BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048561
(382 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 113/242 (46%), Gaps = 33/242 (13%)
Query: 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK 127
AL +D +G +L+ I +L L + +SN+F G I P L L L ++ NK
Sbjct: 224 ALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 280
Query: 128 FSGTFPVAILGKND-LSFLDIRFNFFTGSVPP--------------------------QV 160
F+G P + G D L+ LD+ N F G+VPP +
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340
Query: 161 FMQTLDVLFLNNNNFMQKLPQNLGSTPA--LYLTFANNKFTGSI-PRSIGKLSSTLIEVL 217
M+ L VL L+ N F +LP++L + A L L ++N F+G I P +TL E+
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 218 FLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPE 277
NN TG +P L E S N L+G +P SLG L K+ L L N+L G++P+
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 278 VL 279
L
Sbjct: 461 EL 462
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 100/220 (45%), Gaps = 7/220 (3%)
Query: 64 LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPY--LYEL 121
+ + + + FN F P + + L +SN FSG I P L Q P L EL
Sbjct: 342 MRGLKVLDLSFNEFSGELP--ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 122 DISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV-FMQTLDVLFLNNNNFMQKLP 180
+ NN F+G P + ++L L + FN+ +G++P + + L L L N ++P
Sbjct: 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Query: 181 QNLGSTPALY-LTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARV 239
Q L L L N TG IP + ++ L + NN LTG +P +G L +
Sbjct: 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTN-LNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 240 FDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVL 279
SNN +G +P LG + L+L+ NL G +P +
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 52/255 (20%)
Query: 72 IDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGT 131
+DFN P+ + +L+ ++N+ +G I + +L L L +SNN FSG
Sbjct: 473 LDFNDLTGEIPS---GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529
Query: 132 FPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDV----------LFLNNNNFMQKL-- 179
P + L +LD+ N F G++P +F Q+ + +++ N+ ++
Sbjct: 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589
Query: 180 ----------------------PQNLGST--------------PALYLTFANNKFTGSIP 203
P N+ S ++L + N +G IP
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Query: 204 RSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIER 263
+ IG + I L N++ +G +P E+G LR + D S+N+L G +P ++ L +
Sbjct: 650 KEIGSMPYLFILNLGHNDI-SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708
Query: 264 LNLSGNLLYGQVPEV 278
++LS N L G +PE+
Sbjct: 709 IDLSNNNLSGPIPEM 723
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 94/197 (47%), Gaps = 7/197 (3%)
Query: 88 IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
+ + +L +SN FS I P L L LDIS NK SG F AI +L L+I
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNL-GSTPALY-LTFANNKFTGSIPRS 205
N F G +PP + +++L L L N F ++P L G+ L L + N F G++P
Sbjct: 255 SSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313
Query: 206 IGKLSSTLIEVLFLNNLLTGCLPYE-LGFLREARVFDASNNRLTGPLPCSLGCLE-KIER 263
G S L NN +G LP + L +R +V D S N +G LP SL L +
Sbjct: 314 FGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 264 LNLSGNLLYGQVPEVLC 280
L+LS N G + LC
Sbjct: 373 LDLSSNNFSGPILPNLC 389
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Query: 34 TSDPFNITSTWIGSDICKYKGFYCGHPP---DNLTAIALASIDFNGFELAAPTLDGFIDQ 90
T +P NITS Y GH DN ++ + +N P I
Sbjct: 609 TRNPCNITSR-----------VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK---EIGS 654
Query: 91 LPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN 150
+P L + + N SG+I ++ L L LD+S+NK G P A+ L+ +D+ N
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Query: 151 FFTGSVPPQVFMQTL-DVLFLNN 172
+G +P +T FLNN
Sbjct: 715 NLSGPIPEMGQFETFPPAKFLNN 737
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 113/242 (46%), Gaps = 33/242 (13%)
Query: 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK 127
AL +D +G +L+ I +L L + +SN+F G I P L L L ++ NK
Sbjct: 221 ALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 277
Query: 128 FSGTFPVAILGKND-LSFLDIRFNFFTGSVPP--------------------------QV 160
F+G P + G D L+ LD+ N F G+VPP +
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 337
Query: 161 FMQTLDVLFLNNNNFMQKLPQNLGSTPA--LYLTFANNKFTGSI-PRSIGKLSSTLIEVL 217
M+ L VL L+ N F +LP++L + A L L ++N F+G I P +TL E+
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 218 FLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPE 277
NN TG +P L E S N L+G +P SLG L K+ L L N+L G++P+
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 278 VL 279
L
Sbjct: 458 EL 459
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 100/220 (45%), Gaps = 7/220 (3%)
Query: 64 LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPY--LYEL 121
+ + + + FN F P + + L +SN FSG I P L Q P L EL
Sbjct: 339 MRGLKVLDLSFNEFSGELP--ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 396
Query: 122 DISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV-FMQTLDVLFLNNNNFMQKLP 180
+ NN F+G P + ++L L + FN+ +G++P + + L L L N ++P
Sbjct: 397 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Query: 181 QNLGSTPALY-LTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARV 239
Q L L L N TG IP + ++ L + NN LTG +P +G L +
Sbjct: 457 QELMYVKTLETLILDFNDLTGEIPSGLSNCTN-LNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 240 FDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVL 279
SNN +G +P LG + L+L+ NL G +P +
Sbjct: 516 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 110/255 (43%), Gaps = 52/255 (20%)
Query: 72 IDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGT 131
+DFN P+ + +L+ ++N+ +G I + +L L L +SNN FSG
Sbjct: 470 LDFNDLTGEIPS---GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 526
Query: 132 FPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDV----------LFLNNNNFMQKL-- 179
P + L +LD+ N F G++P +F Q+ + +++ N+ ++
Sbjct: 527 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 586
Query: 180 ----------------------PQNLGST--------------PALYLTFANNKFTGSIP 203
P N+ S ++L + N +G IP
Sbjct: 587 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Query: 204 RSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIER 263
+ IG + I L N++ +G +P E+G LR + D S+N+L G +P ++ L +
Sbjct: 647 KEIGSMPYLFILNLGHNDI-SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 705
Query: 264 LNLSGNLLYGQVPEV 278
++LS N L G +PE+
Sbjct: 706 IDLSNNNLSGPIPEM 720
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 94/197 (47%), Gaps = 7/197 (3%)
Query: 88 IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
+ + +L +SN FS I P L L LDIS NK SG F AI +L L+I
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNL-GSTPALY-LTFANNKFTGSIPRS 205
N F G +PP + +++L L L N F ++P L G+ L L + N F G++P
Sbjct: 252 SSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 310
Query: 206 IGKLSSTLIEVLFLNNLLTGCLPYE-LGFLREARVFDASNNRLTGPLPCSLGCLE-KIER 263
G S L NN +G LP + L +R +V D S N +G LP SL L +
Sbjct: 311 FGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 264 LNLSGNLLYGQVPEVLC 280
L+LS N G + LC
Sbjct: 370 LDLSSNNFSGPILPNLC 386
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 18/143 (12%)
Query: 34 TSDPFNITSTWIGSDICKYKGFYCGHPP---DNLTAIALASIDFNGFELAAPTLDGFIDQ 90
T +P NITS Y GH DN ++ + +N P I
Sbjct: 606 TRNPCNITSR-----------VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK---EIGS 651
Query: 91 LPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN 150
+P L + + N SG+I ++ L L LD+S+NK G P A+ L+ +D+ N
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Query: 151 FFTGSVPPQVFMQTL-DVLFLNN 172
+G +P +T FLNN
Sbjct: 712 NLSGPIPEMGQFETFPPAKFLNN 734
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 81/192 (42%), Gaps = 4/192 (2%)
Query: 88 IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147
I +L L + SG I L+Q+ L LD S N SGT P +I +L +
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 148 RFNFFTGSVPPQV--FMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRS 205
N +G++P F + + ++ N K+P + ++ + N G
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216
Query: 206 IGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLN 265
G +T L N+L ++G + D NNR+ G LP L L+ + LN
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDL--GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274
Query: 266 LSGNLLYGQVPE 277
+S N L G++P+
Sbjct: 275 VSFNNLCGEIPQ 286
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 118 LYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNN 173
L LD+ NN+ GT P + L L++ FN G +P +Q DV NN
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 65/159 (40%), Gaps = 35/159 (22%)
Query: 14 FLDQRLAAIY-PIIQTFKNTITSDPFNITST-WIGSDICKYKGFYCGHPPDNLTAIALAS 71
F D+R I+ P I +T D F +T T DI K+ H N++A++LA
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF------HCLANVSAMSLAG 294
Query: 72 IDFNGFE------------------LAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLA 113
+ E PTLD LP L NK G+IS K
Sbjct: 295 VSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD-----LPFLKSLTLTMNK--GSISFKKV 347
Query: 114 QLPYLYELDISNN--KFSGTFPVAILGKNDLSFLDIRFN 150
LP L LD+S N FSG + LG N L LD+ FN
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 65/159 (40%), Gaps = 35/159 (22%)
Query: 14 FLDQRLAAIY-PIIQTFKNTITSDPFNITST-WIGSDICKYKGFYCGHPPDNLTAIALAS 71
F D+R I+ P I +T D F +T T DI K+ H N++A++LA
Sbjct: 236 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF------HCLANVSAMSLAG 289
Query: 72 IDFNGFE------------------LAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLA 113
+ E PTLD LP L NK G+IS K
Sbjct: 290 VSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLD-----LPFLKSLTLTMNK--GSISFKKV 342
Query: 114 QLPYLYELDISNN--KFSGTFPVAILGKNDLSFLDIRFN 150
LP L LD+S N FSG + LG N L LD+ FN
Sbjct: 343 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 381
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 91 LPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVA 135
L L+ A+ NK S ISP LA LP L E+ + NN+ S P+A
Sbjct: 172 LSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVSPLA 214
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 73 DFNGFELAAPTLDGF--IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSG 130
+ N EL++ T+ + L L + +SN+ + + P LA L L LDIS+NK S
Sbjct: 130 NLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD-LKP-LANLTTLERLDISSNKVSD 187
Query: 131 TFPVAILGKNDLSFLD--IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPA 188
+++L K L+ L+ I N + P + LD L LN N +++G+ +
Sbjct: 188 ---ISVLAK--LTNLESLIATNNQISDITPLGILTNLDELSLNGNQL-----KDIGTLAS 237
Query: 189 LY----LTFANNKFTGSIPRS 205
L L ANN+ + P S
Sbjct: 238 LTNLTDLDLANNQISNLAPLS 258
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 86 GFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145
G + L +LSL + N K GT LA L L +LD++NN+ S P++ L K L+ L
Sbjct: 214 GILTNLDELSL-NGNQLKDIGT----LASLTNLTDLDLANNQISNLAPLSGLTK--LTEL 266
Query: 146 DIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLP-QNLGSTPALYLTFAN 195
+ N + ++ P + L L LN N P NL + L L F N
Sbjct: 267 KLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 316
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 91 LPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVA 135
L L+ A+ NK S ISP LA LP L E+ + +N+ S P+A
Sbjct: 178 LSKLTTLRADDNKISD-ISP-LASLPNLIEVHLKDNQISDVSPLA 220
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 217 LFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGC 257
L+LN LP E+ L RV D S+NRLT LP LG
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGS 291
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 20/141 (14%)
Query: 73 DFNGFELAAPTLDGF--IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSG 130
+ N EL++ T+ + L L +SN+ + + P LA L L LDIS+NK S
Sbjct: 130 NLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD-LKP-LANLTTLERLDISSNKVSD 187
Query: 131 TFPVAILGKNDLSFLD--IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPA 188
+++L K L+ L+ I N + P + LD L LN N +++G+ +
Sbjct: 188 ---ISVLAK--LTNLESLIATNNQISDITPLGILTNLDELSLNGNQL-----KDIGTLAS 237
Query: 189 LY----LTFANNKFTGSIPRS 205
L L ANN+ + P S
Sbjct: 238 LTNLTDLDLANNQISNLAPLS 258
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 86 GFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145
G + L +LSL + N K GT LA L L +LD++NN+ S P++ L K L+ L
Sbjct: 214 GILTNLDELSL-NGNQLKDIGT----LASLTNLTDLDLANNQISNLAPLSGLTK--LTEL 266
Query: 146 DIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLP-QNLGSTPALYLTFAN 195
+ N + ++ P + L L LN N P NL + L L F N
Sbjct: 267 KLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 316
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 32/84 (38%)
Query: 74 FNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFP 133
N EL + DG +LP L N+ +G ++ EL + NK
Sbjct: 36 LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95
Query: 134 VAILGKNDLSFLDIRFNFFTGSVP 157
LG + L L++ N + +P
Sbjct: 96 KMFLGLHQLKTLNLYDNQISCVMP 119
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 20/141 (14%)
Query: 73 DFNGFELAAPTLDGF--IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSG 130
+ N EL++ T+ + L L +SN+ + + P LA L L LDIS+NK S
Sbjct: 130 NLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTD-LKP-LANLTTLERLDISSNKVSD 187
Query: 131 TFPVAILGKNDLSFLD--IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPA 188
+++L K L+ L+ I N + P + LD L LN N +++G+ +
Sbjct: 188 ---ISVLAK--LTNLESLIATNNQISDITPLGILTNLDELSLNGNQL-----KDIGTLAS 237
Query: 189 LY----LTFANNKFTGSIPRS 205
L L ANN+ + P S
Sbjct: 238 LTNLTDLDLANNQISNLAPLS 258
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 86 GFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145
G + L +LSL + N K GT LA L L +LD++NN+ S P++ L K L+ L
Sbjct: 214 GILTNLDELSL-NGNQLKDIGT----LASLTNLTDLDLANNQISNLAPLSGLTK--LTEL 266
Query: 146 DIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLP-QNLGSTPALYLTFAN 195
+ N + ++ P + L L LN N P NL + L L F N
Sbjct: 267 KLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 316
>pdb|2D2S|A Chain A, Crystal Structure Of The Exo84p C-Terminal Domains
Length = 235
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 47/121 (38%), Gaps = 19/121 (15%)
Query: 77 FELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK--FSGTFPV 134
FE A TL QL DLS IS + L L L I + S
Sbjct: 34 FESAVETLLDIESQLEDLS----------ERISDEELMLLNLISLKIEQRREAISSKLSQ 83
Query: 135 AILGKNDLSFLDI-RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGST--PALYL 191
+IL N++ L N +P Q LD+ N +NF+Q L +GS P YL
Sbjct: 84 SILSSNEIVHLKSGTENMIKLGLPEQ----ALDLFLQNRSNFIQDLILQIGSVDNPTNYL 139
Query: 192 T 192
T
Sbjct: 140 T 140
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 116 PYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFT----GSVPPQVFMQTLDVLFLN 171
P L EL + NK + ++ G N+L+ L + FN + GS+ ++ L +
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL---- 247
Query: 172 NNNFMQKLPQNLGSTPALYLTFANNKFTGSI 202
NNN + K+P L + + + +N +I
Sbjct: 248 NNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 116 PYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFT----GSVPPQVFMQTLDVLFLN 171
P L EL + NK + ++ G N+L+ L + FN + GS+ ++ L +
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL---- 247
Query: 172 NNNFMQKLPQNLGSTPALYLTFANNKFTGSI 202
NNN + K+P L + + + +N +I
Sbjct: 248 NNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 112 LAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD--IRFNFFTGSVPPQVFMQTLDVLF 169
LA L L LDIS+NK S +++L K L+ L+ I N + P + LD L
Sbjct: 168 LANLTTLERLDISSNKVS---DISVLAK--LTNLESLIATNNQISDITPLGILTNLDELS 222
Query: 170 LNNNNFMQKLPQNLGSTPALY----LTFANNKFTGSIPRS 205
LN N +++G+ +L L ANN+ + P S
Sbjct: 223 LNGNQL-----KDIGTLASLTNLTDLDLANNQISNLAPLS 257
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 86 GFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145
G + L +LSL + N K GT LA L L +LD++NN+ S P++ L K L+ L
Sbjct: 213 GILTNLDELSL-NGNQLKDIGT----LASLTNLTDLDLANNQISNLAPLSGLTK--LTEL 265
Query: 146 DIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLP-QNLGSTPALYLTFAN 195
+ N + ++ P + L L LN N P NL + L L F N
Sbjct: 266 KLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 315
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 85 DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144
DG D+L +L+ + N+ +L L ELD+S N+ + P + K L+
Sbjct: 126 DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDK--LTQ 182
Query: 145 L-DIR-FNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTG 200
L D+R + SVP VF + +L ++L++N P + YL+ NK +G
Sbjct: 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN------PWDCTCPGIRYLSEWINKHSG 236
Query: 201 SIPRSIGKLS 210
+ S G ++
Sbjct: 237 VVRNSAGSVA 246
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 112 LAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD--IRFNFFTGSVPPQVFMQTLDVLF 169
LA L L LDIS+NK S +++L K L+ L+ I N + P + LD L
Sbjct: 172 LANLTTLERLDISSNKVS---DISVLAK--LTNLESLIATNNQISDITPLGILTNLDELS 226
Query: 170 LNNNNFMQKLPQNLGSTPALY----LTFANNKFTGSIPRS 205
LN N +++G+ +L L ANN+ + P S
Sbjct: 227 LNGNQL-----KDIGTLASLTNLTDLDLANNQISNLAPLS 261
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 86 GFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145
G + L +LSL + N K GT LA L L +LD++NN+ S P++ L K L+ L
Sbjct: 217 GILTNLDELSL-NGNQLKDIGT----LASLTNLTDLDLANNQISNLAPLSGLTK--LTEL 269
Query: 146 DIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLP-QNLGSTPALYLTFAN 195
+ N + ++ P + L L LN N P NL + L L F N
Sbjct: 270 KLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 319
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 112 LAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD--IRFNFFTGSVPPQVFMQTLDVLF 169
LA L L LDIS+NK S +++L K L+ L+ I N + P + LD L
Sbjct: 173 LANLTTLERLDISSNKVS---DISVLAK--LTNLESLIATNNQISDITPLGILTNLDELS 227
Query: 170 LNNNNFMQKLPQNLGSTPALY----LTFANNKFTGSIPRS 205
LN N +++G+ +L L ANN+ + P S
Sbjct: 228 LNGNQL-----KDIGTLASLTNLTDLDLANNQISNLAPLS 262
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 86 GFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145
G + L +LSL + N K GT LA L L +LD++NN+ S P++ L K L+ L
Sbjct: 218 GILTNLDELSL-NGNQLKDIGT----LASLTNLTDLDLANNQISNLAPLSGLTK--LTEL 270
Query: 146 DIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLP-QNLGSTPALYLTFAN 195
+ N + ++ P + L L LN N P NL + L L F N
Sbjct: 271 KLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 320
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 112 LAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD--IRFNFFTGSVPPQVFMQTLDVLF 169
LA L L LDIS+NK S +++L K L+ L+ I N + P + LD L
Sbjct: 168 LANLTTLERLDISSNKVS---DISVLAK--LTNLESLIATNNQISDITPLGILTNLDELS 222
Query: 170 LNNNNFMQKLPQNLGSTPALY----LTFANNKFTGSIPRS 205
LN N +++G+ +L L ANN+ + P S
Sbjct: 223 LNGNQL-----KDIGTLASLTNLTDLDLANNQISNLAPLS 257
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 86 GFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145
G + L +LSL + N K GT LA L L +LD++NN+ S P++ L K L+ L
Sbjct: 213 GILTNLDELSL-NGNQLKDIGT----LASLTNLTDLDLANNQISNLAPLSGLTK--LTEL 265
Query: 146 DIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLP-QNLGSTPALYLTFAN 195
+ N + ++ P + L L LN N P NL + L L F N
Sbjct: 266 KLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 315
>pdb|3T4P|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani In Complex With Designed
Tetrapeptide
pdb|3TBH|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase In
Complex With Octapeptide Derived From Serine Acetyl
Transferase Of Leishmania Donovani
pdb|3SPX|A Chain A, Crystal Structure Of O-Acetyl Serine Sulfhydrylase From
Leishmania Donovani
Length = 334
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 169 FLNNNNFMQKLPQNLGSTPALYLTFANN 196
F + N Q + Q +G TPALYL NN
Sbjct: 5 FDKSKNVAQSIDQLIGQTPALYLNKLNN 32
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 47 SDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSG 106
SD+ G + H PD T++ +I E++ L+ + + P+L N
Sbjct: 166 SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225
Query: 107 TISPKLAQLPYLYEL-------DISNNKFSGTFPVAILGKNDLSFL 145
++ L + P L EL ++ + +SG VA+ G +L L
Sbjct: 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCL 270
>pdb|4AIR|A Chain A, Leishmania Major Cysteine Synthase
pdb|4AIR|B Chain B, Leishmania Major Cysteine Synthase
Length = 354
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 169 FLNNNNFMQKLPQNLGSTPALYLTFANN 196
F + N Q + Q +G TPALYL NN
Sbjct: 26 FDKSRNVAQSIDQLIGQTPALYLNKLNN 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,366,115
Number of Sequences: 62578
Number of extensions: 470325
Number of successful extensions: 1251
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1126
Number of HSP's gapped (non-prelim): 71
length of query: 382
length of database: 14,973,337
effective HSP length: 101
effective length of query: 281
effective length of database: 8,652,959
effective search space: 2431481479
effective search space used: 2431481479
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)