Query 048561
Match_columns 382
No_of_seqs 311 out of 4057
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 10:39:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.7E-36 3.6E-41 324.4 19.4 290 19-319 27-321 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.6E-30 3.6E-35 278.3 14.0 283 67-352 308-620 (968)
3 KOG4194 Membrane glycoprotein 99.9 2E-28 4.3E-33 231.3 1.2 271 68-341 174-454 (873)
4 KOG4194 Membrane glycoprotein 99.9 2E-28 4.4E-33 231.2 0.0 249 89-339 170-429 (873)
5 KOG0444 Cytoskeletal regulator 99.9 4.9E-27 1.1E-31 223.5 -1.9 253 67-325 7-287 (1255)
6 KOG0472 Leucine-rich repeat pr 99.9 2.3E-26 4.9E-31 208.9 -5.0 261 67-339 45-310 (565)
7 KOG0444 Cytoskeletal regulator 99.9 4.1E-25 8.9E-30 210.5 -3.1 264 68-340 56-376 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 1.1E-25 2.4E-30 204.5 -7.5 247 66-324 67-315 (565)
9 KOG4237 Extracellular matrix p 99.8 5.8E-23 1.3E-27 186.5 -3.0 272 67-341 67-361 (498)
10 PLN03210 Resistant to P. syrin 99.8 8E-20 1.7E-24 197.5 20.5 254 61-324 605-888 (1153)
11 PRK15370 E3 ubiquitin-protein 99.8 2.7E-20 5.9E-25 189.9 13.8 243 69-340 180-429 (754)
12 KOG0618 Serine/threonine phosp 99.8 1.2E-21 2.6E-26 194.3 -1.1 262 68-339 220-489 (1081)
13 PRK15370 E3 ubiquitin-protein 99.8 1.2E-19 2.7E-24 185.1 10.7 227 67-320 199-429 (754)
14 PRK15387 E3 ubiquitin-protein 99.8 8.1E-19 1.8E-23 178.3 12.4 219 68-320 223-459 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 3.6E-18 7.8E-23 173.7 15.3 194 69-297 203-396 (788)
16 KOG0618 Serine/threonine phosp 99.8 1.5E-20 3.3E-25 186.7 -4.3 242 66-318 240-488 (1081)
17 PLN03210 Resistant to P. syrin 99.8 2.3E-17 5E-22 178.6 19.2 276 68-356 590-908 (1153)
18 KOG0617 Ras suppressor protein 99.7 9.9E-20 2.1E-24 148.3 -1.6 164 88-280 29-193 (264)
19 KOG4237 Extracellular matrix p 99.7 1.5E-19 3.3E-24 164.4 -2.7 257 62-320 86-360 (498)
20 KOG0617 Ras suppressor protein 99.7 1.9E-19 4.2E-24 146.6 -4.2 165 112-305 29-195 (264)
21 cd00116 LRR_RI Leucine-rich re 99.7 4E-19 8.7E-24 166.7 -4.3 251 72-322 3-294 (319)
22 cd00116 LRR_RI Leucine-rich re 99.7 9.2E-19 2E-23 164.3 -6.1 250 68-318 24-319 (319)
23 PLN03150 hypothetical protein; 99.6 1.4E-15 3E-20 154.4 13.6 157 18-180 369-532 (623)
24 KOG0532 Leucine-rich repeat (L 99.4 2.5E-15 5.4E-20 142.9 -5.5 190 118-316 77-270 (722)
25 KOG0532 Leucine-rich repeat (L 99.4 1.8E-14 3.8E-19 137.2 0.2 213 71-294 54-271 (722)
26 COG4886 Leucine-rich repeat (L 99.4 1.5E-12 3.2E-17 126.0 8.7 195 96-300 97-294 (394)
27 COG4886 Leucine-rich repeat (L 99.4 1.3E-12 2.7E-17 126.6 8.1 196 119-323 96-294 (394)
28 KOG3207 Beta-tubulin folding c 99.3 7.7E-13 1.7E-17 122.6 2.1 131 188-319 199-339 (505)
29 KOG1259 Nischarin, modulator o 99.2 6.8E-13 1.5E-17 117.6 -1.3 207 109-324 207-417 (490)
30 KOG3207 Beta-tubulin folding c 99.2 4E-12 8.8E-17 117.8 0.6 207 89-298 118-341 (505)
31 PLN03150 hypothetical protein; 99.1 7.1E-11 1.5E-15 120.3 6.9 90 94-183 420-510 (623)
32 KOG0531 Protein phosphatase 1, 99.0 9.5E-11 2.1E-15 114.0 3.5 241 67-321 72-320 (414)
33 KOG1259 Nischarin, modulator o 99.0 7.1E-11 1.5E-15 104.9 1.7 199 132-338 206-411 (490)
34 KOG0531 Protein phosphatase 1, 99.0 9.1E-11 2E-15 114.2 0.6 220 89-320 69-291 (414)
35 KOG1909 Ran GTPase-activating 99.0 2.5E-11 5.5E-16 109.8 -3.2 242 68-319 31-311 (382)
36 KOG4658 Apoptotic ATPase [Sign 98.9 7.6E-10 1.6E-14 115.6 5.3 251 67-322 545-810 (889)
37 PF14580 LRR_9: Leucine-rich r 98.9 7.9E-10 1.7E-14 93.5 3.7 107 211-322 19-129 (175)
38 PF13855 LRR_8: Leucine rich r 98.9 1.6E-09 3.5E-14 75.4 3.8 61 92-152 1-61 (61)
39 PF14580 LRR_9: Leucine-rich r 98.9 1.8E-09 3.9E-14 91.3 4.8 101 68-175 20-125 (175)
40 KOG1859 Leucine-rich repeat pr 98.8 4.1E-10 8.9E-15 110.6 -1.4 197 116-322 84-295 (1096)
41 KOG1909 Ran GTPase-activating 98.8 4.8E-10 1.1E-14 101.5 -2.3 222 88-320 26-284 (382)
42 PF13855 LRR_8: Leucine rich r 98.8 3.1E-09 6.7E-14 73.9 2.2 58 260-317 2-60 (61)
43 PF08263 LRRNT_2: Leucine rich 98.7 3E-08 6.6E-13 63.4 4.4 39 20-58 2-43 (43)
44 KOG1859 Leucine-rich repeat pr 98.7 1.2E-09 2.6E-14 107.4 -3.6 233 139-380 83-350 (1096)
45 KOG4658 Apoptotic ATPase [Sign 98.5 4.1E-08 8.8E-13 102.8 3.1 245 68-320 524-784 (889)
46 COG5238 RNA1 Ran GTPase-activa 98.3 2.6E-08 5.7E-13 87.6 -4.4 235 68-323 31-320 (388)
47 KOG2982 Uncharacterized conser 98.2 9.2E-07 2E-11 79.0 3.4 106 69-174 47-157 (418)
48 KOG2120 SCF ubiquitin ligase, 98.2 3.2E-08 7E-13 88.2 -5.7 173 117-293 186-373 (419)
49 PF12799 LRR_4: Leucine Rich r 98.2 8.9E-07 1.9E-11 56.8 2.1 39 284-322 2-40 (44)
50 KOG4579 Leucine-rich repeat (L 98.2 8.5E-08 1.9E-12 76.1 -3.9 111 211-323 27-140 (177)
51 PF12799 LRR_4: Leucine Rich r 98.1 2.6E-06 5.6E-11 54.6 3.5 36 117-153 2-37 (44)
52 KOG4579 Leucine-rich repeat (L 98.1 2.7E-07 5.9E-12 73.2 -2.0 90 68-161 54-143 (177)
53 KOG2982 Uncharacterized conser 98.1 7.4E-07 1.6E-11 79.6 0.0 219 93-320 46-291 (418)
54 COG5238 RNA1 Ran GTPase-activa 98.0 1.3E-06 2.9E-11 77.1 0.4 222 88-320 26-286 (388)
55 PRK15386 type III secretion pr 98.0 1.8E-05 4E-10 75.2 7.4 74 88-173 48-122 (426)
56 KOG2120 SCF ubiquitin ligase, 98.0 4.5E-08 9.7E-13 87.3 -9.5 199 68-269 160-373 (419)
57 PRK15386 type III secretion pr 97.7 4.7E-05 1E-09 72.5 5.4 139 112-270 48-188 (426)
58 KOG1644 U2-associated snRNP A' 97.6 0.00012 2.7E-09 62.2 6.1 101 68-172 43-149 (233)
59 KOG3665 ZYG-1-like serine/thre 97.4 3.5E-05 7.5E-10 79.1 0.3 118 201-320 138-264 (699)
60 KOG1644 U2-associated snRNP A' 97.4 0.00029 6.3E-09 60.0 4.9 103 211-315 42-149 (233)
61 KOG3665 ZYG-1-like serine/thre 97.3 0.0001 2.2E-09 75.7 2.2 110 66-178 147-265 (699)
62 KOG2739 Leucine-rich acidic nu 97.0 0.00086 1.9E-08 59.3 4.1 99 211-313 43-150 (260)
63 KOG2739 Leucine-rich acidic nu 96.9 0.00064 1.4E-08 60.1 2.6 85 89-175 40-128 (260)
64 PF13306 LRR_5: Leucine rich r 96.1 0.015 3.3E-07 46.3 5.9 83 87-173 7-91 (129)
65 KOG2123 Uncharacterized conser 95.8 0.00063 1.4E-08 60.8 -3.7 97 211-312 19-123 (388)
66 PF00560 LRR_1: Leucine Rich R 95.5 0.0053 1.1E-07 32.8 0.5 18 118-136 2-19 (22)
67 PF13504 LRR_7: Leucine rich r 95.4 0.0091 2E-07 29.6 1.2 16 307-322 2-17 (17)
68 KOG4308 LRR-containing protein 95.0 0.00038 8.2E-09 68.5 -8.7 182 116-297 87-304 (478)
69 PF13306 LRR_5: Leucine rich r 94.9 0.065 1.4E-06 42.6 5.7 99 68-172 13-112 (129)
70 PF00560 LRR_1: Leucine Rich R 94.8 0.013 2.7E-07 31.3 0.8 22 93-115 1-22 (22)
71 KOG2123 Uncharacterized conser 94.3 0.013 2.8E-07 52.6 0.1 97 141-241 20-123 (388)
72 KOG4341 F-box protein containi 94.1 0.0012 2.5E-08 62.2 -7.1 134 211-354 294-439 (483)
73 PF13504 LRR_7: Leucine rich r 93.3 0.064 1.4E-06 26.5 1.6 12 142-153 3-14 (17)
74 KOG1947 Leucine rich repeat pr 93.1 0.0086 1.9E-07 59.2 -3.5 108 90-197 186-306 (482)
75 KOG4308 LRR-containing protein 93.1 0.0013 2.8E-08 64.9 -9.2 201 94-294 89-329 (478)
76 smart00370 LRR Leucine-rich re 92.6 0.11 2.3E-06 28.8 2.0 20 305-324 1-20 (26)
77 smart00369 LRR_TYP Leucine-ric 92.6 0.11 2.3E-06 28.8 2.0 20 305-324 1-20 (26)
78 KOG0473 Leucine-rich repeat pr 91.8 0.0032 6.8E-08 55.0 -7.2 83 67-153 42-124 (326)
79 smart00369 LRR_TYP Leucine-ric 91.5 0.16 3.5E-06 28.0 1.9 18 140-158 2-19 (26)
80 smart00370 LRR Leucine-rich re 91.5 0.16 3.5E-06 28.0 1.9 18 140-158 2-19 (26)
81 smart00364 LRR_BAC Leucine-ric 90.9 0.15 3.3E-06 28.2 1.4 19 306-324 2-20 (26)
82 KOG0473 Leucine-rich repeat pr 90.5 0.004 8.6E-08 54.4 -7.8 89 85-176 35-124 (326)
83 KOG4341 F-box protein containi 87.1 0.013 2.9E-07 55.3 -7.4 250 68-317 139-437 (483)
84 smart00365 LRR_SD22 Leucine-ri 83.0 0.97 2.1E-05 25.1 1.7 17 306-322 2-18 (26)
85 KOG1947 Leucine rich repeat pr 80.1 0.97 2.1E-05 44.5 1.8 64 232-295 240-307 (482)
86 PF13516 LRR_6: Leucine Rich r 79.6 0.52 1.1E-05 25.4 -0.2 13 260-272 3-15 (24)
87 KOG3864 Uncharacterized conser 75.1 0.19 4.1E-06 43.1 -4.1 81 235-315 101-185 (221)
88 smart00368 LRR_RI Leucine rich 64.9 5.6 0.00012 22.3 1.8 15 306-320 2-16 (28)
89 KOG3864 Uncharacterized conser 61.1 1.1 2.4E-05 38.5 -2.3 37 65-102 99-135 (221)
90 KOG3763 mRNA export factor TAP 50.9 6.3 0.00014 39.2 0.6 14 186-199 270-283 (585)
91 KOG4242 Predicted myosin-I-bin 50.8 36 0.00078 33.5 5.6 108 140-248 165-281 (553)
92 KOG3763 mRNA export factor TAP 45.4 9.5 0.00021 38.0 0.9 37 90-126 216-254 (585)
93 KOG2675 Adenylate cyclase-asso 44.2 12 0.00026 35.9 1.4 13 1-13 236-248 (480)
94 smart00367 LRR_CC Leucine-rich 30.4 30 0.00066 18.7 1.1 11 116-126 2-12 (26)
95 TIGR00864 PCC polycystin catio 26.0 47 0.001 39.9 2.5 33 241-273 1-33 (2740)
96 TIGR00864 PCC polycystin catio 22.0 63 0.0014 38.9 2.5 32 73-105 1-32 (2740)
97 PRK09718 hypothetical protein; 20.3 2.9E+02 0.0064 27.5 6.2 10 212-221 290-299 (512)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-36 Score=324.42 Aligned_cols=290 Identities=32% Similarity=0.561 Sum_probs=179.0
Q ss_pred hHHHHHHHHHHHHhCcCCCCCCCCCCC-CCCCCCcCceeeCCCCCCCcccceeEEEcCCCCCCCCCCccccCCCCCCCEE
Q 048561 19 LAAIYPIIQTFKNTITSDPFNITSTWI-GSDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLF 97 (382)
Q Consensus 19 ~~~~~~aL~~~k~~~~~~~~~~~~~W~-~~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L 97 (382)
.+.|+.||++||+++. +|.+...+|. ..|+|.|.|+.|+..+ +++.|+++++++.+ ..+..|..+++|+.|
T Consensus 27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~~~------~v~~L~L~~~~i~~-~~~~~~~~l~~L~~L 98 (968)
T PLN00113 27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNSS------RVVSIDLSGKNISG-KISSAIFRLPYIQTI 98 (968)
T ss_pred CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCCCC------cEEEEEecCCCccc-cCChHHhCCCCCCEE
Confidence 3467889999999996 7878889997 4579999999997532 57888888888777 345667778888888
Q ss_pred EcCCCcCcccCCcccC-CCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcC
Q 048561 98 HANSNKFSGTISPKLA-QLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNF 175 (382)
Q Consensus 98 ~l~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l 175 (382)
++++|.+.+.+|..+. .+++|++|+|++|.+++.+|. ..+++|++|+|++|.+.+.+|..+. +++|++|++++|.+
T Consensus 99 ~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 99 NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence 8888877777776544 667777777777776655553 2355566666666666555555444 55566666666655
Q ss_pred CCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcC
Q 048561 176 MQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCS 254 (382)
Q Consensus 176 ~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 254 (382)
.+.+|..++. .+|++|++++|.+.+.+|..+.++ .+|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..
T Consensus 177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc-CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence 5555555544 455555555555555555555554 55555555555555555555555555555555555555555555
Q ss_pred CCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCC
Q 048561 255 LGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIH 319 (382)
Q Consensus 255 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~ 319 (382)
++.+++|++|++++|.+.+.+|..+..+++|+.|++++|.+++..+ .+..+++|+.|++++|.++
T Consensus 256 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 5555555555555555554455555455555555555555444332 2344444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.6e-30 Score=278.28 Aligned_cols=283 Identities=26% Similarity=0.386 Sum_probs=204.1
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCC-----------------
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFS----------------- 129 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~----------------- 129 (382)
.+++.|++++|.+.+ ..+..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|+++
T Consensus 308 ~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~ 386 (968)
T PLN00113 308 QNLEILHLFSNNFTG-KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386 (968)
T ss_pred CCCcEEECCCCccCC-cCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence 345555565555555 23444555555555555555555555555555555555555555554
Q ss_pred -------ccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCccccc
Q 048561 130 -------GTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTG 200 (382)
Q Consensus 130 -------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~ 200 (382)
+.+|..+..+++|+.|++++|.+++.+|..+. ++.|+.|++++|.+++.++..+.. .+|++|++++|.+.+
T Consensus 387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466 (968)
T ss_pred CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence 44444455555666666666666555555444 566666666666666666555444 667777777777777
Q ss_pred ccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhc
Q 048561 201 SIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC 280 (382)
Q Consensus 201 ~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 280 (382)
.+|..+.. .+|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+.
T Consensus 467 ~~p~~~~~--~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 467 GLPDSFGS--KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred ecCccccc--ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHh
Confidence 77765532 5788899999999988999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCC-CCCc--ccccchhhhccCCCCCCCCCCcCccCCC
Q 048561 281 ALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHY-LPDQ--RSTHECALFFLQPRFCFYPSWYNFIPCS 352 (382)
Q Consensus 281 ~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~-lp~~--~~~~~~~~~~~np~~c~~~~~~~~~~c~ 352 (382)
.+++|+.|+|++|++++..| .+..++.|+.|++++|++.+ +|+. +.......+.||+..|+........+|.
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~ 620 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCK 620 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCc
Confidence 99999999999999998555 67889999999999999987 6753 2344556788999999865544556675
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2e-28 Score=231.29 Aligned_cols=271 Identities=18% Similarity=0.180 Sum_probs=176.8
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
.++.|+|++|.|+. +-.+.|.++.+|.+|.|++|+++...+..|.+|++|+.|+|..|+|...--..|.++++|+.|.|
T Consensus 174 ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 174 NIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CceEEeeccccccc-cccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 45555555555554 33444555555555555555555333334555555555555555554222334555555555566
Q ss_pred cCCCCCCCCCcccc--cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccC
Q 048561 148 RFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLT 224 (382)
Q Consensus 148 s~n~l~~~~p~~~~--l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~ 224 (382)
..|.+. .+.+..+ +.++++|+|..|++...-..++.. ++|+.|++++|.|....++++.-- ++|.+|+|++|+++
T Consensus 253 qrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft-qkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 253 QRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT-QKLKELDLSSNRIT 330 (873)
T ss_pred hhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc-ccceeEeccccccc
Confidence 666655 3433333 677777777777776554444433 777788888888776666666543 77888888888887
Q ss_pred CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCc---hhhcCCCCCCEEEcccccCcccCC-
Q 048561 225 GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVP---EVLCALDNLVNLSLSNNYFTGVGP- 300 (382)
Q Consensus 225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~~- 300 (382)
...+.+|..+..|+.|+|++|.++......|.++++|+.|||++|.|+..+. ..|.++++|+.|+|.+|+|..++.
T Consensus 331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr 410 (873)
T KOG4194|consen 331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR 410 (873)
T ss_pred cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh
Confidence 7777778888888888888888775555667778888888888888876554 356678888888888888887765
Q ss_pred cccCCCCCCEEEccCCCCCCC-CCccccc--chhhhccCCCCCC
Q 048561 301 LCRKLIKNGVLDVNRNCIHYL-PDQRSTH--ECALFFLQPRFCF 341 (382)
Q Consensus 301 ~~~~l~~L~~L~L~~N~l~~l-p~~~~~~--~~~~~~~np~~c~ 341 (382)
.+..++.|++|||.+|.|.++ |+.+..+ ..+.+-...++|+
T Consensus 411 Afsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 411 AFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCD 454 (873)
T ss_pred hhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEe
Confidence 678888899999999998887 4444332 2233334555676
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=2e-28 Score=231.22 Aligned_cols=249 Identities=18% Similarity=0.126 Sum_probs=176.8
Q ss_pred CCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCccc--ccCCCC
Q 048561 89 DQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV--FMQTLD 166 (382)
Q Consensus 89 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~l~~L~ 166 (382)
..=.++++|+|++|.|+..-...|..+.+|..|.|+.|+++...+..|+++++|+.|+|.+|+|. .+.... ++++|+
T Consensus 170 p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~ 248 (873)
T KOG4194|consen 170 PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQ 248 (873)
T ss_pred CCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhh
Confidence 33344555555555554444444555555555555555555222334444555555555555554 221111 155555
Q ss_pred EEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCc
Q 048561 167 VLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNN 245 (382)
Q Consensus 167 ~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 245 (382)
.|.|..|.+...-.+.|.. .++++|++..|++...-..+++++ ..|+.|++++|.+....++.+....+|+.|+|+.|
T Consensus 249 nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 249 NLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN 327 (873)
T ss_pred hhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc-chhhhhccchhhhheeecchhhhcccceeEecccc
Confidence 5555555555444444433 678889999999886666678888 88999999999999889999999999999999999
Q ss_pred cCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC----cccCCCCCCEEEccCCCCCCC
Q 048561 246 RLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP----LCRKLIKNGVLDVNRNCIHYL 321 (382)
Q Consensus 246 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L~~L~L~~N~l~~l 321 (382)
+|+...++.|..+..|++|+|++|.+...-..+|..+++|++|||++|.|+..+. .+..+++|+.|++.+|+|..+
T Consensus 328 ~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I 407 (873)
T KOG4194|consen 328 RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI 407 (873)
T ss_pred ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence 9998788889999999999999999997777889999999999999999998554 367799999999999999999
Q ss_pred CCc----ccccchhhhccCCCC
Q 048561 322 PDQ----RSTHECALFFLQPRF 339 (382)
Q Consensus 322 p~~----~~~~~~~~~~~np~~ 339 (382)
|.. +..++.+++.+|+..
T Consensus 408 ~krAfsgl~~LE~LdL~~Naia 429 (873)
T KOG4194|consen 408 PKRAFSGLEALEHLDLGDNAIA 429 (873)
T ss_pred chhhhccCcccceecCCCCcce
Confidence 852 334555666666653
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=4.9e-27 Score=223.47 Aligned_cols=253 Identities=26% Similarity=0.371 Sum_probs=175.8
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
.-|+..|+++|.++|..+|.....++.+++|.|...++. .+|+.++.+.+|+.|.+++|++. .+...+..++.|+.++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 357888999999998778888888888888888888887 77888888888888888888776 4444555666666666
Q ss_pred ecCCCCCC-CCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhcccc
Q 048561 147 IRFNFFTG-SVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL 223 (382)
Q Consensus 147 Ls~n~l~~-~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l 223 (382)
+..|++.. -+|..++ +..|..|+|++|++. ..|..+.. .++..|++++|+|. .+|..++--...|-.||+++|++
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL 162 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRL 162 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchh
Confidence 66665542 2444444 566666666666653 34444444 44555556666555 45544332224555555555555
Q ss_pred CCCCchhcccCcCCCccccCCccCC-------------------------CCCCcCCCCCCCCCEEeCcCCcCcccCchh
Q 048561 224 TGCLPYELGFLREARVFDASNNRLT-------------------------GPLPCSLGCLEKIERLNLSGNLLYGQVPEV 278 (382)
Q Consensus 224 ~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 278 (382)
. .+|..+..+..|++|+|++|.+. ..+|.++..+.+|..+|++.|.+. .+|+.
T Consensus 163 e-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 163 E-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred h-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 4 34444455555555555555431 246777788889999999999998 88999
Q ss_pred hcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCCcc
Q 048561 279 LCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQR 325 (382)
Q Consensus 279 ~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~ 325 (382)
+..+++|+.|+|++|+|+........+.+|+.|++++|+++.+|+..
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~av 287 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAV 287 (1255)
T ss_pred HhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHH
Confidence 99999999999999999987777777888999999999999888643
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=2.3e-26 Score=208.92 Aligned_cols=261 Identities=24% Similarity=0.285 Sum_probs=220.0
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
..+..++++.|.+.. ....+.++..|++|++.+|++. ..|++++.+..++.++.++|++. .+|..+..+.+|++|+
T Consensus 45 v~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence 357788899998886 4556889999999999999998 78899999999999999999998 8899999999999999
Q ss_pred ecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccC
Q 048561 147 IRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLT 224 (382)
Q Consensus 147 Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~ 224 (382)
+++|.+. .+++.++ +..|+.++..+|+++ ..|+.++. .++..+++.+|++. .+|...-++ +.|+.+|...|.+.
T Consensus 121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m-~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAM-KRLKHLDCNSNLLE 196 (565)
T ss_pred cccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHH-HHHHhcccchhhhh
Confidence 9999998 6777666 888999999999986 45555555 78889999999998 566555555 88999999988876
Q ss_pred CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhc-CCCCCCEEEcccccCcccCCccc
Q 048561 225 GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC-ALDNLVNLSLSNNYFTGVGPLCR 303 (382)
Q Consensus 225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~ 303 (382)
.+|..++.+.+|+.|++..|+|. .+| .|.+++.|++|+++.|+|. .+|.... .++++..|||.+|+++..+..+.
T Consensus 197 -tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~c 272 (565)
T KOG0472|consen 197 -TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC 272 (565)
T ss_pred -cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHH
Confidence 78888999999999999999998 677 7888899999999999998 6776655 88999999999999999888888
Q ss_pred CCCCCCEEEccCCCCCCCCCccccc--chhhhccCCCC
Q 048561 304 KLIKNGVLDVNRNCIHYLPDQRSTH--ECALFFLQPRF 339 (382)
Q Consensus 304 ~l~~L~~L~L~~N~l~~lp~~~~~~--~~~~~~~np~~ 339 (382)
.+.+|+.||+++|.|+++|....++ ..+.+.|||..
T Consensus 273 lLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNPLR 310 (565)
T ss_pred HhhhhhhhcccCCccccCCcccccceeeehhhcCCchH
Confidence 8888999999999999998766643 44566788863
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=4.1e-25 Score=210.50 Aligned_cols=264 Identities=27% Similarity=0.376 Sum_probs=146.4
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCc-ccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFS-GTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
++++|.++.|++.. +.+.++.++.||.+.+..|++. .-+|..+-.+.-|..||||+|+++ ++|..+..-+++-.|+
T Consensus 56 kLEHLs~~HN~L~~--vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLIS--VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLN 132 (1255)
T ss_pred hhhhhhhhhhhhHh--hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEE
Confidence 45555555555543 3444555555555555555543 124445555555555555555555 5555555555555555
Q ss_pred ecCCCCCCCCCcccc--cCCCCEEeCCCCcCCCcCCcCCCC-Cc------------------------chhhhccCcccc
Q 048561 147 IRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGS-TP------------------------ALYLTFANNKFT 199 (382)
Q Consensus 147 Ls~n~l~~~~p~~~~--l~~L~~L~L~~n~l~~~~p~~~~~-~~------------------------L~~L~l~~n~l~ 199 (382)
||+|+|. .||...+ +..|-.|+|++|.+. .+|..+.. .. |+.|.+++.+-+
T Consensus 133 LS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 133 LSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred cccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 5555555 5554443 444555555555442 23322222 22 333333333211
Q ss_pred -cccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchh
Q 048561 200 -GSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEV 278 (382)
Q Consensus 200 -~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 278 (382)
..+|.++..+ .+|..+|++.|.+. ..|..+..+.+|+.|+|++|.|+ .+....+.+.+|++|++++|+++ .+|.+
T Consensus 211 l~N~Ptsld~l-~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~a 286 (1255)
T KOG0444|consen 211 LDNIPTSLDDL-HNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDA 286 (1255)
T ss_pred hhcCCCchhhh-hhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHH
Confidence 2455566665 66777777777766 56677777777777777777777 45555556667777777777777 66777
Q ss_pred hcCCCCCCEEEcccccCc--ccCCcc-----------------------cCCCCCCEEEccCCCCCCCCCccc---ccch
Q 048561 279 LCALDNLVNLSLSNNYFT--GVGPLC-----------------------RKLIKNGVLDVNRNCIHYLPDQRS---THEC 330 (382)
Q Consensus 279 ~~~l~~L~~L~L~~N~l~--~~~~~~-----------------------~~l~~L~~L~L~~N~l~~lp~~~~---~~~~ 330 (382)
++.++.|+.|.+.+|+++ |++..+ ..+.+|+.|.|++|++-.+|+.+- .+..
T Consensus 287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~v 366 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKV 366 (1255)
T ss_pred HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcce
Confidence 777777777777776543 444444 444455555666666666665432 2333
Q ss_pred hhhccCCCCC
Q 048561 331 ALFFLQPRFC 340 (382)
Q Consensus 331 ~~~~~np~~c 340 (382)
+++-.||.+-
T Consensus 367 LDlreNpnLV 376 (1255)
T KOG0444|consen 367 LDLRENPNLV 376 (1255)
T ss_pred eeccCCcCcc
Confidence 4445566654
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1.1e-25 Score=204.47 Aligned_cols=247 Identities=24% Similarity=0.317 Sum_probs=224.6
Q ss_pred ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561 66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145 (382)
Q Consensus 66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 145 (382)
...++.+++..|++.. .+++++.+..++.++.++|++. .+|+.++.+.+|+.|+.++|.+. ++|+.++.+-.|+.+
T Consensus 67 L~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDL 142 (565)
T ss_pred ccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhh
Confidence 4467899999999986 6778999999999999999999 89999999999999999999998 889999999999999
Q ss_pred EecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccC
Q 048561 146 DIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLT 224 (382)
Q Consensus 146 ~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~ 224 (382)
+..+|+++ ++|+.++ +.+|..+++.+|++....|..+....+++++...|-+. .+|..++.+ ..|.-|++..|++.
T Consensus 143 ~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l-~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 143 DATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGL-ESLELLYLRRNKIR 219 (565)
T ss_pred hccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcch-hhhHHHHhhhcccc
Confidence 99999999 7777766 88999999999999877776666688999999999888 999999998 89999999999998
Q ss_pred CCCchhcccCcCCCccccCCccCCCCCCcCCC-CCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCccc
Q 048561 225 GCLPYELGFLREARVFDASNNRLTGPLPCSLG-CLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCR 303 (382)
Q Consensus 225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 303 (382)
.+| .|.++..|..|.++.|.|+ .+|.... .+.++..||+.+|+++ ..|+.++-+.+|++||+++|.|++.++.++
T Consensus 220 -~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLg 295 (565)
T KOG0472|consen 220 -FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLG 295 (565)
T ss_pred -cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccc
Confidence 566 8999999999999999999 6666554 8999999999999999 899999999999999999999999999999
Q ss_pred CCCCCCEEEccCCCCCCCCCc
Q 048561 304 KLIKNGVLDVNRNCIHYLPDQ 324 (382)
Q Consensus 304 ~l~~L~~L~L~~N~l~~lp~~ 324 (382)
++ +|+.|-+.+|.++.+-..
T Consensus 296 nl-hL~~L~leGNPlrTiRr~ 315 (565)
T KOG0472|consen 296 NL-HLKFLALEGNPLRTIRRE 315 (565)
T ss_pred cc-eeeehhhcCCchHHHHHH
Confidence 99 999999999999987543
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=5.8e-23 Score=186.51 Aligned_cols=272 Identities=16% Similarity=0.114 Sum_probs=185.4
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeec-CCCCccCcccccCCCCCcEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISN-NKFSGTFPVAILGKNDLSFL 145 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L 145 (382)
.+.+.|+|..|+|+. +++++|+.+++||.|||++|.|+.+-|++|.++++|..|.+.+ |+|+...-..|.++..|+.|
T Consensus 67 ~~tveirLdqN~I~~-iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISS-IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCccc-CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 356889999999998 7999999999999999999999999999999999988776655 99995555678899999999
Q ss_pred EecCCCCCCCCCcccc--cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCccccc------------ccchhHHHhh
Q 048561 146 DIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTG------------SIPRSIGKLS 210 (382)
Q Consensus 146 ~Ls~n~l~~~~p~~~~--l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~------------~lp~~l~~l~ 210 (382)
.+.-|.+. .++...+ +++|..|.+.+|.+...--..+.. ..++.+.+..|.+.. ..|..++..
T Consensus 146 llNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga- 223 (498)
T KOG4237|consen 146 LLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA- 223 (498)
T ss_pred hcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc-
Confidence 99999998 6665544 899999999999885443335544 667777777766220 111111111
Q ss_pred hhHHHHHhhccccCCCCchhcccC-cCCCccccCCccCCCCCC-cCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEE
Q 048561 211 STLIEVLFLNNLLTGCLPYELGFL-REARVFDASNNRLTGPLP-CSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNL 288 (382)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 288 (382)
.-.....+.++++....+..|... ..+..--.+.+...+.-| ..|..+++|+.|+|++|+|+++-+.+|.+...+++|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 112222333333333333222221 111111112222222223 346677888888888888887777778888888888
Q ss_pred EcccccCcccCC-cccCCCCCCEEEccCCCCCCCC-Ccc---cccchhhhccCCCCCC
Q 048561 289 SLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLP-DQR---STHECALFFLQPRFCF 341 (382)
Q Consensus 289 ~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp-~~~---~~~~~~~~~~np~~c~ 341 (382)
.|..|+|..+.. .+..+..|+.|+|++|+|+.+. ..+ ..+..+.+++||+.|+
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 888887776543 5677777888888888887753 222 2455677788999987
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=8e-20 Score=197.52 Aligned_cols=254 Identities=22% Similarity=0.242 Sum_probs=178.7
Q ss_pred CCCCcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCC
Q 048561 61 PDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKN 140 (382)
Q Consensus 61 ~~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 140 (382)
+..+...+++.|+++++.+.. ++..+..+++|+.|+++++.....+| .++.+++|++|+|++|.....+|..+..++
T Consensus 605 P~~f~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~ 681 (1153)
T PLN03210 605 PSNFRPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLN 681 (1153)
T ss_pred CCcCCccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccC
Confidence 334455678888888888775 44557788899999998876554666 478888999999988776668888888999
Q ss_pred CCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhH--------------
Q 048561 141 DLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSI-------------- 206 (382)
Q Consensus 141 ~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l-------------- 206 (382)
+|++|++++|...+.+|..+.+++|+.|++++|...+.+|... .++++|++.+|.+. .+|..+
T Consensus 682 ~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~ 758 (1153)
T PLN03210 682 KLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIE-EFPSNLRLENLDELILCEMK 758 (1153)
T ss_pred CCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCccc-cccccccccccccccccccc
Confidence 9999999987655578876678888888888887665555432 45667777777765 455432
Q ss_pred ---------------HHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcC
Q 048561 207 ---------------GKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLL 271 (382)
Q Consensus 207 ---------------~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l 271 (382)
....++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|..
T Consensus 759 ~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~ 837 (1153)
T PLN03210 759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR 837 (1153)
T ss_pred hhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc
Confidence 1112456777777776666677777777778888877765443566554 567777777777654
Q ss_pred cccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccC-CCCCCCCCc
Q 048561 272 YGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNR-NCIHYLPDQ 324 (382)
Q Consensus 272 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~ 324 (382)
...+|.. ..+|+.|+|++|.|+.++..+..+++|+.|++++ |+++.+|..
T Consensus 838 L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 838 LRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred ccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc
Confidence 3344432 2567777888887777766677777888888876 667777654
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=2.7e-20 Score=189.91 Aligned_cols=243 Identities=21% Similarity=0.330 Sum_probs=190.9
Q ss_pred eeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEec
Q 048561 69 LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR 148 (382)
Q Consensus 69 l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 148 (382)
...|++++++++. ++..+ .++|+.|++++|.++ .+|..+. .+|++|++++|+++ .+|..+. .+|+.|+|+
T Consensus 180 ~~~L~L~~~~Lts--LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLTT--IPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcCc--CCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 4679999988886 34333 258999999999999 6776654 58999999999998 6777654 579999999
Q ss_pred CCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCc
Q 048561 149 FNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLP 228 (382)
Q Consensus 149 ~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~ 228 (382)
+|.+. .+|..+ ..+|+.|++++|+++ .+|..+. .+|+.|++++|+++ .+|..+. .+|+.|++++|.++. +|
T Consensus 250 ~N~L~-~LP~~l-~s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 250 INRIT-ELPERL-PSALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CCccC-cCChhH-hCCCCEEECcCCccC-ccccccC-CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CC
Confidence 99998 787754 368999999999987 4676554 47999999999998 5776543 579999999999984 45
Q ss_pred hhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCC
Q 048561 229 YELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKN 308 (382)
Q Consensus 229 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L 308 (382)
..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+|+ .+|..+. ++|+.|+|++|+|+.+++.+. ..|
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL 390 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLP--AAL 390 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHH--HHH
Confidence 433 3689999999999984 676653 78999999999998 6777664 689999999999998876543 368
Q ss_pred CEEEccCCCCCCCCCcccc-------cchhhhccCCCCC
Q 048561 309 GVLDVNRNCIHYLPDQRST-------HECALFFLQPRFC 340 (382)
Q Consensus 309 ~~L~L~~N~l~~lp~~~~~-------~~~~~~~~np~~c 340 (382)
+.|++++|+|+.+|+.++. ...+.+.+||...
T Consensus 391 ~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 391 QIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 9999999999999875432 2334556677643
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.81 E-value=1.2e-21 Score=194.33 Aligned_cols=262 Identities=24% Similarity=0.286 Sum_probs=212.1
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
.++.|+.+.|.+.. ... -..-.+|++++++.|++. .+|+.++.+.+|+.|+..+|+++ .+|..+....+|+.|.+
T Consensus 220 ~l~~L~a~~n~l~~-~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 220 SLTALYADHNPLTT-LDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA 294 (1081)
T ss_pred chheeeeccCccee-ecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence 45666666666653 111 112347899999999998 56788899999999999999997 88888889999999999
Q ss_pred cCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC---CcchhhhccCcccccccchhHHHhhhhHHHHHhhcccc
Q 048561 148 RFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS---TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL 223 (382)
Q Consensus 148 s~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~---~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l 223 (382)
.+|.+. .+|.... ..+|++|+|..|++. .+|..+-. ..+..++.+.|.+. ..|..=.+....|+.|++.+|.+
T Consensus 295 ~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 295 AYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred hhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcc
Confidence 999998 7777766 889999999999985 44443322 34667888888877 55643333347899999999999
Q ss_pred CCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCccc
Q 048561 224 TGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCR 303 (382)
Q Consensus 224 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~ 303 (382)
+...-..+.+..+|+.|+|++|++.......+.+++.|++|+|++|+++ .+|..+..+..|++|...+|+|...+ .+.
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~ 449 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELA 449 (1081)
T ss_pred cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhh
Confidence 9887778899999999999999999544455778999999999999999 88999999999999999999999877 889
Q ss_pred CCCCCCEEEccCCCCCC--CCCcc--cccchhhhccCCCC
Q 048561 304 KLIKNGVLDVNRNCIHY--LPDQR--STHECALFFLQPRF 339 (382)
Q Consensus 304 ~l~~L~~L~L~~N~l~~--lp~~~--~~~~~~~~~~np~~ 339 (382)
.++.|+.+|++.|+|+. +|... +.+..+++.||++.
T Consensus 450 ~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 450 QLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 99999999999999998 35433 46777888899974
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.2e-19 Score=185.09 Aligned_cols=227 Identities=25% Similarity=0.311 Sum_probs=183.4
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
..++.|++++|+++. + +..+ ..+|++|++++|.++ .+|..+. .+|+.|+|++|.++ .+|..+. .+|++|+
T Consensus 199 ~~L~~L~Ls~N~Lts-L-P~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNELKS-L-PENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLD 268 (754)
T ss_pred cCCcEEEecCCCCCc-C-Chhh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence 368999999999996 3 3333 358999999999998 6776654 57999999999998 7787764 5899999
Q ss_pred ecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC
Q 048561 147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC 226 (382)
Q Consensus 147 Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~ 226 (382)
+++|+++ .+|..+. .+|+.|++++|++++ +|..+. ..+++|++++|.++ .+|..+. ++|+.|++++|.+++
T Consensus 269 Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp-~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~Lt~- 339 (754)
T PRK15370 269 LFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP-SGITHLNVQSNSLT-ALPETLP---PGLKTLEAGENALTS- 339 (754)
T ss_pred CcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch-hhHHHHHhcCCccc-cCCcccc---ccceeccccCCcccc-
Confidence 9999999 6776543 689999999999974 554443 47899999999998 5776543 579999999999885
Q ss_pred CchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcc----
Q 048561 227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC---- 302 (382)
Q Consensus 227 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~---- 302 (382)
+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|.|+ .+|..+. .+|+.|++++|+|++++..+
T Consensus 340 LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~ 411 (754)
T PRK15370 340 LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFR 411 (754)
T ss_pred CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHh
Confidence 565553 79999999999998 5776553 68999999999999 6676654 47999999999999876533
Q ss_pred cCCCCCCEEEccCCCCCC
Q 048561 303 RKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 303 ~~l~~L~~L~L~~N~l~~ 320 (382)
..++.+..|++.+|.|+.
T Consensus 412 ~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 412 GEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred hcCCCccEEEeeCCCccH
Confidence 445788999999999874
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=8.1e-19 Score=178.34 Aligned_cols=219 Identities=26% Similarity=0.317 Sum_probs=119.0
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
.++.|++..|+++. ++. ..++|++|++++|.++ .+|.. .++|++|++++|.++ .+|..+ .+|+.|++
T Consensus 223 ~L~~L~L~~N~Lt~--LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~L 289 (788)
T PRK15387 223 HITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLWI 289 (788)
T ss_pred CCCEEEccCCcCCC--CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhch---hhcCEEEC
Confidence 57778888888775 232 2467888888888877 45532 356677777777666 444322 34556666
Q ss_pred cCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCC------------------CCcchhhhccCcccccccchhHHHh
Q 048561 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLG------------------STPALYLTFANNKFTGSIPRSIGKL 209 (382)
Q Consensus 148 s~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~------------------~~~L~~L~l~~n~l~~~lp~~l~~l 209 (382)
++|+++ .+|.. .++|+.|++++|++++ +|.... ..+|++|++++|+++ .+|..
T Consensus 290 s~N~Lt-~LP~~--p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~l---- 360 (788)
T PRK15387 290 FGNQLT-SLPVL--PPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTL---- 360 (788)
T ss_pred cCCccc-ccccc--ccccceeECCCCcccc-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCC----
Confidence 666665 44432 3456666666666553 222110 023444555555554 33321
Q ss_pred hhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEE
Q 048561 210 SSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLS 289 (382)
Q Consensus 210 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 289 (382)
+.+|..|++++|.+.. +|.. ..+|+.|++++|.|+ .+|.. .++|+.|++++|.|+ .+|... .+|+.|+
T Consensus 361 p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~ 428 (788)
T PRK15387 361 PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLS 428 (788)
T ss_pred Ccccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhh
Confidence 1334445555555442 3321 234556666666665 23432 245666666666665 344322 3455666
Q ss_pred cccccCcccCCcccCCCCCCEEEccCCCCCC
Q 048561 290 LSNNYFTGVGPLCRKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 290 L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~ 320 (382)
+++|+|+.++..+..+++|+.|+|++|+|++
T Consensus 429 Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 429 VYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred hccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 6666666555555566666666666666665
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=3.6e-18 Score=173.68 Aligned_cols=194 Identities=25% Similarity=0.332 Sum_probs=132.3
Q ss_pred eeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEec
Q 048561 69 LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR 148 (382)
Q Consensus 69 l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 148 (382)
-..|+++.++++. +|..+. .+|+.|++.+|+++ .+|. .+++|++|+|++|+|+ .+|.. .++|++|+++
T Consensus 203 ~~~LdLs~~~Lts--LP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCCc--CCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 3578999999986 444443 48999999999999 5664 2589999999999999 56653 4689999999
Q ss_pred CCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCc
Q 048561 149 FNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLP 228 (382)
Q Consensus 149 ~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~ 228 (382)
+|.++ .+|.. ...|+.|++++|+++. +|.. ..+|++|++++|+++ .+|.. +..|+.|++++|.+++ +|
T Consensus 271 ~N~L~-~Lp~l--p~~L~~L~Ls~N~Lt~-LP~~--p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 271 SNPLT-HLPAL--PSGLCKLWIFGNQLTS-LPVL--PPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred CCchh-hhhhc--hhhcCEEECcCCcccc-cccc--ccccceeECCCCccc-cCCCC----cccccccccccCcccc-cc
Confidence 99998 66652 3679999999999874 4542 257999999999998 45542 2456777888887764 44
Q ss_pred hhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcc
Q 048561 229 YELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG 297 (382)
Q Consensus 229 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 297 (382)
. ...+|+.|++++|+|++ +|... .+|+.|++++|+|. .+|... .+|+.|++++|+|++
T Consensus 339 ~---lp~~Lq~LdLS~N~Ls~-LP~lp---~~L~~L~Ls~N~L~-~LP~l~---~~L~~LdLs~N~Lt~ 396 (788)
T PRK15387 339 T---LPSGLQELSVSDNQLAS-LPTLP---SELYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLTS 396 (788)
T ss_pred c---cccccceEecCCCccCC-CCCCC---cccceehhhccccc-cCcccc---cccceEEecCCcccC
Confidence 2 12467778888887773 44322 34444555555554 233221 234444444444443
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.76 E-value=1.5e-20 Score=186.66 Aligned_cols=242 Identities=25% Similarity=0.328 Sum_probs=200.0
Q ss_pred ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561 66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145 (382)
Q Consensus 66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 145 (382)
...++.++++.|++.+ ++.++..+.+|+.++..+|.++ .+|..+....+|++|++.+|.+. .+|....++..|++|
T Consensus 240 p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL 315 (1081)
T ss_pred cccceeeecchhhhhc--chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence 4578999999999998 4588999999999999999997 78888999999999999999998 888889999999999
Q ss_pred EecCCCCCCCCCcccc--c-CCCCEEeCCCCcCCCcCCcCCCC---CcchhhhccCcccccccchhHHHhhhhHHHHHhh
Q 048561 146 DIRFNFFTGSVPPQVF--M-QTLDVLFLNNNNFMQKLPQNLGS---TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFL 219 (382)
Q Consensus 146 ~Ls~n~l~~~~p~~~~--l-~~L~~L~L~~n~l~~~~p~~~~~---~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~ 219 (382)
+|..|++. .+|+.+. . ..|+.|+.+.|.+. ..| ..+. ..|+.|++.+|.++...-..+... .+|+.|+|+
T Consensus 316 dL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp-~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~-~hLKVLhLs 391 (1081)
T KOG0618|consen 316 DLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLP-SYEENNHAALQELYLANNHLTDSCFPVLVNF-KHLKVLHLS 391 (1081)
T ss_pred eehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccc-cccchhhHHHHHHHHhcCcccccchhhhccc-cceeeeeec
Confidence 99999998 7887554 2 34788888888764 334 2222 568889999999887665556665 789999999
Q ss_pred ccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCccc-
Q 048561 220 NNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV- 298 (382)
Q Consensus 220 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~- 298 (382)
+|++.......+.++..|+.|+||+|+++ .+|..+..+..|++|...+|.+. ..| .+..++.|+.+|++.|+++..
T Consensus 392 yNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 392 YNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred ccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhh
Confidence 99988544456788999999999999998 78888888899999999999998 777 677889999999999998874
Q ss_pred CCcccCCCCCCEEEccCCCC
Q 048561 299 GPLCRKLIKNGVLDVNRNCI 318 (382)
Q Consensus 299 ~~~~~~l~~L~~L~L~~N~l 318 (382)
.+.....++|++||+++|.-
T Consensus 469 l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 469 LPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhCCCcccceeeccCCcc
Confidence 33333447899999999973
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=2.3e-17 Score=178.57 Aligned_cols=276 Identities=16% Similarity=0.136 Sum_probs=187.8
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
.++.|.+.++.+.. ++..| ...+|+.|++.+|.+. .++..+..+++|++|+|+++...+.+|. +..+++|++|+|
T Consensus 590 ~Lr~L~~~~~~l~~--lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLRC--MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCCC--CCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence 46666776666654 34334 4678888888888887 5777778888899999888764446664 778888999999
Q ss_pred cCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC
Q 048561 148 RFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC 226 (382)
Q Consensus 148 s~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~ 226 (382)
++|.....+|..+. +++|+.|++++|...+.+|..+...+|++|++++|.....+|.. ..+|+.|++++|.+. .
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~ 739 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-E 739 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-c
Confidence 88876667887766 78899999988877777887765578888888888655455532 246778888888765 3
Q ss_pred Cchhc------------------------------ccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCc
Q 048561 227 LPYEL------------------------------GFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVP 276 (382)
Q Consensus 227 ~~~~~------------------------------~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 276 (382)
+|..+ ...++|+.|++++|...+.+|..++.+++|+.|++++|...+.+|
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 33221 112467777777777666778888888888888888775444667
Q ss_pred hhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCCccc---ccchhhhccC---------CCCCCCCC
Q 048561 277 EVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRS---THECALFFLQ---------PRFCFYPS 344 (382)
Q Consensus 277 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~---~~~~~~~~~n---------p~~c~~~~ 344 (382)
..+ .+++|+.|++++|......+. ...+|+.|+|++|.|+.+|..+. .+..+.+.+. ...+..+.
T Consensus 820 ~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~ 896 (1153)
T PLN03210 820 TGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE 896 (1153)
T ss_pred CCC-CccccCEEECCCCCccccccc--cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC
Confidence 655 578888888888744333232 23578899999999999886432 2222222221 12234455
Q ss_pred CcCccCCCCCCC
Q 048561 345 WYNFIPCSKVSP 356 (382)
Q Consensus 345 ~~~~~~c~~~~~ 356 (382)
.+.+..|..+..
T Consensus 897 ~L~l~~C~~L~~ 908 (1153)
T PLN03210 897 TVDFSDCGALTE 908 (1153)
T ss_pred eeecCCCccccc
Confidence 556667776543
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=9.9e-20 Score=148.27 Aligned_cols=164 Identities=26% Similarity=0.445 Sum_probs=113.5
Q ss_pred cCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCC
Q 048561 88 IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLD 166 (382)
Q Consensus 88 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~ 166 (382)
+-++.+++.|.+++|+++ .+|+.++.+.+|+.|++++|+++ .+|..++.+++|+.|++.-|++. .+|..++ ++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 345667777788888887 66777888888888888888887 77777888888888888888777 6676666 67777
Q ss_pred EEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCcc
Q 048561 167 VLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNR 246 (382)
Q Consensus 167 ~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 246 (382)
.|++.+|++.+. .+|..|+.+ ..|+.|++++|.+. .+|..++.+++|+.|.+..|.
T Consensus 106 vldltynnl~e~----------------------~lpgnff~m-~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 106 VLDLTYNNLNEN----------------------SLPGNFFYM-TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND 161 (264)
T ss_pred hhhccccccccc----------------------cCCcchhHH-HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence 777777665431 455556655 66777777777765 455666666777776666666
Q ss_pred CCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhc
Q 048561 247 LTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC 280 (382)
Q Consensus 247 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 280 (382)
+- .+|..++.++.|++|++.+|.++ .+|..++
T Consensus 162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred hh-hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence 65 46666666666666666666666 4444443
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.73 E-value=1.5e-19 Score=164.45 Aligned_cols=257 Identities=19% Similarity=0.152 Sum_probs=192.5
Q ss_pred CCCcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCC-CcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCC
Q 048561 62 DNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANS-NKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKN 140 (382)
Q Consensus 62 ~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 140 (382)
.+.+..+++.|||+.|+|+. +-+++|.++..|..|-+.+ |+|+...-..|++|..|+.|.+.-|++.-...+.|..++
T Consensus 86 aF~~l~~LRrLdLS~N~Is~-I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~ 164 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKNNISF-IAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP 164 (498)
T ss_pred hccchhhhceecccccchhh-cChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence 44556789999999999998 7889999999998888777 899966667899999999999999999877778899999
Q ss_pred CCcEEEecCCCCCCCCCcccc--cCCCCEEeCCCCcCCC------------cCCcCCCC-CcchhhhccCcccccccchh
Q 048561 141 DLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQ------------KLPQNLGS-TPALYLTFANNKFTGSIPRS 205 (382)
Q Consensus 141 ~L~~L~Ls~n~l~~~~p~~~~--l~~L~~L~L~~n~l~~------------~~p~~~~~-~~L~~L~l~~n~l~~~lp~~ 205 (382)
+|..|.+..|.+. .++...+ +..++.+.+..|.+.. ..|..++. .-..-..+.++++...-+..
T Consensus 165 ~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~k 243 (498)
T KOG4237|consen 165 SLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARK 243 (498)
T ss_pred hcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhh
Confidence 9999999999998 7777444 7889999988886421 11111111 11112223333333122222
Q ss_pred HHHhhhhHHHHHhhccccCCCCc-hhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCC
Q 048561 206 IGKLSSTLIEVLFLNNLLTGCLP-YELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDN 284 (382)
Q Consensus 206 l~~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 284 (382)
+......+..-..+.+......| ..|..+++|+.|++++|+|++..+.+|.+...+++|.|..|+|...--..|.++..
T Consensus 244 f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~ 323 (498)
T KOG4237|consen 244 FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSG 323 (498)
T ss_pred hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhcccc
Confidence 22211334444444454554555 34888999999999999999888889999999999999999998655667888999
Q ss_pred CCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCC
Q 048561 285 LVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 285 L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~ 320 (382)
|++|+|++|+|+.+.+ .|..+..|..|+|-.|.+..
T Consensus 324 L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 324 LKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred ceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 9999999999998766 57888889999998888753
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=1.9e-19 Score=146.55 Aligned_cols=165 Identities=24% Similarity=0.376 Sum_probs=138.2
Q ss_pred cCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchh
Q 048561 112 LAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALY 190 (382)
Q Consensus 112 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~ 190 (382)
+-.+.+.+.|.|++|+++ .+|..+..+.+|+.|++++|+++ .+|..+. +++|++|+++.|.+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-------------- 92 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-------------- 92 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--------------
Confidence 334567788899999998 88888999999999999999998 7777776 889999988877763
Q ss_pred hhccCcccccccchhHHHhhhhHHHHHhhccccCC-CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCC
Q 048561 191 LTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG-CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGN 269 (382)
Q Consensus 191 L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 269 (382)
.+|.+|+.+ +.|+.||+.+|++.. .+|..|..++.|+.|.+++|.+. .+|..++.+++|+.|.+..|
T Consensus 93 ----------~lprgfgs~-p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 93 ----------ILPRGFGSF-PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred ----------cCccccCCC-chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence 556666666 778899998888764 47888889999999999999998 78888999999999999999
Q ss_pred cCcccCchhhcCCCCCCEEEcccccCcccCCcccCC
Q 048561 270 LLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKL 305 (382)
Q Consensus 270 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l 305 (382)
.+- .+|..++.+.+|++|.+.+|.++-++|.++.+
T Consensus 161 dll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 161 DLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred chh-hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 888 78888999999999999999998888866544
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.70 E-value=4e-19 Score=166.71 Aligned_cols=251 Identities=24% Similarity=0.216 Sum_probs=135.5
Q ss_pred EEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcc----cCCcccCCCCCCCEEEeecCCCCc------cCcccccCCCC
Q 048561 72 IDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSG----TISPKLAQLPYLYELDISNNKFSG------TFPVAILGKND 141 (382)
Q Consensus 72 L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~~ 141 (382)
|+|+.+.+++......+..+..|+.|+++++.++. .++..+...++|++|+++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 44555555433333444555556666666665532 133344455556666666655541 12233445556
Q ss_pred CcEEEecCCCCCCCCCcccc-cCC---CCEEeCCCCcCCCc----CCcCCCC--CcchhhhccCcccccccchhHHHhh-
Q 048561 142 LSFLDIRFNFFTGSVPPQVF-MQT---LDVLFLNNNNFMQK----LPQNLGS--TPALYLTFANNKFTGSIPRSIGKLS- 210 (382)
Q Consensus 142 L~~L~Ls~n~l~~~~p~~~~-l~~---L~~L~L~~n~l~~~----~p~~~~~--~~L~~L~l~~n~l~~~lp~~l~~l~- 210 (382)
|++|++++|.+.+..+..+. +.. |++|++++|.+++. +...+.. .++++|++++|.+++.....+....
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 66666666666533333222 222 66666666655421 1111111 3456666666665532222222111
Q ss_pred --hhHHHHHhhccccCCC----CchhcccCcCCCccccCCccCCCC----CCcCCCCCCCCCEEeCcCCcCcccCchhhc
Q 048561 211 --STLIEVLFLNNLLTGC----LPYELGFLREARVFDASNNRLTGP----LPCSLGCLEKIERLNLSGNLLYGQVPEVLC 280 (382)
Q Consensus 211 --~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 280 (382)
..|+.|++++|.+.+. ++..+...++|+.|++++|.+++. +...+..+++|++|++++|.+++.....+.
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 3566677777666532 223344556888888888877633 233455667788888888887742222221
Q ss_pred -----CCCCCCEEEcccccCcc--c---CCcccCCCCCCEEEccCCCCCCCC
Q 048561 281 -----ALDNLVNLSLSNNYFTG--V---GPLCRKLIKNGVLDVNRNCIHYLP 322 (382)
Q Consensus 281 -----~l~~L~~L~L~~N~l~~--~---~~~~~~l~~L~~L~L~~N~l~~lp 322 (382)
....|+.|++++|.++. . ...+..+++|+++++++|.++.-+
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 13678888888888762 1 123455677888888888887643
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=9.2e-19 Score=164.25 Aligned_cols=250 Identities=22% Similarity=0.172 Sum_probs=170.3
Q ss_pred ceeEEEcCCCCCCCC---CCccccCCCCCCCEEEcCCCcCcc------cCCcccCCCCCCCEEEeecCCCCccCcccccC
Q 048561 68 ALASIDFNGFELAAP---TLDGFIDQLPDLSLFHANSNKFSG------TISPKLAQLPYLYELDISNNKFSGTFPVAILG 138 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 138 (382)
.++.|+++++.+++. .+...+...+.++.++++++.+.+ .++..+..+++|++|++++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 477888888887542 133345667778888888887652 23445667888888888888887555555554
Q ss_pred CCC---CcEEEecCCCCCCCCC----cccc-c-CCCCEEeCCCCcCCCcCCc----CCCC-CcchhhhccCcccccccch
Q 048561 139 KND---LSFLDIRFNFFTGSVP----PQVF-M-QTLDVLFLNNNNFMQKLPQ----NLGS-TPALYLTFANNKFTGSIPR 204 (382)
Q Consensus 139 l~~---L~~L~Ls~n~l~~~~p----~~~~-l-~~L~~L~L~~n~l~~~~p~----~~~~-~~L~~L~l~~n~l~~~lp~ 204 (382)
+.+ |++|++++|.+++... ..+. + ++|+.|++++|.+++.... .+.. .++++|++++|.+++....
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 444 8888888888763211 1222 4 6888888888888743222 2222 5688888888887743222
Q ss_pred ----hHHHhhhhHHHHHhhccccCCC----CchhcccCcCCCccccCCccCCCCCCcCCC-----CCCCCCEEeCcCCcC
Q 048561 205 ----SIGKLSSTLIEVLFLNNLLTGC----LPYELGFLREARVFDASNNRLTGPLPCSLG-----CLEKIERLNLSGNLL 271 (382)
Q Consensus 205 ----~l~~l~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~L~~N~l 271 (382)
.+... .+|+.|++++|.+.+. +...+..+++|++|++++|.+++.....+. ..+.|++|++++|.+
T Consensus 184 ~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 184 ALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 22222 4788899999887643 234466788999999999998852222111 247999999999999
Q ss_pred cc----cCchhhcCCCCCCEEEcccccCcccCC-----cccCC-CCCCEEEccCCCC
Q 048561 272 YG----QVPEVLCALDNLVNLSLSNNYFTGVGP-----LCRKL-IKNGVLDVNRNCI 318 (382)
Q Consensus 272 ~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~l-~~L~~L~L~~N~l 318 (382)
+. .+...+..+++|+.+++++|.++.... .+... +.|+.+++.+|.+
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 72 234456667899999999999986422 33444 6899999998864
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.64 E-value=1.4e-15 Score=154.45 Aligned_cols=157 Identities=23% Similarity=0.388 Sum_probs=130.4
Q ss_pred hhHHHHHHHHHHHHhCcCCCCCCCCCCCCCCCC-----CcCceeeCCCCCCCcccceeEEEcCCCCCCCCCCccccCCCC
Q 048561 18 RLAAIYPIIQTFKNTITSDPFNITSTWIGSDIC-----KYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLP 92 (382)
Q Consensus 18 ~~~~~~~aL~~~k~~~~~~~~~~~~~W~~~~~C-----~w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~ 92 (382)
....|..||+++|+++. ++.. .+|.+ |+| .|.|+.|...... ....++.|+|+++.+.+ .++..++.++
T Consensus 369 t~~~~~~aL~~~k~~~~-~~~~--~~W~g-~~C~p~~~~w~Gv~C~~~~~~-~~~~v~~L~L~~n~L~g-~ip~~i~~L~ 442 (623)
T PLN03150 369 TLLEEVSALQTLKSSLG-LPLR--FGWNG-DPCVPQQHPWSGADCQFDSTK-GKWFIDGLGLDNQGLRG-FIPNDISKLR 442 (623)
T ss_pred cCchHHHHHHHHHHhcC-Cccc--CCCCC-CCCCCcccccccceeeccCCC-CceEEEEEECCCCCccc-cCCHHHhCCC
Confidence 34567889999999986 3322 47975 455 7999999642211 12258999999999998 5677799999
Q ss_pred CCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc--cCCCCEEeC
Q 048561 93 DLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFL 170 (382)
Q Consensus 93 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--l~~L~~L~L 170 (382)
+|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..++++++|++|+|++|.++|.+|..+. ..++..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999998876 356788999
Q ss_pred CCCcCCCcCC
Q 048561 171 NNNNFMQKLP 180 (382)
Q Consensus 171 ~~n~l~~~~p 180 (382)
.+|......|
T Consensus 523 ~~N~~lc~~p 532 (623)
T PLN03150 523 TDNAGLCGIP 532 (623)
T ss_pred cCCccccCCC
Confidence 9887655444
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.43 E-value=2.5e-15 Score=142.89 Aligned_cols=190 Identities=29% Similarity=0.377 Sum_probs=136.1
Q ss_pred CCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCc
Q 048561 118 LYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANN 196 (382)
Q Consensus 118 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n 196 (382)
-...||+.|++. ++|..++.+..|+.+.|++|-+. .+|..+. +..|++|+++.|+++ .+|..++...|+.|-+++|
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNN 153 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecC
Confidence 356678888887 77777777777888888888877 6666665 777888888888764 6677777777777777777
Q ss_pred ccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCc
Q 048561 197 KFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVP 276 (382)
Q Consensus 197 ~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 276 (382)
+++ .+|..++.+ ..|..||.+.|.+. .+|..+.++.+|+.|.+..|++. .+|..+..+ .|..||++.|++. .+|
T Consensus 154 kl~-~lp~~ig~~-~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 154 KLT-SLPEEIGLL-PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLP 227 (722)
T ss_pred ccc-cCCcccccc-hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecc
Confidence 777 777777743 67777787777776 46667777777887777777777 456555544 3777778888777 777
Q ss_pred hhhcCCCCCCEEEcccccCcccCCc---ccCCCCCCEEEccCC
Q 048561 277 EVLCALDNLVNLSLSNNYFTGVGPL---CRKLIKNGVLDVNRN 316 (382)
Q Consensus 277 ~~~~~l~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L~L~~N 316 (382)
..|..|..|++|-|.+|.+...+.. .+...-.++|+..-.
T Consensus 228 v~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 7777777788888877777765442 244444566665555
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.43 E-value=1.8e-14 Score=137.18 Aligned_cols=213 Identities=26% Similarity=0.347 Sum_probs=174.7
Q ss_pred EEEcCCCCCCCCCCcccc-CCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecC
Q 048561 71 SIDFNGFELAAPTLDGFI-DQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF 149 (382)
Q Consensus 71 ~L~L~~~~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 149 (382)
.|.|++-.+..- +.+.. -.+..-...+++.|++. ++|..+..+..|+.+.|..|.+. .+|..++++..|.+|||+.
T Consensus 54 ~l~Ls~rrlk~f-pr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLKEF-PRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhhcC-CCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhcc
Confidence 345555555441 22222 24556667899999999 89999999999999999999998 8999999999999999999
Q ss_pred CCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCc
Q 048561 150 NFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLP 228 (382)
Q Consensus 150 n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~ 228 (382)
|+++ .+|..++.--|+.|.+++|+++ .+|+.++. .++.+|+.+.|.+. .+|..++.+ .+|+.|.+..|.+. .+|
T Consensus 131 NqlS-~lp~~lC~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l-~slr~l~vrRn~l~-~lp 205 (722)
T KOG0532|consen 131 NQLS-HLPDGLCDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYL-TSLRDLNVRRNHLE-DLP 205 (722)
T ss_pred chhh-cCChhhhcCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhH-HHHHHHHHhhhhhh-hCC
Confidence 9999 8888888667999999999985 67777776 78899999999998 899999998 88999999999988 466
Q ss_pred hhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCC---CCCCEEEccccc
Q 048561 229 YELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCAL---DNLVNLSLSNNY 294 (382)
Q Consensus 229 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~L~~N~ 294 (382)
..+.. -.|..||+++|++. .+|-.|..|..|++|-|.+|.+. ..|..++.. .--++|+..-++
T Consensus 206 ~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 206 EELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 66664 45899999999999 89999999999999999999998 677766533 234667777764
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.36 E-value=1.5e-12 Score=126.03 Aligned_cols=195 Identities=31% Similarity=0.390 Sum_probs=118.3
Q ss_pred EEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCC-CCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCC
Q 048561 96 LFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKN-DLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNN 173 (382)
Q Consensus 96 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n 173 (382)
.+++..+.+... ...+..++.++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|.... ++.|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 355555555322 223444455666666666666 5555555553 6666666666666 4543333 566666666666
Q ss_pred cCCCcCCcCC-CCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCC
Q 048561 174 NFMQKLPQNL-GSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLP 252 (382)
Q Consensus 174 ~l~~~~p~~~-~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 252 (382)
+++.. +... ....++.|++++|++. .+|..+... ..|.++.+++|.+. ..+..+..+.++..+.+.+|++. .++
T Consensus 174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~-~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELL-SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhh-hhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 66432 3222 3355666666666666 666655443 55777777777433 34556677777777777777776 335
Q ss_pred cCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC
Q 048561 253 CSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP 300 (382)
Q Consensus 253 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 300 (382)
..++.++++++|++++|.++ .++. +..+.+++.|++++|.+...++
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 66667777788888888777 4444 6677777788887777765544
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.36 E-value=1.3e-12 Score=126.55 Aligned_cols=196 Identities=29% Similarity=0.384 Sum_probs=162.4
Q ss_pred CEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccC--CCCEEeCCCCcCCCcCCcCCCC-CcchhhhccC
Q 048561 119 YELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQ--TLDVLFLNNNNFMQKLPQNLGS-TPALYLTFAN 195 (382)
Q Consensus 119 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~--~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~ 195 (382)
..++++.|.+. .-...+..++.++.|++.+|.++ .++...... +|+.|++++|.+. .+|..+.. ..|+.|++++
T Consensus 96 ~~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 96 PSLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred ceeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 46889988885 23344566788999999999999 888777743 8999999999986 44444555 8899999999
Q ss_pred cccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccC
Q 048561 196 NKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQV 275 (382)
Q Consensus 196 n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 275 (382)
|++. .+|...+.. ..|+.|++++|++. .+|........|++|.+++|.+. ..+..+..+.++..+.+.+|++. .+
T Consensus 173 N~l~-~l~~~~~~~-~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 173 NDLS-DLPKLLSNL-SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred chhh-hhhhhhhhh-hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence 9999 777766555 78999999999998 56655567778999999999655 46667888899999999999988 55
Q ss_pred chhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCC
Q 048561 276 PEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD 323 (382)
Q Consensus 276 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 323 (382)
+..+..++++++|++++|.++.+.. ++.+.+++.|++++|.+..++.
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 7888899999999999999998876 8889999999999999987643
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=7.7e-13 Score=122.55 Aligned_cols=131 Identities=20% Similarity=0.163 Sum_probs=52.9
Q ss_pred chhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCC--cCCCCCCCCCEEe
Q 048561 188 ALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLP--CSLGCLEKIERLN 265 (382)
Q Consensus 188 L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~ 265 (382)
++.|.++.|+++..-...+...+++|..|++..|...........-+..|+.|||++|.+.. .+ ...+.++.|..|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence 44444444444422222222223445555555543211222223334445555555554431 12 2233444455555
Q ss_pred CcCCcCcccC-chh-----hcCCCCCCEEEcccccCcccCC--cccCCCCCCEEEccCCCCC
Q 048561 266 LSGNLLYGQV-PEV-----LCALDNLVNLSLSNNYFTGVGP--LCRKLIKNGVLDVNRNCIH 319 (382)
Q Consensus 266 L~~N~l~~~~-p~~-----~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~L~~N~l~ 319 (382)
++.+.+...- |+. ....++|+.|++..|+|..... .+..+++|+.|.+..|.|+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 5555444211 111 1223455555555555543221 3344444444444444443
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.24 E-value=6.8e-13 Score=117.56 Aligned_cols=207 Identities=20% Similarity=0.095 Sum_probs=134.9
Q ss_pred CcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCC-CcCCCcCCcCCCC-C
Q 048561 109 SPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNN-NNFMQKLPQNLGS-T 186 (382)
Q Consensus 109 p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~-n~l~~~~p~~~~~-~ 186 (382)
|-.+..+++|+.+.++.+.-. .+-+....-+.|.++.+.+..+. ..|....+..+....-.. .-..|..-..+.. .
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq 284 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVPSLLPETILADPSGSEPSTSNGSALVSADTWQ 284 (490)
T ss_pred ccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-ccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence 334445667777777766543 22222223356777777666554 333322222222221111 1111222222222 3
Q ss_pred cchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeC
Q 048561 187 PALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNL 266 (382)
Q Consensus 187 ~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 266 (382)
.|+++|+++|.|+ .+..++.-+ +.++.|+++.|.+... ..++.+++|+.|||++|.++ .+..+-.++-+.++|.|
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~-Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLA-PKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhhhhhc-cceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 5777888888877 666655544 7788889998888733 34788899999999999888 55666667788899999
Q ss_pred cCCcCcccCchhhcCCCCCCEEEcccccCcccC--CcccCCCCCCEEEccCCCCCCCCCc
Q 048561 267 SGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG--PLCRKLIKNGVLDVNRNCIHYLPDQ 324 (382)
Q Consensus 267 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--~~~~~l~~L~~L~L~~N~l~~lp~~ 324 (382)
++|.|. . -..+..+-+|..||+++|+|.... ..++++|-|+.+.|.+|.|+.+++-
T Consensus 360 a~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 360 AQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hhhhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 999886 2 234667788999999999998754 3688999999999999999998873
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4e-12 Score=117.85 Aligned_cols=207 Identities=22% Similarity=0.200 Sum_probs=141.8
Q ss_pred CCCCCCCEEEcCCCcCcccCC--cccCCCCCCCEEEeecCCCCcc--CcccccCCCCCcEEEecCCCCCCCCCcccc--c
Q 048561 89 DQLPDLSLFHANSNKFSGTIS--PKLAQLPYLYELDISNNKFSGT--FPVAILGKNDLSFLDIRFNFFTGSVPPQVF--M 162 (382)
Q Consensus 89 ~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--l 162 (382)
+++..|+.+.|.++.+. ..+ .....|++++.|||+.|-+... +-.....+++|+.|+|+.|++.--...... +
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45678888888888776 222 3566789999999999877622 223345789999999999988733333222 6
Q ss_pred CCCCEEeCCCCcCCCcCCcCC--CCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCC-chhcccCcCCCc
Q 048561 163 QTLDVLFLNNNNFMQKLPQNL--GSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCL-PYELGFLREARV 239 (382)
Q Consensus 163 ~~L~~L~L~~n~l~~~~p~~~--~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~ 239 (382)
++|+.|.+++|.++...-..+ ...+++.|++.+|.....-......+ +.|++|+|++|.+.... -...+.++.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~-~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL-QTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh-hHHhhccccCCcccccccccccccccchhh
Confidence 889999999998874322222 22678889998884221222223333 67999999998876332 234678899999
Q ss_pred cccCCccCCCC-CCcC-----CCCCCCCCEEeCcCCcCcccCc--hhhcCCCCCCEEEcccccCccc
Q 048561 240 FDASNNRLTGP-LPCS-----LGCLEKIERLNLSGNLLYGQVP--EVLCALDNLVNLSLSNNYFTGV 298 (382)
Q Consensus 240 L~Ls~n~l~~~-~p~~-----~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~ 298 (382)
|+++.+.+... .|+. ...+++|++|++..|++. ..+ ..+..+.+|+.|.+-.|.++..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccccc
Confidence 99999988743 2222 245789999999999996 332 3455667888888888888753
No 31
>PLN03150 hypothetical protein; Provisional
Probab=99.13 E-value=7.1e-11 Score=120.25 Aligned_cols=90 Identities=26% Similarity=0.493 Sum_probs=50.9
Q ss_pred CCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCC
Q 048561 94 LSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNN 172 (382)
Q Consensus 94 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~ 172 (382)
++.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..+..+++|+.|+|++|.++|.+|..+. +++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44555555555555555555555555555555555555555555555555555555555555555444 55555555555
Q ss_pred CcCCCcCCcCC
Q 048561 173 NNFMQKLPQNL 183 (382)
Q Consensus 173 n~l~~~~p~~~ 183 (382)
|.+++.+|..+
T Consensus 500 N~l~g~iP~~l 510 (623)
T PLN03150 500 NSLSGRVPAAL 510 (623)
T ss_pred CcccccCChHH
Confidence 55555555444
No 32
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.05 E-value=9.5e-11 Score=114.03 Aligned_cols=241 Identities=21% Similarity=0.192 Sum_probs=166.8
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
..+..+++..|.+.. ....+..+.+|+.|++.+|.|.. +...+..+++|++|++++|.|+... .+..++.|+.|+
T Consensus 72 ~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchhhhhh--hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 345666677777764 23446778899999999999884 3333777899999999999998432 366677799999
Q ss_pred ecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCc-CCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561 147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQ-NLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG 225 (382)
Q Consensus 147 Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~-~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~ 225 (382)
+++|.+. .+...-.+..|+.+++++|.+...-+. .-...+++.+.+.+|.+.... .+... ..+..+++..|.++.
T Consensus 147 l~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~-~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 147 LSGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE--GLDLL-KKLVLLSLLDNKISK 222 (414)
T ss_pred eccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc--chHHH-HHHHHhhccccccee
Confidence 9999988 666655588899999999988755442 123377888889888876222 22222 456667888887763
Q ss_pred CCchhcccCc--CCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCccc---CC
Q 048561 226 CLPYELGFLR--EARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV---GP 300 (382)
Q Consensus 226 ~~~~~~~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~~ 300 (382)
.-+ +..+. .|+.+++++|.+. ..+..+..+..+..|++..|.+... ..+.....+..+....|.+... ..
T Consensus 223 ~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (414)
T KOG0531|consen 223 LEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQ 297 (414)
T ss_pred ccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhc
Confidence 322 22233 3888999999888 3435666778888999998888632 2344556677777778876632 11
Q ss_pred --cccCCCCCCEEEccCCCCCCC
Q 048561 301 --LCRKLIKNGVLDVNRNCIHYL 321 (382)
Q Consensus 301 --~~~~l~~L~~L~L~~N~l~~l 321 (382)
.....+.+..+.+.+|.+...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 298 EYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred cccccccccccccccccCccccc
Confidence 256667788888888887763
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=7.1e-11 Score=104.90 Aligned_cols=199 Identities=22% Similarity=0.207 Sum_probs=135.7
Q ss_pred CcccccCCCCCcEEEecCCCCCCCCCccc-ccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhcc-CcccccccchhHHHh
Q 048561 132 FPVAILGKNDLSFLDIRFNFFTGSVPPQV-FMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFA-NNKFTGSIPRSIGKL 209 (382)
Q Consensus 132 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~-~n~l~~~lp~~l~~l 209 (382)
+|-.+..+.+|..+.++++.-. .|-... ..|.|+.+.+.+..+. ..|.-+....+...... ..-..|.+-..+...
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~-~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ-DVPSLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc-ccccccchhhhcCccCCCCCccCCceEEecchH
Confidence 3444555678888888888755 333333 2578888887665432 12211111111111111 111223333333333
Q ss_pred hhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEE
Q 048561 210 SSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLS 289 (382)
Q Consensus 210 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 289 (382)
+.|+++|++.|.++ .+..+..-+++++.|+++.|.|. .+. .+..+++|+.|||++|.++ .+..|-..+-++++|.
T Consensus 284 -q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 284 -QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred -hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 67999999999998 56677888999999999999998 333 3788999999999999998 7778888889999999
Q ss_pred cccccCcccCCcccCCCCCCEEEccCCCCCCCCCc--ccccch---hhhccCCC
Q 048561 290 LSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQ--RSTHEC---ALFFLQPR 338 (382)
Q Consensus 290 L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~--~~~~~~---~~~~~np~ 338 (382)
|++|.|... ..++.+-+|..||+++|+|..+.+. +..+.| ..+.+||.
T Consensus 359 La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 359 LAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 999998764 3567788899999999999987653 223334 34456664
No 34
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.98 E-value=9.1e-11 Score=114.16 Aligned_cols=220 Identities=24% Similarity=0.254 Sum_probs=160.7
Q ss_pred CCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEE
Q 048561 89 DQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVL 168 (382)
Q Consensus 89 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L 168 (382)
..+..++.+.+..|.++ .+-..+..+++|+.|++.+|+|. .+...+..+++|++|++++|.|+ .+...-.+..|+.|
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-cccchhhccchhhh
Confidence 35677778888888887 34445788999999999999998 55544778999999999999999 66666667789999
Q ss_pred eCCCCcCCCcCCcCCCCCcchhhhccCcccccccchh-HHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccC
Q 048561 169 FLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRS-IGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRL 247 (382)
Q Consensus 169 ~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~-l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 247 (382)
++.+|.+... ...-....++.+++++|.+.. +... ...+ ..+..+++.+|.+.. ...+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~-~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~~-~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI-SGLESLKSLKLLDLSYNRIVD-IENDELSEL-ISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc-cCCccchhhhcccCCcchhhh-hhhhhhhhc-cchHHHhccCCchhc--ccchHHHHHHHHhhcccccc
Confidence 9999998642 222224778899999999883 3331 3444 679999999998863 23445556666678889988
Q ss_pred CCCCCcCCCCCCC--CCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCC
Q 048561 248 TGPLPCSLGCLEK--IERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 248 ~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~ 320 (382)
+..-+ +..+.. |+.+++++|.+. .++..+..+..+..+++.+|++.... .+.....+..+....|.+..
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~ 291 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLAL 291 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc-cccccchHHHhccCcchhcc
Confidence 73322 222333 899999999998 55466777888999999999887653 23445566666777777663
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.98 E-value=2.5e-11 Score=109.75 Aligned_cols=242 Identities=19% Similarity=0.164 Sum_probs=134.8
Q ss_pred ceeEEEcCCCCCCCC---CCccccCCCCCCCEEEcCCC---cCcccCCcc-------cCCCCCCCEEEeecCCCCccCcc
Q 048561 68 ALASIDFNGFELAAP---TLDGFIDQLPDLSLFHANSN---KFSGTISPK-------LAQLPYLYELDISNNKFSGTFPV 134 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~---~~~~~~~~l~~L~~L~l~~n---~l~~~~p~~-------l~~l~~L~~L~Ls~n~l~~~~p~ 134 (382)
+++.++|++|.+... .+...+.+.++|+..++++- +....+|++ +..+++|++|+||+|.+.-..+.
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 567777777776541 12233455566776666552 222234432 33456677777777766532222
Q ss_pred ----cccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhH---
Q 048561 135 ----AILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSI--- 206 (382)
Q Consensus 135 ----~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l--- 206 (382)
-+..+..|++|+|.+|.+. ......--..|.+|. .+ ...+. .+|+.+..+.|++...-...+
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~--~~-------kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELA--VN-------KKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHH--HH-------hccCCCcceEEEEeeccccccccHHHHHHH
Confidence 2345566777777777654 211111000011110 00 00011 234444444444331111111
Q ss_pred HHhhhhHHHHHhhccccCC----CCchhcccCcCCCccccCCccCCCC----CCcCCCCCCCCCEEeCcCCcCcccCchh
Q 048561 207 GKLSSTLIEVLFLNNLLTG----CLPYELGFLREARVFDASNNRLTGP----LPCSLGCLEKIERLNLSGNLLYGQVPEV 278 (382)
Q Consensus 207 ~~l~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 278 (382)
.+-.+.|..+.+..|.+.. .+...+.++++|+.|||.+|.++.. +...+..+++|+.|++++|.+...-..+
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 1111345555555555431 1234678899999999999988732 3345667789999999999887543332
Q ss_pred h-----cCCCCCCEEEcccccCcccC-----CcccCCCCCCEEEccCCCCC
Q 048561 279 L-----CALDNLVNLSLSNNYFTGVG-----PLCRKLIKNGVLDVNRNCIH 319 (382)
Q Consensus 279 ~-----~~l~~L~~L~L~~N~l~~~~-----~~~~~l~~L~~L~L~~N~l~ 319 (382)
+ ...++|+.|.+.+|.|+... ..+...+.|..|+|++|++.
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 2 24689999999999998531 13566889999999999994
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.94 E-value=7.6e-10 Score=115.55 Aligned_cols=251 Identities=17% Similarity=0.137 Sum_probs=157.7
Q ss_pred cceeEEEcCCCC--CCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcE
Q 048561 67 IALASIDFNGFE--LAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144 (382)
Q Consensus 67 ~~l~~L~L~~~~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 144 (382)
..+++|-+.+|. +.. +..++|..++.|++||+++|.--+.+|..++.|-+||+|++++..+. .+|..+.++..|.+
T Consensus 545 ~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 358888888886 343 46667889999999999998766799999999999999999999998 99999999999999
Q ss_pred EEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccc----cchhHHHhhhhHHHHHh
Q 048561 145 LDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGS----IPRSIGKLSSTLIEVLF 218 (382)
Q Consensus 145 L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~----lp~~l~~l~~~L~~L~l 218 (382)
|++.++.....++.... +.+|++|.+..-..... ...+.. ..++.|..-....... -......+....+.+.+
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~-~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~ 701 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSND-KLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSI 701 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccc-hhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhh
Confidence 99999887656666665 89999999866541110 000111 2233322222221111 01112222233334444
Q ss_pred hccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCC------CCCCCEEeCcCCcCcccCchhhcCCCCCCEEEccc
Q 048561 219 LNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGC------LEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSN 292 (382)
Q Consensus 219 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 292 (382)
..+.. ......+..+.+|+.|.+.++.+.......... ++++..+...++.-- ..+.+....++|+.|.+..
T Consensus 702 ~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~ 779 (889)
T KOG4658|consen 702 EGCSK-RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVS 779 (889)
T ss_pred ccccc-ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEec
Confidence 33222 234556788899999999988876433322221 112222222222211 2344455568999999998
Q ss_pred ccCcc-cCCcccCCCCCCEEEccCCCCCCCC
Q 048561 293 NYFTG-VGPLCRKLIKNGVLDVNRNCIHYLP 322 (382)
Q Consensus 293 N~l~~-~~~~~~~l~~L~~L~L~~N~l~~lp 322 (382)
+.... +++....+..++.+.+..+.+.+++
T Consensus 780 ~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~ 810 (889)
T KOG4658|consen 780 CRLLEDIIPKLKALLELKELILPFNKLEGLR 810 (889)
T ss_pred ccccccCCCHHHHhhhcccEEecccccccce
Confidence 86544 5555556666666667777766653
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=7.9e-10 Score=93.47 Aligned_cols=107 Identities=32% Similarity=0.342 Sum_probs=43.7
Q ss_pred hhHHHHHhhccccCCCCchhcc-cCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhh-cCCCCCCEE
Q 048561 211 STLIEVLFLNNLLTGCLPYELG-FLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVL-CALDNLVNL 288 (382)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L 288 (382)
..+++|++.+|.+... ..++ .+.+|+.|++++|.|+. +. .+..++.|++|++++|.|+ .+...+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 3578888888888742 2344 57889999999999984 43 5778899999999999998 454444 357899999
Q ss_pred EcccccCcccCC--cccCCCCCCEEEccCCCCCCCC
Q 048561 289 SLSNNYFTGVGP--LCRKLIKNGVLDVNRNCIHYLP 322 (382)
Q Consensus 289 ~L~~N~l~~~~~--~~~~l~~L~~L~L~~N~l~~lp 322 (382)
++++|+|..... .+..+++|+.|+|.+|+++.-+
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence 999999987543 5778999999999999988654
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.89 E-value=1.6e-09 Score=75.38 Aligned_cols=61 Identities=30% Similarity=0.457 Sum_probs=42.8
Q ss_pred CCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCC
Q 048561 92 PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFF 152 (382)
Q Consensus 92 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 152 (382)
++|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777755555677777777777777777755556677777777777777764
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=1.8e-09 Score=91.28 Aligned_cols=101 Identities=23% Similarity=0.376 Sum_probs=24.9
Q ss_pred ceeEEEcCCCCCCCCCCccccC-CCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccc-cCCCCCcEE
Q 048561 68 ALASIDFNGFELAAPTLDGFID-QLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAI-LGKNDLSFL 145 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L 145 (382)
.++.|+|.+|+|+. +.. ++ .+.+|+.|++++|.++ .+. .+..++.|++|++++|+|+ .+...+ ..+++|++|
T Consensus 20 ~~~~L~L~~n~I~~--Ie~-L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQIST--IEN-LGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S---TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccc--ccc-hhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 35556666666654 222 33 3556666666666665 222 3555566666666666665 333223 235666666
Q ss_pred EecCCCCCCCCCccc---ccCCCCEEeCCCCcC
Q 048561 146 DIRFNFFTGSVPPQV---FMQTLDVLFLNNNNF 175 (382)
Q Consensus 146 ~Ls~n~l~~~~p~~~---~l~~L~~L~L~~n~l 175 (382)
++++|+|. .+.+.. .+++|++|++.+|.+
T Consensus 94 ~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 94 YLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred ECcCCcCC-ChHHhHHHHcCCCcceeeccCCcc
Confidence 66666655 222211 145556666555554
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.82 E-value=4.1e-10 Score=110.59 Aligned_cols=197 Identities=21% Similarity=0.183 Sum_probs=103.2
Q ss_pred CCCCEEEeecCCCCccC-cccccCCCCCcEEEecCCCCCCCCCccccc-CCCCEEeCCCCcCC----------CcCCcCC
Q 048561 116 PYLYELDISNNKFSGTF-PVAILGKNDLSFLDIRFNFFTGSVPPQVFM-QTLDVLFLNNNNFM----------QKLPQNL 183 (382)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l-~~L~~L~L~~n~l~----------~~~p~~~ 183 (382)
++++.|.+-.-.=.+.. |-.|..+..|++|.|.++.+. ..-....+ ..|++|... |.+. |.+-.++
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~-~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~ 161 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLS-TAKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSP 161 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchh-hhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccch
Confidence 44444444333222222 556677788888888888876 32222222 235554332 2111 1111111
Q ss_pred CCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCc-CCCCCCCCC
Q 048561 184 GSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPC-SLGCLEKIE 262 (382)
Q Consensus 184 ~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~ 262 (382)
.-.+|...++++|.+. .+..++.-+ +.++.|+|+.|+++... .+..+++|++|||+.|.+. .+|. ...++ +|+
T Consensus 162 ~Wn~L~~a~fsyN~L~-~mD~SLqll-~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~ 235 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLV-LMDESLQLL-PALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQ 235 (1096)
T ss_pred hhhhHhhhhcchhhHH-hHHHHHHHH-HHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hhe
Confidence 1134556666666665 444444433 56667777777665332 5666666777777777666 3332 12222 366
Q ss_pred EEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC--cccCCCCCCEEEccCCCCCCCC
Q 048561 263 RLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP--LCRKLIKNGVLDVNRNCIHYLP 322 (382)
Q Consensus 263 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~L~~N~l~~lp 322 (382)
.|.+++|.++ .+ ..+.++.+|+.||+++|-|.+... -++.+..|+.|.|.+|.+..-|
T Consensus 236 ~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 236 LLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred eeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 6666666665 22 234556666666666666655322 2445556666666666665544
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.78 E-value=4.8e-10 Score=101.55 Aligned_cols=222 Identities=22% Similarity=0.235 Sum_probs=134.4
Q ss_pred cCCCCCCCEEEcCCCcCcc----cCCcccCCCCCCCEEEeecC---CCCccCccc-------ccCCCCCcEEEecCCCCC
Q 048561 88 IDQLPDLSLFHANSNKFSG----TISPKLAQLPYLYELDISNN---KFSGTFPVA-------ILGKNDLSFLDIRFNFFT 153 (382)
Q Consensus 88 ~~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~Ls~n---~l~~~~p~~-------l~~l~~L~~L~Ls~n~l~ 153 (382)
+..+..++.+++++|.+.. .+...+.+.++|+..++++- ++...+|.. +-.+++|++|+||.|.|.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4455677777777776642 23344556667777777652 222233332 234456777777777665
Q ss_pred CCCCcccc-----cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC--
Q 048561 154 GSVPPQVF-----MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC-- 226 (382)
Q Consensus 154 ~~~p~~~~-----l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~-- 226 (382)
-.-+..+. ...|++|.|.+|.+...-...++ ..|.++. .++.. + . ...|+++...+|++-..
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~-~al~~l~--~~kk~---~----~-~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG-RALFELA--VNKKA---A----S-KPKLRVFICGRNRLENGGA 174 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH-HHHHHHH--HHhcc---C----C-CcceEEEEeeccccccccH
Confidence 33333222 34566666666654211110000 1222222 22111 0 0 24677788888887532
Q ss_pred --CchhcccCcCCCccccCCccCCCC----CCcCCCCCCCCCEEeCcCCcCccc----CchhhcCCCCCCEEEcccccCc
Q 048561 227 --LPYELGFLREARVFDASNNRLTGP----LPCSLGCLEKIERLNLSGNLLYGQ----VPEVLCALDNLVNLSLSNNYFT 296 (382)
Q Consensus 227 --~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 296 (382)
+...|...+.|+.+.++.|.|... +...+..+++|+.|||.+|-|+.. +...+..+++|+.|++++|.+.
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 223456678899999999988632 224567889999999999998742 3456677889999999999987
Q ss_pred ccCC-----c-ccCCCCCCEEEccCCCCCC
Q 048561 297 GVGP-----L-CRKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 297 ~~~~-----~-~~~l~~L~~L~L~~N~l~~ 320 (382)
.... . -...+.|+.|.+.+|.|+.
T Consensus 255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 255 NEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred cccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 6432 1 2457899999999999886
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=3.1e-09 Score=73.94 Aligned_cols=58 Identities=36% Similarity=0.462 Sum_probs=29.4
Q ss_pred CCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCC
Q 048561 260 KIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNC 317 (382)
Q Consensus 260 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~ 317 (382)
+|++|++++|+|+...+.+|..+++|++|++++|+++.+.+ .+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555553333445555555555555555555433 34555555555555554
No 43
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.68 E-value=3e-08 Score=63.45 Aligned_cols=39 Identities=28% Similarity=0.625 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCcCCCCCCCCCCCC---CCCCCcCceeeC
Q 048561 20 AAIYPIIQTFKNTITSDPFNITSTWIG---SDICKYKGFYCG 58 (382)
Q Consensus 20 ~~~~~aL~~~k~~~~~~~~~~~~~W~~---~~~C~w~gv~c~ 58 (382)
..|++||++||+++..++...+.+|.. .++|+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 468899999999999778889999984 589999999995
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.66 E-value=1.2e-09 Score=107.41 Aligned_cols=233 Identities=21% Similarity=0.174 Sum_probs=147.4
Q ss_pred CCCCcEEEecCCCCCCCC-Ccccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccc----------cccchh
Q 048561 139 KNDLSFLDIRFNFFTGSV-PPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFT----------GSIPRS 205 (382)
Q Consensus 139 l~~L~~L~Ls~n~l~~~~-p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~----------~~lp~~ 205 (382)
+++++.|.+-.-.-.+.. |-.++ +.+|++|.+.++.+.. .-+-... ..|++|..++. +. |.+..+
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNS 160 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccc
Confidence 344555554433322222 44444 7899999999998853 1111111 23333332221 11 122222
Q ss_pred HHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCC
Q 048561 206 IGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNL 285 (382)
Q Consensus 206 l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 285 (382)
+.. ..|...+.+.|.+. ....++.-++.|+.|+|++|+++.. +.+..+++|++|||++|.++ .+|..-..-..|
T Consensus 161 ~~W--n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L 234 (1096)
T KOG1859|consen 161 PVW--NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKL 234 (1096)
T ss_pred hhh--hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhh
Confidence 222 46888899999987 5667888899999999999999843 26778999999999999998 666432222349
Q ss_pred CEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCCccc-----ccchhhhccCCCCCCC------CCCc--------
Q 048561 286 VNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRS-----THECALFFLQPRFCFY------PSWY-------- 346 (382)
Q Consensus 286 ~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~-----~~~~~~~~~np~~c~~------~~~~-------- 346 (382)
+.|.+++|.++... .+.++.+|+.||+++|-|.+..+..+ .+..+-+.|||.-|.. ..++
T Consensus 235 ~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~hRaataqYl~~~~a~~~ 313 (1096)
T KOG1859|consen 235 QLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPWHRAATAQYLHKNSAPVK 313 (1096)
T ss_pred eeeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHHHHHHHHhHhccccCCcc
Confidence 99999999998754 56788999999999999998765332 3445567799988832 1111
Q ss_pred ---CccCCCCCCCCCCCCCCCCCCCCCcccccccCCC
Q 048561 347 ---NFIPCSKVSPWSHPHSPSRTNSSSVAYNALVRNR 380 (382)
Q Consensus 347 ---~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (382)
+-..-.+++.|-+....++.++.|..|..-.|.|
T Consensus 314 f~LDgk~l~~~efwk~~s~~~hr~~~p~s~~~~S~a~ 350 (1096)
T KOG1859|consen 314 FKLDGKALGGREFWKRQSGVSHRSSRPASYGFYSPAR 350 (1096)
T ss_pred eEecceeccchhhhhhhhheecCCCCCCCCCCCCchh
Confidence 1112234455655555555555555555555444
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.53 E-value=4.1e-08 Score=102.78 Aligned_cols=245 Identities=18% Similarity=0.144 Sum_probs=154.1
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCc--CcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNK--FSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 145 (382)
.++...+-+|++.. .... ...+.|++|-+.+|. +.......|..++.|+.|||++|.--+.+|..++.+-+|++|
T Consensus 524 ~~rr~s~~~~~~~~--~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEH--IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchhh--ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 56777777776654 2222 244579999999986 553444558889999999999987777999999999999999
Q ss_pred EecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccc--cccchhHHHhhhhHHHHHhhcc
Q 048561 146 DIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFT--GSIPRSIGKLSSTLIEVLFLNN 221 (382)
Q Consensus 146 ~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~--~~lp~~l~~l~~~L~~L~l~~n 221 (382)
+++++.+. .+|..+. +..|.+|++..+.....++..... .+|++|.+...... ...-..+.++ ..|+.+.....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~L-e~L~~ls~~~~ 678 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENL-EHLENLSITIS 678 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcc-cchhhheeecc
Confidence 99999999 8998887 899999999988776666665553 77888877655422 1222223332 34444444222
Q ss_pred ccCCCCchhcccCcCCC----ccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCC------CCCCEEEcc
Q 048561 222 LLTGCLPYELGFLREAR----VFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCAL------DNLVNLSLS 291 (382)
Q Consensus 222 ~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l------~~L~~L~L~ 291 (382)
.. .+-..+..+..|. .+.+.++... .....+..+.+|+.|.+.++.+......+.... +++..+...
T Consensus 679 s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~ 755 (889)
T KOG4658|consen 679 SV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSIL 755 (889)
T ss_pred hh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhh
Confidence 21 0111122333332 3333333322 455667788999999999998864333332221 223333333
Q ss_pred cccCcccCCcccCCCCCCEEEccCCCCCC
Q 048561 292 NNYFTGVGPLCRKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 292 ~N~l~~~~~~~~~l~~L~~L~L~~N~l~~ 320 (382)
++..-..+....-.++|+.|.+.+....+
T Consensus 756 ~~~~~r~l~~~~f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 756 NCHMLRDLTWLLFAPHLTSLSLVSCRLLE 784 (889)
T ss_pred ccccccccchhhccCcccEEEEecccccc
Confidence 33222222223456799999999876554
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.29 E-value=2.6e-08 Score=87.62 Aligned_cols=235 Identities=21% Similarity=0.212 Sum_probs=133.5
Q ss_pred ceeEEEcCCCCCCCC---CCccccCCCCCCCEEEcCCCc---CcccCC-------cccCCCCCCCEEEeecCCCCccCcc
Q 048561 68 ALASIDFNGFELAAP---TLDGFIDQLPDLSLFHANSNK---FSGTIS-------PKLAQLPYLYELDISNNKFSGTFPV 134 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~---~~~~~~~~l~~L~~L~l~~n~---l~~~~p-------~~l~~l~~L~~L~Ls~n~l~~~~p~ 134 (382)
.++.++|+||.|... -+...+++-.+|+..+++.-. ....++ +++..|+.|+..+||+|.+....|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 577888888887652 122334556677777766531 112222 2455677888888888877655544
Q ss_pred c----ccCCCCCcEEEecCCCCCCCCCc-ccc--------------cCCCCEEeCCCCcCCCcCCcC----CCC-Ccchh
Q 048561 135 A----ILGKNDLSFLDIRFNFFTGSVPP-QVF--------------MQTLDVLFLNNNNFMQKLPQN----LGS-TPALY 190 (382)
Q Consensus 135 ~----l~~l~~L~~L~Ls~n~l~~~~p~-~~~--------------l~~L~~L~L~~n~l~~~~p~~----~~~-~~L~~ 190 (382)
. +++-+.|++|.+++|.+. .+.. .++ .|.|+.+....|.+......- +.. ..+++
T Consensus 111 ~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 111 ELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred HHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 3 445677888888877765 2221 111 255666666666553211100 000 12333
Q ss_pred hhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCC----CCcCCCCCCCCCEEeC
Q 048561 191 LTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGP----LPCSLGCLEKIERLNL 266 (382)
Q Consensus 191 L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L 266 (382)
+.+..|.|. |.++..+ .-..+..+.+|+.||+++|.++-. +...+..++.|+.|++
T Consensus 190 vki~qNgIr---pegv~~L-----------------~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l 249 (388)
T COG5238 190 VKIQQNGIR---PEGVTML-----------------AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL 249 (388)
T ss_pred EEeeecCcC---cchhHHH-----------------HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccc
Confidence 334444333 2211111 111235567888899988887632 2233455677888998
Q ss_pred cCCcCcccCchhh------cCCCCCCEEEcccccCccc-CC-----c--ccCCCCCCEEEccCCCCCCCCC
Q 048561 267 SGNLLYGQVPEVL------CALDNLVNLSLSNNYFTGV-GP-----L--CRKLIKNGVLDVNRNCIHYLPD 323 (382)
Q Consensus 267 ~~N~l~~~~p~~~------~~l~~L~~L~L~~N~l~~~-~~-----~--~~~l~~L~~L~L~~N~l~~lp~ 323 (382)
.+|-++..-...+ ...++|..|-..+|.+.+. +. . -..++-|..|.+.+|+|.+..+
T Consensus 250 nDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~d 320 (388)
T COG5238 250 NDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELAD 320 (388)
T ss_pred cchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHHH
Confidence 8888774333222 1347888888888877652 11 1 2567778888888999887654
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=9.2e-07 Score=79.03 Aligned_cols=106 Identities=20% Similarity=0.199 Sum_probs=57.3
Q ss_pred eeEEEcCCCCCCCCCCcccc-CCCCCCCEEEcCCCcCcc--cCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561 69 LASIDFNGFELAAPTLDGFI-DQLPDLSLFHANSNKFSG--TISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145 (382)
Q Consensus 69 l~~L~L~~~~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 145 (382)
++.+.+.+..|........| ...++++.+||.+|.|.. .+-.-+.++|.|++|+|+.|.+...+-..-..+.+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 33445555555432111112 245677777777777752 233334567777777777777763322111244577777
Q ss_pred EecCCCCCCCCCccc-c-cCCCCEEeCCCCc
Q 048561 146 DIRFNFFTGSVPPQV-F-MQTLDVLFLNNNN 174 (382)
Q Consensus 146 ~Ls~n~l~~~~p~~~-~-l~~L~~L~L~~n~ 174 (382)
.|.+..+...--..+ . +|.++.|+++.|.
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 777776652222111 1 5666777777664
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.2e-08 Score=88.15 Aligned_cols=173 Identities=17% Similarity=0.081 Sum_probs=91.2
Q ss_pred CCCEEEeecCCCCc-cCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcC----CCC-Ccch
Q 048561 117 YLYELDISNNKFSG-TFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQN----LGS-TPAL 189 (382)
Q Consensus 117 ~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~----~~~-~~L~ 189 (382)
.|++|||++..|+. .+...+..+.+|+.|.+.++++...+-..+. ...|+.|+++.+. |.-..+ +.. ..|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s--G~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS--GFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--ccchhHHHHHHHhhhhHh
Confidence 36666666655541 1222344556666666666666544433333 4556666666542 111111 111 3455
Q ss_pred hhhccCcccccc-cchhHHHhhhhHHHHHhhccccC---CCCchhcccCcCCCccccCCcc-CCCCCCcCCCCCCCCCEE
Q 048561 190 YLTFANNKFTGS-IPRSIGKLSSTLIEVLFLNNLLT---GCLPYELGFLREARVFDASNNR-LTGPLPCSLGCLEKIERL 264 (382)
Q Consensus 190 ~L~l~~n~l~~~-lp~~l~~l~~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L 264 (382)
+|+++.+.+... +...+.....+|+.|++++..-. ..+..-...+++|..|||++|. ++......|.+++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 555655554322 22233444456777777765422 1111223567788888888764 333233345567778888
Q ss_pred eCcCCcCcccCchhh---cCCCCCCEEEcccc
Q 048561 265 NLSGNLLYGQVPEVL---CALDNLVNLSLSNN 293 (382)
Q Consensus 265 ~L~~N~l~~~~p~~~---~~l~~L~~L~L~~N 293 (382)
.++.|.. ++|+.+ ...++|.+|++.++
T Consensus 344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 8877763 455543 34567777777665
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.19 E-value=8.9e-07 Score=56.79 Aligned_cols=39 Identities=33% Similarity=0.374 Sum_probs=21.7
Q ss_pred CCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCC
Q 048561 284 NLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLP 322 (382)
Q Consensus 284 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp 322 (382)
+|++|++++|+|+.+++.+.++++|+.|++++|+|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455666666666655544556666666666666665544
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.15 E-value=8.5e-08 Score=76.05 Aligned_cols=111 Identities=24% Similarity=0.193 Sum_probs=89.0
Q ss_pred hhHHHHHhhccccCCC--CchhcccCcCCCccccCCccCCCCCCcCCC-CCCCCCEEeCcCCcCcccCchhhcCCCCCCE
Q 048561 211 STLIEVLFLNNLLTGC--LPYELGFLREARVFDASNNRLTGPLPCSLG-CLEKIERLNLSGNLLYGQVPEVLCALDNLVN 287 (382)
Q Consensus 211 ~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 287 (382)
..+..++++++.+... .+..+.....|+..+|++|.+. .+|..|. .++.++.|++++|.|+ .+|..+..++.|+.
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3566677777776532 1233445566777899999999 4555554 5678999999999999 88988999999999
Q ss_pred EEcccccCcccCCcccCCCCCCEEEccCCCCCCCCC
Q 048561 288 LSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD 323 (382)
Q Consensus 288 L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 323 (382)
|+++.|.+...+..+..+.++-.||..+|.+..+|-
T Consensus 105 lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 105 LNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred cccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 999999999887777779999999999999999884
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=2.6e-06 Score=54.64 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=19.1
Q ss_pred CCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCC
Q 048561 117 YLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFT 153 (382)
Q Consensus 117 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 153 (382)
+|++|++++|+|+ .+|..+.+|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 44444555555555555555555
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.10 E-value=2.7e-07 Score=73.22 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=53.0
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
+++.++|++|.+.. .++.+-..++.++.|++++|.+. .+|..++.++.|+.|++++|.+. ..|..+..+.+|-.|+.
T Consensus 54 el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 45556666666654 23333334556666666666666 45656666666666666666665 55555555666666666
Q ss_pred cCCCCCCCCCcccc
Q 048561 148 RFNFFTGSVPPQVF 161 (382)
Q Consensus 148 s~n~l~~~~p~~~~ 161 (382)
.+|.+. .+|...+
T Consensus 131 ~~na~~-eid~dl~ 143 (177)
T KOG4579|consen 131 PENARA-EIDVDLF 143 (177)
T ss_pred CCCccc-cCcHHHh
Confidence 666655 5555544
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=7.4e-07 Score=79.63 Aligned_cols=219 Identities=18% Similarity=0.175 Sum_probs=129.6
Q ss_pred CCCEEEcCCCcCcccCC-cccC-CCCCCCEEEeecCCCCc--cCcccccCCCCCcEEEecCCCCCCCCCcc-cccCCCCE
Q 048561 93 DLSLFHANSNKFSGTIS-PKLA-QLPYLYELDISNNKFSG--TFPVAILGKNDLSFLDIRFNFFTGSVPPQ-VFMQTLDV 167 (382)
Q Consensus 93 ~L~~L~l~~n~l~~~~p-~~l~-~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~l~~L~~ 167 (382)
.+..|.+.++.|..... ..|+ .+..++.|||.+|.|+. .+-..+.+||.|++|+|+.|++...|... ....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 44456666665542111 1222 35789999999999983 34445678999999999999988544433 33678999
Q ss_pred EeCCCCcCCCcCCcCCCC--CcchhhhccCccccc--ccchhHHHhh---------hhHHHHHhhccccCCCCchhcccC
Q 048561 168 LFLNNNNFMQKLPQNLGS--TPALYLTFANNKFTG--SIPRSIGKLS---------STLIEVLFLNNLLTGCLPYELGFL 234 (382)
Q Consensus 168 L~L~~n~l~~~~p~~~~~--~~L~~L~l~~n~l~~--~lp~~l~~l~---------~~L~~L~l~~n~l~~~~~~~~~~l 234 (382)
|.|.+..+....-.++.. ..+++|+++.|.+.- .-..++.... ..+..+..+-|++.. -+
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r-------~F 198 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR-------IF 198 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh-------hc
Confidence 999998876543333322 556677777773220 0001111111 233344444444332 24
Q ss_pred cCCCccccCCccCCCC-CCcCCCCCCCCCEEeCcCCcCcccC-chhhcCCCCCCEEEcccccCcccCC-------cccCC
Q 048561 235 REARVFDASNNRLTGP-LPCSLGCLEKIERLNLSGNLLYGQV-PEVLCALDNLVNLSLSNNYFTGVGP-------LCRKL 305 (382)
Q Consensus 235 ~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~l 305 (382)
+++..+-+..|.+... .-..+..++.+..|+|+.|+|.... -+++.+++.|.-|.+++|.+..... .++.+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL 278 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL 278 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence 4566666666665422 1223445566678888888886322 2456677888888888888765321 25777
Q ss_pred CCCCEEEccCCCCCC
Q 048561 306 IKNGVLDVNRNCIHY 320 (382)
Q Consensus 306 ~~L~~L~L~~N~l~~ 320 (382)
++++.|+ +-.|+.
T Consensus 279 ~~v~vLN--GskIss 291 (418)
T KOG2982|consen 279 TKVQVLN--GSKISS 291 (418)
T ss_pred cceEEec--Ccccch
Confidence 7777765 335544
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.01 E-value=1.3e-06 Score=77.08 Aligned_cols=222 Identities=18% Similarity=0.145 Sum_probs=134.4
Q ss_pred cCCCCCCCEEEcCCCcCccc----CCcccCCCCCCCEEEeecCC---CCccCcc-------cccCCCCCcEEEecCCCCC
Q 048561 88 IDQLPDLSLFHANSNKFSGT----ISPKLAQLPYLYELDISNNK---FSGTFPV-------AILGKNDLSFLDIRFNFFT 153 (382)
Q Consensus 88 ~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~---l~~~~p~-------~l~~l~~L~~L~Ls~n~l~ 153 (382)
+..+..++.++|++|.|... +...+++-.+|+..+++.-. ....+++ .+.++++|+..+||.|.|.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34567888999999988643 33345666788888887632 2222332 3457899999999999988
Q ss_pred CCCCcccc-----cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCc
Q 048561 154 GSVPPQVF-----MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLP 228 (382)
Q Consensus 154 ~~~p~~~~-----l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~ 228 (382)
...|+... ...|++|.|++|.+...-..-++ ..|. .+.+|+-. ++. +.|++.+...|++..-..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig-kal~--~la~nKKa-------a~k-p~Le~vicgrNRlengs~ 174 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG-KALF--HLAYNKKA-------ADK-PKLEVVICGRNRLENGSK 174 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHH-HHHH--HHHHHhhh-------ccC-CCceEEEeccchhccCcH
Confidence 77776543 46789999988876322111111 1111 11222211 111 334555555555432111
Q ss_pred ----hhcccCcCCCccccCCccCCCCCC-----cCCCCCCCCCEEeCcCCcCccc----CchhhcCCCCCCEEEcccccC
Q 048561 229 ----YELGFLREARVFDASNNRLTGPLP-----CSLGCLEKIERLNLSGNLLYGQ----VPEVLCALDNLVNLSLSNNYF 295 (382)
Q Consensus 229 ----~~~~~l~~L~~L~Ls~n~l~~~~p-----~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l 295 (382)
..+..-.+|+.+.+..|.|...-- ..+..+.+|+.||+++|.|+-. +..+++.++.|+.|.+.+|-+
T Consensus 175 ~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 175 ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence 112223578888888888763211 1233568899999999988732 334566778889999999877
Q ss_pred cccCC--cc-----cCCCCCCEEEccCCCCCC
Q 048561 296 TGVGP--LC-----RKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 296 ~~~~~--~~-----~~l~~L~~L~L~~N~l~~ 320 (382)
+.... .+ ...++|..|...+|.+..
T Consensus 255 s~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 255 SNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred ccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 65322 11 346778888888887654
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=1.8e-05 Score=75.25 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=43.3
Q ss_pred cCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCC-CCCCCCCcccccCCCC
Q 048561 88 IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN-FFTGSVPPQVFMQTLD 166 (382)
Q Consensus 88 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~l~~L~ 166 (382)
+..+.+++.|++++|.++ .+|. + -.+|++|.++++.--..+|..+. .+|++|++++| .+. .+|. .|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~-----sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE-----SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc-----ccc
Confidence 344577888888888776 4551 1 13588888876332225555442 46777777777 333 4443 456
Q ss_pred EEeCCCC
Q 048561 167 VLFLNNN 173 (382)
Q Consensus 167 ~L~L~~n 173 (382)
.|++..+
T Consensus 116 ~L~L~~n 122 (426)
T PRK15386 116 SLEIKGS 122 (426)
T ss_pred eEEeCCC
Confidence 6665544
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=4.5e-08 Score=87.27 Aligned_cols=199 Identities=14% Similarity=0.128 Sum_probs=128.9
Q ss_pred ceeEEEcCCCCCCCCCCccccCCC-CCCCEEEcCCCcCcc-cCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQL-PDLSLFHANSNKFSG-TISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 145 (382)
.+..+.+...-+..+-+...+.-+ +.|++|||++..++. .+-.-+..+.+|+.|.|.++++...+...+..-.+|+.|
T Consensus 160 gV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l 239 (419)
T KOG2120|consen 160 GVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL 239 (419)
T ss_pred CeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence 344555554433332222222222 368899999888763 222345678889999999999988888888888899999
Q ss_pred EecCCC-CCCCCCcccc---cCCCCEEeCCCCcCCCcCCcC-CCC--CcchhhhccCcccc--cccchhHHHhhhhHHHH
Q 048561 146 DIRFNF-FTGSVPPQVF---MQTLDVLFLNNNNFMQKLPQN-LGS--TPALYLTFANNKFT--GSIPRSIGKLSSTLIEV 216 (382)
Q Consensus 146 ~Ls~n~-l~~~~p~~~~---l~~L~~L~L~~n~l~~~~p~~-~~~--~~L~~L~l~~n~l~--~~lp~~l~~l~~~L~~L 216 (382)
+++.+. ++ +...... +..|..|+++-|.++...-.. +.. .++..|++++..-. ...-+.+..-++++..|
T Consensus 240 nlsm~sG~t-~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 240 NLSMCSGFT-ENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred ccccccccc-hhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 998764 33 2222111 578888999888765433222 222 56778888876421 11122333335789999
Q ss_pred Hhhccc-cCCCCchhcccCcCCCccccCCccCCCCCCcC---CCCCCCCCEEeCcCC
Q 048561 217 LFLNNL-LTGCLPYELGFLREARVFDASNNRLTGPLPCS---LGCLEKIERLNLSGN 269 (382)
Q Consensus 217 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~L~~N 269 (382)
|+++|. ++......|..+..|++|.++.|..- +|.. +...++|.+|++.++
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 999865 45444566788999999999998743 4443 456789999998775
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=4.7e-05 Score=72.49 Aligned_cols=139 Identities=15% Similarity=0.148 Sum_probs=85.6
Q ss_pred cCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhh
Q 048561 112 LAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYL 191 (382)
Q Consensus 112 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L 191 (382)
+..+.+++.|++++|.++ .+|. + ..+|++|.++++.-...+|..+ ..+|++|.+++|.....+|.. |+.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~s-----Le~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPES-----VRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccccc-----cceE
Confidence 445689999999999988 6662 2 2469999998854433666543 468999999998444455544 5555
Q ss_pred hccCcccccccchhHHHhhhhHHHHHhhccccCCC--CchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCC
Q 048561 192 TFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC--LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGN 269 (382)
Q Consensus 192 ~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 269 (382)
++..+... . +..++++|+.|.+.+++.... .+. .-.++|++|++++|... ..|..+. .+|+.|.++.+
T Consensus 118 ~L~~n~~~-~----L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 118 EIKGSATD-S----IKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EeCCCCCc-c----cccCcchHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 66555432 1 223445677777654321100 110 11257888888887765 3444333 57888888766
Q ss_pred c
Q 048561 270 L 270 (382)
Q Consensus 270 ~ 270 (382)
.
T Consensus 188 ~ 188 (426)
T PRK15386 188 Q 188 (426)
T ss_pred c
Confidence 3
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.63 E-value=0.00012 Score=62.16 Aligned_cols=101 Identities=19% Similarity=0.199 Sum_probs=65.2
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCc--ccccCCCCCcEE
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFP--VAILGKNDLSFL 145 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L 145 (382)
....+||+.|++.. ...|..+++|.+|.+.+|+|+.+-|.--.-+++|+.|.|.+|+|. .+- .-+..+++|++|
T Consensus 43 ~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 45667888887765 233667778888888888888544433334567888888888776 222 124567788888
Q ss_pred EecCCCCCCCCCccc----ccCCCCEEeCCC
Q 048561 146 DIRFNFFTGSVPPQV----FMQTLDVLFLNN 172 (382)
Q Consensus 146 ~Ls~n~l~~~~p~~~----~l~~L~~L~L~~ 172 (382)
.+-+|..+..--... .+++|+.||...
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 888887763222111 167778777654
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.43 E-value=3.5e-05 Score=79.11 Aligned_cols=118 Identities=17% Similarity=0.161 Sum_probs=80.1
Q ss_pred ccchhHHHhhhhHHHHHhhccccCC-CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcc-cCchh
Q 048561 201 SIPRSIGKLSSTLIEVLFLNNLLTG-CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYG-QVPEV 278 (382)
Q Consensus 201 ~lp~~l~~l~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~ 278 (382)
..+..++.+.++|+.|.+.+-.+.. .+-....++++|..||+|+..++. + ..++.+++|+.|.+.+=.+.. ..-..
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHH
Confidence 3445566666777777777655432 233445678888889999888873 3 567788888888888766652 12235
Q ss_pred hcCCCCCCEEEcccccCcccC-------CcccCCCCCCEEEccCCCCCC
Q 048561 279 LCALDNLVNLSLSNNYFTGVG-------PLCRKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 279 ~~~l~~L~~L~L~~N~l~~~~-------~~~~~l~~L~~L~L~~N~l~~ 320 (382)
+..+++|+.||+|........ ..-..+|+|+.||.+++.+..
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 667888999999887544322 123558899999999877765
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.36 E-value=0.00029 Score=59.95 Aligned_cols=103 Identities=21% Similarity=0.121 Sum_probs=65.2
Q ss_pred hhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccC-chhhcCCCCCCEEE
Q 048561 211 STLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQV-PEVLCALDNLVNLS 289 (382)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~ 289 (382)
.....+|+++|.+.. ...|.+++.|..|.+.+|+|+...|.--..+++|+.|.|.+|.|.... -.-+..++.|++|.
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 355667777777652 234667777777788888777544443344567777777777776211 11244567777777
Q ss_pred cccccCcccC----CcccCCCCCCEEEccC
Q 048561 290 LSNNYFTGVG----PLCRKLIKNGVLDVNR 315 (382)
Q Consensus 290 L~~N~l~~~~----~~~~~l~~L~~L~L~~ 315 (382)
+-+|.++... ..+..+++|+.||...
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7777776542 2466777777777554
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.32 E-value=0.0001 Score=75.70 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=76.5
Q ss_pred ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCc-cCcccccCCCCCcE
Q 048561 66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSG-TFPVAILGKNDLSF 144 (382)
Q Consensus 66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~ 144 (382)
.+.+++|.+++-.+..+.....+.++++|+.||+++.+++.. ..+++|++|+.|.+.+=.+.. ..-..+.+|++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 346788888877776544555667888888888888888743 567888888888888766652 12235678888999
Q ss_pred EEecCCCCCCCCCcc------c--ccCCCCEEeCCCCcCCCc
Q 048561 145 LDIRFNFFTGSVPPQ------V--FMQTLDVLFLNNNNFMQK 178 (382)
Q Consensus 145 L~Ls~n~l~~~~p~~------~--~l~~L~~L~L~~n~l~~~ 178 (382)
||+|..... ..+.. . .+|.|+.||.+++.+.+.
T Consensus 225 LDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 225 LDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred eeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 999887655 22211 1 168888888888776543
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.96 E-value=0.00086 Score=59.31 Aligned_cols=99 Identities=27% Similarity=0.233 Sum_probs=61.9
Q ss_pred hhHHHHHhhccccCCCCchhcccCcCCCccccCCc--cCCCCCCcCCCCCCCCCEEeCcCCcCcccCchh---hcCCCCC
Q 048561 211 STLIEVLFLNNLLTGCLPYELGFLREARVFDASNN--RLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEV---LCALDNL 285 (382)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~---~~~l~~L 285 (382)
..|+.+.+.+..++.. ..+..+++|+.|.++.| ++.+.++-....+++|+++++++|+|+ . +.. +..+.+|
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhcch
Confidence 5567777776666521 24556778888888888 555444444445578888888888876 2 222 3445677
Q ss_pred CEEEcccccCcccCC----cccCCCCCCEEEc
Q 048561 286 VNLSLSNNYFTGVGP----LCRKLIKNGVLDV 313 (382)
Q Consensus 286 ~~L~L~~N~l~~~~~----~~~~l~~L~~L~L 313 (382)
..|++.+|..+.... .+.-+++|++||-
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 778888877665322 3555667776653
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.88 E-value=0.00064 Score=60.13 Aligned_cols=85 Identities=24% Similarity=0.350 Sum_probs=46.6
Q ss_pred CCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecC--CCCccCcccccCCCCCcEEEecCCCCCC--CCCcccccCC
Q 048561 89 DQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNN--KFSGTFPVAILGKNDLSFLDIRFNFFTG--SVPPQVFMQT 164 (382)
Q Consensus 89 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~l~~ 164 (382)
..+..|+.|++.+..++. + ..+..|++|++|.++.| ++.+.++.....+++|++|++++|++.- .+.+.-.+.+
T Consensus 40 d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceee-c-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 344555555665655552 1 13455667777777777 4444444444455777777777777651 1111112455
Q ss_pred CCEEeCCCCcC
Q 048561 165 LDVLFLNNNNF 175 (382)
Q Consensus 165 L~~L~L~~n~l 175 (382)
|..|++.+|..
T Consensus 118 L~~Ldl~n~~~ 128 (260)
T KOG2739|consen 118 LKSLDLFNCSV 128 (260)
T ss_pred hhhhhcccCCc
Confidence 56666665544
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.08 E-value=0.015 Score=46.31 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=34.7
Q ss_pred ccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc--cCC
Q 048561 87 FIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQT 164 (382)
Q Consensus 87 ~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--l~~ 164 (382)
.|.+..+|+.+.+.. .+......+|..+++|+.+.+..+ +...-...|.++++|+.+.+.. .+. .++...+ +.+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 455555666666653 344344445566656666666553 4422233445555566666644 332 2333222 455
Q ss_pred CCEEeCCCC
Q 048561 165 LDVLFLNNN 173 (382)
Q Consensus 165 L~~L~L~~n 173 (382)
|+.+.+..+
T Consensus 83 l~~i~~~~~ 91 (129)
T PF13306_consen 83 LKNIDIPSN 91 (129)
T ss_dssp ECEEEETTT
T ss_pred ccccccCcc
Confidence 666665443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.00063 Score=60.75 Aligned_cols=97 Identities=21% Similarity=0.145 Sum_probs=74.3
Q ss_pred hhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCch--hhcCCCCCCEE
Q 048561 211 STLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPE--VLCALDNLVNL 288 (382)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L 288 (382)
.+.+.|++.++.++++ .....++.|+.|.|+-|+|+.. ..+..+++|++|+|..|.|. .+.+ .+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence 4567788888887742 2356789999999999999843 34668899999999999887 3332 46688999999
Q ss_pred EcccccCcccCC------cccCCCCCCEEE
Q 048561 289 SLSNNYFTGVGP------LCRKLIKNGVLD 312 (382)
Q Consensus 289 ~L~~N~l~~~~~------~~~~l~~L~~L~ 312 (382)
.|..|.-.+... .++.+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999998776433 467888888886
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.46 E-value=0.0053 Score=32.76 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=8.0
Q ss_pred CCEEEeecCCCCccCcccc
Q 048561 118 LYELDISNNKFSGTFPVAI 136 (382)
Q Consensus 118 L~~L~Ls~n~l~~~~p~~l 136 (382)
|++|||++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 444433
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.36 E-value=0.0091 Score=29.63 Aligned_cols=16 Identities=31% Similarity=0.465 Sum_probs=8.1
Q ss_pred CCCEEEccCCCCCCCC
Q 048561 307 KNGVLDVNRNCIHYLP 322 (382)
Q Consensus 307 ~L~~L~L~~N~l~~lp 322 (382)
+|+.|+|++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5667777777766655
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.96 E-value=0.00038 Score=68.53 Aligned_cols=182 Identities=24% Similarity=0.188 Sum_probs=95.9
Q ss_pred CCCCEEEeecCCCCccC----cccccCCCCCcEEEecCCCCCCCCCcccc-----c-CCCCEEeCCCCcCCCcCCc----
Q 048561 116 PYLYELDISNNKFSGTF----PVAILGKNDLSFLDIRFNFFTGSVPPQVF-----M-QTLDVLFLNNNNFMQKLPQ---- 181 (382)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-----l-~~L~~L~L~~n~l~~~~p~---- 181 (382)
..+..|.|.+|.+.... ...+...+.|+.|++++|.+.+.--..+. . ..|+.|++..|.++...-.
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 34778888888887432 23455678888889988888732211111 1 3456677777766543222
Q ss_pred CCCC-CcchhhhccCccccc----ccchhHHH---hhhhHHHHHhhccccCCC----CchhcccCcC-CCccccCCccCC
Q 048561 182 NLGS-TPALYLTFANNKFTG----SIPRSIGK---LSSTLIEVLFLNNLLTGC----LPYELGFLRE-ARVFDASNNRLT 248 (382)
Q Consensus 182 ~~~~-~~L~~L~l~~n~l~~----~lp~~l~~---l~~~L~~L~l~~n~l~~~----~~~~~~~l~~-L~~L~Ls~n~l~ 248 (382)
.+.. ..++.++++.|.+.. .++..+.. -..++++|.+.+|.++.. ....+...+. +..|++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 2222 456667777666531 11222222 124566666666665521 1122333444 555666666665
Q ss_pred CC----CCcCCCCC-CCCCEEeCcCCcCcccC----chhhcCCCCCCEEEcccccCcc
Q 048561 249 GP----LPCSLGCL-EKIERLNLSGNLLYGQV----PEVLCALDNLVNLSLSNNYFTG 297 (382)
Q Consensus 249 ~~----~p~~~~~l-~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~ 297 (382)
+. ....+..+ ..++.++++.|.|+..- ...+..++.++++.+++|.+..
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 32 11122233 45566666666665322 2333444566666666666654
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.93 E-value=0.065 Score=42.57 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=57.5
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
.++.+.+.. .+.. +....|.+++.|+.+++.++ +......+|.++++|+.+.+.+ .+...-...|..+++|+.+++
T Consensus 13 ~l~~i~~~~-~~~~-I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 13 NLESITFPN-TIKK-IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp T--EEEETS-T--E-E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCEEEECC-CeeE-eChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 466777764 3443 45667889989999999885 6655566788898899999976 444233456677899999999
Q ss_pred cCCCCCCCCCcccc-cCCCCEEeCCC
Q 048561 148 RFNFFTGSVPPQVF-MQTLDVLFLNN 172 (382)
Q Consensus 148 s~n~l~~~~p~~~~-l~~L~~L~L~~ 172 (382)
..+ +. .++...+ -..|+.+.+..
T Consensus 89 ~~~-~~-~i~~~~f~~~~l~~i~~~~ 112 (129)
T PF13306_consen 89 PSN-IT-EIGSSSFSNCNLKEINIPS 112 (129)
T ss_dssp TTT--B-EEHTTTTTT-T--EEE-TT
T ss_pred Ccc-cc-EEchhhhcCCCceEEEECC
Confidence 765 54 4544443 23778887765
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.79 E-value=0.013 Score=31.27 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=16.0
Q ss_pred CCCEEEcCCCcCcccCCcccCCC
Q 048561 93 DLSLFHANSNKFSGTISPKLAQL 115 (382)
Q Consensus 93 ~L~~L~l~~n~l~~~~p~~l~~l 115 (382)
+|++|++++|.++ .+|..|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4788888888888 677766543
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=0.013 Score=52.63 Aligned_cols=97 Identities=19% Similarity=0.108 Sum_probs=46.4
Q ss_pred CCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccc--hhHHHhhhhHHHHHh
Q 048561 141 DLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIP--RSIGKLSSTLIEVLF 218 (382)
Q Consensus 141 ~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp--~~l~~l~~~L~~L~l 218 (382)
+.+.|++.++.++ .|.--..|+.|++|.|+-|+|+..-| .-..++|++|+|..|.|.. +. ..+.++ ++|+.|.|
T Consensus 20 ~vkKLNcwg~~L~-DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~s-ldEL~YLknl-psLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIES-LDELEYLKNL-PSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCcc-HHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhccccc-HHHHHHHhcC-chhhhHhh
Confidence 3444555555544 22111114555555555555432211 1111455566666665542 21 123344 67777777
Q ss_pred hccccCCCCch-----hcccCcCCCccc
Q 048561 219 LNNLLTGCLPY-----ELGFLREARVFD 241 (382)
Q Consensus 219 ~~n~l~~~~~~-----~~~~l~~L~~L~ 241 (382)
..|.-.+..+. .+.-+++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 77766555432 234566666665
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.07 E-value=0.0012 Score=62.18 Aligned_cols=134 Identities=16% Similarity=0.111 Sum_probs=69.4
Q ss_pred hhHHHHHhhccccC-CCCchh-cccCcCCCccccCCcc-CCCCCCcCC-CCCCCCCEEeCcCCcCcc--cCchhhcCCCC
Q 048561 211 STLIEVLFLNNLLT-GCLPYE-LGFLREARVFDASNNR-LTGPLPCSL-GCLEKIERLNLSGNLLYG--QVPEVLCALDN 284 (382)
Q Consensus 211 ~~L~~L~l~~n~l~-~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~ 284 (382)
..|+.++.+++... ...-.. ..+..+|+.|-+..++ ++..-...+ .+...|+.+++....... .+...-..++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 45677777765432 111112 2456777777777665 221111111 145677777777665431 11122234577
Q ss_pred CCEEEcccccCc-cc-----CCcccCCCCCCEEEccCCCCCCCCCcccccchhhhccCCCCCCCCCCcCccCCCCC
Q 048561 285 LVNLSLSNNYFT-GV-----GPLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQPRFCFYPSWYNFIPCSKV 354 (382)
Q Consensus 285 L~~L~L~~N~l~-~~-----~~~~~~l~~L~~L~L~~N~l~~lp~~~~~~~~~~~~~np~~c~~~~~~~~~~c~~~ 354 (382)
|+.+.|+++... .. ...-..+..|..+.|++..... +. .+..-..|..+..+.++.|..+
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~--d~--------~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT--DA--------TLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch--HH--------HHHHHhhCcccceeeeechhhh
Confidence 888888877433 22 1112344566777776654332 11 1112235778888888888853
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.28 E-value=0.064 Score=26.54 Aligned_cols=12 Identities=42% Similarity=0.415 Sum_probs=3.9
Q ss_pred CcEEEecCCCCC
Q 048561 142 LSFLDIRFNFFT 153 (382)
Q Consensus 142 L~~L~Ls~n~l~ 153 (382)
|+.|+|++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444433
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.10 E-value=0.0086 Score=59.17 Aligned_cols=108 Identities=17% Similarity=0.085 Sum_probs=52.0
Q ss_pred CCCCCCEEEcCCCcCccc--CCcccCCCCCCCEEEeecC-CCCccCc----ccccCCCCCcEEEecCCC-CCCCCCcccc
Q 048561 90 QLPDLSLFHANSNKFSGT--ISPKLAQLPYLYELDISNN-KFSGTFP----VAILGKNDLSFLDIRFNF-FTGSVPPQVF 161 (382)
Q Consensus 90 ~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~Ls~n-~l~~~~p----~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~ 161 (382)
..++|+.|.+.++.-... +-.....+++|+.|+++++ ......+ .....+.+|+.|+++++. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 456677776666532211 2233445677777777752 1111111 122345667777777766 3321111111
Q ss_pred --cCCCCEEeCCCCc-CCCcCCcCCCC--CcchhhhccCcc
Q 048561 162 --MQTLDVLFLNNNN-FMQKLPQNLGS--TPALYLTFANNK 197 (382)
Q Consensus 162 --l~~L~~L~L~~n~-l~~~~p~~~~~--~~L~~L~l~~n~ 197 (382)
+++|++|.+.++. ++...-..+.. ..|++|+++++.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4677777766554 23211111111 346666666554
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.08 E-value=0.0013 Score=64.86 Aligned_cols=201 Identities=24% Similarity=0.188 Sum_probs=122.6
Q ss_pred CCEEEcCCCcCccc----CCcccCCCCCCCEEEeecCCCCccCc----ccccCC-CCCcEEEecCCCCCCCCCccc----
Q 048561 94 LSLFHANSNKFSGT----ISPKLAQLPYLYELDISNNKFSGTFP----VAILGK-NDLSFLDIRFNFFTGSVPPQV---- 160 (382)
Q Consensus 94 L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l-~~L~~L~Ls~n~l~~~~p~~~---- 160 (382)
+..|.+.+|.+... +...+.....|+.|++++|.+.+.-- ..+... ..+++|++..|.++..--..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 77888888887643 33455677889999999998873211 223333 567788888888774432222
Q ss_pred c-cCCCCEEeCCCCcCCC----cCCcCCC----C-CcchhhhccCcccccccc----hhHHHhhhhHHHHHhhccccCCC
Q 048561 161 F-MQTLDVLFLNNNNFMQ----KLPQNLG----S-TPALYLTFANNKFTGSIP----RSIGKLSSTLIEVLFLNNLLTGC 226 (382)
Q Consensus 161 ~-l~~L~~L~L~~n~l~~----~~p~~~~----~-~~L~~L~l~~n~l~~~lp----~~l~~l~~~L~~L~l~~n~l~~~ 226 (382)
. ...++.+++..|.+.. .++..+. . ..+++|.++++.++...- ..+......+..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 1 4678888888887731 1111222 2 567888998888762211 11222223377799998887643
Q ss_pred ----CchhcccC-cCCCccccCCccCCCCCC----cCCCCCCCCCEEeCcCCcCcccCc----hhhcCCCCCCEEEcccc
Q 048561 227 ----LPYELGFL-REARVFDASNNRLTGPLP----CSLGCLEKIERLNLSGNLLYGQVP----EVLCALDNLVNLSLSNN 293 (382)
Q Consensus 227 ----~~~~~~~l-~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~L~~N 293 (382)
+...+..+ ..++.++++.|.|++.-. ..+.....++.+.+..|.+...-. ........+..+.+.++
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 22334445 677899999999875433 334456788999999998874321 12223344555555544
Q ss_pred c
Q 048561 294 Y 294 (382)
Q Consensus 294 ~ 294 (382)
.
T Consensus 329 ~ 329 (478)
T KOG4308|consen 329 G 329 (478)
T ss_pred C
Confidence 3
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.56 E-value=0.11 Score=28.77 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=16.7
Q ss_pred CCCCCEEEccCCCCCCCCCc
Q 048561 305 LIKNGVLDVNRNCIHYLPDQ 324 (382)
Q Consensus 305 l~~L~~L~L~~N~l~~lp~~ 324 (382)
+++|+.|+|++|.|+.+|+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46789999999999999864
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.56 E-value=0.11 Score=28.77 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=16.7
Q ss_pred CCCCCEEEccCCCCCCCCCc
Q 048561 305 LIKNGVLDVNRNCIHYLPDQ 324 (382)
Q Consensus 305 l~~L~~L~L~~N~l~~lp~~ 324 (382)
+++|+.|+|++|.|+.+|+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46789999999999999864
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.79 E-value=0.0032 Score=54.96 Aligned_cols=83 Identities=13% Similarity=0.065 Sum_probs=57.3
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
..++.||++.|.+.. ....|+-++.|..|+++.|.+. ..|..++++..++.+++..|..+ ..|.+++..+++++++
T Consensus 42 kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred ceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 356777777777654 3344556667777777777766 56777777777777777777766 6777777777777777
Q ss_pred ecCCCCC
Q 048561 147 IRFNFFT 153 (382)
Q Consensus 147 Ls~n~l~ 153 (382)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 7777654
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.47 E-value=0.16 Score=28.00 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=8.9
Q ss_pred CCCcEEEecCCCCCCCCCc
Q 048561 140 NDLSFLDIRFNFFTGSVPP 158 (382)
Q Consensus 140 ~~L~~L~Ls~n~l~~~~p~ 158 (382)
++|++|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555555 4443
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.47 E-value=0.16 Score=28.00 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=8.9
Q ss_pred CCCcEEEecCCCCCCCCCc
Q 048561 140 NDLSFLDIRFNFFTGSVPP 158 (382)
Q Consensus 140 ~~L~~L~Ls~n~l~~~~p~ 158 (382)
++|++|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555555 4443
No 81
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.92 E-value=0.15 Score=28.19 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=16.4
Q ss_pred CCCCEEEccCCCCCCCCCc
Q 048561 306 IKNGVLDVNRNCIHYLPDQ 324 (382)
Q Consensus 306 ~~L~~L~L~~N~l~~lp~~ 324 (382)
++|+.|++++|+|+++|+.
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLTSLPEL 20 (26)
T ss_pred cccceeecCCCccccCccc
Confidence 4688999999999999974
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.53 E-value=0.004 Score=54.35 Aligned_cols=89 Identities=15% Similarity=0.154 Sum_probs=70.3
Q ss_pred ccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cC
Q 048561 85 DGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQ 163 (382)
Q Consensus 85 ~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~ 163 (382)
-..+..+...+.||++.|++. .+-..|.-++.|..|+++.|.+. ..|..++.+..++.+++..|..+ ..|.... .+
T Consensus 35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred hhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence 334667778888999988876 34456677788888999988887 77888888888888888888887 7777776 78
Q ss_pred CCCEEeCCCCcCC
Q 048561 164 TLDVLFLNNNNFM 176 (382)
Q Consensus 164 ~L~~L~L~~n~l~ 176 (382)
+++++++-.|.++
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 8888888888754
No 83
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.09 E-value=0.013 Score=55.25 Aligned_cols=250 Identities=15% Similarity=0.105 Sum_probs=127.3
Q ss_pred ceeEEEcCCCCCCCCC-CccccCCCCCCCEEEcCCCcC-cccCCccc-CCCCCCCEEEeecC-CCCccCcc-cccCCCCC
Q 048561 68 ALASIDFNGFELAAPT-LDGFIDQLPDLSLFHANSNKF-SGTISPKL-AQLPYLYELDISNN-KFSGTFPV-AILGKNDL 142 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~p~~l-~~l~~L~~L~Ls~n-~l~~~~p~-~l~~l~~L 142 (382)
.++.|.+.+..-.+.. ...+-.+.++++.|.+.++.. +...-..+ ..++.|++|+|..+ .++...-. ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5677777776544422 222335678888888877742 21111112 24677888887773 34322111 22356778
Q ss_pred cEEEecCCC-CCCC-CCc-ccccCC--------------------------CCEEeCCCCcCCCcCCc---CCCCCcchh
Q 048561 143 SFLDIRFNF-FTGS-VPP-QVFMQT--------------------------LDVLFLNNNNFMQKLPQ---NLGSTPALY 190 (382)
Q Consensus 143 ~~L~Ls~n~-l~~~-~p~-~~~l~~--------------------------L~~L~L~~n~l~~~~p~---~~~~~~L~~ 190 (382)
++|+++.+. +++. +.. .-+... +..+++.++........ .-+..+++.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 888877764 2210 000 001122 22333333321111000 001135666
Q ss_pred hhccCccc-ccccchhHHHhhhhHHHHHhhcccc-CCCCchhc-ccCcCCCccccCCccCC--CCCCcCCCCCCCCCEEe
Q 048561 191 LTFANNKF-TGSIPRSIGKLSSTLIEVLFLNNLL-TGCLPYEL-GFLREARVFDASNNRLT--GPLPCSLGCLEKIERLN 265 (382)
Q Consensus 191 L~l~~n~l-~~~lp~~l~~l~~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~ 265 (382)
++.+++.- +...-..++.-..+|+.+.+..++. +..--..+ .+...|+.+++..+... +.+...-.+++.|+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 66665542 2222233333345666666666652 21111122 35677888888777543 11222223567888888
Q ss_pred CcCCcCcccC-----chhhcCCCCCCEEEcccccCcc--cCCcccCCCCCCEEEccCCC
Q 048561 266 LSGNLLYGQV-----PEVLCALDNLVNLSLSNNYFTG--VGPLCRKLIKNGVLDVNRNC 317 (382)
Q Consensus 266 L~~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~l~~L~~L~L~~N~ 317 (382)
++++.+.... ...-..+..|..+.|+++.... ....+..+++|+.+++.+.+
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 8887543111 2223456778888888886553 23356677788888777654
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=83.00 E-value=0.97 Score=25.09 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=12.7
Q ss_pred CCCCEEEccCCCCCCCC
Q 048561 306 IKNGVLDVNRNCIHYLP 322 (382)
Q Consensus 306 ~~L~~L~L~~N~l~~lp 322 (382)
.+|+.|++++|+|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 56788888888877654
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=80.14 E-value=0.97 Score=44.51 Aligned_cols=64 Identities=22% Similarity=0.125 Sum_probs=29.7
Q ss_pred ccCcCCCccccCCcc-CCCCCCcCCC-CCCCCCEEeCcCCc-CcccC-chhhcCCCCCCEEEcccccC
Q 048561 232 GFLREARVFDASNNR-LTGPLPCSLG-CLEKIERLNLSGNL-LYGQV-PEVLCALDNLVNLSLSNNYF 295 (382)
Q Consensus 232 ~~l~~L~~L~Ls~n~-l~~~~p~~~~-~l~~L~~L~L~~N~-l~~~~-p~~~~~l~~L~~L~L~~N~l 295 (382)
..+.+|+.|+++++. ++...-..+. .+++|+.|.+.++. ++... -.....+++|++|+++++..
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 344566666666655 3322222222 24566666655444 33211 12223445566666666543
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=79.61 E-value=0.52 Score=25.37 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=4.8
Q ss_pred CCCEEeCcCCcCc
Q 048561 260 KIERLNLSGNLLY 272 (382)
Q Consensus 260 ~L~~L~L~~N~l~ 272 (382)
+|++|++++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.07 E-value=0.19 Score=43.15 Aligned_cols=81 Identities=23% Similarity=0.150 Sum_probs=45.0
Q ss_pred cCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccC-chhhc-CCCCCCEEEcccc-cCcccC-CcccCCCCCCE
Q 048561 235 REARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQV-PEVLC-ALDNLVNLSLSNN-YFTGVG-PLCRKLIKNGV 310 (382)
Q Consensus 235 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~-~l~~L~~L~L~~N-~l~~~~-~~~~~l~~L~~ 310 (382)
..++.+|-++..|..+--+.+..++.++.|.+.++.--+.. -.-++ -.++|+.|+|++| +||.-. ..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 34566666666665444445556667777777666422110 00111 2367788888877 566432 24566667766
Q ss_pred EEccC
Q 048561 311 LDVNR 315 (382)
Q Consensus 311 L~L~~ 315 (382)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 66543
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.89 E-value=5.6 Score=22.28 Aligned_cols=15 Identities=20% Similarity=0.067 Sum_probs=10.8
Q ss_pred CCCCEEEccCCCCCC
Q 048561 306 IKNGVLDVNRNCIHY 320 (382)
Q Consensus 306 ~~L~~L~L~~N~l~~ 320 (382)
++|+.|||++|.|..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467788888887753
No 89
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.14 E-value=1.1 Score=38.55 Aligned_cols=37 Identities=8% Similarity=0.203 Sum_probs=17.2
Q ss_pred cccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCC
Q 048561 65 TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSN 102 (382)
Q Consensus 65 ~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n 102 (382)
....++.+|-++..|..+... .+.+++.++.|.+.++
T Consensus 99 ~~~~IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 99 DNVKIEAVDASDSSIMYEGLE-HLRDLRSIKSLSLANC 135 (221)
T ss_pred CcceEEEEecCCchHHHHHHH-HHhccchhhhheeccc
Confidence 344566666666555442111 1334444444444444
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=50.90 E-value=6.3 Score=39.16 Aligned_cols=14 Identities=21% Similarity=0.256 Sum_probs=6.7
Q ss_pred CcchhhhccCcccc
Q 048561 186 TPALYLTFANNKFT 199 (382)
Q Consensus 186 ~~L~~L~l~~n~l~ 199 (382)
..|++|-+.+|.+.
T Consensus 270 l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 270 LPLEELVLEGNPLC 283 (585)
T ss_pred CCHHHeeecCCccc
Confidence 34445555555443
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=50.78 E-value=36 Score=33.46 Aligned_cols=108 Identities=19% Similarity=0.089 Sum_probs=53.0
Q ss_pred CCCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCc----CCCCCcchhhhccCcccccccchhHHHhhhh--H
Q 048561 140 NDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQ----NLGSTPALYLTFANNKFTGSIPRSIGKLSST--L 213 (382)
Q Consensus 140 ~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~----~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~--L 213 (382)
+.+++++++.|.+....|..+.-+-.. +.+..|..+...-. .-+...+.+++++.|.....+|..+...... +
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p-l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl 243 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP-LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVL 243 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc-cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhh
Confidence 556777777777765555433211000 44444444322111 1112456677888877776666554433222 3
Q ss_pred HHHHhhccccC---CCCchhcccCcCCCccccCCccCC
Q 048561 214 IEVLFLNNLLT---GCLPYELGFLREARVFDASNNRLT 248 (382)
Q Consensus 214 ~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~ 248 (382)
+.++.+.-.+. ..-+...+..++++..+++.|..+
T Consensus 244 ~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s 281 (553)
T KOG4242|consen 244 FKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTS 281 (553)
T ss_pred hcccccccccchhhcccccccccccccchhhhccCCCC
Confidence 33333333222 011223445667777777777543
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.36 E-value=9.5 Score=37.96 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=16.2
Q ss_pred CCCCCCEEEcCCCcCccc--CCcccCCCCCCCEEEeecC
Q 048561 90 QLPDLSLFHANSNKFSGT--ISPKLAQLPYLYELDISNN 126 (382)
Q Consensus 90 ~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~Ls~n 126 (382)
+.+.+..++|++|++... +..--...|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 344555555555555411 0000112355566666655
No 93
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=44.22 E-value=12 Score=35.89 Aligned_cols=13 Identities=46% Similarity=0.851 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCcc
Q 048561 1 PSPSPPLVPEALT 13 (382)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (382)
||||||+||++-.
T Consensus 236 PPPPPP~PPp~~~ 248 (480)
T KOG2675|consen 236 PPPPPPAPPPAPF 248 (480)
T ss_pred CCCCCCCCCCccc
Confidence 5666666666544
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=30.45 E-value=30 Score=18.69 Aligned_cols=11 Identities=55% Similarity=0.736 Sum_probs=5.2
Q ss_pred CCCCEEEeecC
Q 048561 116 PYLYELDISNN 126 (382)
Q Consensus 116 ~~L~~L~Ls~n 126 (382)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34445555444
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.05 E-value=47 Score=39.90 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=28.1
Q ss_pred ccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcc
Q 048561 241 DASNNRLTGPLPCSLGCLEKIERLNLSGNLLYG 273 (382)
Q Consensus 241 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 273 (382)
||++|+|+...+..|..+.+|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 688999996666778889999999999998874
No 96
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.04 E-value=63 Score=38.92 Aligned_cols=32 Identities=22% Similarity=0.358 Sum_probs=24.8
Q ss_pred EcCCCCCCCCCCccccCCCCCCCEEEcCCCcCc
Q 048561 73 DFNGFELAAPTLDGFIDQLPDLSLFHANSNKFS 105 (382)
Q Consensus 73 ~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 105 (382)
||++|+|.. +..+.|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~Lst-Lp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIST-IEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCc-cChHHhccCCCceEEEeeCCccc
Confidence 577888877 56677888888888888888664
No 97
>PRK09718 hypothetical protein; Validated
Probab=20.27 E-value=2.9e+02 Score=27.48 Aligned_cols=10 Identities=20% Similarity=0.182 Sum_probs=5.2
Q ss_pred hHHHHHhhcc
Q 048561 212 TLIEVLFLNN 221 (382)
Q Consensus 212 ~L~~L~l~~n 221 (382)
.|+.|++.+.
T Consensus 290 ~~~~~~~~~~ 299 (512)
T PRK09718 290 QLKILNIVNK 299 (512)
T ss_pred HHHHHHHhhH
Confidence 4555555543
Done!