2211112223333331100000 1111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCcc-ccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH
Q 048556 356 NINYGKDGASIAEIMAAAELANAAKFIDS-LPQGLD-TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 433 (478)
Q Consensus 356 Nl~~~~~~~~~~~~~~a~~~~~~~~~i~~-lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~ 433 (478)
+ ........... ..+.+.. .+...- -.++.. ..|..-..+....||+++.+|+++++| ||++|..
T Consensus 111 ~-------~~~~s~~~~~~---~~~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~ 177 (191)
T 1oix_A 111 I-------AKHLTYENVER---WLKELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST 177 (191)
T ss_dssp T-------TCHHHHHTHHH---HHHHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred C-------cCHHHHHHHHH---HHHHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence 1 11111110000 0001111 111110 111211 112222223478899999999999999 9999999
Q ss_pred HHHHHHHHHHH
Q 048556 434 SERVVQEALDK 444 (478)
Q Consensus 434 ~~~~i~~~l~~ 444 (478)
+...+++.|.+
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999998865
No 164
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.95 E-value=1.8e-11 Score=115.96 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=52.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCC--------
Q 048556 260 DIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQ-------- 331 (478)
Q Consensus 260 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~-------- 331 (478)
.++++|++..|. . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...+
T Consensus 9 ~l~l~~~~~~~~-----~-----~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA-----R-----TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE-----E-----EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC-----C-----EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 488888865542 1 466666 899999999999999999999999999999999999884332
Q ss_pred HHHhhcceEEEecC
Q 048556 332 LKWIRGKIGLVSQE 345 (478)
Q Consensus 332 ~~~~r~~i~~v~Q~ 345 (478)
....+..++|++|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 22346789999985
No 165
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.94 E-value=2.2e-09 Score=108.24 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=28.9
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 320 (478)
-+++|+++.|.||+|||||||+..++.......|.+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~v 92 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIA 92 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeE
Confidence 578999999999999999999888876554444443
No 166
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.93 E-value=7.8e-10 Score=115.56 Aligned_cols=176 Identities=8% Similarity=0.125 Sum_probs=109.9
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc-EEEECCeecCCCCHHHhhcce-EEEecCCCCCcccHH
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGVNLKEFQLKWIRGKI-GLVSQEPVLFTSSIK 354 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~r~~i-~~v~Q~~~lf~~ti~ 354 (478)
+.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .+.+.+.+ .+..++.+++ +....-+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~-------~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNIN-------A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCC-------H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCC-------H
Confidence 568888878999999999999999999999999998776545 56654433 3444443332 1111000 1
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCCCCH
Q 048556 355 DNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSALDA 432 (478)
Q Consensus 355 eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall--~~~~ililDEpts~LD~ 432 (478)
+.+.-| ..++++..+..+. .+.+...| -.+.+ ...+|.+|.+ +.||++. .+|+++++|+++.-.+.
T Consensus 261 ~~l~~g--~l~~~~~~~~~~a---~~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTG--KLTPEDWGKLTMA---MGSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTS--CCCHHHHHHHHHH---HHHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcC--CCCHHHHHHHHHH---HHHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 223223 2344443332222 22333322 12222 3478999876 6777776 57999999999987743
Q ss_pred --------HHHHHHHHHHHHhc--CCCeEEEEec---------C--ch--------hhh-hcCEEEEEeCCE
Q 048556 433 --------ESERVVQEALDKIM--INRTTVIVAH---------R--LS--------TVR-NADLIAVIHQGK 474 (478)
Q Consensus 433 --------~~~~~i~~~l~~~~--~~~t~i~itH---------~--~~--------~~~-~~d~i~vl~~G~ 474 (478)
.....+.+.|+.+. .+.++|+++| + +. .++ .||.|+.|..++
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 22356666676654 3789999999 1 32 344 499999997653
No 167
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.90 E-value=5.4e-11 Score=125.16 Aligned_cols=158 Identities=19% Similarity=0.280 Sum_probs=93.3
Q ss_pred cceeeecCCCEEEEEcCCCCChHHHHHHHhc--cCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCc---cc---
Q 048556 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT---SS--- 352 (478)
Q Consensus 281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g--~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~---~t--- 352 (478)
.+++++.+|..+.|.|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. -|+++. ..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence 4788899999999999999999999999876 67777788888777766543333221 122221 00
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCC---CCCCChHHHHHH----------HHHHHHcCCCC
Q 048556 353 IKDNINYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEH---GTQLSGGQKQRI----------AIARAILKDPR 419 (478)
Q Consensus 353 i~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~---g~~LSgGq~Qrl----------~lARall~~~~ 419 (478)
+.+.+.. ..+|+.+. .+.+... |....-+.+ ...+|+||+|+. ++|+++...|.
T Consensus 232 a~~~L~~-----~~~EmerR------~~ll~~~--Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 232 AANALRW-----CVNEMERR------YKLMSAL--GVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHH-----HHHHHHHH------HHHHHHT--TCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHH-----HHHHHHHH------HHHHHHc--CCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCc
Confidence 1111110 01111111 1222222 222211110 124677877652 35677778898
Q ss_pred -EEEEeCCCCCCCHHHHHHHHHHHHHh---c--CCCeEEEEecCch
Q 048556 420 -ILLLDEATSALDAESERVVQEALDKI---M--INRTTVIVAHRLS 459 (478)
Q Consensus 420 -ililDEpts~LD~~~~~~i~~~l~~~---~--~~~t~i~itH~~~ 459 (478)
++++||+++.+|.. ...+.+.+.++ . .+.++|++|||++
T Consensus 299 ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 78899999998843 23444444433 2 2679999999997
No 168
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.88 E-value=1.1e-10 Score=107.91 Aligned_cols=73 Identities=25% Similarity=0.321 Sum_probs=62.1
Q ss_pred eeecCCCEEEEEcCCCCChHHHHHHHhccCC-------------CCccEEEECCeecCCCCHHHhhcceEEEecCCCCCc
Q 048556 284 LSIPSGTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFT 350 (478)
Q Consensus 284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~ 350 (478)
+..-+|+.++|+||||||||||++.|++.++ |..|+ +||.+..-++.+++++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 4445899999999999999999999999886 77888 799999888999988865 68899999
Q ss_pred ccHHHHHhcCCC
Q 048556 351 SSIKDNINYGKD 362 (478)
Q Consensus 351 ~ti~eNl~~~~~ 362 (478)
+++.+| .+|.+
T Consensus 89 ~~~~~n-~YGt~ 99 (197)
T 3ney_A 89 GSYQGN-MFGTK 99 (197)
T ss_dssp EEETTE-EEEEE
T ss_pred hhhhce-ecccc
Confidence 999999 47754
No 169
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.81 E-value=3.3e-11 Score=122.57 Aligned_cols=137 Identities=13% Similarity=0.144 Sum_probs=86.7
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHH
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDN 356 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 356 (478)
++++++++.+++|+.++|+||+|||||||+++|+|.+ +|++..-+.+ + +.++..++++||...+| .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~~~--~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVNLP--L---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCSSC--T---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEecc--c---hhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999964 6777541111 1 11233477888876542 223
Q ss_pred HhcCCC---CC-CHHHHHHHHHHhcHHHHHHh---------CCCCcc-----ccccCCCCCCChHHHHHHHHHHHHcCCC
Q 048556 357 INYGKD---GA-SIAEIMAAAELANAAKFIDS---------LPQGLD-----TMVGEHGTQLSGGQKQRIAIARAILKDP 418 (478)
Q Consensus 357 l~~~~~---~~-~~~~~~~a~~~~~~~~~i~~---------lp~g~~-----t~~~~~g~~LSgGq~Qrl~lARall~~~ 418 (478)
+..... .. ....+. ....+.+.+.. -|+-++ -.+..+...+++|++||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 332221 00 001110 11223333321 011111 1234456678999999999988889999
Q ss_pred CEEE-EeCCCC
Q 048556 419 RILL-LDEATS 428 (478)
Q Consensus 419 ~ili-lDEpts 428 (478)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999887
No 170
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.80 E-value=9.4e-10 Score=102.17 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=45.1
Q ss_pred cceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcC
Q 048556 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360 (478)
Q Consensus 281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~ 360 (478)
++--++++|++++|+|++||||||+++.|.+.++ .+.+++|++.++++ +|+.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 3445788999999999999999999999999874 37899999988876 566554
Q ss_pred C
Q 048556 361 K 361 (478)
Q Consensus 361 ~ 361 (478)
.
T Consensus 67 ~ 67 (207)
T 2qt1_A 67 K 67 (207)
T ss_dssp T
T ss_pred c
Confidence 3
No 171
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.79 E-value=1.7e-10 Score=105.12 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=53.8
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCC-CccEEE----------ECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVL----------IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD 355 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~----------~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 355 (478)
.+|++++|+||||||||||+++|++.+++ ..|.|. ++|.++...+.+++++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999863 345543 35666666676776653 56778888888888
Q ss_pred HHhcCC
Q 048556 356 NINYGK 361 (478)
Q Consensus 356 Nl~~~~ 361 (478)
| .+|.
T Consensus 80 n-~yg~ 84 (180)
T 1kgd_A 80 A-MYGT 84 (180)
T ss_dssp E-EEEE
T ss_pred c-cccc
Confidence 8 4554
No 172
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.78 E-value=2.6e-09 Score=98.35 Aligned_cols=137 Identities=20% Similarity=0.225 Sum_probs=74.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC-----C------CccEEEECCeecC----CCC-HHHhhcceEEEecCCC--C--Cc
Q 048556 291 TAALVGQSGSGKSTVISLIERFYD-----P------QAGEVLIDGVNLK----EFQ-LKWIRGKIGLVSQEPV--L--FT 350 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~-----~------~~G~i~~~g~~~~----~~~-~~~~r~~i~~v~Q~~~--l--f~ 350 (478)
+++|+|++|||||||++.++|... | ..|+|.++|.++. +.+ .+.+++......++.. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 689999999999999999999842 3 3578999997652 222 2222322222223221 1 11
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCcc-ccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC
Q 048556 351 SSIKDNINYGKDGASIAEIMAAAELANAAKFIDS-LPQGLD-TMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 428 (478)
Q Consensus 351 ~ti~eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~-lp~g~~-t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts 428 (478)
.+-.. +.+++.... +.+.. .+.+.- -.++..- .|..-.......||+++.+|++.++| ||
T Consensus 87 ~~~~~---------s~~~~~~~~------~~~~~~~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~~d--~S 148 (199)
T 2f9l_A 87 IAKHL---------TYENVERWL------KELRDHADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNNLSFIE--TS 148 (199)
T ss_dssp TTCHH---------HHHTHHHHH------HHHHHHSCTTCEEEEEEECT-TCGGGCCSCHHHHHHHHHHTTCEEEE--CC
T ss_pred CcCHH---------HHHHHHHHH------HHHHHhcCCCCeEEEEEECc-ccccccCcCHHHHHHHHHHcCCeEEE--Ee
Confidence 11000 011111100 11111 111111 1112211 12111112245689999999999999 99
Q ss_pred CCCHHHHHHHHHHHHHh
Q 048556 429 ALDAESERVVQEALDKI 445 (478)
Q Consensus 429 ~LD~~~~~~i~~~l~~~ 445 (478)
++|......+++.|.+.
T Consensus 149 al~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 149 ALDSTNVEEAFKNILTE 165 (199)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999888887553
No 173
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.76 E-value=2.6e-09 Score=116.68 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=95.1
Q ss_pred eeeecCCCEEEEEcCCCCChHHHHHHHhccCCC--CccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHHHhcC
Q 048556 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDNINYG 360 (478)
Q Consensus 283 s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNl~~~ 360 (478)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.+++.+|...++..+++.|+.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 457889999999999999999999999987765 67988 789999999999989999999999888877666665421
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHH
Q 048556 361 KDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQE 440 (478)
Q Consensus 361 ~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~ 440 (478)
|...+ ++ .....- .-..++.++++| |+.++++.+++.+ +
T Consensus 82 -pG~~~---------------------------------f~---~~~~~~--l~~ad~~ilVvD-~~~g~~~qt~~~~-~ 120 (665)
T 2dy1_A 82 -PGYGD---------------------------------FV---GEIRGA--LEAADAALVAVS-AEAGVQVGTERAW-T 120 (665)
T ss_dssp -CCSGG---------------------------------GH---HHHHHH--HHHCSEEEEEEE-TTTCSCHHHHHHH-H
T ss_pred -CCccc---------------------------------hH---HHHHHH--HhhcCcEEEEEc-CCcccchhHHHHH-H
Confidence 11110 00 001111 112466788888 9999998887444 3
Q ss_pred HHHHhcCCCeEEEEecCchhh
Q 048556 441 ALDKIMINRTTVIVAHRLSTV 461 (478)
Q Consensus 441 ~l~~~~~~~t~i~itH~~~~~ 461 (478)
.++. .+.++|++.|+++..
T Consensus 121 ~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 121 VAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHH--TTCCEEEEEECGGGC
T ss_pred HHHH--ccCCEEEEecCCchh
Confidence 3333 356788888887653
No 174
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.65 E-value=2.4e-09 Score=102.85 Aligned_cols=52 Identities=27% Similarity=0.361 Sum_probs=35.9
Q ss_pred cEEEEeE-EEECCCCCCCcccccceeeecC---CCEEEEEcCCCCChHHHHHHHhccC
Q 048556 260 DIELKDI-YFSYPSRPGEQIFNGFSLSIPS---GTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 260 ~i~~~~v-~~~y~~~~~~~~l~~is~~i~~---G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++++|+ +|+|.+ +.++|+|+||+|++ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 35799999999999 9999999999999999999999854
No 175
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.63 E-value=5.4e-08 Score=101.82 Aligned_cols=114 Identities=23% Similarity=0.316 Sum_probs=75.4
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHH
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDN 356 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 356 (478)
..++++++.+++| +.|+||+|+|||||++.+++..... +-++ +..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~----------------------f~~i---------s~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP----------------------FFHI---------SGSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC----------------------EEEE---------EGGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC----------------------eeeC---------CHHHH
Confidence 4677888888888 8899999999999999999843210 1111 00000
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCC---------
Q 048556 357 INYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT--------- 427 (478)
Q Consensus 357 l~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpt--------- 427 (478)
.. ..+| .|++++|-.+++|....|.++++||+.
T Consensus 86 ~~--------------------------------~~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 86 VE--------------------------------LFVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp TT--------------------------------CCTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred HH--------------------------------HHhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence 00 0011 267888999999999999999999993
Q ss_pred -CCCCHHHHHHHHHHHHHhc-----CCCeEEEEecCchhh
Q 048556 428 -SALDAESERVVQEALDKIM-----INRTTVIVAHRLSTV 461 (478)
Q Consensus 428 -s~LD~~~~~~i~~~l~~~~-----~~~t~i~itH~~~~~ 461 (478)
++.|...++.+.+.+..+. .+..+|.+||+++.+
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 4667666666666665441 345788899998654
No 176
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.63 E-value=3.9e-09 Score=97.62 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=48.7
Q ss_pred ceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHH
Q 048556 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNI 357 (478)
Q Consensus 282 is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl 357 (478)
..++-++|++++|+||||||||||+++|++.+ |.+.++|.++.... ...+...++++|++..+.. ++.+|+
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCcccccHHHHHHHH
Confidence 34677899999999999999999999999987 89999998775321 1122346888887655443 455554
No 177
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.61 E-value=5.1e-08 Score=98.54 Aligned_cols=161 Identities=17% Similarity=0.154 Sum_probs=83.5
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhc--cCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHH
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIK 354 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g--~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 354 (478)
.+|++++++++ .++++|++|||||||++.|.| +.++.+|.++-....+.-.+...-.+..+..++.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~------- 94 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPR------- 94 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTT-------
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCC-------
Confidence 58899999998 999999999999999999999 667777766544433211110000122333332221
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHh---------------CCCCcc-ccccC-------CCCCCChHHHHHHHHH
Q 048556 355 DNINYGKDGASIAEIMAAAELANAAKFIDS---------------LPQGLD-TMVGE-------HGTQLSGGQKQRIAIA 411 (478)
Q Consensus 355 eNl~~~~~~~~~~~~~~a~~~~~~~~~i~~---------------lp~g~~-t~~~~-------~g~~LSgGq~Qrl~lA 411 (478)
....+.+++........ +.+.. -|.+.+ +.++- .+...++.++|+..++
T Consensus 95 ------~~~~~~~~v~~~i~~~~--~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~ 166 (360)
T 3t34_A 95 ------KKFTDFAAVRKEIQDET--DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMV 166 (360)
T ss_dssp ------CCBSCHHHHHHHHHHHH--HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHH
T ss_pred ------cccCCHHHHHHHHHHHH--HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHH
Confidence 01112222222211100 00000 011110 11111 1124678899999999
Q ss_pred HHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEec
Q 048556 412 RAILKDPRILLLDEATSALDAESERVVQEALDKIMI-N-RTTVIVAH 456 (478)
Q Consensus 412 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~-~t~i~itH 456 (478)
++.+++|+++||.-..+..|..+ ....+.++.+.+ + +|++++|+
T Consensus 167 ~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 167 RSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 99999999888774334445443 334455555433 3 56666654
No 178
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.61 E-value=3.5e-08 Score=100.01 Aligned_cols=141 Identities=11% Similarity=0.236 Sum_probs=83.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC-----------CCccEEEECCeecCCCCHHHhhcceEEEecCCCC----CcccHHH
Q 048556 291 TAALVGQSGSGKSTVISLIERFYD-----------PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVL----FTSSIKD 355 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~-----------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l----f~~ti~e 355 (478)
.++|+|++|||||||++.|.|... |..|.|.++|.++.- ....|++.+.|.- |..|. +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l------~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML------VDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE------EECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE------EeCCCchhcCCHHHHHHHHHHH-H
Confidence 399999999999999999999875 677999999976532 2345666554431 22222 2
Q ss_pred HHh------cCCCCCCHHH--HHHHHHHhcHHHHHHhC--CCCccccccCCCCCCChHHHHHHHHH----HHH-cCCCCE
Q 048556 356 NIN------YGKDGASIAE--IMAAAELANAAKFIDSL--PQGLDTMVGEHGTQLSGGQKQRIAIA----RAI-LKDPRI 420 (478)
Q Consensus 356 Nl~------~~~~~~~~~~--~~~a~~~~~~~~~i~~l--p~g~~t~~~~~g~~LSgGq~Qrl~lA----Ral-l~~~~i 420 (478)
.+. +.. +.++.. ..+..+ ...+.+..+ ++----.++.+...+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~Vv-D~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 254 EAKYSDALILVI-DSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp GGGGSSEEEEEE-ETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHhCCEEEEEE-ECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE
Confidence 222 111 111111 111111 112233322 11111223455566788888988877 666 445554
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHh
Q 048556 421 LLLDEATSALDAESERVVQEALDKI 445 (478)
Q Consensus 421 lilDEpts~LD~~~~~~i~~~l~~~ 445 (478)
+|+|++|......+++.|.+.
T Consensus 331 ----~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ----IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ----EECBTTTTBSHHHHHHHHHHH
T ss_pred ----EEEECCCCcCHHHHHHHHHHH
Confidence 899999999999999888764
No 179
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.59 E-value=1.8e-09 Score=99.89 Aligned_cols=52 Identities=29% Similarity=0.426 Sum_probs=45.6
Q ss_pred CcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE--EECCeecC
Q 048556 276 EQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV--LIDGVNLK 328 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i--~~~g~~~~ 328 (478)
..+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ ++||.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 356788889999999999999999999999999999998 67988 88876653
No 180
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.58 E-value=2e-08 Score=100.03 Aligned_cols=80 Identities=20% Similarity=0.212 Sum_probs=62.3
Q ss_pred cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH----HHh-----hcceEEE-ecCCCC
Q 048556 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL----KWI-----RGKIGLV-SQEPVL 348 (478)
Q Consensus 279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~-----r~~i~~v-~Q~~~l 348 (478)
++++||++++|++++++|++|+||||++..|++.+.+..|+|.+.+.|+..... ..+ +..+.++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 467899999999999999999999999999999999999999998888755331 234 5678999 666554
Q ss_pred Ccc-cHHHHHh
Q 048556 349 FTS-SIKDNIN 358 (478)
Q Consensus 349 f~~-ti~eNl~ 358 (478)
.+. ++++++.
T Consensus 175 ~p~~~~~~~l~ 185 (320)
T 1zu4_A 175 DPASVVFDAIK 185 (320)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 443 4555554
No 181
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.57 E-value=1.4e-08 Score=93.60 Aligned_cols=62 Identities=18% Similarity=0.107 Sum_probs=40.3
Q ss_pred eeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCC
Q 048556 284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVL 348 (478)
Q Consensus 284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 348 (478)
+++++|++++|+|||||||||++++|.+++.|+.| +.+ +......... .+..++|++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~~~-~~~~~~~~~~~~~~ 62 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMREG-EVDGVDYFFKTRDA 62 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCCTT-CCBTTTBEECCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCCCC-ccCCCceEEcCHHH
Confidence 47899999999999999999999999999977655 212 1222111111 12347788877543
No 182
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.57 E-value=1.1e-08 Score=95.19 Aligned_cols=67 Identities=22% Similarity=0.164 Sum_probs=44.8
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCC-CccEEE----------ECCeecCCCCHHHhhcceEEEecCCCCCcccHHH
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVL----------IDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKD 355 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~~G~i~----------~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 355 (478)
++|++++|+||||||||||++.|++.++| ..+.+. .+|.+....+.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999976 333333 234444444555554432 4455555555555
Q ss_pred H
Q 048556 356 N 356 (478)
Q Consensus 356 N 356 (478)
|
T Consensus 83 ~ 83 (208)
T 3tau_A 83 N 83 (208)
T ss_dssp E
T ss_pred c
Confidence 5
No 183
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.51 E-value=2.4e-09 Score=112.64 Aligned_cols=139 Identities=20% Similarity=0.247 Sum_probs=94.3
Q ss_pred EEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEE
Q 048556 262 ELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGL 341 (478)
Q Consensus 262 ~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 341 (478)
+++++...|.+ ...++++++++++| +.|+||+|+|||||++++++... .|.+.++|.++.+.......+++..
T Consensus 42 ~l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 44555544532 35899999999999 99999999999999999999875 6889999988765444444556777
Q ss_pred EecCCC-CCcc-cHHHHHh-cCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048556 342 VSQEPV-LFTS-SIKDNIN-YGKDGA-----SIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARA 413 (478)
Q Consensus 342 v~Q~~~-lf~~-ti~eNl~-~~~~~~-----~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARa 413 (478)
++|... ..+. .+.|++. ++.... ..++..+.+ ...+. .|||||+|+..+++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEE
Confidence 888764 3333 5567773 332111 122222211 12221 367888888888889
Q ss_pred HcCCCCEEEEeCCCCC
Q 048556 414 ILKDPRILLLDEATSA 429 (478)
Q Consensus 414 ll~~~~ililDEpts~ 429 (478)
..++|++ ||||.-.
T Consensus 175 atn~p~~--LD~aLlr 188 (499)
T 2dhr_A 175 ATNRPDI--LDPALLR 188 (499)
T ss_dssp CCSCGGG--SCTTTSS
T ss_pred ecCChhh--cCccccc
Confidence 9888887 8888753
No 184
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.50 E-value=5.1e-09 Score=111.51 Aligned_cols=71 Identities=27% Similarity=0.305 Sum_probs=53.0
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc-EEE-ECCeecCC-------CCHH---HhhcceEEEecCCCCCccc
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVL-IDGVNLKE-------FQLK---WIRGKIGLVSQEPVLFTSS 352 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~-~~g~~~~~-------~~~~---~~r~~i~~v~Q~~~lf~~t 352 (478)
.+++|++++|+|+||||||||+++|++.+.|++| ++. +||.++.+ ++.+ ..++.+++++|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 6789999999999999999999999999999887 784 89976532 2222 2345678888762 3
Q ss_pred HHHHHhcC
Q 048556 353 IKDNINYG 360 (478)
Q Consensus 353 i~eNl~~~ 360 (478)
..+|+.+.
T Consensus 440 ~~~~ivi~ 447 (552)
T 3cr8_A 440 KNRGIAIC 447 (552)
T ss_dssp HTTCEEEE
T ss_pred hcCCEEEE
Confidence 44555443
No 185
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=4.8e-08 Score=90.12 Aligned_cols=45 Identities=18% Similarity=0.082 Sum_probs=25.1
Q ss_pred ECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 269 SYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 269 ~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.|+..+..++++|+||++++|+.++|+||+||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344444457999999999999999999999999999999999876
No 186
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.40 E-value=5.8e-08 Score=87.92 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=47.2
Q ss_pred ccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCe--ecCCCCHH----HhhcceEEEecCC
Q 048556 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGV--NLKEFQLK----WIRGKIGLVSQEP 346 (478)
Q Consensus 280 ~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~--~~~~~~~~----~~r~~i~~v~Q~~ 346 (478)
+++++++.+| +++|+||||||||||+++|.++..+..|...-.+. ++-..... ..+..|.+++|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6789999999 99999999999999999999998877665432221 11111100 1345688999876
No 187
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.38 E-value=1.1e-06 Score=88.56 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=49.7
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCEEEEe-CCCCCCCHHHHHHHHHHHHHhcCCCeEEEEe--cCch
Q 048556 397 GTQLSGGQKQRIAIARAILKDPRILLLD-EATSALDAESERVVQEALDKIMINRTTVIVA--HRLS 459 (478)
Q Consensus 397 g~~LSgGq~Qrl~lARall~~~~ililD-Epts~LD~~~~~~i~~~l~~~~~~~t~i~it--H~~~ 459 (478)
...+|+|++|++. +.+...++-++++| ++++++|......+++.+.....++.+|+|. |++.
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 4568999999886 55555677788999 9999999998888888887765577888888 7764
No 188
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.37 E-value=5.2e-07 Score=100.10 Aligned_cols=67 Identities=15% Similarity=0.128 Sum_probs=54.1
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhcCC-CeEEE-EecCchhhhh
Q 048556 397 GTQLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESERVVQEALDKIMIN-RTTVI-VAHRLSTVRN 463 (478)
Q Consensus 397 g~~LSgGq~Qrl~lARall~~~~ililDEpts-~LD~~~~~~i~~~l~~~~~~-~t~i~-itH~~~~~~~ 463 (478)
..-+|+|+.+|..++++++.+++++|+|||.. ++|.+....+++.+....++ +++++ +||+.+.+..
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 34678999999999999999999999999997 99988777777777665544 56666 4898776544
No 189
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.29 E-value=9.7e-08 Score=96.22 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=49.9
Q ss_pred CccEEEEeEEEECCCCCCCcccc--------------cceeeecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 258 RGDIELKDIYFSYPSRPGEQIFN--------------GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 258 ~~~i~~~~v~~~y~~~~~~~~l~--------------~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
.+.++|+|++|.||. ++..|+ |+++.+.+|++++|+||+|+|||||++.|++...
T Consensus 131 ~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 467999999999985 467888 8999999999999999999999999999999863
No 190
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.29 E-value=1.8e-06 Score=86.93 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=42.8
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE-EECCeecCCCCHHHhhcceEEEecC
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-LIDGVNLKEFQLKWIRGKIGLVSQE 345 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~ 345 (478)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++....+ ..+.+++++.+|+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~ 115 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKS 115 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGG
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhh
Confidence 488999999999999999999999999988777765 555543222 1234456665554
No 191
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.29 E-value=3.9e-07 Score=84.19 Aligned_cols=70 Identities=17% Similarity=0.150 Sum_probs=43.9
Q ss_pred CChHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhh---hhcCEEEEEeC
Q 048556 400 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTV---RNADLIAVIHQ 472 (478)
Q Consensus 400 LSgGq~Qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~---~~~d~i~vl~~ 472 (478)
.+.|+.+|..+++.++.+|+.+-.+ ++.++|...+.+.+.+... .+.++|+-+|.+... +.||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678999999999998888644333 3345666666666655443 345788888877553 55899999864
No 192
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.25 E-value=1.8e-06 Score=86.22 Aligned_cols=108 Identities=12% Similarity=0.183 Sum_probs=66.2
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcccHHHH
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTSSIKDN 356 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 356 (478)
+.|+.+.--+++|+.+.|.|++|+|||||+.-++.......+.+ .|++=
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~V-------------------l~fSl------------ 82 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGV-------------------AVFSL------------ 82 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEE-------------------EEEES------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-------------------EEEeC------------
Confidence 35666655799999999999999999999988876654332333 33221
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCEEEEeCCCCCCC
Q 048556 357 INYGKDGASIAEIMAAAELANAAKFIDSLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 431 (478)
Q Consensus 357 l~~~~~~~~~~~~~~a~~~~~~~~~i~~lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~ililDEpts~LD 431 (478)
..+.+++...+-.. .... .++.... ..||.++.||++.|...+.+++++|.|+|...+|
T Consensus 83 ------Ems~~ql~~Rlls~-----~~~v--~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 ------EMSAEQLALRALSD-----LTSI--NMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ------SSCHHHHHHHHHHH-----HHCC--CHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ------CCCHHHHHHHHHHH-----hhCC--CHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 12333332221100 0000 0111110 2588888888888888888888888888865543
No 193
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.22 E-value=1.8e-07 Score=84.11 Aligned_cols=38 Identities=34% Similarity=0.403 Sum_probs=33.6
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK 328 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~ 328 (478)
.+|++++|+|||||||||+++.|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 568999999999999999999999875 78888887654
No 194
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.21 E-value=2.8e-07 Score=85.19 Aligned_cols=48 Identities=17% Similarity=0.116 Sum_probs=41.2
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCH
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQL 332 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~ 332 (478)
..++|++++|+|+|||||||+++.|.+.+++..|.+.+.+.|....+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 467899999999999999999999999999888999887776554443
No 195
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.21 E-value=3.4e-06 Score=86.82 Aligned_cols=163 Identities=18% Similarity=0.173 Sum_probs=94.0
Q ss_pred EEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHH-Hhhcce
Q 048556 261 IELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLK-WIRGKI 339 (478)
Q Consensus 261 i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~-~~r~~i 339 (478)
+..+++++.|.+. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|...-... .++..
T Consensus 77 ~v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~- 148 (425)
T 2ffh_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL- 148 (425)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-
Confidence 3445666677532 1 678888 8999999999999999999999999999989999988776543221 12110
Q ss_pred EEEecCCCCCcccHHHHHhcC--CCCCCHHHHHHHHHHhcHHHHHHhC-CCCccccccCCCCCCC---hHHHHHHHHHHH
Q 048556 340 GLVSQEPVLFTSSIKDNINYG--KDGASIAEIMAAAELANAAKFIDSL-PQGLDTMVGEHGTQLS---GGQKQRIAIARA 413 (478)
Q Consensus 340 ~~v~Q~~~lf~~ti~eNl~~~--~~~~~~~~~~~a~~~~~~~~~i~~l-p~g~~t~~~~~g~~LS---gGq~Qrl~lARa 413 (478)
.-..|+.+. .+..++.++. .+.++.+ .+++|..+=+.+..++ .-..+...++++
T Consensus 149 ------------~~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~ 208 (425)
T 2ffh_A 149 ------------GEKVGVPVLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (425)
T ss_dssp ------------HHHHTCCEEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred ------------cccCCccEEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhc
Confidence 001122111 1112333432 1222222 2467765533333332 345667778888
Q ss_pred HcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEec
Q 048556 414 ILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAH 456 (478)
Q Consensus 414 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH 456 (478)
+..++-++++| ++++.|.... .+.+... -+.+-+++|+
T Consensus 209 ~~pd~vlLVvD-a~tgq~av~~---a~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 209 LGPDEVLLVLD-AMTGQEALSV---ARAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HCCSEEEEEEE-GGGTTHHHHH---HHHHHHH-TCCCEEEEES
T ss_pred cCCceEEEEEe-ccchHHHHHH---HHHHHhc-CCceEEEEeC
Confidence 86666677788 4556554432 1222221 2346667775
No 196
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.19 E-value=1.7e-06 Score=89.19 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN 326 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 326 (478)
++.+++++||+||||||++..|++.+.+..+++.+-+.|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 578999999999999999999999999887788775554
No 197
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.18 E-value=7.6e-06 Score=82.47 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=33.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc----CCCeEEEEecCchhh
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIM----INRTTVIVAHRLSTV 461 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~----~~~t~i~itH~~~~~ 461 (478)
.+|.++++||+... |......+.+.+.+.. .+.++|++||+....
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45889999999876 8877777777765433 356788899988543
No 198
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.18 E-value=4.2e-07 Score=85.82 Aligned_cols=65 Identities=20% Similarity=0.183 Sum_probs=49.6
Q ss_pred ceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCC------CHHH----hhcceEEEecCCCCCc
Q 048556 282 FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEF------QLKW----IRGKIGLVSQEPVLFT 350 (478)
Q Consensus 282 is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~------~~~~----~r~~i~~v~Q~~~lf~ 350 (478)
-+.+.++|++++|.|++||||||++++|.++ .|+|.+++.|...+ ...+ .++.+++++|.+.++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 4456689999999999999999999999998 68899999876422 1111 2456788888766554
No 199
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.12 E-value=1e-06 Score=87.70 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=26.1
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
-+++|+++.|.||+|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58999999999999999999998887653
No 200
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.11 E-value=5.1e-07 Score=89.68 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=37.5
Q ss_pred CcccccceeeecCCC------EEEEEcCCCCChHHHHHHHhccCC--CCccEE
Q 048556 276 EQIFNGFSLSIPSGT------TAALVGQSGSGKSTVISLIERFYD--PQAGEV 320 (478)
Q Consensus 276 ~~~l~~is~~i~~G~------~~~ivG~sGsGKSTL~~ll~g~~~--~~~G~i 320 (478)
.+.|++++..+.+++ ++||+||||||||||++.|.+++. |++|++
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 357888888887776 999999999999999999999987 344543
No 201
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.98 E-value=1.5e-06 Score=86.80 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=38.4
Q ss_pred CcccccceeeecCCCE--EEEEcCCCCChHHHHHHHhccCCCCcc
Q 048556 276 EQIFNGFSLSIPSGTT--AALVGQSGSGKSTVISLIERFYDPQAG 318 (478)
Q Consensus 276 ~~~l~~is~~i~~G~~--~~ivG~sGsGKSTL~~ll~g~~~~~~G 318 (478)
..+++.++..+++|+. +.+.||+|+||||+++.+++...+..+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 3689999999999998 999999999999999999998876554
No 202
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.94 E-value=4.3e-05 Score=74.40 Aligned_cols=69 Identities=19% Similarity=0.191 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHcCCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHhcC-----CCeEEEEecCchh-----h
Q 048556 402 GGQKQRIAIARAILKDPRILLLDEATSALDAE----------SERVVQEALDKIMI-----NRTTVIVAHRLST-----V 461 (478)
Q Consensus 402 gGq~Qrl~lARall~~~~ililDEpts~LD~~----------~~~~i~~~l~~~~~-----~~t~i~itH~~~~-----~ 461 (478)
+++++|-.++++...+|.++++||+.+-.+.. ....+...+..... +..+|.+|+++.. .
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 56777778888888899999999998776532 22334444444321 2346677887643 2
Q ss_pred hhcCEEEEE
Q 048556 462 RNADLIAVI 470 (478)
Q Consensus 462 ~~~d~i~vl 470 (478)
+.+++++.+
T Consensus 178 ~R~~~~i~~ 186 (297)
T 3b9p_A 178 RRFTKRVYV 186 (297)
T ss_dssp HHCCEEEEC
T ss_pred hhCCeEEEe
Confidence 346665544
No 203
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.93 E-value=4.8e-06 Score=83.50 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=26.0
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999988875
No 204
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.92 E-value=1.2e-05 Score=83.35 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=33.9
Q ss_pred CCCEEEEeCCCCCCCH-HHHHHHHHHHHHhc-CCCeEEEEecCc
Q 048556 417 DPRILLLDEATSALDA-ESERVVQEALDKIM-INRTTVIVAHRL 458 (478)
Q Consensus 417 ~~~ililDEpts~LD~-~~~~~i~~~l~~~~-~~~t~i~itH~~ 458 (478)
+|++|++||+..-.+. .+...++..+.... .++.+|++||+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 8999999999887764 57778888887654 467888999984
No 205
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.90 E-value=2.5e-06 Score=90.99 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=48.6
Q ss_pred EEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEE
Q 048556 263 LKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLV 342 (478)
Q Consensus 263 ~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 342 (478)
++++...|. +..+++++++++ +|+.++|+||||+|||||++.|++...+..|.|.++|......-....++.+++.
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence 344544552 135788889888 8999999999999999999999999999899998887543211112223456665
Q ss_pred ecC
Q 048556 343 SQE 345 (478)
Q Consensus 343 ~Q~ 345 (478)
+|.
T Consensus 162 ~~~ 164 (543)
T 3m6a_A 162 PGR 164 (543)
T ss_dssp --C
T ss_pred chH
Confidence 553
No 206
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.87 E-value=2.8e-05 Score=73.35 Aligned_cols=29 Identities=31% Similarity=0.320 Sum_probs=24.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCCccE
Q 048556 291 TAALVGQSGSGKSTVISLIERFYDPQAGE 319 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 319 (478)
.++|+|++|+|||||++.|+|...+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999987665553
No 207
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.87 E-value=9e-06 Score=84.28 Aligned_cols=70 Identities=26% Similarity=0.320 Sum_probs=45.0
Q ss_pred CEEEEEcCCCCChHHHHHHHhccCC------------CCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHH
Q 048556 290 TTAALVGQSGSGKSTVISLIERFYD------------PQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDN 356 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eN 356 (478)
-+++|+|+||+|||||++.|+|... |.+|.+.++|.++.-+|....++...+.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3799999999999999999999853 6789999999987666655556666666676666653 45556
Q ss_pred Hhc
Q 048556 357 INY 359 (478)
Q Consensus 357 l~~ 359 (478)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 544
No 208
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.84 E-value=2.5e-06 Score=95.09 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=29.2
Q ss_pred eeecCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556 284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
+.+++|+.+.|+||||||||||+++|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 47899999999999999999999999998754
No 209
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.82 E-value=3.8e-05 Score=76.01 Aligned_cols=36 Identities=6% Similarity=0.074 Sum_probs=30.8
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+.|+++.--+++|+.+.|.|++|+|||||+.-++.-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 457777666999999999999999999998887754
No 210
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.82 E-value=5.3e-06 Score=83.28 Aligned_cols=30 Identities=17% Similarity=0.344 Sum_probs=26.5
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCCC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQ 316 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~ 316 (478)
+++..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 567899999999999999999999987654
No 211
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.80 E-value=5.5e-06 Score=75.89 Aligned_cols=58 Identities=19% Similarity=0.415 Sum_probs=41.3
Q ss_pred EEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhcc--------CCCCccEEEECCeec
Q 048556 267 YFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERF--------YDPQAGEVLIDGVNL 327 (478)
Q Consensus 267 ~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~--------~~~~~G~i~~~g~~~ 327 (478)
+|+|++- .++++++|++.+++ +++++|++|+|||||++.+.+- ..++.+.+.++|.++
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 4567643 46899999998887 6899999999999999999872 234567787877554
No 212
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.80 E-value=3.7e-06 Score=75.74 Aligned_cols=40 Identities=38% Similarity=0.487 Sum_probs=32.9
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCCCcc--EEEECCeec
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGVNL 327 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G--~i~~~g~~~ 327 (478)
++|++++|+|++||||||+++.|.+.+++ .| .+.+|+..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998876 56 666665444
No 213
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.79 E-value=3.4e-06 Score=84.57 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=45.7
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeec
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL 327 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 327 (478)
.+++++++.+++|.+++|+|++|+|||||++.|++.+.+..|++.+-+.|.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 578899999999999999999999999999999999988888887766554
No 214
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.78 E-value=4e-05 Score=75.78 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCCCC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYDPQ 316 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~ 316 (478)
++..+.|.||+|+|||||++.+++...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45689999999999999999999876543
No 215
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.77 E-value=9.6e-06 Score=72.28 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 324 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 324 (478)
.|+.++|+|||||||||+++.|++.+.+ ..+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 45554
No 216
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.76 E-value=3.1e-05 Score=73.04 Aligned_cols=140 Identities=14% Similarity=0.163 Sum_probs=76.5
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCCCCHHHhhcceEEEecCCCCCcc-cHHHHHhcCCCC
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKEFQLKWIRGKIGLVSQEPVLFTS-SIKDNINYGKDG 363 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNl~~~~~~ 363 (478)
.+.+|+.++++||+||||||++.+.........|. ...+.++.+.|..... ++.+|+......
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 34679999999999999999888764322111111 1345667777765443 677776532111
Q ss_pred CCHHHHHHHHHHhcHHHHHHhCCCCcccc----ccCC---CCCCChHHHHHHHHHHHHcCCCCEEEEeCCCC-CCCHHHH
Q 048556 364 ASIAEIMAAAELANAAKFIDSLPQGLDTM----VGEH---GTQLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESE 435 (478)
Q Consensus 364 ~~~~~~~~a~~~~~~~~~i~~lp~g~~t~----~~~~---g~~LSgGq~Qrl~lARall~~~~ililDEpts-~LD~~~~ 435 (478)
.- ....|+... .... ..--+.|+-.+. .+.-+++-+++|+||+-. ++|....
T Consensus 136 ~~------------------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 136 EP------------------GKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp CT------------------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHH
T ss_pred cc------------------CceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHH
Confidence 00 000011111 1000 011234655554 344688999999999976 5777766
Q ss_pred HHHHHHHHHhcCC-CeEEEE-ecCchh
Q 048556 436 RVVQEALDKIMIN-RTTVIV-AHRLST 460 (478)
Q Consensus 436 ~~i~~~l~~~~~~-~t~i~i-tH~~~~ 460 (478)
....+.+....++ +++++. |...+.
T Consensus 196 ~~~l~~i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 196 LVVLRDVVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHHHHCTTSEEEEEECSSCCHH
T ss_pred HHHHHHHHhhCCCCeEEEEecCCCHHH
Confidence 5455555554444 444444 444443
No 217
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.75 E-value=7.8e-06 Score=77.19 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=31.8
Q ss_pred cccceeeec---CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 279 FNGFSLSIP---SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 279 l~~is~~i~---~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
|.+.|+.++ +|..++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 555666655 8999999999999999999999999987 666654
No 218
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.73 E-value=0.00015 Score=68.96 Aligned_cols=45 Identities=27% Similarity=0.395 Sum_probs=29.2
Q ss_pred ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee
Q 048556 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN 326 (478)
Q Consensus 278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 326 (478)
.++++++..++| +.|+||+|+|||||++.+++..... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 345555555555 8999999999999999999876432 24454433
No 219
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.69 E-value=5.6e-06 Score=76.82 Aligned_cols=43 Identities=35% Similarity=0.321 Sum_probs=37.9
Q ss_pred eeecCCCEEEEEcCCCCChHHHHHHHhccCCCCcc--EEEECCee
Q 048556 284 LSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGVN 326 (478)
Q Consensus 284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G--~i~~~g~~ 326 (478)
+.+++|..++|+|++||||||+.+.|.+.+.|..| .+.++|.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 55789999999999999999999999999988888 88887543
No 220
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.68 E-value=5.2e-08 Score=94.16 Aligned_cols=74 Identities=15% Similarity=0.101 Sum_probs=64.5
Q ss_pred CCCCccccccCCCCCCChHHHHHHHHHHHHcCCCCE--EEEeCCCCCCCHHH---------HHHHHHHHHHhcCCCeEEE
Q 048556 385 LPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRI--LLLDEATSALDAES---------ERVVQEALDKIMINRTTVI 453 (478)
Q Consensus 385 lp~g~~t~~~~~g~~LSgGq~Qrl~lARall~~~~i--lilDEpts~LD~~~---------~~~i~~~l~~~~~~~t~i~ 453 (478)
+|+++++.+++++..+|+| ||++++|+++.+|++ +|+||+|+++|... +..+.+.++...+++|.+.
T Consensus 158 l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~ 235 (261)
T 2eyu_A 158 LSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLE 235 (261)
T ss_dssp HHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHH
T ss_pred HHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHH
Confidence 4568999999999999999 999999999999999 99999999999873 3456777777788999999
Q ss_pred EecCchh
Q 048556 454 VAHRLST 460 (478)
Q Consensus 454 itH~~~~ 460 (478)
++||++.
T Consensus 236 ~a~r~~~ 242 (261)
T 2eyu_A 236 DAMEASP 242 (261)
T ss_dssp HHHHHCS
T ss_pred HHHHHhC
Confidence 9999763
No 221
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.65 E-value=1.1e-05 Score=81.19 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=36.5
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK 328 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~ 328 (478)
+++.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 457899999999999999999999999888898888776654
No 222
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.65 E-value=3.3e-05 Score=75.96 Aligned_cols=141 Identities=17% Similarity=0.165 Sum_probs=73.9
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE-CCeecCCCCHHHhhcceEEEecCCCC--CcccHHHHHhcCCCCC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-DGVNLKEFQLKWIRGKIGLVSQEPVL--FTSSIKDNINYGKDGA 364 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~l--f~~ti~eNl~~~~~~~ 364 (478)
++.+++|+|++|+|||||++.|.|.. +.+ .+.+-. ..++..++++++..- |-+| |..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~~iDT---------pG~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAIYVDT---------PGL 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEEEESS---------SSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEEEEEC---------cCC
Confidence 34489999999999999999999863 111 111111 123446777776531 2122 222
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCC---ccc--cccCCCCCCChHHHHHHHHHHHHc--CCCCEEEEeCCCCCCCHHH-HH
Q 048556 365 SIAEIMAAAELANAAKFIDSLPQG---LDT--MVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSALDAES-ER 436 (478)
Q Consensus 365 ~~~~~~~a~~~~~~~~~i~~lp~g---~~t--~~~~~g~~LSgGq~Qrl~lARall--~~~~ililDEpts~LD~~~-~~ 436 (478)
.. +-...... ++....... .|- .+-+... +|+|++ .+++++. ..|.++++ +-+|... ..
T Consensus 67 ~~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~ 133 (301)
T 1ega_A 67 HM-EEKRAINR----LMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKA 133 (301)
T ss_dssp CH-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHH
T ss_pred Cc-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHH
Confidence 10 11111110 111111111 222 1122223 999886 5566666 67888888 6777765 55
Q ss_pred HHHHHHHHhcC--C--CeEEEEecCchhh
Q 048556 437 VVQEALDKIMI--N--RTTVIVAHRLSTV 461 (478)
Q Consensus 437 ~i~~~l~~~~~--~--~t~i~itH~~~~~ 461 (478)
.+.+.+.++.+ + .++.+.+|.-.-+
T Consensus 134 ~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 134 DLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp HHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 56666665543 2 2455667765443
No 223
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.65 E-value=8.2e-06 Score=75.25 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=26.5
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
...+|..++|+||||||||||.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999998764
No 224
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.64 E-value=5.7e-05 Score=69.12 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhccCCCC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFYDPQ 316 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~ 316 (478)
..+.|.||+|+|||||++.++......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999876543
No 225
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.60 E-value=0.0001 Score=72.27 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=28.2
Q ss_pred eeeecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 283 SLSIPSGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 283 s~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
++.++++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34578899999999999999999999998763
No 226
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.56 E-value=3.4e-05 Score=69.95 Aligned_cols=50 Identities=18% Similarity=0.473 Sum_probs=29.6
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhc----c----CCCCccEEEECCeec
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER----F----YDPQAGEVLIDGVNL 327 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g----~----~~~~~G~i~~~g~~~ 327 (478)
.+++++|++.++. +++++|++|+|||||++.+.+ . ..++.+.+.++|..+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 3788999988776 889999999999999999997 2 233456777777544
No 227
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.54 E-value=3.3e-05 Score=72.02 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
++..+.|.||+|+|||||++.++.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999877653
No 228
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.54 E-value=5.6e-06 Score=78.37 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=43.4
Q ss_pred CCCEEEEEcCCCCChHHHHHHHh---ccCCCCccEEE--------ECCeecCCCC-HHHhhcceEEEe------cCCCCC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIE---RFYDPQAGEVL--------IDGVNLKEFQ-LKWIRGKIGLVS------QEPVLF 349 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~---g~~~~~~G~i~--------~~g~~~~~~~-~~~~r~~i~~v~------Q~~~lf 349 (478)
+.-+++|.||+||||||+.+.|+ |+...+.|.++ -+|.+..+.. ..++.+.+.+.+ |..+++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 34589999999999999999998 55445566652 3455554432 334455555555 233344
Q ss_pred cccHHHHH
Q 048556 350 TSSIKDNI 357 (478)
Q Consensus 350 ~~ti~eNl 357 (478)
...+.++|
T Consensus 88 g~~v~~~i 95 (233)
T 3r20_A 88 GEDVSSEI 95 (233)
T ss_dssp TEECTTGG
T ss_pred Ceehhhhh
Confidence 44555544
No 229
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=2.3e-05 Score=77.93 Aligned_cols=43 Identities=12% Similarity=0.319 Sum_probs=33.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchh
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLST 460 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 460 (478)
+++++++|| ...+++.....+.+.+.+...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 6788888888888888776555567777777653
No 230
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.51 E-value=0.00023 Score=68.59 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=25.0
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 286 IPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
++++..+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4677889999999999999999998865
No 231
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.51 E-value=4.3e-05 Score=68.16 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=23.5
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
++|.+++|+|++|+|||||++.+.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 232
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.49 E-value=0.00019 Score=70.03 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=27.2
Q ss_pred CEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556 290 TTAALVGQSGSGKSTVISLIERFYDPQAGEV 320 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 320 (478)
..+.|+||+|+||||+++.+++...+.+|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999987766643
No 233
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.46 E-value=5.6e-05 Score=68.39 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=26.8
Q ss_pred cceeeecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999999999999876
No 234
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.45 E-value=6.6e-05 Score=65.83 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=25.1
Q ss_pred ccceeeecCCCEEEEEcCCCCChHHHHHHHhc
Q 048556 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 280 ~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g 311 (478)
++..+++.+| ..+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455566655 899999999999999999873
No 235
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.45 E-value=2.6e-05 Score=76.56 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=49.2
Q ss_pred EEEeEEEECCCCCCCccccc-ceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecCC
Q 048556 262 ELKDIYFSYPSRPGEQIFNG-FSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKE 329 (478)
Q Consensus 262 ~~~~v~~~y~~~~~~~~l~~-is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 329 (478)
..++++..|.+. . ++ ++++.+ |++++++|++|+||||++..|++.+.+..|++.+.+.|...
T Consensus 76 ~~~~l~~~~~~~---~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 76 VYDELSNLFGGD---K--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHHHTTCS---C--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHHHhccc---c--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 345555566432 1 46 888877 99999999999999999999999999888899987777644
No 236
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.42 E-value=0.00046 Score=59.80 Aligned_cols=41 Identities=10% Similarity=0.022 Sum_probs=30.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCc
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRL 458 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~ 458 (478)
+..++++||.- .|++.....+.+.+.....+..+|.+|++.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 44689999984 678888888888885544455677777653
No 237
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.38 E-value=0.00022 Score=65.83 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=32.8
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchh
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLST 460 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 460 (478)
.+|.++++||+-. +|......+.+.+.+...+..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 4578999999866 7888777887777654445677888887654
No 238
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.33 E-value=6.4e-05 Score=67.93 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=32.0
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 321 (478)
..++|..++|+|++||||||+.+.|++.+.+..|.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 4467999999999999999999999999887766653
No 239
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.28 E-value=1.1e-05 Score=73.57 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
.++|+|++||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999984
No 240
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.28 E-value=0.00064 Score=68.29 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=29.6
Q ss_pred cccccceee---ecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 277 QIFNGFSLS---IPSGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 277 ~~l~~is~~---i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
+.|+.+ +. +++|+++.|.||+|||||||+..++....
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455554 33 88999999999999999999988776543
No 241
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.20 E-value=8.8e-05 Score=67.94 Aligned_cols=34 Identities=35% Similarity=0.440 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN 326 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 326 (478)
..+++|+|++||||||+.+.|.+.+ |...+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 5689999999999999999999876 444555433
No 242
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.20 E-value=0.00023 Score=62.74 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 048556 291 TAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
+++++|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998653
No 243
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.20 E-value=0.00018 Score=73.20 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=34.7
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhcc-----------CCCCccEEEECCe
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERF-----------YDPQAGEVLIDGV 325 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~-----------~~~~~G~i~~~g~ 325 (478)
.++.|..++|+|++|+|||||++.|.|. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5678899999999999999999999998 6788898887764
No 244
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.20 E-value=3.4e-05 Score=77.86 Aligned_cols=56 Identities=21% Similarity=0.251 Sum_probs=36.5
Q ss_pred CccEEEEeEEEECCCCCCCcccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 258 RGDIELKDIYFSYPSRPGEQIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 258 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
.+.+.++|++..|.. +.++++++|+| +|+|++|+|||||++.|.+...+..|.+..
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~ 70 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPG 70 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC--------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccC
Confidence 356889999888852 46889999877 999999999999999998876655555433
No 245
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.16 E-value=0.00012 Score=69.95 Aligned_cols=41 Identities=32% Similarity=0.470 Sum_probs=33.6
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeec
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNL 327 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 327 (478)
..+++..+.++|++||||||+.+.|.+.+. .|.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 566788999999999999999999998875 25677777554
No 246
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.14 E-value=0.00073 Score=67.53 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=29.7
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 324 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 324 (478)
.+|..+.|.||+|+||||+++.++.........+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 45678999999999999999999988764434444444
No 247
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.12 E-value=0.00019 Score=64.30 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 248
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.12 E-value=0.00014 Score=66.35 Aligned_cols=46 Identities=30% Similarity=0.504 Sum_probs=34.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccC-------------CCCccEEEECCeecCCCCHHHhhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERFY-------------DPQAGEVLIDGVNLKEFQLKWIRGK 338 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~-------------~~~~G~i~~~g~~~~~~~~~~~r~~ 338 (478)
.+.|+||||||||||++.|..-+ +|-.|++ ||++..-++.+++.+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~ 61 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSM 61 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHH
Confidence 37899999999999999986443 4456764 7888777776666543
No 249
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.11 E-value=0.0032 Score=64.83 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEE
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 322 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 322 (478)
++.+++++|++|+||||++.-|+..+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46799999999999999999999888754334443
No 250
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.08 E-value=0.00082 Score=69.55 Aligned_cols=39 Identities=10% Similarity=0.142 Sum_probs=32.1
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
+.|+.+.--+++|+.+.|.|++|+|||||+.-++.-...
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 456666655899999999999999999999888876543
No 251
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.07 E-value=0.00023 Score=64.16 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=30.3
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccCCCC---ccEEEECCee
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGVN 326 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~ 326 (478)
-..++|+|+||||||||++.|.+.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3689999999999999999999886543 3777777654
No 252
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.03 E-value=0.0011 Score=63.02 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 048556 291 TAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
.++|+|++|+|||||++.|.|--.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 689999999999999999998643
No 253
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.01 E-value=0.00026 Score=64.70 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 048556 291 TAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g 311 (478)
+++|+|++||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 254
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.01 E-value=0.00036 Score=64.33 Aligned_cols=29 Identities=31% Similarity=0.547 Sum_probs=23.9
Q ss_pred cceeeecCCCEEEEEcCCCCChHHHHHHHh
Q 048556 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIE 310 (478)
Q Consensus 281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~ 310 (478)
+.++++.+| ..+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 455666654 89999999999999999885
No 255
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.99 E-value=0.00014 Score=72.70 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=33.9
Q ss_pred cccccceeeecCCCE--EEEEcCCCCChHHHHHHHhccC
Q 048556 277 QIFNGFSLSIPSGTT--AALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 277 ~~l~~is~~i~~G~~--~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.+++++++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999999 9999999999999999998864
No 256
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.99 E-value=0.0026 Score=63.71 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.1
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
++...+.|.||+|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 567789999999999999999998765
No 257
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.98 E-value=0.0057 Score=59.35 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
++..+.|.||+|+||||+++.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999998887763
No 258
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.97 E-value=0.00036 Score=62.55 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCC
Q 048556 291 TAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
+++|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999997543
No 259
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.94 E-value=0.0039 Score=58.85 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=22.9
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
++..-+.|.||+|+||||+++.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568899999999999999998754
No 260
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.93 E-value=0.00045 Score=61.53 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
.|..+.|+|+|||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
No 261
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.91 E-value=0.00033 Score=62.89 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.3
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.+|..++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999998543
No 262
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.91 E-value=0.0005 Score=68.75 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=25.3
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
..+..+.|.||+|+|||||++.+......
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56778999999999999999999987643
No 263
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.91 E-value=0.00049 Score=71.51 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHcCCCCEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhh
Q 048556 403 GQKQRIAIARAILKDPRILLLDEA-TSALDAESERVVQEALDKIMINRTTVIVAHRLSTV 461 (478)
Q Consensus 403 Gq~Qrl~lARall~~~~ililDEp-ts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 461 (478)
.|.+....++..+++++++|+... +.++.... ..+.+.+++ .++.+|++.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccch
Confidence 477777888888889988776544 44455544 456666654 467888888877654
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.81 E-value=0.00058 Score=60.19 Aligned_cols=25 Identities=28% Similarity=0.179 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhccCC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
..++|.|++||||||+.+.|...+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987653
No 265
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.81 E-value=0.00058 Score=69.33 Aligned_cols=45 Identities=16% Similarity=0.344 Sum_probs=36.2
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHhcC-CCeEEEEecCchhh
Q 048556 417 DPRILLLDEATSALD---AESERVVQEALDKIMI-NRTTVIVAHRLSTV 461 (478)
Q Consensus 417 ~~~ililDEpts~LD---~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~ 461 (478)
.|.++++||+=.-++ +.....+.+.+++.++ +..++++||+++.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~ 310 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDF 310 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHh
Confidence 578999999988885 5667777777777664 67899999999765
No 266
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.79 E-value=0.0021 Score=58.40 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=30.3
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLS 459 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 459 (478)
.++.++++||. ..++......+.+.+.....+..+|++|++..
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 36889999996 44677777777777766544556667777654
No 267
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.77 E-value=0.00051 Score=62.40 Aligned_cols=33 Identities=33% Similarity=0.472 Sum_probs=26.8
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN 326 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 326 (478)
..+++|+|++||||||+.+.|... |-..+|..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 357999999999999999999985 656665443
No 268
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.76 E-value=0.0013 Score=58.93 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=27.9
Q ss_pred EEEEEcCCCCChHHHHHHHh-cc----CCCCcc----EEEECCee
Q 048556 291 TAALVGQSGSGKSTVISLIE-RF----YDPQAG----EVLIDGVN 326 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~-g~----~~~~~G----~i~~~g~~ 326 (478)
+++|+|++|+|||||++.+. +. +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 68999999999999996554 44 567767 67777754
No 269
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.75 E-value=0.00072 Score=60.66 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
+|.++.|.|++||||||+.+.|...+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999987554
No 270
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.74 E-value=0.00074 Score=63.46 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=23.9
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
.-++|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999863
No 271
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.73 E-value=0.00057 Score=69.14 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCchhhhhcCEEEEE
Q 048556 407 RIAIARAILKDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLSTVRNADLIAVI 470 (478)
Q Consensus 407 rl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~vl 470 (478)
+.+|+++|..+|+++++|||| |+++.. ..++....+.+++.++|..+....+||++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHHHHHHHh
Confidence 469999999999999999999 766533 3444444578999999998766667776543
No 272
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.72 E-value=0.00079 Score=60.34 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998655
No 273
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.71 E-value=0.00023 Score=65.40 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=23.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCCC
Q 048556 291 TAALVGQSGSGKSTVISLIERFYDPQ 316 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~~~ 316 (478)
+++|+|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988654
No 274
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.70 E-value=0.011 Score=58.41 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=24.5
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 286 IPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++..-+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566789999999999999999999875
No 275
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.69 E-value=0.0079 Score=60.51 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=24.9
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
-+++|+.+.|.||+|+|||||+.-++.-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 47899999999999999999997776443
No 276
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.69 E-value=0.0016 Score=60.93 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=33.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecC-----------chhhhhcCEEEEE
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHR-----------LSTVRNADLIAVI 470 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~-----------~~~~~~~d~i~vl 470 (478)
+++++++||.-- ++.+.-+ ....+.. .+.+||++.|+ ...+..||+|.-|
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve-~l~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICE-VANILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHH-HHHHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred CCCEEEEecCcc-CcHHHHH-HHHHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 589999999964 6654222 2233333 37899999993 2334568998775
No 277
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.68 E-value=0.00066 Score=60.72 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=23.8
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++..+.|+|++||||||+.+.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998544
No 278
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.68 E-value=0.00094 Score=60.73 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+|..++|.|++||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999877
No 279
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.64 E-value=0.0069 Score=62.01 Aligned_cols=30 Identities=33% Similarity=0.284 Sum_probs=25.1
Q ss_pred eeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 284 LSIPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 284 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+.=++...+.++|++||||||+.+.|+.-+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 334567899999999999999999998644
No 280
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.64 E-value=0.00083 Score=60.46 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=23.9
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
++|..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998754
No 281
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.64 E-value=0.00086 Score=58.89 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHH
Q 048556 291 TAALVGQSGSGKSTVISLI 309 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll 309 (478)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 282
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.64 E-value=0.0017 Score=64.10 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=24.9
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
-+++|..+.|.||+|+|||||+..++.-
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5778889999999999999999998753
No 283
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.62 E-value=0.0035 Score=64.81 Aligned_cols=36 Identities=6% Similarity=0.072 Sum_probs=28.5
Q ss_pred ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.|+.+.--+++|+.+.|.|++|+|||||+.-++.-.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 455544358999999999999999999987766543
No 284
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.61 E-value=0.00079 Score=60.20 Aligned_cols=36 Identities=25% Similarity=0.439 Sum_probs=28.0
Q ss_pred CEEEEEcCCCCChHHHHHHHhcc----CCCCcc----EEEECCe
Q 048556 290 TTAALVGQSGSGKSTVISLIERF----YDPQAG----EVLIDGV 325 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~----~~~~~G----~i~~~g~ 325 (478)
-+++++|++|+|||||++.+.+- +.|+.| .+.+++.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~ 60 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGF 60 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCE
Confidence 47999999999999999999986 355566 4555543
No 285
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.60 E-value=0.0011 Score=64.57 Aligned_cols=36 Identities=36% Similarity=0.378 Sum_probs=28.7
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 324 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 324 (478)
.+|..+.|.|||||||||+.+.|..-++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3467899999999999999999987653 35667765
No 286
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.60 E-value=0.0042 Score=60.40 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=23.0
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
++...+.+.||+|+|||+|++.++...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344568889999999999999999876
No 287
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.58 E-value=0.006 Score=52.52 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=23.9
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
+.+.-+.|.||+|+|||++++.+.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 5567799999999999999999987643
No 288
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.57 E-value=0.0011 Score=59.68 Aligned_cols=27 Identities=33% Similarity=0.390 Sum_probs=24.2
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++.+++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
No 289
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.56 E-value=0.0016 Score=65.44 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCChHHHHHHHhc-----------cCCCCccEEEECC
Q 048556 289 GTTAALVGQSGSGKSTVISLIER-----------FYDPQAGEVLIDG 324 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g-----------~~~~~~G~i~~~g 324 (478)
|.+++|||++|+|||||++.|.+ -.+|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4467788888766
No 290
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.54 E-value=0.0012 Score=60.30 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=24.3
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
++|.+++|.|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999998754
No 291
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.50 E-value=0.0014 Score=60.09 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=24.5
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 286 IPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
-++|.+++|.|++||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999998654
No 292
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.50 E-value=0.0011 Score=61.21 Aligned_cols=24 Identities=42% Similarity=0.432 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhc
Q 048556 288 SGTTAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g 311 (478)
++-+++|+|++||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 293
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.47 E-value=0.00064 Score=61.52 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=25.5
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+.+++.+++|+|++||||||+.+.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45667899999999999999999998765
No 294
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.46 E-value=0.0022 Score=64.15 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.+..+.|.||+|+|||||++.++...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998765
No 295
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.44 E-value=0.0014 Score=64.37 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=35.5
Q ss_pred cccccceeeecCCCEEEEEcCCCCChHHHHHHHhc----cCCCCccEEEECC
Q 048556 277 QIFNGFSLSIPSGTTAALVGQSGSGKSTVISLIER----FYDPQAGEVLIDG 324 (478)
Q Consensus 277 ~~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g----~~~~~~G~i~~~g 324 (478)
..+++..+.+ .|.-++|.|+||+||||++..|.+ +...+...|...+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 3566666777 789999999999999999999987 5554555555433
No 296
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.43 E-value=0.0014 Score=59.86 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
+|.+++|.|++||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999987654
No 297
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.41 E-value=0.0012 Score=58.75 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998765
No 298
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.37 E-value=0.0016 Score=57.64 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChHHHHHHHhc
Q 048556 290 TTAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g 311 (478)
..+.|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999987
No 299
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.32 E-value=0.00014 Score=73.35 Aligned_cols=71 Identities=14% Similarity=0.024 Sum_probs=50.4
Q ss_pred CCChHHHHHHHHHHHHc-CCCCEEEEeC---CC------CCCCHHHHHHHHHHHHHhcC--CCeEEEEecCchhhhhcCE
Q 048556 399 QLSGGQKQRIAIARAIL-KDPRILLLDE---AT------SALDAESERVVQEALDKIMI--NRTTVIVAHRLSTVRNADL 466 (478)
Q Consensus 399 ~LSgGq~Qrl~lARall-~~~~ililDE---pt------s~LD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~~d~ 466 (478)
.+|+|++|+..+++++. .+|++++||| |+ +++|+..+..+.+.++++.+ +.++++++|.-...+.+|+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 45677788888888875 5999999999 65 58999999999999977643 7899999986433333554
Q ss_pred EEE
Q 048556 467 IAV 469 (478)
Q Consensus 467 i~v 469 (478)
+.+
T Consensus 338 i~~ 340 (365)
T 1lw7_A 338 KAV 340 (365)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 300
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.32 E-value=0.0016 Score=62.02 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++|+||+|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998764
No 301
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.32 E-value=0.0065 Score=60.44 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=30.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLS 459 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 459 (478)
++.++++||+- .++......+.+.+.+...+..+|++|++..
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 57899999964 4677777778777765444556677787664
No 302
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.31 E-value=0.014 Score=58.28 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=23.6
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++.-+.|.||+|+|||||++.++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455679999999999999999999865
No 303
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.30 E-value=0.0015 Score=58.16 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=18.7
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++..+.|.|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357789999999999999999998654
No 304
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.29 E-value=0.0018 Score=58.18 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccC
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+..++|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999997654
No 305
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.27 E-value=0.0015 Score=58.40 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=26.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhccCCCCc---cEEEECC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDG 324 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~---G~i~~~g 324 (478)
..++|+|++|||||||+..|.+.+.... |.|..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 4799999999999999999998865432 4444443
No 306
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.26 E-value=0.0023 Score=59.23 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=23.7
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
++|-.+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998765
No 307
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.26 E-value=0.0049 Score=54.11 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=22.6
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
++.-+++++|++|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35568999999999999999999873
No 308
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.25 E-value=0.002 Score=57.77 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 048556 291 TAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
++.|.|++||||||+.+.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
No 309
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.18 E-value=0.0022 Score=64.63 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=26.1
Q ss_pred cccceeeecCCCEEEEEcCCCCChHHHHHHHh
Q 048556 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIE 310 (478)
Q Consensus 279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~ 310 (478)
+++..+++.+| ..+|+|||||||||++.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 35667777764 89999999999999999986
No 310
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.15 E-value=0.0031 Score=57.16 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999764
No 311
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.15 E-value=0.0025 Score=57.41 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 048556 291 TAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
+++|.|++||||||+.+.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988763
No 312
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.15 E-value=0.0027 Score=55.95 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccC
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
-+.++|.|++||||||+.+.|+..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998654
No 313
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.13 E-value=0.003 Score=57.49 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.+.+++|+|++||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998755
No 314
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.12 E-value=0.0027 Score=59.07 Aligned_cols=27 Identities=37% Similarity=0.491 Sum_probs=22.7
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++..++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998654
No 315
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.11 E-value=0.0027 Score=58.41 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++|.||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997654
No 316
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.10 E-value=0.0026 Score=57.89 Aligned_cols=23 Identities=30% Similarity=0.366 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998854
No 317
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.09 E-value=0.0026 Score=56.93 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCChHHHHHHHhccC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 318
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.08 E-value=0.0019 Score=62.86 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=19.9
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
++-+++|.||+||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
No 319
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.07 E-value=0.0026 Score=56.89 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccC
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+.+++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998654
No 320
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.05 E-value=0.0028 Score=58.66 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
.+..+.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987653
No 321
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.04 E-value=0.0029 Score=55.74 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCChHHHHHHHhccC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 322
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.04 E-value=0.012 Score=65.06 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 048556 291 TAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
.+.++||+|+|||++++.++....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999998863
No 323
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.03 E-value=0.0055 Score=53.21 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 048556 291 TAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g 311 (478)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 324
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.03 E-value=0.0031 Score=57.37 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+..+++|.|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998654
No 325
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.00 E-value=0.0032 Score=57.91 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++|+||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997655
No 326
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.99 E-value=0.0033 Score=55.15 Aligned_cols=23 Identities=48% Similarity=0.453 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 327
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.98 E-value=0.0033 Score=56.33 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 048556 291 TAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
+++|.|++||||||+.+.|...+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987653
No 328
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.98 E-value=0.0034 Score=57.30 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCChHHHHHHHhcc
Q 048556 290 TTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
..++|+|++||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999875
No 329
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.96 E-value=0.017 Score=60.44 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=24.5
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 286 IPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++..-+.|.||+|+|||++++.++...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 5667789999999999999999998754
No 330
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.95 E-value=0.0034 Score=54.46 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 331
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.93 E-value=0.0033 Score=60.31 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 048556 291 TAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
+++++|++|||||||++.+.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999753
No 332
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.93 E-value=0.025 Score=55.06 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
++..+.|.||+|+||||+++.+....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998754
No 333
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.92 E-value=0.0036 Score=54.23 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 334
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.90 E-value=0.032 Score=54.80 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCChHHHHHHHhccCC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
..+.|.||+|+|||||++.++....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987653
No 335
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.87 E-value=0.026 Score=55.10 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=31.0
Q ss_pred CCCEEEEeCCCCCCC-HHHHHHHHHHHHHhcCCCeEEEEecCchh
Q 048556 417 DPRILLLDEATSALD-AESERVVQEALDKIMINRTTVIVAHRLST 460 (478)
Q Consensus 417 ~~~ililDEpts~LD-~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 460 (478)
+++++++||.-. +. ......+.+.+.....+..+|++|++...
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 789999999853 34 55666777777665556678888887653
No 336
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.85 E-value=0.0043 Score=54.25 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998764
No 337
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.85 E-value=0.004 Score=59.03 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCChHHHHHHHhccC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
-+++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999997743
No 338
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.85 E-value=0.019 Score=68.04 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=29.7
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEE
Q 048556 286 IPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 320 (478)
Q Consensus 286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 320 (478)
+++|+.+.|.||+|+|||||+..++.......|.+
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V 763 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 763 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence 89999999999999999999999987765544443
No 339
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.004 Score=55.74 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
+.-.++++|++|+|||||++.+.+-..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334899999999999999999988653
No 340
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.84 E-value=0.0041 Score=53.66 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998754
No 341
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.83 E-value=0.036 Score=57.13 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=24.7
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 286 IPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
..+..-+.|.||+|+|||||++.++...
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3566789999999999999999999876
No 342
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.83 E-value=0.0041 Score=58.74 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=23.5
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++-.++|.||+||||||+.+.|+..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998654
No 343
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.83 E-value=0.0049 Score=58.79 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|||||||++.+.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999874
No 344
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.82 E-value=0.0046 Score=53.79 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999997643
No 345
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.81 E-value=0.0041 Score=53.51 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 346
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.79 E-value=0.0039 Score=62.81 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++|||++|+|||||++.|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999986
No 347
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.78 E-value=0.0045 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 348
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.78 E-value=0.0045 Score=53.44 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
.++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 349
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.75 E-value=0.0044 Score=53.78 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
No 350
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.73 E-value=0.0046 Score=59.01 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
++..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999998753
No 351
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.73 E-value=0.0048 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 352
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.73 E-value=0.0048 Score=53.44 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987643
No 353
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.72 E-value=0.0049 Score=53.31 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 354
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.71 E-value=0.0048 Score=53.61 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
No 355
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.70 E-value=0.0051 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 356
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.70 E-value=0.005 Score=54.12 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999887643
No 357
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.69 E-value=0.0052 Score=56.76 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+|-.+.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 358
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.68 E-value=0.005 Score=55.09 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcc
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+--.++++|++|+|||||++.+.+-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999875
No 359
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.68 E-value=0.0098 Score=54.15 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988754
No 360
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.67 E-value=0.0051 Score=53.92 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
.++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 361
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.66 E-value=0.015 Score=56.32 Aligned_cols=42 Identities=14% Similarity=0.316 Sum_probs=28.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecCch
Q 048556 417 DPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHRLS 459 (478)
Q Consensus 417 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 459 (478)
++.++++||+- .++......+.+.+.+...+..+|++|++..
T Consensus 107 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECcc-cCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 47899999963 3555666667777766444556677777754
No 362
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.64 E-value=0.0053 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999998764
No 363
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.64 E-value=0.0051 Score=53.99 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 364
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.63 E-value=0.0054 Score=59.07 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
No 365
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.63 E-value=0.0051 Score=59.52 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCChHHHHHHHhc
Q 048556 289 GTTAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g 311 (478)
..+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 366
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.62 E-value=0.0057 Score=54.51 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccCCC
Q 048556 291 TAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
+++++|++|+|||||++.+.|...+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987643
No 367
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.61 E-value=0.0062 Score=60.42 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=24.4
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
+++..+.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3566899999999999999999998763
No 368
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.60 E-value=0.0053 Score=58.96 Aligned_cols=23 Identities=43% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++++|++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987653
No 369
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.60 E-value=0.0058 Score=52.92 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 370
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.59 E-value=0.0085 Score=56.00 Aligned_cols=27 Identities=19% Similarity=0.176 Sum_probs=19.6
Q ss_pred cCCCE-EEEEcCCCCChHHHHHHHhccC
Q 048556 287 PSGTT-AALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 287 ~~G~~-~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+.|+. +.+.|+.|+||||++--++...
T Consensus 3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35664 7889999999999955554443
No 371
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.56 E-value=0.0059 Score=54.18 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998753
No 372
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.55 E-value=0.03 Score=54.68 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=25.0
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 286 IPSGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
.+.+..+.|.||+|+|||++++.+.....
T Consensus 22 a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred hCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 35677899999999999999999988654
No 373
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.54 E-value=0.054 Score=54.61 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=23.7
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++..+.|.||+|+|||+|++.++...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998763
No 374
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.53 E-value=0.0061 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998863
No 375
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.53 E-value=0.0062 Score=54.50 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 376
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.52 E-value=0.0063 Score=53.89 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++++|++|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998643
No 377
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.52 E-value=0.01 Score=52.80 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 378
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.51 E-value=0.0063 Score=53.98 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 379
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.49 E-value=0.0067 Score=52.43 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 048556 291 TAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g 311 (478)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 380
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.49 E-value=0.0071 Score=53.02 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 381
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.48 E-value=0.0068 Score=52.71 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcc
Q 048556 289 GTTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
.-+++++|++|+|||||++.+.+-
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999753
No 382
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.47 E-value=0.0054 Score=54.17 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhc
Q 048556 288 SGTTAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g 311 (478)
+.-+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445899999999999999999984
No 383
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.47 E-value=0.0065 Score=53.19 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
.++++|++|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 384
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.47 E-value=0.0066 Score=55.83 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
No 385
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.44 E-value=0.0087 Score=54.84 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=27.3
Q ss_pred ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++..-+.+ .|..+.|+||||||||||...|+...
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 455544444 58889999999999999999987643
No 386
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.42 E-value=0.0072 Score=53.10 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999764
No 387
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.41 E-value=0.0087 Score=55.89 Aligned_cols=26 Identities=31% Similarity=0.584 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.+..+.|.|++||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 388
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.41 E-value=0.0073 Score=56.09 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998655
No 389
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.39 E-value=0.0065 Score=55.89 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccC
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+.+++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998764
No 390
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.36 E-value=0.0077 Score=52.68 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998653
No 391
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.36 E-value=0.0077 Score=53.09 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6899999999999999999864
No 392
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.34 E-value=0.0078 Score=58.83 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++|+|++|+|||||++.+.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 393
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.34 E-value=0.0078 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998653
No 394
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.34 E-value=0.0079 Score=53.58 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
No 395
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.32 E-value=0.0097 Score=52.47 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=24.0
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
+.+..+.|+||+|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4457899999999999999999988754
No 396
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.31 E-value=0.0012 Score=73.55 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=37.7
Q ss_pred cceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCeecC
Q 048556 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLK 328 (478)
Q Consensus 281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~ 328 (478)
..++.+++|+.+.++||+|+|||||++.+++... .+-+.+++.++.
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~ 548 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELL 548 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSST
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhh
Confidence 3467789999999999999999999999999875 345667776653
No 397
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.31 E-value=0.01 Score=55.17 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=26.5
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
++|..+.+-|++||||||+.+.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46999999999999999999999988765
No 398
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.30 E-value=0.0079 Score=53.22 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999764
No 399
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.28 E-value=0.0081 Score=56.91 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++|+|++|+|||||++.+.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 400
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.27 E-value=0.014 Score=51.30 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 048556 291 TAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g 311 (478)
+++++|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999983
No 401
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.25 E-value=0.008 Score=55.94 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=25.4
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+.++..++.|+||+||||+|..+.|+.-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45677889999999999999999998766
No 402
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.25 E-value=0.0085 Score=59.53 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCChHHHHHHHhccCC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
..++|+||||||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999987664
No 403
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.25 E-value=0.0045 Score=64.05 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=33.2
Q ss_pred ccccceeeecCCCEEEEEcCCCCChHHHHHHHhccCCCCccEEE
Q 048556 278 IFNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 321 (478)
Q Consensus 278 ~l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 321 (478)
+++.+ +.+-+|++++|+|+||+|||||++.|.+......|.+.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 44444 56778999999999999999999999877654344443
No 404
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.25 E-value=0.0094 Score=52.85 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=22.0
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
++.-+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34457999999999999999999864
No 405
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.25 E-value=0.0087 Score=53.37 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998653
No 406
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.21 E-value=0.009 Score=53.81 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
.++++|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999754
No 407
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.20 E-value=0.009 Score=53.93 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 408
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.20 E-value=0.0091 Score=58.47 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCChHHHHHHHhcc
Q 048556 290 TTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
-+|+|+|++|+|||||++.|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999999985
No 409
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.20 E-value=0.0087 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999764
No 410
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.19 E-value=0.0091 Score=54.57 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCChHHHHHHHhccC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
-.++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998764
No 411
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.17 E-value=0.0092 Score=55.91 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=22.6
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
.+|..+.|.|++||||||+.+.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999987764
No 412
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.15 E-value=0.012 Score=51.85 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6799999999999999999854
No 413
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.15 E-value=0.01 Score=53.47 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 414
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.15 E-value=0.011 Score=51.87 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=21.5
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcc
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+--+++++|++|+|||||++.+.+-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999864
No 415
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.15 E-value=0.01 Score=53.30 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++++|++|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 416
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.15 E-value=0.0092 Score=53.41 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 048556 291 TAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g 311 (478)
.++++|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 789999999999999999987
No 417
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.14 E-value=0.0084 Score=57.10 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=24.7
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 286 IPSGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
.+++..++|.|+.||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35778999999999999999999998763
No 418
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.13 E-value=0.0098 Score=53.03 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999753
No 419
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.12 E-value=0.01 Score=52.36 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 048556 291 TAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g 311 (478)
.++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999988874
No 420
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.12 E-value=0.01 Score=55.01 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=25.5
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
-+|.++.|.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999887764
No 421
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.11 E-value=0.0097 Score=58.40 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccC
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+..++|+||||||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 422
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.11 E-value=0.01 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
No 423
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.11 E-value=0.0094 Score=53.21 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCChHHHHHHHhccC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
-+++++|++|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998764
No 424
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.10 E-value=0.0099 Score=57.17 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|||||||++.+.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 425
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.09 E-value=0.011 Score=54.78 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhcc
Q 048556 290 TTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
-+++++|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999875
No 426
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.09 E-value=0.19 Score=52.36 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=27.9
Q ss_pred cccceeeecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 279 FNGFSLSIPSGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 279 l~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
|+.+---+++|+.+.|.|++|+|||||+.-++.-..
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a 267 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWG 267 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHT
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHH
Confidence 444432489999999999999999999877665443
No 427
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.08 E-value=0.012 Score=55.51 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=25.3
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
+|.+++|.|++||||||+++.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999999887754
No 428
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.08 E-value=0.01 Score=53.13 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 429
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.08 E-value=0.013 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 430
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.07 E-value=0.01 Score=53.68 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCChHHHHHHHhccC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
=+++++|++|+|||||++.+.+-.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 478999999999999999998754
No 431
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.07 E-value=0.03 Score=62.69 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=27.2
Q ss_pred CEEEEEcCCCCChHHHHHHHhccCCCCcc-EEEECC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDG 324 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g 324 (478)
..+.|+||+|+|||++++.|.......++ -|.+|.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 47899999999999999999998755433 344543
No 432
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.06 E-value=0.02 Score=68.76 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=32.1
Q ss_pred Ccccccce--eeecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556 276 EQIFNGFS--LSIPSGTTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 276 ~~~l~~is--~~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
.+.|+++. .-+++|+.+.+.||+|||||||...+.--
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~e 1104 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 1104 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46788876 57999999999999999999999988743
No 433
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.06 E-value=0.016 Score=52.77 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 434
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.03 E-value=0.011 Score=52.86 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 435
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.02 E-value=0.011 Score=53.36 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 436
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.02 E-value=0.011 Score=56.27 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
No 437
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.01 E-value=0.012 Score=52.44 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhc
Q 048556 288 SGTTAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g 311 (478)
+.-+++++|++|+|||||++.+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344789999999999999999985
No 438
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.01 E-value=0.0059 Score=56.03 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccC
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.-+++++|++|+|||||++.+.+-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999864
No 439
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.99 E-value=0.012 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCChHHHHHHHhcc
Q 048556 290 TTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
-+++++|++|+|||||++.+.+-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999873
No 440
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.98 E-value=0.011 Score=57.14 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCChHHHHHHHhc
Q 048556 290 TTAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g 311 (478)
..+.|.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 441
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.97 E-value=0.013 Score=54.23 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
+|.++.+-|++||||||+++.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999999887754
No 442
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.96 E-value=0.084 Score=63.53 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=26.5
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556 286 IPSGTTAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
+++|+.+.|.||+|+|||||+.-++.-...
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~ 409 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR 409 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999998888765543
No 443
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.96 E-value=0.011 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 444
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.95 E-value=0.011 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 445
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.95 E-value=0.012 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCChHHHHHHHhcc
Q 048556 290 TTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
=.++++|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999854
No 446
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.93 E-value=0.012 Score=52.49 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 447
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.93 E-value=0.013 Score=52.69 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 048556 291 TAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
+++++|++|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 799999999999999999988543
No 448
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.92 E-value=0.012 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 449
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.91 E-value=0.012 Score=52.98 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccC
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.-+++++|++|+|||||++.+.+-.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3478999999999999999998643
No 450
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.91 E-value=0.012 Score=53.57 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=23.5
Q ss_pred ccceeeecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 280 ~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
.|+.|.-..--+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcC
Confidence 334333333347999999999999999999874
No 451
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.91 E-value=0.012 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCChHHHHHHHhcc
Q 048556 290 TTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
-+++++|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 452
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.90 E-value=0.079 Score=52.23 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=26.0
Q ss_pred ceeeecCCC---EEEEEcCCCCChHHHHHHHhccCCC
Q 048556 282 FSLSIPSGT---TAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 282 is~~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
+.=.++.|+ .+.+.||.|+||||+++.++..+..
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 333455555 4899999999999999999886543
No 453
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.90 E-value=0.013 Score=52.56 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 454
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.88 E-value=0.012 Score=57.31 Aligned_cols=24 Identities=33% Similarity=0.301 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 048556 291 TAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
.++|+|++|+|||||++.|.|..-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999998753
No 455
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.87 E-value=0.0052 Score=58.42 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=24.1
Q ss_pred ccceeeecCCCEEEEEcCCCCChHHHHHHHhcc
Q 048556 280 NGFSLSIPSGTTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 280 ~~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
.++....++| +.|.||+|+|||||++.+++.
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 3344444555 889999999999999999874
No 456
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.86 E-value=0.012 Score=58.10 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCChHHHHHHHhccCC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
..+.|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999998763
No 457
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.86 E-value=0.012 Score=53.94 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCChHHHHHHHhccC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
-.++++|++|+|||||++-|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998764
No 458
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.85 E-value=0.014 Score=54.56 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=25.5
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
.+|..+++.|++||||||+.+.|...+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999877643
No 459
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.84 E-value=0.014 Score=55.75 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=23.1
Q ss_pred CEEEEEcCCCCChHHHHHHHhccCCCCccE
Q 048556 290 TTAALVGQSGSGKSTVISLIERFYDPQAGE 319 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 319 (478)
..++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876544443
No 460
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.83 E-value=0.013 Score=54.99 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
+|..++|.|+.||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997763
No 461
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.82 E-value=0.014 Score=53.20 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
+++++|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 462
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.81 E-value=0.012 Score=51.80 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=24.5
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
+.+..+.|+||+|+|||||++.+......
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44667899999999999999999887644
No 463
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.81 E-value=0.053 Score=56.39 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=54.5
Q ss_pred ccccCCCCCCChHHHHHHHHHH--HHcC---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 048556 391 TMVGEHGTQLSGGQKQRIAIAR--AILK---------------DPRILLLDEATSALDAESERVVQEALDKIMINRTTVI 453 (478)
Q Consensus 391 t~~~~~g~~LSgGq~Qrl~lAR--all~---------------~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~ 453 (478)
+.+......+||||+|-.-+|. |++. .-.+++|||+ +-+|.+..+..++.++++ +--+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 5556667789999999543333 2211 1257999999 999999999999999876 445666
Q ss_pred EecCchhhhhcCEEEEE
Q 048556 454 VAHRLSTVRNADLIAVI 470 (478)
Q Consensus 454 itH~~~~~~~~d~i~vl 470 (478)
+|=. .....+|.++.+
T Consensus 448 atP~-~i~p~v~~~~~~ 463 (483)
T 3euj_A 448 AAPE-NISPERGTTYKL 463 (483)
T ss_dssp EESS-SCCCSSSEEEEC
T ss_pred ECcc-hhhhccCceEEE
Confidence 7655 445567888765
No 464
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.79 E-value=0.014 Score=53.44 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 465
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.79 E-value=0.017 Score=51.58 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=21.9
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhc
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g 311 (478)
-.|.-+.|.|+||+|||||...|..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4588999999999999999987754
No 466
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.79 E-value=0.01 Score=52.15 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998864
No 467
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.78 E-value=0.014 Score=52.15 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999888653
No 468
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.78 E-value=0.015 Score=52.25 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCChHHHHHHHhcc
Q 048556 290 TTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
-+++++|++|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999864
No 469
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.76 E-value=0.0097 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.443 Sum_probs=9.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998764
No 470
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.76 E-value=0.013 Score=56.41 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++++|++|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999865
No 471
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.76 E-value=0.014 Score=55.58 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++++|++|+|||||++.+.|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 472
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.75 E-value=0.014 Score=52.39 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.7
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhc
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g 311 (478)
++.-+++++|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999975
No 473
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.75 E-value=0.0097 Score=54.40 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999854
No 474
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.75 E-value=0.014 Score=55.75 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccC
Q 048556 291 TAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
.++++|++|+|||||++.+.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
No 475
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.71 E-value=0.019 Score=52.20 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCChHHHHHHHhccC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
-+++++|++|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998653
No 476
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.70 E-value=0.014 Score=52.69 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 477
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.60 E-value=0.016 Score=56.69 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccC
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
...+.|+||||||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3478999999999999999998765
No 478
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.55 E-value=0.014 Score=51.94 Aligned_cols=24 Identities=13% Similarity=0.335 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhc
Q 048556 288 SGTTAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g 311 (478)
+.-+++++|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 445799999999999999999964
No 479
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.52 E-value=0.0076 Score=62.02 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=29.6
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccCCCCccEEEECCee
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVN 326 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 326 (478)
...++++|++|+||||++..|++.+.....++.+-..|
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 35899999999999999999999887543455553333
No 480
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.51 E-value=0.017 Score=51.62 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 481
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.51 E-value=0.019 Score=52.96 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 482
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.47 E-value=0.022 Score=52.96 Aligned_cols=25 Identities=40% Similarity=0.659 Sum_probs=22.5
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHh
Q 048556 286 IPSGTTAALVGQSGSGKSTVISLIE 310 (478)
Q Consensus 286 i~~G~~~~ivG~sGsGKSTL~~ll~ 310 (478)
+++|+.+.|.|++|+|||||+.-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999986543
No 483
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.46 E-value=0.012 Score=59.28 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=29.2
Q ss_pred cceeeecCCCEEEEEcCCCCChHHHHHHHhccC
Q 048556 281 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 281 ~is~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
|.=+.|-+|++.+|+|++|+|||||+..|+...
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 455778999999999999999999999888764
No 484
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.34 E-value=0.021 Score=52.51 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccCC
Q 048556 291 TAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
++.|+||+||||+|..+.|+.-|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999997763
No 485
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.32 E-value=0.019 Score=52.70 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCChHHHHHHHhccC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
-+++|+|++|+|||||++-+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999888764
No 486
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.30 E-value=0.15 Score=60.47 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=29.1
Q ss_pred cccccceee---ecCCCEEEEEcCCCCChHHHHHHHhccCC
Q 048556 277 QIFNGFSLS---IPSGTTAALVGQSGSGKSTVISLIERFYD 314 (478)
Q Consensus 277 ~~l~~is~~---i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 314 (478)
+.|+.+ +. +++|+.+.|.||+|+|||||+.-++.-..
T Consensus 369 ~~LD~l-Lg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~ 408 (1706)
T 3cmw_A 369 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (1706)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 445554 33 88999999999999999999887765443
No 487
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.28 E-value=0.02 Score=56.15 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=24.8
Q ss_pred eecCCCEEEEEcCCCCChHHHHHHHhc
Q 048556 285 SIPSGTTAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 285 ~i~~G~~~~ivG~sGsGKSTL~~ll~g 311 (478)
-+++|+++.|.||+|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999999988775
No 488
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.27 E-value=0.02 Score=51.76 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999999764
No 489
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.26 E-value=0.02 Score=59.48 Aligned_cols=46 Identities=17% Similarity=0.418 Sum_probs=32.9
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhccC----CCCc--------cEEEECCeecCCCC
Q 048556 286 IPSGTTAALVGQSGSGKSTVISLIERFY----DPQA--------GEVLIDGVNLKEFQ 331 (478)
Q Consensus 286 i~~G~~~~ivG~sGsGKSTL~~ll~g~~----~~~~--------G~i~~~g~~~~~~~ 331 (478)
.++|-+++|+|++|+|||||++.|.+-. .+.. ..+.++|.++.-+|
T Consensus 221 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liD 278 (462)
T 3geh_A 221 LRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLD 278 (462)
T ss_dssp HHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEE
Confidence 3456679999999999999999998852 1112 35777887654443
No 490
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.26 E-value=0.022 Score=51.39 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCChHHHH-HHHhccC
Q 048556 288 SGTTAALVGQSGSGKSTVI-SLIERFY 313 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~-~ll~g~~ 313 (478)
+|.++.++||.||||||++ +++.++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4889999999999999997 5555443
No 491
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.21 E-value=0.023 Score=51.55 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=19.7
Q ss_pred CCEEEEEcCCCCChHHHHHHHhc
Q 048556 289 GTTAALVGQSGSGKSTVISLIER 311 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g 311 (478)
.=+++++|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34789999999999999977764
No 492
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.20 E-value=0.19 Score=47.02 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=38.4
Q ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEecC-----------chhhhhcCEEEEEe
Q 048556 416 KDPRILLLDEATSALDAESERVVQEALDKIMINRTTVIVAHR-----------LSTVRNADLIAVIH 471 (478)
Q Consensus 416 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~-----------~~~~~~~d~i~vl~ 471 (478)
.+.+++++||.--..| ..++.+.+.. .+..||+..++ ...+..||.|.-|.
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999998865 4455566554 57899999999 34567799987763
No 493
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.20 E-value=0.011 Score=53.30 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=4.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
.++++|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7899999999999999988765
No 494
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.18 E-value=0.022 Score=55.61 Aligned_cols=25 Identities=44% Similarity=0.573 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcc
Q 048556 288 SGTTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 288 ~G~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
++-+++++|++|+|||||++.+.+-
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4458999999999999999997765
No 495
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=94.15 E-value=0.023 Score=52.26 Aligned_cols=22 Identities=36% Similarity=0.598 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
.++++|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 496
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.11 E-value=0.022 Score=57.83 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=21.3
Q ss_pred CEEEEEcCCCCChHHHHHHHhccC
Q 048556 290 TTAALVGQSGSGKSTVISLIERFY 313 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~~ 313 (478)
..++|.||||||||||...|+.-+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998665
No 497
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.08 E-value=0.3 Score=50.03 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=27.5
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccCCCCcc-EEEE
Q 048556 287 PSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLI 322 (478)
Q Consensus 287 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~ 322 (478)
++...++++|++|+||||+.--|+..+.-..| ++.+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVll 134 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV 134 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 34568999999999999999999877754324 4444
No 498
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.04 E-value=0.025 Score=51.79 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCChHHHHHHHhcc
Q 048556 290 TTAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 290 ~~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
-+++++|++|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 37899999999999999998764
No 499
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.88 E-value=0.027 Score=51.08 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 048556 291 TAALVGQSGSGKSTVISLIERF 312 (478)
Q Consensus 291 ~~~ivG~sGsGKSTL~~ll~g~ 312 (478)
+++++|++|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998753
No 500
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.82 E-value=0.034 Score=53.70 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccCCC
Q 048556 289 GTTAALVGQSGSGKSTVISLIERFYDP 315 (478)
Q Consensus 289 G~~~~ivG~sGsGKSTL~~ll~g~~~~ 315 (478)
+-.++++|.+|+|||||+|.|.|-...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCcee
Confidence 347999999999999999999987643
Done!