Query 048561
Match_columns 382
No_of_seqs 311 out of 4057
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 18:33:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048561.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048561hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2.8E-43 9.7E-48 328.8 12.7 291 19-317 4-302 (313)
2 3rgz_A Protein brassinosteroid 100.0 4.7E-39 1.6E-43 334.7 12.2 299 13-324 4-362 (768)
3 4eco_A Uncharacterized protein 100.0 1.7E-38 5.8E-43 323.8 11.1 293 18-323 27-450 (636)
4 3rgz_A Protein brassinosteroid 100.0 7E-37 2.4E-41 318.3 15.3 280 68-353 395-750 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 8E-37 2.7E-41 318.4 13.4 288 17-323 265-690 (876)
6 3v47_A TOLL-like receptor 5B a 100.0 4E-34 1.4E-38 279.9 17.9 254 88-341 75-410 (455)
7 4fcg_A Uncharacterized protein 100.0 5.6E-36 1.9E-40 281.2 3.9 276 18-323 24-318 (328)
8 1ogq_A PGIP-2, polygalacturona 100.0 8.3E-34 2.9E-38 264.6 8.1 250 92-343 50-308 (313)
9 2id5_A Lingo-1, leucine rich r 100.0 5.2E-32 1.8E-36 266.7 17.0 289 51-341 12-335 (477)
10 3oja_B Anopheles plasmodium-re 100.0 3.6E-32 1.2E-36 275.3 12.4 301 36-341 4-360 (597)
11 3o6n_A APL1; leucine-rich repe 100.0 1.9E-32 6.6E-37 263.0 9.2 271 66-341 44-354 (390)
12 3v47_A TOLL-like receptor 5B a 100.0 1.9E-31 6.4E-36 261.0 10.6 257 65-323 77-412 (455)
13 2ft3_A Biglycan; proteoglycan, 100.0 7.9E-30 2.7E-34 239.5 20.5 260 50-319 33-307 (332)
14 2ft3_A Biglycan; proteoglycan, 100.0 6.4E-30 2.2E-34 240.2 19.0 262 68-340 34-308 (332)
15 3t6q_A CD180 antigen; protein- 100.0 1.9E-30 6.4E-35 262.9 16.0 271 67-341 278-562 (606)
16 4g8a_A TOLL-like receptor 4; l 100.0 3.9E-30 1.3E-34 261.1 18.1 135 67-203 52-190 (635)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-30 5.2E-35 260.5 14.4 303 49-353 3-463 (549)
18 3vq2_A TLR4, TOLL-like recepto 100.0 3.2E-30 1.1E-34 261.2 16.6 131 211-341 424-560 (606)
19 1xku_A Decorin; proteoglycan, 100.0 8.9E-30 3.1E-34 238.9 18.1 263 49-320 30-307 (330)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8E-30 2.7E-34 256.2 19.0 270 67-341 52-512 (562)
21 1xku_A Decorin; proteoglycan, 100.0 9.8E-30 3.4E-34 238.6 18.2 263 68-340 32-307 (330)
22 2z7x_B TOLL-like receptor 1, v 100.0 3E-30 1E-34 256.8 15.0 129 211-341 324-483 (520)
23 2id5_A Lingo-1, leucine rich r 100.0 2.6E-30 9E-35 254.5 13.2 252 67-321 80-335 (477)
24 1ziw_A TOLL-like receptor 3; i 100.0 1E-29 3.4E-34 261.0 17.8 273 67-341 329-624 (680)
25 2z80_A TOLL-like receptor 2, v 100.0 2.1E-30 7.3E-35 245.4 10.2 274 46-323 26-318 (353)
26 3o6n_A APL1; leucine-rich repe 100.0 7.4E-30 2.5E-34 245.0 14.1 270 67-345 69-380 (390)
27 4eco_A Uncharacterized protein 100.0 7.3E-30 2.5E-34 260.1 14.1 265 67-340 305-601 (636)
28 3oja_B Anopheles plasmodium-re 100.0 1.1E-29 3.6E-34 257.1 14.1 278 67-352 75-393 (597)
29 3j0a_A TOLL-like receptor 5; m 100.0 3.1E-29 1.1E-33 263.3 16.6 110 213-322 268-378 (844)
30 3t6q_A CD180 antigen; protein- 100.0 6.1E-29 2.1E-33 251.8 17.6 252 68-322 255-516 (606)
31 4fcg_A Uncharacterized protein 100.0 3.8E-29 1.3E-33 234.6 13.6 286 14-329 5-301 (328)
32 2z66_A Variable lymphocyte rec 100.0 2E-29 6.7E-34 234.0 11.2 247 50-322 7-264 (306)
33 1ziw_A TOLL-like receptor 3; i 100.0 5.3E-28 1.8E-32 248.2 19.8 256 67-323 25-346 (680)
34 2z66_A Variable lymphocyte rec 100.0 1E-28 3.4E-33 229.2 12.4 242 70-341 10-263 (306)
35 4ecn_A Leucine-rich repeat pro 100.0 1.1E-27 3.7E-32 249.8 18.8 261 68-338 549-839 (876)
36 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-27 4E-32 251.4 18.2 253 66-324 72-399 (844)
37 3zyi_A Leucine-rich repeat-con 100.0 1.2E-27 4.2E-32 234.0 17.1 226 68-320 76-304 (452)
38 2z7x_B TOLL-like receptor 1, v 100.0 4.6E-28 1.6E-32 241.0 13.7 283 67-353 21-456 (520)
39 1wwl_A Monocyte differentiatio 99.9 7.4E-30 2.5E-34 237.7 0.4 244 67-321 43-311 (312)
40 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-27 5.7E-32 241.2 17.2 156 67-224 32-194 (606)
41 2z81_A CD282 antigen, TOLL-lik 99.9 7.1E-28 2.4E-32 241.0 14.3 131 191-323 315-468 (549)
42 3zyj_A Leucine-rich repeat-con 99.9 2.8E-27 9.5E-32 230.7 17.5 225 68-320 65-293 (440)
43 2z63_A TOLL-like receptor 4, v 99.9 1.4E-27 4.8E-32 239.8 15.3 129 213-341 398-533 (570)
44 3zyi_A Leucine-rich repeat-con 99.9 2.7E-27 9.3E-32 231.6 16.6 206 66-298 98-305 (452)
45 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7.9E-27 2.7E-31 234.4 18.4 125 69-199 33-159 (562)
46 1ozn_A Reticulon 4 receptor; N 99.9 9.6E-28 3.3E-32 220.4 10.6 222 70-320 14-239 (285)
47 3zyj_A Leucine-rich repeat-con 99.9 6.6E-27 2.2E-31 228.1 16.6 242 69-341 45-294 (440)
48 3o53_A Protein LRIM1, AGAP0063 99.9 5.7E-28 2E-32 225.5 5.8 239 68-319 11-250 (317)
49 4g8a_A TOLL-like receptor 4; l 99.9 1.2E-26 4.2E-31 235.3 15.9 276 64-341 73-582 (635)
50 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-26 3.6E-31 213.4 13.4 219 95-341 14-240 (285)
51 2z80_A TOLL-like receptor 2, v 99.9 1.4E-27 4.9E-32 226.0 7.3 265 71-341 35-316 (353)
52 4fmz_A Internalin; leucine ric 99.9 2.6E-26 8.9E-31 216.6 15.4 241 65-323 86-328 (347)
53 2z63_A TOLL-like receptor 4, v 99.9 1.8E-26 6.1E-31 231.8 14.8 251 68-322 29-412 (570)
54 2o6q_A Variable lymphocyte rec 99.9 2.1E-25 7.2E-30 203.2 20.6 217 47-322 2-221 (270)
55 4fmz_A Internalin; leucine ric 99.9 1.2E-25 4.1E-30 212.0 19.2 238 66-322 65-303 (347)
56 3oja_A Leucine-rich immune mol 99.9 3.1E-27 1.1E-31 233.1 8.0 216 92-319 34-250 (487)
57 1o6v_A Internalin A; bacterial 99.9 2.8E-25 9.7E-30 218.1 17.7 235 66-320 67-323 (466)
58 1o6v_A Internalin A; bacterial 99.9 4.9E-25 1.7E-29 216.4 17.4 239 65-322 88-347 (466)
59 3bz5_A Internalin-J, INLJ; leu 99.9 2.2E-24 7.6E-29 211.0 21.4 228 67-322 42-270 (457)
60 3o53_A Protein LRIM1, AGAP0063 99.9 2.7E-27 9.4E-32 220.8 0.5 236 67-316 34-272 (317)
61 1wwl_A Monocyte differentiatio 99.9 4.4E-27 1.5E-31 219.0 1.0 225 68-298 64-311 (312)
62 1p9a_G Platelet glycoprotein I 99.9 9.2E-25 3.1E-29 201.2 14.5 203 88-320 6-209 (290)
63 3oja_A Leucine-rich immune mol 99.9 2.6E-26 8.8E-31 226.6 3.9 234 67-314 34-270 (487)
64 1jl5_A Outer protein YOPM; leu 99.9 1.2E-25 4.1E-30 219.8 8.5 249 63-336 7-287 (454)
65 3bz5_A Internalin-J, INLJ; leu 99.9 2.7E-24 9.4E-29 210.4 17.1 236 65-323 83-356 (457)
66 2z62_A TOLL-like receptor 4, v 99.9 1.4E-24 4.7E-29 198.3 13.8 204 93-321 29-239 (276)
67 3g06_A SSPH2 (leucine-rich rep 99.9 4.6E-25 1.6E-29 222.8 10.5 220 69-324 42-279 (622)
68 4glp_A Monocyte differentiatio 99.9 2.2E-24 7.6E-29 200.4 13.1 200 116-320 91-308 (310)
69 2z62_A TOLL-like receptor 4, v 99.9 5.9E-24 2E-28 194.1 15.2 210 67-300 28-241 (276)
70 1jl5_A Outer protein YOPM; leu 99.9 1.5E-23 5.2E-28 204.9 18.5 77 93-176 132-208 (454)
71 2o6q_A Variable lymphocyte rec 99.9 1.1E-22 3.6E-27 185.3 21.4 198 92-341 16-220 (270)
72 3m19_A Variable lymphocyte rec 99.9 1.7E-22 6E-27 181.9 18.0 191 48-298 3-194 (251)
73 1p9a_G Platelet glycoprotein I 99.9 5.9E-22 2E-26 182.3 19.6 198 68-298 11-210 (290)
74 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-22 7.2E-27 203.3 17.8 221 67-321 61-299 (622)
75 3goz_A Leucine-rich repeat-con 99.9 1E-24 3.5E-29 207.2 -0.3 249 72-321 3-299 (362)
76 1h6u_A Internalin H; cell adhe 99.9 5.5E-23 1.9E-27 190.9 11.3 194 67-323 41-234 (308)
77 3rfs_A Internalin B, repeat mo 99.9 2.5E-23 8.7E-28 189.7 8.3 219 69-325 21-242 (272)
78 3rfs_A Internalin B, repeat mo 99.9 4.2E-23 1.4E-27 188.2 9.4 203 66-305 40-245 (272)
79 2ca6_A RAN GTPase-activating p 99.9 3.5E-25 1.2E-29 212.1 -4.9 234 88-322 28-319 (386)
80 2xwt_C Thyrotropin receptor; s 99.9 6.3E-22 2.1E-26 176.8 15.4 193 93-316 32-236 (239)
81 2ast_B S-phase kinase-associat 99.9 5.4E-25 1.9E-29 206.5 -5.6 256 51-322 38-309 (336)
82 4glp_A Monocyte differentiatio 99.9 1.7E-22 5.9E-27 187.7 10.3 225 66-297 63-308 (310)
83 1h6u_A Internalin H; cell adhe 99.9 2.1E-21 7E-26 180.3 13.6 174 65-300 61-234 (308)
84 3m19_A Variable lymphocyte rec 99.9 1.9E-21 6.5E-26 175.1 12.0 178 116-321 14-194 (251)
85 2ca6_A RAN GTPase-activating p 99.8 9.4E-24 3.2E-28 202.1 -5.6 233 67-300 32-320 (386)
86 2o6s_A Variable lymphocyte rec 99.8 3.1E-20 1E-24 162.2 16.9 179 49-236 6-190 (208)
87 1z7x_W Ribonuclease inhibitor; 99.8 1.8E-24 6.3E-29 211.5 -12.2 255 67-321 28-328 (461)
88 1z7x_W Ribonuclease inhibitor; 99.8 5.6E-24 1.9E-28 208.1 -9.2 252 68-319 86-383 (461)
89 2xwt_C Thyrotropin receptor; s 99.8 1.4E-20 4.7E-25 168.1 13.0 180 116-324 31-223 (239)
90 4ay9_X Follicle-stimulating ho 99.8 4.6E-21 1.6E-25 181.1 10.3 235 50-293 9-256 (350)
91 3goz_A Leucine-rich repeat-con 99.8 7.8E-23 2.7E-27 194.2 -2.6 227 96-322 2-269 (362)
92 3cvr_A Invasion plasmid antige 99.8 1.5E-20 5.2E-25 187.7 12.9 190 51-299 49-246 (571)
93 2ast_B S-phase kinase-associat 99.8 2.1E-22 7.3E-27 188.8 -1.6 229 67-301 70-311 (336)
94 3cvr_A Invasion plasmid antige 99.8 3.1E-20 1.1E-24 185.4 11.4 178 93-320 60-244 (571)
95 4ay9_X Follicle-stimulating ho 99.8 1.9E-20 6.5E-25 176.9 7.5 238 70-316 12-256 (350)
96 3e6j_A Variable lymphocyte rec 99.8 8E-19 2.7E-23 155.7 15.7 161 39-201 8-174 (229)
97 1h6t_A Internalin B; cell adhe 99.8 4.6E-19 1.6E-23 163.1 14.4 170 68-299 47-216 (291)
98 4b8c_D Glucose-repressible alc 99.8 6.6E-20 2.2E-24 189.0 9.3 247 16-272 127-404 (727)
99 2o6s_A Variable lymphocyte rec 99.8 2.5E-19 8.4E-24 156.4 10.2 178 70-284 10-190 (208)
100 1m9s_A Internalin B; cell inva 99.8 5.1E-19 1.7E-23 178.3 11.6 189 71-299 25-213 (605)
101 1h6t_A Internalin B; cell adhe 99.8 6.5E-18 2.2E-22 155.4 17.8 190 71-323 28-217 (291)
102 1dce_A Protein (RAB geranylger 99.7 3.5E-22 1.2E-26 200.1 -18.1 190 113-325 346-552 (567)
103 2v9t_B SLIT homolog 2 protein 99.7 1.6E-17 5.5E-22 146.3 13.4 150 50-200 11-166 (220)
104 2v70_A SLIT-2, SLIT homolog 2 99.7 2.5E-17 8.7E-22 145.1 14.4 153 95-298 14-168 (220)
105 1m9s_A Internalin B; cell inva 99.7 2.9E-17 9.8E-22 165.5 16.2 171 66-274 42-212 (605)
106 2v9t_B SLIT homolog 2 protein 99.7 3.7E-18 1.3E-22 150.5 8.3 151 119-320 14-166 (220)
107 4ezg_A Putative uncharacterize 99.7 6.2E-18 2.1E-22 146.3 9.5 60 232-295 133-193 (197)
108 3e6j_A Variable lymphocyte rec 99.7 1.6E-16 5.6E-21 140.7 18.3 102 70-175 22-124 (229)
109 1xeu_A Internalin C; cellular 99.7 9.5E-18 3.2E-22 152.0 10.4 169 68-299 20-188 (263)
110 2xot_A Amphoterin-induced prot 99.7 1.4E-17 4.8E-22 157.9 11.9 126 70-199 21-149 (361)
111 2v70_A SLIT-2, SLIT homolog 2 99.7 2.6E-17 8.7E-22 145.1 12.8 154 50-203 11-170 (220)
112 2xot_A Amphoterin-induced prot 99.7 1.5E-18 5E-23 164.6 4.8 173 119-319 21-202 (361)
113 1xeu_A Internalin C; cellular 99.7 5E-18 1.7E-22 153.8 7.7 174 90-324 17-190 (263)
114 1dce_A Protein (RAB geranylger 99.7 1.2E-20 4.2E-25 188.9 -12.4 167 137-325 346-529 (567)
115 4ezg_A Putative uncharacterize 99.7 5.5E-17 1.9E-21 140.3 11.9 84 233-319 110-194 (197)
116 1w8a_A SLIT protein; signaling 99.7 9.5E-16 3.2E-20 132.0 15.0 129 71-203 12-143 (192)
117 3ogk_B Coronatine-insensitive 99.7 4.5E-19 1.5E-23 178.7 -7.1 253 67-321 220-528 (592)
118 1w8a_A SLIT protein; signaling 99.7 3.3E-16 1.1E-20 134.9 10.2 130 50-179 8-142 (192)
119 3ogk_B Coronatine-insensitive 99.7 2.9E-19 9.8E-24 180.1 -10.6 110 211-320 378-502 (592)
120 2ell_A Acidic leucine-rich nuc 99.6 6E-17 2.1E-21 136.3 2.9 136 163-324 24-165 (168)
121 4b8c_D Glucose-repressible alc 99.6 1.7E-16 5.9E-21 163.5 5.4 171 66-248 223-404 (727)
122 2o6r_A Variable lymphocyte rec 99.6 7.9E-15 2.7E-19 124.4 13.2 110 92-201 28-139 (177)
123 2ell_A Acidic leucine-rich nuc 99.6 1.4E-15 5E-20 127.8 7.7 132 68-203 25-163 (168)
124 2wfh_A SLIT homolog 2 protein 99.6 7E-15 2.4E-19 126.7 8.6 91 230-320 49-140 (193)
125 2je0_A Acidic leucine-rich nuc 99.5 3.2E-15 1.1E-19 123.0 5.7 83 92-176 17-101 (149)
126 2je0_A Acidic leucine-rich nuc 99.5 5.8E-15 2E-19 121.5 6.8 126 67-194 17-148 (149)
127 2wfh_A SLIT homolog 2 protein 99.5 5.2E-14 1.8E-18 121.2 12.5 124 71-199 14-139 (193)
128 2p1m_B Transport inhibitor res 99.5 1.6E-17 5.4E-22 167.4 -11.4 131 187-318 373-518 (594)
129 3sb4_A Hypothetical leucine ri 99.5 2.8E-15 9.5E-20 140.1 4.6 244 67-323 49-314 (329)
130 2o6r_A Variable lymphocyte rec 99.5 8.7E-14 3E-18 117.9 13.1 129 50-180 7-141 (177)
131 2p1m_B Transport inhibitor res 99.5 4.3E-16 1.5E-20 156.8 -6.2 87 233-320 395-495 (594)
132 3sb4_A Hypothetical leucine ri 99.5 2.4E-14 8.1E-19 133.8 5.0 218 91-323 48-290 (329)
133 1a9n_A U2A', U2A'; complex (nu 99.5 8.5E-14 2.9E-18 117.9 7.5 63 232-296 85-153 (176)
134 1ds9_A Outer arm dynein; leuci 99.4 2.1E-16 7.1E-21 136.8 -10.8 152 91-297 17-186 (198)
135 4fdw_A Leucine rich hypothetic 99.4 6.2E-13 2.1E-17 127.4 11.9 228 83-323 127-362 (401)
136 3g39_A Variable lymphocyte rec 99.4 1.4E-12 4.7E-17 109.8 12.3 104 70-177 12-116 (170)
137 1a9n_A U2A', U2A'; complex (nu 99.4 1.8E-13 6.1E-18 115.9 6.7 125 68-199 20-153 (176)
138 2r9u_A Variable lymphocyte rec 99.4 4.4E-13 1.5E-17 113.4 8.9 104 217-323 18-122 (174)
139 1ds9_A Outer arm dynein; leuci 99.4 4.7E-16 1.6E-20 134.5 -10.0 155 112-320 14-186 (198)
140 4fdw_A Leucine rich hypothetic 99.4 1.3E-12 4.6E-17 125.1 13.0 235 68-316 136-380 (401)
141 3g39_A Variable lymphocyte rec 99.4 5.6E-13 1.9E-17 112.3 8.9 105 216-323 14-119 (170)
142 2r9u_A Variable lymphocyte rec 99.4 3E-12 1E-16 108.2 12.3 102 70-176 15-118 (174)
143 2ifg_A High affinity nerve gro 99.3 2.8E-11 9.6E-16 113.5 12.1 96 78-177 20-117 (347)
144 2ifg_A High affinity nerve gro 99.2 2.2E-11 7.4E-16 114.3 8.1 104 218-323 15-120 (347)
145 3un9_A NLR family member X1; l 99.2 3.4E-13 1.2E-17 128.0 -4.6 162 116-298 72-254 (372)
146 3un9_A NLR family member X1; l 99.1 3E-13 1E-17 128.4 -8.1 161 139-320 71-253 (372)
147 2ra8_A Uncharacterized protein 98.8 2.7E-09 9.1E-14 100.6 3.8 101 68-171 108-227 (362)
148 2ra8_A Uncharacterized protein 98.7 1.6E-08 5.3E-13 95.3 7.1 64 257-320 250-321 (362)
149 4fs7_A Uncharacterized protein 98.5 1.8E-07 6.1E-12 89.2 9.0 83 230-315 292-375 (394)
150 4gt6_A Cell surface protein; l 98.5 7.9E-07 2.7E-11 84.6 10.9 91 229-323 259-350 (394)
151 4fs7_A Uncharacterized protein 98.4 6.8E-07 2.3E-11 85.1 9.8 215 86-311 156-393 (394)
152 3rw6_A Nuclear RNA export fact 98.3 6.3E-08 2.1E-12 86.9 -0.1 63 233-297 168-234 (267)
153 4gt6_A Cell surface protein; l 98.3 1.2E-06 4.2E-11 83.3 8.9 103 211-317 265-368 (394)
154 3rw6_A Nuclear RNA export fact 98.3 7.1E-07 2.4E-11 80.0 5.3 66 114-180 168-237 (267)
155 1io0_A Tropomodulin; LRR prote 98.2 1.6E-07 5.5E-12 79.7 0.5 66 88-153 32-106 (185)
156 1io0_A Tropomodulin; LRR prote 98.2 1.1E-07 3.8E-12 80.7 -1.4 110 67-176 36-164 (185)
157 4h09_A Hypothetical leucine ri 98.0 3.5E-05 1.2E-09 72.7 10.6 92 228-322 233-325 (379)
158 4h09_A Hypothetical leucine ri 97.9 9.6E-05 3.3E-09 69.6 12.5 96 68-171 47-143 (379)
159 3e4g_A ATP synthase subunit S, 97.7 1.2E-05 4E-10 67.2 2.9 84 67-151 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.6 1.6E-05 5.5E-10 66.3 2.3 83 92-174 61-150 (176)
161 3rfe_A Platelet glycoprotein I 96.8 0.0026 8.7E-08 50.2 6.3 37 117-153 32-68 (130)
162 3rfe_A Platelet glycoprotein I 96.6 0.0037 1.3E-07 49.2 6.1 57 239-297 12-69 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.5 0.0006 2E-08 57.8 1.0 64 90-153 39-111 (197)
164 1pgv_A TMD-1, tropomodulin TMD 96.4 0.00073 2.5E-08 57.3 1.0 83 234-316 40-136 (197)
165 2lz0_A Uncharacterized protein 55.2 43 0.0015 24.2 6.8 41 84-125 12-52 (100)
166 2lz0_A Uncharacterized protein 41.2 50 0.0017 23.8 5.3 48 102-150 6-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.8e-43 Score=328.76 Aligned_cols=291 Identities=25% Similarity=0.421 Sum_probs=240.8
Q ss_pred hHHHHHHHHHHHHhCcCCCCCCCCCCC-CCCCCC--cCceeeCCCCCCCcccceeEEEcCCCCCCCC-CCccccCCCCCC
Q 048561 19 LAAIYPIIQTFKNTITSDPFNITSTWI-GSDICK--YKGFYCGHPPDNLTAIALASIDFNGFELAAP-TLDGFIDQLPDL 94 (382)
Q Consensus 19 ~~~~~~aL~~~k~~~~~~~~~~~~~W~-~~~~C~--w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~-~~~~~~~~l~~L 94 (382)
.+.|++||++||+++. ||. .+++|. +.|+|. |.||.|+... ...+|+.|+++++++.+. .++..|+++++|
T Consensus 4 ~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~---~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 4 NPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDT---QTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSS---SCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCC---CCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 4457789999999996 665 788997 457898 9999997532 123799999999999871 245679999999
Q ss_pred CEEEcCC-CcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCC
Q 048561 95 SLFHANS-NKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNN 172 (382)
Q Consensus 95 ~~L~l~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~ 172 (382)
++|++++ |.+.+.+|..++++++|++|+|++|.+++.+|..+..+++|++|++++|.+++.+|..+. +++|++|++++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 158 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcC
Confidence 9999995 999999999999999999999999999999999999999999999999999988988776 89999999999
Q ss_pred CcCCCcCCcCCCC-C-cchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCC
Q 048561 173 NNFMQKLPQNLGS-T-PALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGP 250 (382)
Q Consensus 173 n~l~~~~p~~~~~-~-~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 250 (382)
|.+++.+|..+.. . .|++|++++|.+++.+|..+..+ . |+.|++++|.+.+..+..+..+++|+.|++++|.+++.
T Consensus 159 N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 9999888988877 4 78899999999988888888776 3 77788888887777777777788888888888887755
Q ss_pred CCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCC
Q 048561 251 LPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNC 317 (382)
Q Consensus 251 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~ 317 (382)
++. +..+++|++|++++|.+++.+|.++..+++|++|+|++|++++.+|....+++|+.+++++|+
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 554 667777888888888887777777777778888888888887766665666777766666665
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.7e-39 Score=334.70 Aligned_cols=299 Identities=26% Similarity=0.353 Sum_probs=217.6
Q ss_pred cchhhhhHHHHHHHHHHHHhCcCCCCCCCCCCC-CCCCCCcCceeeCCCCCCCcccceeEEEcCCCCCCCC---CC----
Q 048561 13 TFLDQRLAAIYPIIQTFKNTITSDPFNITSTWI-GSDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAP---TL---- 84 (382)
Q Consensus 13 ~~~~~~~~~~~~aL~~~k~~~~~~~~~~~~~W~-~~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~---~~---- 84 (382)
|.+.+..+.|++||++||+++. ||. .+++|. +.|+|.|.||.|+. .+|+.|+|+++.+.+. +.
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~~-------~~v~~L~L~~~~l~g~~~~l~~~l~ 74 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCRD-------DKVTSIDLSSKPLNVGFSAVSSSLL 74 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEET-------TEEEEEECTTSCCCEEHHHHHHHTT
T ss_pred CccccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEECC-------CcEEEEECCCCCcCCccCccChhHh
Confidence 4455667789999999999998 787 899996 66899999999972 2688888888887762 11
Q ss_pred ------------------ccccCCCCCCCEEEcCCCcCcccCCc--ccCCCCCCCEEEeecCCCCccCcccc-cCCCCCc
Q 048561 85 ------------------DGFIDQLPDLSLFHANSNKFSGTISP--KLAQLPYLYELDISNNKFSGTFPVAI-LGKNDLS 143 (382)
Q Consensus 85 ------------------~~~~~~l~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~ 143 (382)
+..|+++++|++|++++|.+++.+|. .++++++|++|+|++|.+++.+|..+ .++++|+
T Consensus 75 ~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 75 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp TCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred ccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 14577888888888888888887877 78888888888888888877776655 5677777
Q ss_pred EEEecCCCCCCCCCcc--------------------------cccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCc
Q 048561 144 FLDIRFNFFTGSVPPQ--------------------------VFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANN 196 (382)
Q Consensus 144 ~L~Ls~n~l~~~~p~~--------------------------~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n 196 (382)
+|++++|.+++..+.. ..+++|++|++++|.+++.+|. ++. .+|++|++++|
T Consensus 155 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence 7777777766544432 1245566666666666665555 444 66777777777
Q ss_pred ccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCC-CCCCEEeCcCCcCcccC
Q 048561 197 KFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCL-EKIERLNLSGNLLYGQV 275 (382)
Q Consensus 197 ~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~ 275 (382)
.+++.+|..+..+ ++|++|++++|.+.+..|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+
T Consensus 234 ~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 234 KLSGDFSRAISTC-TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp CCCSCHHHHTTTC-SSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred cCCCcccHHHhcC-CCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc
Confidence 7776666666665 66777777777766655543 66677777777777776777777664 78888888888888888
Q ss_pred chhhcCCCCCCEEEcccccCcccCC-c-ccCCCCCCEEEccCCCCC-CCCCc
Q 048561 276 PEVLCALDNLVNLSLSNNYFTGVGP-L-CRKLIKNGVLDVNRNCIH-YLPDQ 324 (382)
Q Consensus 276 p~~~~~l~~L~~L~L~~N~l~~~~~-~-~~~l~~L~~L~L~~N~l~-~lp~~ 324 (382)
|..+..+++|++|++++|++++..+ . +..+++|++|++++|.++ .+|+.
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~ 362 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence 8888888888888888888886544 3 677888888888888877 45653
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-38 Score=323.76 Aligned_cols=293 Identities=17% Similarity=0.262 Sum_probs=216.9
Q ss_pred hhHHHHHHHHHHHHhCcCCCCCC-------CCCCC-CCCCCCc---CceeeCCCCCCCcccceeEEEcCCCCCCCCCCcc
Q 048561 18 RLAAIYPIIQTFKNTITSDPFNI-------TSTWI-GSDICKY---KGFYCGHPPDNLTAIALASIDFNGFELAAPTLDG 86 (382)
Q Consensus 18 ~~~~~~~aL~~~k~~~~~~~~~~-------~~~W~-~~~~C~w---~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~~~~~ 86 (382)
....|++||.++|+++.++.+.. .++|. +.++|.| .||.|+.. .+|+.|+|+++++.| .++.
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~------~~V~~L~L~~~~l~g-~lp~ 99 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN------GRVTGLSLEGFGASG-RVPD 99 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT------CCEEEEECTTSCCEE-EECG
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC------CCEEEEEecCcccCC-cCCh
Confidence 44569999999999998665543 34897 5678999 99999764 379999999999988 4667
Q ss_pred ccCCCCCCCEEEcCCCc---------------------------------------------------------------
Q 048561 87 FIDQLPDLSLFHANSNK--------------------------------------------------------------- 103 (382)
Q Consensus 87 ~~~~l~~L~~L~l~~n~--------------------------------------------------------------- 103 (382)
.++++++|++|++++|.
T Consensus 100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 179 (636)
T 4eco_A 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179 (636)
T ss_dssp GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence 89999999999998883
Q ss_pred ---------------CcccCCcccCCCCCCCEEEeecCCCCcc-----------------Cccccc--CCCCCcEEEecC
Q 048561 104 ---------------FSGTISPKLAQLPYLYELDISNNKFSGT-----------------FPVAIL--GKNDLSFLDIRF 149 (382)
Q Consensus 104 ---------------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~ 149 (382)
+++ +|..++++++|++|+|++|.+++. +|..++ ++++|++|++++
T Consensus 180 ~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~ 258 (636)
T 4eco_A 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258 (636)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC
T ss_pred ccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC
Confidence 344 788889999999999999999875 888888 899999999999
Q ss_pred CCCCCCCCcccc-cCCCCEEeCCCCc-CCC-cCCcCCCC-------CcchhhhccCcccccccch--hHHHhhhhHHHHH
Q 048561 150 NFFTGSVPPQVF-MQTLDVLFLNNNN-FMQ-KLPQNLGS-------TPALYLTFANNKFTGSIPR--SIGKLSSTLIEVL 217 (382)
Q Consensus 150 n~l~~~~p~~~~-l~~L~~L~L~~n~-l~~-~~p~~~~~-------~~L~~L~l~~n~l~~~lp~--~l~~l~~~L~~L~ 217 (382)
|.+.+.+|..+. +++|++|++++|. +++ .+|..++. .+|++|++++|.++ .+|. .+.++ ++|+.|+
T Consensus 259 n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l-~~L~~L~ 336 (636)
T 4eco_A 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM-KKLGMLE 336 (636)
T ss_dssp CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC-TTCCEEE
T ss_pred CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC-CCCCEEe
Confidence 999888888776 8899999999998 877 77776654 57888888888888 7777 77776 6788888
Q ss_pred hhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCC-CCEEeCcCCcCcccCchhhcCCC--CCCEEEccccc
Q 048561 218 FLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEK-IERLNLSGNLLYGQVPEVLCALD--NLVNLSLSNNY 294 (382)
Q Consensus 218 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~ 294 (382)
+++|.+.|.+| .+..+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+.... +|++|++++|.
T Consensus 337 L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~ 413 (636)
T 4eco_A 337 CLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNE 413 (636)
T ss_dssp CCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred CcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCc
Confidence 88888876677 6666666666666666666 55666666666 666666666666 5555544433 55555555555
Q ss_pred CcccCC-ccc-------CCCCCCEEEccCCCCCCCCC
Q 048561 295 FTGVGP-LCR-------KLIKNGVLDVNRNCIHYLPD 323 (382)
Q Consensus 295 l~~~~~-~~~-------~l~~L~~L~L~~N~l~~lp~ 323 (382)
+++..| .+. .+++|+.|++++|.|+.+|.
T Consensus 414 l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~ 450 (636)
T 4eco_A 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450 (636)
T ss_dssp TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCT
T ss_pred CCCcchhhhcccccccccCCCCCEEECcCCccCcCCH
Confidence 555332 233 34445555555555554443
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7e-37 Score=318.35 Aligned_cols=280 Identities=27% Similarity=0.415 Sum_probs=205.8
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
.++.|++++|.+.+ .++..+.++++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 395 ~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 395 TLQELYLQNNGFTG-KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCEEECCSSEEEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CccEEECCCCcccc-ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 45566666666555 34455666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561 148 RFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG 225 (382)
Q Consensus 148 s~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~ 225 (382)
++|.+++.+|..+. +++|++|++++|.+++.+|..++. .+|++|++++|.+++.+|..+..+ ++|+.|++++|.+++
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-RSLIWLDLNTNLFNG 552 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC-TTCCEEECCSSEEES
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCCCEEECCCCccCC
Confidence 66666666665554 566666666666666666666555 556666666666666666666665 566666666666655
Q ss_pred CCch----------------------------------------------------------------------hcccCc
Q 048561 226 CLPY----------------------------------------------------------------------ELGFLR 235 (382)
Q Consensus 226 ~~~~----------------------------------------------------------------------~~~~l~ 235 (382)
.+|. .+..++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 5443 344567
Q ss_pred CCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEcc
Q 048561 236 EARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVN 314 (382)
Q Consensus 236 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~ 314 (382)
+|++|++++|++++.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+| .+..++.|++|+|+
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 89999999999999999999999999999999999999999999999999999999999998665 78999999999999
Q ss_pred CCCCCC-CCC--cccccchhhhccCCCCCCCCCCcCccCCCC
Q 048561 315 RNCIHY-LPD--QRSTHECALFFLQPRFCFYPSWYNFIPCSK 353 (382)
Q Consensus 315 ~N~l~~-lp~--~~~~~~~~~~~~np~~c~~~~~~~~~~c~~ 353 (382)
+|++++ +|+ ++..+....+.|||.+|+.+. ..|..
T Consensus 713 ~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l----~~C~~ 750 (768)
T 3rgz_A 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL----PRCDP 750 (768)
T ss_dssp SSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS----CCCCS
T ss_pred CCcccccCCCchhhccCCHHHhcCCchhcCCCC----cCCCC
Confidence 999998 665 344556678899999999763 26874
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8e-37 Score=318.37 Aligned_cols=288 Identities=17% Similarity=0.230 Sum_probs=238.6
Q ss_pred hhhHHHHHHHHHHHHhCcCCCCCCCCCCC------CCCC--CCc------------CceeeCCCCCCCcccceeEEEcCC
Q 048561 17 QRLAAIYPIIQTFKNTITSDPFNITSTWI------GSDI--CKY------------KGFYCGHPPDNLTAIALASIDFNG 76 (382)
Q Consensus 17 ~~~~~~~~aL~~~k~~~~~~~~~~~~~W~------~~~~--C~w------------~gv~c~~~~~~~~~~~l~~L~L~~ 76 (382)
.....|+.||++||+++. +| +|. ..++ |.| .||.|+.. .+|+.|+|++
T Consensus 265 ~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~------~~V~~L~Ls~ 332 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN------GRVTGLSLAG 332 (876)
T ss_dssp CHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT------SCEEEEECTT
T ss_pred ccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC------CCEEEEECcc
Confidence 345678999999999996 44 554 2356 999 99999863 3799999999
Q ss_pred CCCCCCCCccccCCCCCCCEEEc-CCCcCccc------------------------------------------------
Q 048561 77 FELAAPTLDGFIDQLPDLSLFHA-NSNKFSGT------------------------------------------------ 107 (382)
Q Consensus 77 ~~l~~~~~~~~~~~l~~L~~L~l-~~n~l~~~------------------------------------------------ 107 (382)
+++.| .++..++++++|++|+| ++|.+.|.
T Consensus 333 ~~L~G-~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~ 411 (876)
T 4ecn_A 333 FGAKG-RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN 411 (876)
T ss_dssp TCCEE-EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTC
T ss_pred CCCCC-cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhC
Confidence 99999 56788999999999999 76654333
Q ss_pred ----------------------------CCcccCCCCCCCEEEeecCCCCc-----------------cCccccc--CCC
Q 048561 108 ----------------------------ISPKLAQLPYLYELDISNNKFSG-----------------TFPVAIL--GKN 140 (382)
Q Consensus 108 ----------------------------~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~ 140 (382)
+|..++++++|++|+|++|.+++ .+|..++ +++
T Consensus 412 ~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 412 PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp TTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred ccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence 78889999999999999999997 3899988 999
Q ss_pred CCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCc-CCC-cCCcCCCC--------CcchhhhccCcccccccch--hHH
Q 048561 141 DLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNN-FMQ-KLPQNLGS--------TPALYLTFANNKFTGSIPR--SIG 207 (382)
Q Consensus 141 ~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~-l~~-~~p~~~~~--------~~L~~L~l~~n~l~~~lp~--~l~ 207 (382)
+|++|+|++|.+.+.+|..+. +++|++|++++|. +++ .+|..++. .+|++|++++|.++ .+|. .+.
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence 999999999999999998777 8999999999998 887 77876554 37999999999999 8998 888
Q ss_pred HhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCC-CCEEeCcCCcCcccCchhhcCCCC--
Q 048561 208 KLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEK-IERLNLSGNLLYGQVPEVLCALDN-- 284 (382)
Q Consensus 208 ~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~~-- 284 (382)
++ ++|+.|++++|.+. .+| .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..+..
T Consensus 571 ~L-~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 571 KM-VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV 645 (876)
T ss_dssp TC-TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred cC-CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCC
Confidence 87 78999999999998 777 8899999999999999999 78888888888 999999999998 77877766543
Q ss_pred CCEEEcccccCcccCCccc------CCCCCCEEEccCCCCCCCCC
Q 048561 285 LVNLSLSNNYFTGVGPLCR------KLIKNGVLDVNRNCIHYLPD 323 (382)
Q Consensus 285 L~~L~L~~N~l~~~~~~~~------~l~~L~~L~L~~N~l~~lp~ 323 (382)
|+.|+|++|++++.++.+. .+++|+.|+|++|.|+.+|.
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~ 690 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH
Confidence 8888888888877544322 33356666666666666554
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4e-34 Score=279.92 Aligned_cols=254 Identities=19% Similarity=0.199 Sum_probs=173.3
Q ss_pred cCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCccc--ccCCCCCcEEEecCCCCCCCCCcc-cc-cC
Q 048561 88 IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVA--ILGKNDLSFLDIRFNFFTGSVPPQ-VF-MQ 163 (382)
Q Consensus 88 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~-~~-l~ 163 (382)
|.++++|++|++++|.+++..|..|+++++|++|+|++|.+++.++.. +..+++|++|++++|.+++..|.. +. ++
T Consensus 75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 154 (455)
T 3v47_A 75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154 (455)
T ss_dssp TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence 444444444444444444444444444444444444444444333322 444555555555555555333433 22 55
Q ss_pred CCCEEeCCCCcCCCcCCcCCCC-----------------------------------CcchhhhccCcccccccchhHHH
Q 048561 164 TLDVLFLNNNNFMQKLPQNLGS-----------------------------------TPALYLTFANNKFTGSIPRSIGK 208 (382)
Q Consensus 164 ~L~~L~L~~n~l~~~~p~~~~~-----------------------------------~~L~~L~l~~n~l~~~lp~~l~~ 208 (382)
+|++|++++|.+++..+..+.. .+|++|++++|.+.+..|..+..
T Consensus 155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 234 (455)
T 3v47_A 155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD 234 (455)
T ss_dssp TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence 5555555555555444433321 24555666666655555544433
Q ss_pred hh--------------------------------------hhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCC
Q 048561 209 LS--------------------------------------STLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGP 250 (382)
Q Consensus 209 l~--------------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 250 (382)
.. .+|+.|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314 (455)
T ss_dssp HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence 20 2566777777777777888899999999999999999988
Q ss_pred CCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCCCCCcc----
Q 048561 251 LPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQR---- 325 (382)
Q Consensus 251 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~~---- 325 (382)
.+..|..+++|++|++++|.+++..+..+..+++|++|+|++|++++..+ .+..+++|+.|+|++|+|+++|+..
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 88899999999999999999998888999999999999999999999755 6889999999999999999988632
Q ss_pred cccchhhhccCCCCCC
Q 048561 326 STHECALFFLQPRFCF 341 (382)
Q Consensus 326 ~~~~~~~~~~np~~c~ 341 (382)
..+..+.+.+|++.|.
T Consensus 395 ~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCS 410 (455)
T ss_dssp TTCCEEECCSSCBCCC
T ss_pred CcccEEEccCCCcccC
Confidence 3566778889999987
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=5.6e-36 Score=281.16 Aligned_cols=276 Identities=19% Similarity=0.199 Sum_probs=215.0
Q ss_pred hhHHHHHHHHHHHHhCcCCCCCCCCCCC-----CCCCCCcCceeeCCCCCC---CcccceeEEEcCCCCCCCCCCccccC
Q 048561 18 RLAAIYPIIQTFKNTITSDPFNITSTWI-----GSDICKYKGFYCGHPPDN---LTAIALASIDFNGFELAAPTLDGFID 89 (382)
Q Consensus 18 ~~~~~~~aL~~~k~~~~~~~~~~~~~W~-----~~~~C~w~gv~c~~~~~~---~~~~~l~~L~L~~~~l~~~~~~~~~~ 89 (382)
..+.++.||++||+++..|++++...|. ..+.|.|.|+.|...... .....++.|++++|++.. ++..+.
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~--lp~~l~ 101 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ--FPDQAF 101 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSS--CCSCGG
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchh--cChhhh
Confidence 4456778999999999889998889993 456899999999531110 012368888888888884 455577
Q ss_pred CCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc--------
Q 048561 90 QLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-------- 161 (382)
Q Consensus 90 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-------- 161 (382)
++++|++|++++|.++ .+|..++.+++|++|+|++|.++ .+|..+..+++|++|++++|.+.+.+|..+.
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 7888888888888888 78888888888888888888888 7788888888888888888887777777553
Q ss_pred --cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCc
Q 048561 162 --MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARV 239 (382)
Q Consensus 162 --l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 239 (382)
+++|++|++++|.+ + .+|..+..+ ++|+.|++++|.+++ +|..+..+++|++
T Consensus 180 ~~l~~L~~L~L~~n~l-----------------------~-~lp~~l~~l-~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGI-----------------------R-SLPASIANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EESTTCCEEEEEEECC-----------------------C-CCCGGGGGC-TTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred ccCCCCCEEECcCCCc-----------------------C-cchHhhcCC-CCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 45555555555554 4 445555554 566666666676664 4556788889999
Q ss_pred cccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCC
Q 048561 240 FDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCI 318 (382)
Q Consensus 240 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l 318 (382)
|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|+|++|++.+..| .+..+++|+.+++..|.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 9999999988999999999999999999998888999999999999999999998887544 789999999999998888
Q ss_pred CCCCC
Q 048561 319 HYLPD 323 (382)
Q Consensus 319 ~~lp~ 323 (382)
..++.
T Consensus 314 ~~l~~ 318 (328)
T 4fcg_A 314 AQLDQ 318 (328)
T ss_dssp CC---
T ss_pred HHHhh
Confidence 87664
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.3e-34 Score=264.62 Aligned_cols=250 Identities=26% Similarity=0.349 Sum_probs=228.1
Q ss_pred CCCCEEEcCCCcCcc--cCCcccCCCCCCCEEEeec-CCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCE
Q 048561 92 PDLSLFHANSNKFSG--TISPKLAQLPYLYELDISN-NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDV 167 (382)
Q Consensus 92 ~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~ 167 (382)
.+++.|++++|.+++ .+|..++++++|++|++++ |.+.+.+|..|..+++|++|++++|.+++.+|..+. +++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 589999999999998 8999999999999999995 999999999999999999999999999988998776 899999
Q ss_pred EeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCcc
Q 048561 168 LFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNR 246 (382)
Q Consensus 168 L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 246 (382)
|++++|.+++.+|..+.. .+|++|++++|.+++.+|..++.+.+.|+.|++++|.+.+..|..+..+. |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999999999988877 88999999999999999999998844899999999999999999999997 9999999999
Q ss_pred CCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCC-CCCc
Q 048561 247 LTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHY-LPDQ 324 (382)
Q Consensus 247 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~-lp~~ 324 (382)
+++..+..+..+++|+.|++++|.+++.++. +..+++|++|+|++|+|++..+ .+..+++|+.|+|++|+|++ +|+.
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9988999999999999999999999976665 7889999999999999997555 68999999999999999995 6653
Q ss_pred --ccccchhhhccCCCCCCCC
Q 048561 325 --RSTHECALFFLQPRFCFYP 343 (382)
Q Consensus 325 --~~~~~~~~~~~np~~c~~~ 343 (382)
...+....+.+|++.|+.+
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTT
T ss_pred ccccccChHHhcCCCCccCCC
Confidence 3456677888999999854
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=5.2e-32 Score=266.71 Aligned_cols=289 Identities=19% Similarity=0.151 Sum_probs=233.9
Q ss_pred CcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecC
Q 048561 51 KYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNN 126 (382)
Q Consensus 51 ~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n 126 (382)
.|..+.|....-. .....++.|++++|++.+ +.+..|.++++|++|++++|.+++..|..|.++++|++|+|++|
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4667888653211 113478999999999998 56678999999999999999999888999999999999999999
Q ss_pred CCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccch
Q 048561 127 KFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPR 204 (382)
Q Consensus 127 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~ 204 (382)
.+++..+..|.++++|++|+|++|.+.+..+..+. +++|++|++++|.+++..+..+.. .+|++|++++|.+++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 99955556688999999999999999966666665 899999999999999888888877 8899999999999855445
Q ss_pred hHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccC------------------------CccCCCCCCcCCCCCCC
Q 048561 205 SIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDAS------------------------NNRLTGPLPCSLGCLEK 260 (382)
Q Consensus 205 ~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls------------------------~n~l~~~~p~~~~~l~~ 260 (382)
.+..+ ++|+.|++++|.+.+..+..+..+++|+.|+++ +|.+++..+..+..+++
T Consensus 171 ~l~~l-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 171 ALSHL-HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHTTC-TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred Hhccc-CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 56666 788889998888877666666666655555554 45555333345677888
Q ss_pred CCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCCCCCcc----cccchhhhcc
Q 048561 261 IERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQR----STHECALFFL 335 (382)
Q Consensus 261 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~~----~~~~~~~~~~ 335 (382)
|+.|++++|.+++..+..+..+++|+.|+|++|+++++.+ .+..+++|+.|+|++|.|+++|+.. ..+..+.+.+
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 9999999999987777788888999999999999998755 6889999999999999999988642 3556677889
Q ss_pred CCCCCC
Q 048561 336 QPRFCF 341 (382)
Q Consensus 336 np~~c~ 341 (382)
||+.|.
T Consensus 330 N~l~c~ 335 (477)
T 2id5_A 330 NPLACD 335 (477)
T ss_dssp SCEECS
T ss_pred CCccCc
Confidence 999886
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=3.6e-32 Score=275.27 Aligned_cols=301 Identities=18% Similarity=0.122 Sum_probs=205.9
Q ss_pred CCCCCCCCCCCCCCC-----CcCceeeCCC-----------CCCCcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEc
Q 048561 36 DPFNITSTWIGSDIC-----KYKGFYCGHP-----------PDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHA 99 (382)
Q Consensus 36 ~~~~~~~~W~~~~~C-----~w~gv~c~~~-----------~~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l 99 (382)
+....+++|.....| .|.++.|... ........++.++++++.+.. +++..|.++++|++|++
T Consensus 4 ~~~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~-lp~~~~~~l~~L~~L~L 82 (597)
T 3oja_B 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNL 82 (597)
T ss_dssp -------CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESE-ECTHHHHHCCCCSEEEC
T ss_pred cccccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCC-cCHHHHccCCCCcEEEC
Confidence 344556788755433 2665555421 011223466778888887776 45556777888888888
Q ss_pred CCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCccc-c-cCCCCEEeCCCCcCCC
Q 048561 100 NSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV-F-MQTLDVLFLNNNNFMQ 177 (382)
Q Consensus 100 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~-l~~L~~L~L~~n~l~~ 177 (382)
++|.+++..+..|+.+++|++|+|++|.+++..|..|+.+++|++|+|++|.++ .+|... . +++|++|++++|.+++
T Consensus 83 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCC
Confidence 888888777778888888888888888888766777788888888888888888 555543 3 7888888888888887
Q ss_pred cCCcCCCC-CcchhhhccCcccccccchhHHHh------------------------------------hhhHHHHHhhc
Q 048561 178 KLPQNLGS-TPALYLTFANNKFTGSIPRSIGKL------------------------------------SSTLIEVLFLN 220 (382)
Q Consensus 178 ~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l------------------------------------~~~L~~L~l~~ 220 (382)
..|..++. .+|++|++++|.+++.-...+..+ ..+|+.|++++
T Consensus 162 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~ 241 (597)
T 3oja_B 162 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQH 241 (597)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCS
T ss_pred CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCC
Confidence 77777766 778888888887774321211111 01344555555
Q ss_pred cccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC
Q 048561 221 NLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP 300 (382)
Q Consensus 221 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 300 (382)
|.+++ +..+..+++|+.|++++|.+++..|..|+.+++|+.|++++|.+++ +|..+..+++|+.|+|++|.++++++
T Consensus 242 n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~ 318 (597)
T 3oja_B 242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVER 318 (597)
T ss_dssp SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred CCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCc
Confidence 55553 3456777888888888888887777778888888888888888874 56666677888888888888887766
Q ss_pred cccCCCCCCEEEccCCCCCCCCC-cccccchhhhccCCCCCC
Q 048561 301 LCRKLIKNGVLDVNRNCIHYLPD-QRSTHECALFFLQPRFCF 341 (382)
Q Consensus 301 ~~~~l~~L~~L~L~~N~l~~lp~-~~~~~~~~~~~~np~~c~ 341 (382)
.+..+++|+.|+|++|.|+.+|. ..+.+..+.+.+|++.|.
T Consensus 319 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 319 NQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp GHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred ccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCCh
Confidence 67777888888888888887752 334455566667777663
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.9e-32 Score=262.98 Aligned_cols=271 Identities=19% Similarity=0.120 Sum_probs=195.2
Q ss_pred ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561 66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145 (382)
Q Consensus 66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 145 (382)
...++.++++++.+.. ++...+.++++|++|++++|.+++..+..|+.+++|++|+|++|.+++..|..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhh-CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4577888888888776 455557788888888888888887666788888888888888888887667778888888888
Q ss_pred EecCCCCCCCCCccc-c-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHh-------------
Q 048561 146 DIRFNFFTGSVPPQV-F-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKL------------- 209 (382)
Q Consensus 146 ~Ls~n~l~~~~p~~~-~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l------------- 209 (382)
++++|.++ .+|... . +++|++|++++|.+++..+..+.. .+|++|++++|.+++.-...+.++
T Consensus 123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc
Confidence 88888888 666554 3 788888888888888777776766 778888888887764321111111
Q ss_pred -----------------------hhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeC
Q 048561 210 -----------------------SSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNL 266 (382)
Q Consensus 210 -----------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 266 (382)
..+|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred CCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence 01344555555555432 35667777888888888777666777777788888888
Q ss_pred cCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCC-cccccchhhhccCCCCCC
Q 048561 267 SGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD-QRSTHECALFFLQPRFCF 341 (382)
Q Consensus 267 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~~~~~~~~~~~~np~~c~ 341 (382)
++|.++ .++..+..+++|++|++++|+++++++.+..+++|+.|++++|.|+.++. ....+..+.+.+|++.|.
T Consensus 280 ~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 280 SNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CSSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEHH
T ss_pred CCCcCc-ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccch
Confidence 888777 45556667778888888888877766666777788888888888877752 334555666777887774
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=1.9e-31 Score=260.96 Aligned_cols=257 Identities=16% Similarity=0.178 Sum_probs=222.4
Q ss_pred cccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcc--cCCCCCCCEEEeecCCCCccCccc-ccCCCC
Q 048561 65 TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPK--LAQLPYLYELDISNNKFSGTFPVA-ILGKND 141 (382)
Q Consensus 65 ~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~ 141 (382)
...+++.|++++|.+.+ ..+..|+++++|++|++++|.+++.++.. ++.+++|++|+|++|.+++..|.. +..+++
T Consensus 77 ~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 155 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR 155 (455)
T ss_dssp TCTTCCEEECTTCTTCE-ECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred ccccCCEEeCCCCccCc-cChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence 35689999999999987 46778999999999999999998765555 899999999999999999777766 789999
Q ss_pred CcEEEecCCCCCCCCCcccc-----------------------------------cCCCCEEeCCCCcCCCcCCcCCC--
Q 048561 142 LSFLDIRFNFFTGSVPPQVF-----------------------------------MQTLDVLFLNNNNFMQKLPQNLG-- 184 (382)
Q Consensus 142 L~~L~Ls~n~l~~~~p~~~~-----------------------------------l~~L~~L~L~~n~l~~~~p~~~~-- 184 (382)
|++|++++|.+++..+..+. +++|++|++++|.+++..+..+.
T Consensus 156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 99999999999866655432 25788899988887654433221
Q ss_pred --------------------------------------CCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC
Q 048561 185 --------------------------------------STPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC 226 (382)
Q Consensus 185 --------------------------------------~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~ 226 (382)
..++++|++++|.+.+..|..+..+ ++|+.|++++|.+.+.
T Consensus 236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~ 314 (455)
T 3v47_A 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKI 314 (455)
T ss_dssp TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEE
T ss_pred ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCccccc
Confidence 1368889999999998888888887 8999999999999988
Q ss_pred CchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCC
Q 048561 227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKL 305 (382)
Q Consensus 227 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l 305 (382)
.+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|.++..+++|++|+|++|+|+++++ .+..+
T Consensus 315 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 89999999999999999999998888899999999999999999998889999999999999999999999876 46899
Q ss_pred CCCCEEEccCCCCCCCCC
Q 048561 306 IKNGVLDVNRNCIHYLPD 323 (382)
Q Consensus 306 ~~L~~L~L~~N~l~~lp~ 323 (382)
++|+.|++++|+++.-.+
T Consensus 395 ~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCBCCCTT
T ss_pred CcccEEEccCCCcccCCC
Confidence 999999999999998544
No 13
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=7.9e-30 Score=239.53 Aligned_cols=260 Identities=20% Similarity=0.199 Sum_probs=201.1
Q ss_pred CCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeec
Q 048561 50 CKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISN 125 (382)
Q Consensus 50 C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~ 125 (382)
|.|+.+.|....-. .....++.|++++|.+.+ ..+..|.++++|++|++++|.+++..|..++.+++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc-cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 67888888643211 112468889999998887 4566788899999999999999877788888999999999999
Q ss_pred CCCCccCcccccCCCCCcEEEecCCCCCCCCCcc-cc-cCCCCEEeCCCCcCCC--cCCcCCCCCcchhhhccCcccccc
Q 048561 126 NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQ-VF-MQTLDVLFLNNNNFMQ--KLPQNLGSTPALYLTFANNKFTGS 201 (382)
Q Consensus 126 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~-l~~L~~L~L~~n~l~~--~~p~~~~~~~L~~L~l~~n~l~~~ 201 (382)
|.++ .+|..+. ++|++|++++|.++ .++.. +. +++|++|++++|.++. ..+..+...++++|++++|.++ .
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~-~ 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-G 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS-S
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC-c
Confidence 9888 6676655 78999999999988 45443 44 7889999999998853 5666666678888899988888 4
Q ss_pred cchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcC
Q 048561 202 IPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCA 281 (382)
Q Consensus 202 lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 281 (382)
+|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..
T Consensus 187 l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 IPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp CCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred cCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 665543 46788888888888777777888888888888888888766667778888888888888888 77777888
Q ss_pred CCCCCEEEcccccCcccCC-cccC------CCCCCEEEccCCCCC
Q 048561 282 LDNLVNLSLSNNYFTGVGP-LCRK------LIKNGVLDVNRNCIH 319 (382)
Q Consensus 282 l~~L~~L~L~~N~l~~~~~-~~~~------l~~L~~L~L~~N~l~ 319 (382)
+++|++|++++|+|+++++ .+.. ...|+.|++++|.+.
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 8888888888888887654 2222 456788888888876
No 14
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.4e-30 Score=240.15 Aligned_cols=262 Identities=22% Similarity=0.200 Sum_probs=223.7
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
.++.++++++.+.. ++..+ .++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~--ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA--VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSS--CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccc--cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 57889999999886 34333 379999999999999877889999999999999999999877899999999999999
Q ss_pred cCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCccccc--ccchhHHHhhhhHHHHHhhccccC
Q 048561 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTG--SIPRSIGKLSSTLIEVLFLNNLLT 224 (382)
Q Consensus 148 s~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~--~lp~~l~~l~~~L~~L~l~~n~l~ 224 (382)
++|.++ .+|..+. ++|++|++++|.+++..+..+.. .+|++|++++|.++. ..+..+..+ +|+.|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCC
Confidence 999999 7777665 89999999999998776666776 889999999999863 555556554 7999999999998
Q ss_pred CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccC
Q 048561 225 GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRK 304 (382)
Q Consensus 225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 304 (382)
+ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+.++..+++|++|++++|+++.++..+..
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~ 262 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD 262 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhc
Confidence 6 554443 7999999999999988888999999999999999999987778899999999999999999988888999
Q ss_pred CCCCCEEEccCCCCCCCCCcc----------cccchhhhccCCCCC
Q 048561 305 LIKNGVLDVNRNCIHYLPDQR----------STHECALFFLQPRFC 340 (382)
Q Consensus 305 l~~L~~L~L~~N~l~~lp~~~----------~~~~~~~~~~np~~c 340 (382)
+++|+.|++++|.|+++|... .....+.+.+||..+
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 999999999999999987532 123345566777653
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.9e-30 Score=262.90 Aligned_cols=271 Identities=19% Similarity=0.146 Sum_probs=172.1
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCccc-ccCCCCCcEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVA-ILGKNDLSFL 145 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L 145 (382)
..++.|++++|.+.. ++..+.++++|++|++++|.+++..|..+..+++|++|++++|.+.+.++.. +..+++|++|
T Consensus 278 ~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 278 SGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 345555555555543 3333455555555555555555444445555555555555555554444332 5555566666
Q ss_pred EecCCCCCCCC--Ccccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchh-HHHhhhhHHHHHhhc
Q 048561 146 DIRFNFFTGSV--PPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRS-IGKLSSTLIEVLFLN 220 (382)
Q Consensus 146 ~Ls~n~l~~~~--p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~-l~~l~~~L~~L~l~~ 220 (382)
++++|.+++.. +..+. +++|++|++++|.+.+..+..+.. .+|++|++++|.+.+..+.. +..+ ++|+.|++++
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~l~~ 434 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL-HLLKVLNLSH 434 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC-TTCCEEECTT
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc-ccCCEEECCC
Confidence 66666555332 22232 566666666666666555555555 56667777777666554433 4444 6677777777
Q ss_pred cccCCCCchhcccCcCCCccccCCccCCCC---CCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcc
Q 048561 221 NLLTGCLPYELGFLREARVFDASNNRLTGP---LPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG 297 (382)
Q Consensus 221 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 297 (382)
|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|.++..+++|++|+|++|++++
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 514 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence 777766677777777777777777777642 23456677778888888888877777778888888888888888887
Q ss_pred cCC-cccCCCCCCEEEccCCCCCCCCCcc----cccchhhhccCCCCCC
Q 048561 298 VGP-LCRKLIKNGVLDVNRNCIHYLPDQR----STHECALFFLQPRFCF 341 (382)
Q Consensus 298 ~~~-~~~~l~~L~~L~L~~N~l~~lp~~~----~~~~~~~~~~np~~c~ 341 (382)
..+ .+..++.| .|++++|.++++++.. ..+..+.+.+||+.|.
T Consensus 515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 515 SSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp GGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred CChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 654 67778888 8888888888876532 3456677889999987
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=3.9e-30 Score=261.08 Aligned_cols=135 Identities=18% Similarity=0.128 Sum_probs=107.2
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
..++.|||++|+|++ +.+..|.++++|++|+|++|.|++..+.+|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~-l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCC-CCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 478999999999997 5667899999999999999999977777899999999999999999866666788899999999
Q ss_pred ecCCCCCCCCCc-ccc-cCCCCEEeCCCCcCCC-cCCcCCCC-CcchhhhccCcccccccc
Q 048561 147 IRFNFFTGSVPP-QVF-MQTLDVLFLNNNNFMQ-KLPQNLGS-TPALYLTFANNKFTGSIP 203 (382)
Q Consensus 147 Ls~n~l~~~~p~-~~~-l~~L~~L~L~~n~l~~-~~p~~~~~-~~L~~L~l~~n~l~~~lp 203 (382)
+++|+++ .++. .+. +++|++|++++|.+.+ ..|..++. ..|++|++++|.+++..+
T Consensus 131 Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 131 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 9999988 4444 344 7888888888888765 34555554 667777777776654333
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.5e-30 Score=260.46 Aligned_cols=303 Identities=18% Similarity=0.190 Sum_probs=203.4
Q ss_pred CCCcCceeeCCCCCCCc------ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEE
Q 048561 49 ICKYKGFYCGHPPDNLT------AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELD 122 (382)
Q Consensus 49 ~C~w~gv~c~~~~~~~~------~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 122 (382)
.|.|.|+ |+......+ ...++.|++++|++.+ ..+..|.++++|++|++++|.+++..|.+|+.+++|++|+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE-ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCc-cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 3777777 654321111 2478999999999987 4567789999999999999999988888899999999999
Q ss_pred eecCCCCccCcccccCCCCCcEEEecCCCCCC-CCCcccc-cCCCCEEeCCCCcCCCcCC-cCCCC-CcchhhhccCccc
Q 048561 123 ISNNKFSGTFPVAILGKNDLSFLDIRFNFFTG-SVPPQVF-MQTLDVLFLNNNNFMQKLP-QNLGS-TPALYLTFANNKF 198 (382)
Q Consensus 123 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~-l~~L~~L~L~~n~l~~~~p-~~~~~-~~L~~L~l~~n~l 198 (382)
|++|.+++..+..|.++++|++|++++|.+++ .+|..+. +++|++|++++|.+.+.++ ..+.. .+|++|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 99999997777778999999999999999884 2344444 7888888888887545444 34554 6677777777776
Q ss_pred ccccchhHHHh-----------------------hhhHHHHHhhccccCCC-----------------------------
Q 048561 199 TGSIPRSIGKL-----------------------SSTLIEVLFLNNLLTGC----------------------------- 226 (382)
Q Consensus 199 ~~~lp~~l~~l-----------------------~~~L~~L~l~~n~l~~~----------------------------- 226 (382)
++..|..+..+ .++|+.|++++|.+.+.
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence 65555443321 24555556666555431
Q ss_pred --------------------------------------------------------------------------------
Q 048561 227 -------------------------------------------------------------------------------- 226 (382)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (382)
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence
Q ss_pred ----Cchhc-ccCcCCCccccCCccCCCCCC---cCCCCCCCCCEEeCcCCcCcccCc--hhhcCCCCCCEEEcccccCc
Q 048561 227 ----LPYEL-GFLREARVFDASNNRLTGPLP---CSLGCLEKIERLNLSGNLLYGQVP--EVLCALDNLVNLSLSNNYFT 296 (382)
Q Consensus 227 ----~~~~~-~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~ 296 (382)
+|..+ ..+++|++|++++|.+++.+| ..++.+++|++|++++|.+++..+ ..+..+++|++|++++|+++
T Consensus 321 ~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 12122 346667777777777665442 235566777777777777764322 34667777777777777777
Q ss_pred ccCCcccCCCCCCEEEccCCCCCCCCCccc-ccchhhhccCC-----CCCCCCCCcCccCCCC
Q 048561 297 GVGPLCRKLIKNGVLDVNRNCIHYLPDQRS-THECALFFLQP-----RFCFYPSWYNFIPCSK 353 (382)
Q Consensus 297 ~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~-~~~~~~~~~np-----~~c~~~~~~~~~~c~~ 353 (382)
+++..+..+++|+.|++++|.|+.+|...+ .+..+.+.+|. ..+..+..+.+..|..
T Consensus 401 ~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l 463 (549)
T 2z81_A 401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL 463 (549)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCcc
Confidence 766666777777777777777777665432 22223332222 2355666666666654
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=3.2e-30 Score=261.20 Aligned_cols=131 Identities=15% Similarity=0.029 Sum_probs=102.1
Q ss_pred hhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCC-CCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEE
Q 048561 211 STLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTG-PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLS 289 (382)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 289 (382)
++|+.|++++|.+.+..|..+..+++|++|++++|.+++ .+|..++.+++|++|++++|.+++..|.++..+++|++|+
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 455556666666665566666677777777777777775 3677788888888888888888888888888899999999
Q ss_pred cccccCcccCC-cccCCCCCCEEEccCCCCCCCCCccc----ccchhhhccCCCCCC
Q 048561 290 LSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQRS----THECALFFLQPRFCF 341 (382)
Q Consensus 290 L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~~~----~~~~~~~~~np~~c~ 341 (382)
+++|++++..+ .+..+++|+.|+|++|+|+.+|+.+. .+....+.+||+.|.
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccC
Confidence 99999988644 67889999999999999999887543 255667889999997
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8.9e-30 Score=238.89 Aligned_cols=263 Identities=21% Similarity=0.210 Sum_probs=149.6
Q ss_pred CCCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEee
Q 048561 49 ICKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDIS 124 (382)
Q Consensus 49 ~C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls 124 (382)
.|.|+.+.|....-. .....++.|++++|++.+ +.+..|+++++|++|++++|.+++..|..++.+++|++|+++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCE-eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 467777777642210 012356677777777766 344456777777777777777776666677777777777777
Q ss_pred cCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCC--cCCcCCCC-CcchhhhccCccccc
Q 048561 125 NNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQ--KLPQNLGS-TPALYLTFANNKFTG 200 (382)
Q Consensus 125 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~--~~p~~~~~-~~L~~L~l~~n~l~~ 200 (382)
+|.++ .+|..+. ++|++|++++|.+++..+..+. +++|++|++++|.+.. ..+..+.. .+|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 77776 5555443 5677777777777633333333 6677777777776642 34444443 55666666666665
Q ss_pred ccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhc
Q 048561 201 SIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC 280 (382)
Q Consensus 201 ~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 280 (382)
.+|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|.++.
T Consensus 185 ~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 3443322 34555555555555554555555555555555555555444444555555555555555555 4555555
Q ss_pred CCCCCCEEEcccccCcccCCc-cc------CCCCCCEEEccCCCCCC
Q 048561 281 ALDNLVNLSLSNNYFTGVGPL-CR------KLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 281 ~l~~L~~L~L~~N~l~~~~~~-~~------~l~~L~~L~L~~N~l~~ 320 (382)
.+++|++|++++|+|+++++. +. ....++.|++++|.+..
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 555555555555555554331 11 12445555555555543
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=8e-30 Score=256.24 Aligned_cols=270 Identities=20% Similarity=0.183 Sum_probs=189.2
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
.+++.|++++|.+.+ +.+..|+++++|++|++++|.+++..|.+|+++++|++|+|++|.++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 578999999999998 56678999999999999999999888888999999999999999998 67765 788889999
Q ss_pred ecCCCCCC-CCCcccc-cCCCCEEeCCCCcCCCc-------------------------CCcCCCC--------------
Q 048561 147 IRFNFFTG-SVPPQVF-MQTLDVLFLNNNNFMQK-------------------------LPQNLGS-------------- 185 (382)
Q Consensus 147 Ls~n~l~~-~~p~~~~-l~~L~~L~L~~n~l~~~-------------------------~p~~~~~-------------- 185 (382)
+++|.+++ .+|..+. +++|++|++++|.+++. .|..+..
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 207 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence 99888884 2344444 77788888777766431 1111110
Q ss_pred --------------------------------------------------------------------CcchhhhccCcc
Q 048561 186 --------------------------------------------------------------------TPALYLTFANNK 197 (382)
Q Consensus 186 --------------------------------------------------------------------~~L~~L~l~~n~ 197 (382)
.++++|++++|.
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 287 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence 034445555555
Q ss_pred cccccchhH-----------------------------------------------------HHhhhhHHHHHhhccccC
Q 048561 198 FTGSIPRSI-----------------------------------------------------GKLSSTLIEVLFLNNLLT 224 (382)
Q Consensus 198 l~~~lp~~l-----------------------------------------------------~~l~~~L~~L~l~~n~l~ 224 (382)
+++.+|..+ ..+ ++|++|++++|.++
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l-~~L~~L~l~~n~l~ 366 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP-SSFTFLNFTQNVFT 366 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSC-CCCCEEECCSSCCC
T ss_pred eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCC-CCceEEECCCCccc
Confidence 555555433 122 45666777777777
Q ss_pred CCCchhcccCcCCCccccCCccCCCC--CCcCCCCCCCCCEEeCcCCcCcccCchh-hcC--------------------
Q 048561 225 GCLPYELGFLREARVFDASNNRLTGP--LPCSLGCLEKIERLNLSGNLLYGQVPEV-LCA-------------------- 281 (382)
Q Consensus 225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~-------------------- 281 (382)
+..|..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++.+|.. +..
T Consensus 367 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 446 (562)
T 3a79_B 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446 (562)
T ss_dssp TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS
T ss_pred cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh
Confidence 66666667777777777777766642 2344555666666666666665423321 222
Q ss_pred -C-CCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCCc-c---cccchhhhccCCCCCC
Q 048561 282 -L-DNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQ-R---STHECALFFLQPRFCF 341 (382)
Q Consensus 282 -l-~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-~---~~~~~~~~~~np~~c~ 341 (382)
+ ++|++|+|++|+|+.+++.+..+++|+.|+|++|+|+++|+. + ..+....+.+||+.|.
T Consensus 447 ~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 447 CLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred hhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 2 577888888888877776677889999999999999999875 3 3455567789999986
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9.8e-30 Score=238.62 Aligned_cols=263 Identities=19% Similarity=0.178 Sum_probs=225.3
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
+++.++++++.+.. ++..+ .+++++|++++|.+++..+..|+++++|++|+|++|.+++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~--lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCS--CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccc--cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 57889999998886 33333 368999999999999777778999999999999999999777999999999999999
Q ss_pred cCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCccccc--ccchhHHHhhhhHHHHHhhccccC
Q 048561 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTG--SIPRSIGKLSSTLIEVLFLNNLLT 224 (382)
Q Consensus 148 s~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~--~lp~~l~~l~~~L~~L~l~~n~l~ 224 (382)
++|.++ .+|..+. ++|++|++++|.+++..+..+.. .+|++|++++|.+.. ..+..+..+ ++|+.|++++|.+.
T Consensus 108 s~n~l~-~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCC-CCcCEEECCCCccc
Confidence 999998 7776654 89999999999998877776776 889999999999863 566777777 88999999999988
Q ss_pred CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccC
Q 048561 225 GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRK 304 (382)
Q Consensus 225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 304 (382)
. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+.++..+++|++|++++|+++.++..+..
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~ 261 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT
T ss_pred c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhcc
Confidence 5 454443 8999999999999988888999999999999999999988788899999999999999999988888999
Q ss_pred CCCCCEEEccCCCCCCCCCccc----------ccchhhhccCCCCC
Q 048561 305 LIKNGVLDVNRNCIHYLPDQRS----------THECALFFLQPRFC 340 (382)
Q Consensus 305 l~~L~~L~L~~N~l~~lp~~~~----------~~~~~~~~~np~~c 340 (382)
+++|+.|++++|.|+++|.... ......+.+||..+
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 9999999999999999875322 23345566777654
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3e-30 Score=256.81 Aligned_cols=129 Identities=23% Similarity=0.253 Sum_probs=80.1
Q ss_pred hhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCC--CCCcCCCCC-------------------------CCCCE
Q 048561 211 STLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTG--PLPCSLGCL-------------------------EKIER 263 (382)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~~~~l-------------------------~~L~~ 263 (382)
++|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..++.+ ++|++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 345555556666555555555555555555555555553 223334444 44555
Q ss_pred EeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCCc-c---cccchhhhccCCCC
Q 048561 264 LNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQ-R---STHECALFFLQPRF 339 (382)
Q Consensus 264 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-~---~~~~~~~~~~np~~ 339 (382)
|++++|.+++.+|..+. ++|++|++++|+|+.++..+..+++|+.|++++|+|+.+|.. + ..+..+.+.+|++.
T Consensus 404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp EECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 55555554444443332 577777777777776666667888899999999999988875 3 34556677889988
Q ss_pred CC
Q 048561 340 CF 341 (382)
Q Consensus 340 c~ 341 (382)
|.
T Consensus 482 c~ 483 (520)
T 2z7x_B 482 CS 483 (520)
T ss_dssp CC
T ss_pred cc
Confidence 87
No 23
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=2.6e-30 Score=254.53 Aligned_cols=252 Identities=18% Similarity=0.142 Sum_probs=188.1
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
.+|+.|++++|.+.+ +....|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 80 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 158 (477)
T 2id5_A 80 FNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT 158 (477)
T ss_dssp TTCCEEECCSSCCCS-CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred ccCCEEECCCCcCCc-cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence 455666666666554 3444455666666666666666655555666666666666666666655555666666666666
Q ss_pred ecCCCCCCCCCcc-cc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhcccc
Q 048561 147 IRFNFFTGSVPPQ-VF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL 223 (382)
Q Consensus 147 Ls~n~l~~~~p~~-~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l 223 (382)
+++|.++ .++.. +. +++|+.|++++|.+.+..+..+.. .+|++|++++|...+.++...... .+|+.|++++|.+
T Consensus 159 l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l 236 (477)
T 2id5_A 159 LEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNL 236 (477)
T ss_dssp EESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT-CCCSEEEEESSCC
T ss_pred CCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC-ccccEEECcCCcc
Confidence 6666666 33332 22 566777777777666655555555 667778888777666677666554 4788999999999
Q ss_pred CCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cc
Q 048561 224 TGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LC 302 (382)
Q Consensus 224 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~ 302 (382)
+...+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|+.|+|++|+|+++++ .+
T Consensus 237 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316 (477)
T ss_dssp CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence 86666788999999999999999998778889999999999999999998889999999999999999999999876 46
Q ss_pred cCCCCCCEEEccCCCCCCC
Q 048561 303 RKLIKNGVLDVNRNCIHYL 321 (382)
Q Consensus 303 ~~l~~L~~L~L~~N~l~~l 321 (382)
..+++|+.|+|++|+++.-
T Consensus 317 ~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 317 HSVGNLETLILDSNPLACD 335 (477)
T ss_dssp SCGGGCCEEECCSSCEECS
T ss_pred CCCcccCEEEccCCCccCc
Confidence 8899999999999998764
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=1e-29 Score=261.01 Aligned_cols=273 Identities=17% Similarity=0.147 Sum_probs=211.1
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCccc--CCcccCC--CCCCCEEEeecCCCCccCcccccCCCCC
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGT--ISPKLAQ--LPYLYELDISNNKFSGTFPVAILGKNDL 142 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~l~~--l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 142 (382)
..++.|++++|.+.+ ..+..|.++++|++|++++|.+... ....+.. .++|++|++++|++++..|..+..+++|
T Consensus 329 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp TTCCEEECCSCCBCC-CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCEEECCCCccCC-CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 455666666666665 3445566666666666666653321 1112222 2466777777777777777788888999
Q ss_pred cEEEecCCCCCCCCCcc-cc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccc--cccchhHHHhhhhHHHHH
Q 048561 143 SFLDIRFNFFTGSVPPQ-VF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFT--GSIPRSIGKLSSTLIEVL 217 (382)
Q Consensus 143 ~~L~Ls~n~l~~~~p~~-~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~--~~lp~~l~~l~~~L~~L~ 217 (382)
++|++++|.+.+.++.. +. +++|++|++++|.+++..+..+.. .++++|++++|.+. +.+|..+..+ ++|+.|+
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l-~~L~~L~ 486 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL-RNLTILD 486 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC-TTCCEEE
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC-CCCCEEE
Confidence 99999999988777643 33 788999999999888777777776 78889999998876 4677888877 7899999
Q ss_pred hhccccCCCCchhcccCcCCCccccCCccCCCCC--------CcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEE
Q 048561 218 FLNNLLTGCLPYELGFLREARVFDASNNRLTGPL--------PCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLS 289 (382)
Q Consensus 218 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 289 (382)
+++|.+++..+..+.++++|++|++++|.+++.. ...+..+++|++|++++|+++...+..+..+++|+.|+
T Consensus 487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence 9999999888888999999999999999987532 12377889999999999999954445789999999999
Q ss_pred cccccCcccCCc-ccCCCCCCEEEccCCCCCCCCCc-----ccccchhhhccCCCCCC
Q 048561 290 LSNNYFTGVGPL-CRKLIKNGVLDVNRNCIHYLPDQ-----RSTHECALFFLQPRFCF 341 (382)
Q Consensus 290 L~~N~l~~~~~~-~~~l~~L~~L~L~~N~l~~lp~~-----~~~~~~~~~~~np~~c~ 341 (382)
|++|+++++++. +..+++|+.|+|++|.|+++++. ...+....+.+||+.|+
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 999999998774 68899999999999999998753 34566778889999998
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.1e-30 Score=245.45 Aligned_cols=274 Identities=16% Similarity=0.173 Sum_probs=225.2
Q ss_pred CCCCCCcCceeeCCCCCCCc------ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCC
Q 048561 46 GSDICKYKGFYCGHPPDNLT------AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLY 119 (382)
Q Consensus 46 ~~~~C~w~gv~c~~~~~~~~------~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 119 (382)
....|.|.++ |+......+ ..+++.|++++|++.+ +....|.++++|++|++++|.+++..+..|+++++|+
T Consensus 26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 4456899987 653322211 2479999999999997 5566799999999999999999988888899999999
Q ss_pred EEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCc--ccc-cCCCCEEeCCCCc-CCCcCCcCCCC-Ccchhhhcc
Q 048561 120 ELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPP--QVF-MQTLDVLFLNNNN-FMQKLPQNLGS-TPALYLTFA 194 (382)
Q Consensus 120 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~-l~~L~~L~L~~n~-l~~~~p~~~~~-~~L~~L~l~ 194 (382)
+|++++|.+++..+..+..+++|++|++++|.++ .+|. .+. +++|++|++++|. +.+..+..+.. .+|++|+++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 182 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence 9999999999554455899999999999999999 6666 343 8999999999994 66555667776 889999999
Q ss_pred CcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCC---CCCCCCEEeCcCCcC
Q 048561 195 NNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLG---CLEKIERLNLSGNLL 271 (382)
Q Consensus 195 ~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~L~~N~l 271 (382)
+|.+++..|..+..+ ++|++|++++|.+.......+..+++|+.|++++|.+++..+..+. ....++.++++++.+
T Consensus 183 ~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 183 ASDLQSYEPKSLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp ETTCCEECTTTTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred CCCcCccCHHHHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence 999998888888887 7899999999998754444456799999999999999975544433 456788999999988
Q ss_pred cc----cCchhhcCCCCCCEEEcccccCcccCCc-ccCCCCCCEEEccCCCCCCCCC
Q 048561 272 YG----QVPEVLCALDNLVNLSLSNNYFTGVGPL-CRKLIKNGVLDVNRNCIHYLPD 323 (382)
Q Consensus 272 ~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~l~~lp~ 323 (382)
.+ .+|.++..+++|++|++++|+++.++.. +..+++|+.|++++|+++.-++
T Consensus 262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 75 4678889999999999999999988776 5899999999999999988543
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=7.4e-30 Score=244.97 Aligned_cols=270 Identities=17% Similarity=0.096 Sum_probs=211.7
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcc-cccCCCCCcEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPV-AILGKNDLSFL 145 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L 145 (382)
.+++.|++++|.+.+ +.+..|+++++|++|++++|.+++..|..++.+++|++|++++|.++ .+|. .+..+++|++|
T Consensus 69 ~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 69 RQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred ccCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEE
Confidence 578889999998887 45567888999999999999998777778888999999999999988 4454 45788999999
Q ss_pred EecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC--------------------------------------C
Q 048561 146 DIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS--------------------------------------T 186 (382)
Q Consensus 146 ~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~--------------------------------------~ 186 (382)
++++|.+++..+..+. +++|++|++++|.+++.....+.. .
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 226 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 226 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCS
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccc
Confidence 9999998855555454 788888888888876532221111 2
Q ss_pred cchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeC
Q 048561 187 PALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNL 266 (382)
Q Consensus 187 ~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 266 (382)
++++|++++|.+++. ..+..+ ++|+.|++++|.+.+..+..+..+++|++|++++|.+++ ++..+..+++|++|++
T Consensus 227 ~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 227 ELTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 302 (390)
T ss_dssp SCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEEC
T ss_pred cccEEECCCCCCccc--HHHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEEC
Confidence 466677777777643 456666 789999999999998889999999999999999999984 6767788999999999
Q ss_pred cCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCC--CcccccchhhhccCCCCCCCCC
Q 048561 267 SGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLP--DQRSTHECALFFLQPRFCFYPS 344 (382)
Q Consensus 267 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp--~~~~~~~~~~~~~np~~c~~~~ 344 (382)
++|.+. .+|..+..+++|++|++++|.|+.++ +..+++|+.|++++|+++.-. ..+.......+.+++..|....
T Consensus 303 ~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDY 379 (390)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCSCCCTTC
T ss_pred CCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchhHHHHHHHHHhhcccccCceecccc
Confidence 999999 67777888999999999999999874 678899999999999987621 1111222334556677776443
Q ss_pred C
Q 048561 345 W 345 (382)
Q Consensus 345 ~ 345 (382)
.
T Consensus 380 ~ 380 (390)
T 3o6n_A 380 Q 380 (390)
T ss_dssp E
T ss_pred c
Confidence 3
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=7.3e-30 Score=260.06 Aligned_cols=265 Identities=16% Similarity=0.169 Sum_probs=199.9
Q ss_pred cceeEEEcCCCCCCCCCCcc--ccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCC-Cc
Q 048561 67 IALASIDFNGFELAAPTLDG--FIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKND-LS 143 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~ 143 (382)
.+++.|++++|+++. ++. .++++++|++|++++|.++|.+| .++.+++|++|++++|.++ .+|..+..+++ |+
T Consensus 305 ~~L~~L~L~~n~l~~--ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 305 EKIQIIYIGYNNLKT--FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVE 380 (636)
T ss_dssp GTCCEEECCSSCCSS--CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCC
T ss_pred CCCCEEECCCCcCCc--cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCc
Confidence 355666666666653 343 56677777777777777776676 6677777777777777776 66777777777 88
Q ss_pred EEEecCCCCCCCCCcccc---cCCCCEEeCCCCcCCCcCCcCCC-------C-CcchhhhccCcccccccchhHHHhhhh
Q 048561 144 FLDIRFNFFTGSVPPQVF---MQTLDVLFLNNNNFMQKLPQNLG-------S-TPALYLTFANNKFTGSIPRSIGKLSST 212 (382)
Q Consensus 144 ~L~Ls~n~l~~~~p~~~~---l~~L~~L~L~~n~l~~~~p~~~~-------~-~~L~~L~l~~n~l~~~lp~~l~~l~~~ 212 (382)
+|++++|.++ .+|..+. +++|++|++++|.+++..|..+. . .+|++|++++|.++ .+|..++...++
T Consensus 381 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~ 458 (636)
T 4eco_A 381 NLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSP 458 (636)
T ss_dssp EEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCC
T ss_pred EEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCC
Confidence 8888888887 7776555 23788888888888887777766 3 57888888888888 677776653378
Q ss_pred HHHHHhhccccCCCCch-hcccC-------cCCCccccCCccCCCCCCcCCC--CCCCCCEEeCcCCcCcccCchhhcCC
Q 048561 213 LIEVLFLNNLLTGCLPY-ELGFL-------REARVFDASNNRLTGPLPCSLG--CLEKIERLNLSGNLLYGQVPEVLCAL 282 (382)
Q Consensus 213 L~~L~l~~n~l~~~~~~-~~~~l-------~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l 282 (382)
|+.|++++|.++ .+|. .+... ++|++|++++|.++ .+|..+. .+++|++|++++|++++ +|..+..+
T Consensus 459 L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l 535 (636)
T 4eco_A 459 LSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS 535 (636)
T ss_dssp CSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC
T ss_pred CCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcC
Confidence 899999999988 4443 33333 38999999999998 6787776 88999999999999996 88888899
Q ss_pred CCCCEEEc------ccccCcccCC-cccCCCCCCEEEccCCCCCCCCCcc-cccchhhhccCCCCC
Q 048561 283 DNLVNLSL------SNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQR-STHECALFFLQPRFC 340 (382)
Q Consensus 283 ~~L~~L~L------~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~~-~~~~~~~~~~np~~c 340 (382)
++|++|+| ++|++.+..| .+..+++|+.|+|++|.|+.+|+.+ ..+..+.+.+|+..|
T Consensus 536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNIS 601 (636)
T ss_dssp SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCTTCCEEECCSCTTCE
T ss_pred CCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHhCcCCEEECcCCCCcc
Confidence 99999999 4566776544 7888999999999999998888754 345556666777766
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.1e-29 Score=257.12 Aligned_cols=278 Identities=16% Similarity=0.075 Sum_probs=220.3
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
..|+.|++++|.+.+ +.+..|+++++|++|++++|.+++..|..|+.+++|++|+|++|.+++..+..|..+++|++|+
T Consensus 75 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 75 RQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 478889999998887 4566788899999999999998887777788899999999999998854444568888999999
Q ss_pred ecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC--------------------------------------Cc
Q 048561 147 IRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS--------------------------------------TP 187 (382)
Q Consensus 147 Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~--------------------------------------~~ 187 (382)
|++|.+++..|..+. +++|++|++++|.+++.....+.. .+
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~ 233 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE 233 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence 999998866665555 788888888888877543222211 24
Q ss_pred chhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCc
Q 048561 188 ALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLS 267 (382)
Q Consensus 188 L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 267 (382)
|+.|++++|.+++ +..+..+ ++|+.|++++|.+.+..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+++
T Consensus 234 L~~L~L~~n~l~~--~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 234 LTILKLQHNNLTD--TAWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp CCEEECCSSCCCC--CGGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECC
T ss_pred CCEEECCCCCCCC--ChhhccC-CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECC
Confidence 6667777777774 3556776 889999999999999999999999999999999999995 67777889999999999
Q ss_pred CCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCC--CCcccccchhhhccCCCCCCCCCC
Q 048561 268 GNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYL--PDQRSTHECALFFLQPRFCFYPSW 345 (382)
Q Consensus 268 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l--p~~~~~~~~~~~~~np~~c~~~~~ 345 (382)
+|.+. .+|..+..+++|+.|+|++|.|++.+ +..+++|+.|+|++|.++.- ...+.......+.+++..|.....
T Consensus 310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 386 (597)
T 3oja_B 310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQ 386 (597)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTTTBCCCCCCCCTTCE
T ss_pred CCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhhccccccccCCcchh
Confidence 99999 78888889999999999999999874 66889999999999998752 122222333445677888887666
Q ss_pred cCccCCC
Q 048561 346 YNFIPCS 352 (382)
Q Consensus 346 ~~~~~c~ 352 (382)
.....|-
T Consensus 387 ~~~~~cc 393 (597)
T 3oja_B 387 LEHGLCC 393 (597)
T ss_dssp EETTEEE
T ss_pred ccCCccc
Confidence 5555553
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=3.1e-29 Score=263.30 Aligned_cols=110 Identities=17% Similarity=0.184 Sum_probs=58.3
Q ss_pred HHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEccc
Q 048561 213 LIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSN 292 (382)
Q Consensus 213 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 292 (382)
++.|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence 33344444444444444445555555555555555544455555555555555555555544455555555555555555
Q ss_pred ccCcccCC-cccCCCCCCEEEccCCCCCCCC
Q 048561 293 NYFTGVGP-LCRKLIKNGVLDVNRNCIHYLP 322 (382)
Q Consensus 293 N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp 322 (382)
|+++++.+ .+..+++|+.|++++|.+++++
T Consensus 348 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 348 NHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp CCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred CCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 55555443 3455555555555555555543
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=6.1e-29 Score=251.79 Aligned_cols=252 Identities=17% Similarity=0.119 Sum_probs=226.6
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
.++.|++++|.+.+ +.+..|+++++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 255 ~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSS-CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCc-cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 79999999999998 56777999999999999999999 78999999999999999999999777889999999999999
Q ss_pred cCCCCCCCCCccc-c-cCCCCEEeCCCCcCCCcC--CcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccc
Q 048561 148 RFNFFTGSVPPQV-F-MQTLDVLFLNNNNFMQKL--PQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNL 222 (382)
Q Consensus 148 s~n~l~~~~p~~~-~-l~~L~~L~L~~n~l~~~~--p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~ 222 (382)
++|.+.+.++... . +++|++|++++|.+++.. +..+.. .+|++|++++|.+.+..+..+..+ ++|+.|++++|.
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~ 411 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTR 411 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEECTTCC
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEECCCCc
Confidence 9999998887753 3 899999999999998765 666666 889999999999997778888887 789999999999
Q ss_pred cCCCCch-hcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCccc---CchhhcCCCCCCEEEcccccCccc
Q 048561 223 LTGCLPY-ELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQ---VPEVLCALDNLVNLSLSNNYFTGV 298 (382)
Q Consensus 223 l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~ 298 (382)
+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|+++++
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 9877654 488999999999999999988899999999999999999999862 336788999999999999999997
Q ss_pred CC-cccCCCCCCEEEccCCCCCCCC
Q 048561 299 GP-LCRKLIKNGVLDVNRNCIHYLP 322 (382)
Q Consensus 299 ~~-~~~~l~~L~~L~L~~N~l~~lp 322 (382)
++ .+..+++|+.|+|++|++++++
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGG
T ss_pred ChhhhccccCCCEEECCCCccCcCC
Confidence 65 6899999999999999999864
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=3.8e-29 Score=234.59 Aligned_cols=286 Identities=16% Similarity=0.154 Sum_probs=211.4
Q ss_pred chhhhhHHHHHHHHHHHHhCcCCCCCCCCCCCC---CCCCCcCceeeCCCCCCCcccceeEEEcCCCCCCCC---CCccc
Q 048561 14 FLDQRLAAIYPIIQTFKNTITSDPFNITSTWIG---SDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAP---TLDGF 87 (382)
Q Consensus 14 ~~~~~~~~~~~aL~~~k~~~~~~~~~~~~~W~~---~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~---~~~~~ 87 (382)
++.++.+..+++...-.++-..|...++..|.. .|+|.|.+.-|......... ....|. ..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~----------~~~~g~~~~~~~~~ 74 (328)
T 4fcg_A 5 HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI----------ETRTGRALKATADL 74 (328)
T ss_dssp ------------CCCC--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTS----------CCSHHHHHHHHHHH
T ss_pred cccccccccccceeeeccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccc----------cccCCcchhhhHHH
Confidence 344444444444444444333344445566763 57888887776321111000 001110 00111
Q ss_pred --cCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCC
Q 048561 88 --IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQT 164 (382)
Q Consensus 88 --~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~ 164 (382)
.....+++.|++++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+. +++
T Consensus 75 l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~ 151 (328)
T 4fcg_A 75 LEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNR 151 (328)
T ss_dssp HHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTT
T ss_pred HhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcC
Confidence 124578999999999999 78888999999999999999999 89999999999999999999999 8888776 899
Q ss_pred CCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCC
Q 048561 165 LDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASN 244 (382)
Q Consensus 165 L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 244 (382)
|++|++++|.+.+.+|..+... .++..+..+ ++|+.|++++|.++ .+|..+..+++|++|++++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~--------------~~~~~~~~l-~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~ 215 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLAST--------------DASGEHQGL-VNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN 215 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEE--------------C-CCCEEES-TTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEES
T ss_pred CCEEECCCCCCccccChhHhhc--------------cchhhhccC-CCCCEEECcCCCcC-cchHhhcCCCCCCEEEccC
Confidence 9999999998888888765431 111123334 67899999999998 7888899999999999999
Q ss_pred ccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCC-CC
Q 048561 245 NRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHY-LP 322 (382)
Q Consensus 245 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~-lp 322 (382)
|.+++ +|..++.+++|++|++++|.+.+.+|..+..+++|++|+|++|++.+..+ .+..+++|+.|+|++|++.+ +|
T Consensus 216 N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 216 SPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp SCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 99994 67789999999999999999999999999999999999999998888555 78999999999999988655 78
Q ss_pred Ccccccc
Q 048561 323 DQRSTHE 329 (382)
Q Consensus 323 ~~~~~~~ 329 (382)
+.+..+.
T Consensus 295 ~~l~~L~ 301 (328)
T 4fcg_A 295 SLIAQLP 301 (328)
T ss_dssp GGGGGSC
T ss_pred HHHhhcc
Confidence 7655433
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2e-29 Score=234.00 Aligned_cols=247 Identities=19% Similarity=0.194 Sum_probs=181.9
Q ss_pred CCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCccc--CCcccCCCCCCCEEEe
Q 048561 50 CKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGT--ISPKLAQLPYLYELDI 123 (382)
Q Consensus 50 C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~L 123 (382)
|.|.++.|....-. ....+++.|++++|++.. +....|+++++|++|++++|.++.. .+..+..+++|++|++
T Consensus 7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 78999999763211 112467778888887775 4555577788888888888877632 3556666778888888
Q ss_pred ecCCCCccCcccccCCCCCcEEEecCCCCCCCCC-cccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCccccc
Q 048561 124 SNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVP-PQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTG 200 (382)
Q Consensus 124 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~ 200 (382)
++|.++ .+|..+..+++|++|++++|.+++..+ ..+. +++|++|++++|.+.+..+..+.. .+|++|++++|.+.+
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 888777 566667777888888888887773332 1222 677788888777776666655554 555666666555442
Q ss_pred ccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhc
Q 048561 201 SIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC 280 (382)
Q Consensus 201 ~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 280 (382)
...|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.
T Consensus 165 ------------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 165 ------------------------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp ------------------------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred ------------------------ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence 03456678888999999999999977788888999999999999999977777888
Q ss_pred CCCCCCEEEcccccCcccCC-cccCCC-CCCEEEccCCCCCCCC
Q 048561 281 ALDNLVNLSLSNNYFTGVGP-LCRKLI-KNGVLDVNRNCIHYLP 322 (382)
Q Consensus 281 ~l~~L~~L~L~~N~l~~~~~-~~~~l~-~L~~L~L~~N~l~~lp 322 (382)
.+++|++|++++|++++..+ .+..++ +|+.|+|++|.++.-.
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 89999999999999998655 567774 8999999999998754
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.96 E-value=5.3e-28 Score=248.22 Aligned_cols=256 Identities=17% Similarity=0.110 Sum_probs=168.4
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
.+++.|++++|.+.+ +.+..|+++++|++|++++|.+++..|..++++++|++|+|++|.+++..+..|.++++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCC-CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCC-cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 478889999988887 5666788888888888888888887788888888888888888888844444688888888888
Q ss_pred ecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHh-hhhHHHHHhhcccc
Q 048561 147 IRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKL-SSTLIEVLFLNNLL 223 (382)
Q Consensus 147 Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l-~~~L~~L~l~~n~l 223 (382)
+++|.+++..+..+. +++|++|++++|.+++..+..++. .+|++|++++|.+++..+..+... ..+|+.|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 888888744444444 788888888888888777777765 678888888887775555444321 14567777777766
Q ss_pred CCCCchhcccC---------------------------cC--------------------------CCccccCCccCCCC
Q 048561 224 TGCLPYELGFL---------------------------RE--------------------------ARVFDASNNRLTGP 250 (382)
Q Consensus 224 ~~~~~~~~~~l---------------------------~~--------------------------L~~L~Ls~n~l~~~ 250 (382)
.+..+..+..+ ++ |+.|++++|.+++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 65555443322 23 45555555555444
Q ss_pred CCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCccc-----CC-----cccCCCCCCEEEccCCCCCC
Q 048561 251 LPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV-----GP-----LCRKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 251 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----~~-----~~~~l~~L~~L~L~~N~l~~ 320 (382)
.+..++.+++|++|++++|.+.+..|.++..+++|+.|++++|...+. .+ .+..+++|+.|++++|.+++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 444445555555555555555544444455555555555544432210 01 34556667777777777776
Q ss_pred CCC
Q 048561 321 LPD 323 (382)
Q Consensus 321 lp~ 323 (382)
+++
T Consensus 344 ~~~ 346 (680)
T 1ziw_A 344 IKS 346 (680)
T ss_dssp CCT
T ss_pred CCh
Confidence 543
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1e-28 Score=229.20 Aligned_cols=242 Identities=21% Similarity=0.208 Sum_probs=193.6
Q ss_pred eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCc--cCcccccCCCCCcEEEe
Q 048561 70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSG--TFPVAILGKNDLSFLDI 147 (382)
Q Consensus 70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L 147 (382)
+.++.++++++. ++..+ .++|++|++++|.++...+..|+++++|++|+|++|.++. ..+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~--ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTS--VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSS--CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCccc--CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 468888888886 33322 3689999999999995444557999999999999999983 23667778999999999
Q ss_pred cCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCC-cCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccC
Q 048561 148 RFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLP-QNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLT 224 (382)
Q Consensus 148 s~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p-~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~ 224 (382)
++|.+. .++..+. +++|++|++++|.+++..+ ..+.. .+|++|+++ +|.+.
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-------------------------~n~l~ 139 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS-------------------------HTHTR 139 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT-------------------------TSCCE
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECC-------------------------CCcCC
Confidence 999998 5666554 8999999999998875543 23333 444445444 44444
Q ss_pred CCCchhcccCcCCCccccCCccCCC-CCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cc
Q 048561 225 GCLPYELGFLREARVFDASNNRLTG-PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LC 302 (382)
Q Consensus 225 ~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~ 302 (382)
+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.++++++ .+
T Consensus 140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 4556677889999999999999986 578889999999999999999998888999999999999999999999776 67
Q ss_pred cCCCCCCEEEccCCCCCCCCC-cc----cccchhhhccCCCCCC
Q 048561 303 RKLIKNGVLDVNRNCIHYLPD-QR----STHECALFFLQPRFCF 341 (382)
Q Consensus 303 ~~l~~L~~L~L~~N~l~~lp~-~~----~~~~~~~~~~np~~c~ 341 (382)
..+++|+.|++++|.+++.++ .+ ..+..+.+.+|++.|.
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 889999999999999998643 22 2455677789999886
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.1e-27 Score=249.76 Aligned_cols=261 Identities=15% Similarity=0.135 Sum_probs=163.2
Q ss_pred ceeEEEcCCCCCCCCCCcc--ccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCC-CcE
Q 048561 68 ALASIDFNGFELAAPTLDG--FIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKND-LSF 144 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~ 144 (382)
+++.|++++|.+.. ++. .++++++|+.|++++|.++ .+| .++.+++|++|+|++|.++ .+|..+..+++ |++
T Consensus 549 ~L~~L~Ls~N~L~~--ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 549 KIQIFYMGYNNLEE--FPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEG 623 (876)
T ss_dssp TCCEEECCSSCCCB--CCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCE
T ss_pred CccEEEeeCCcCCc--cCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCE
Confidence 45555555555542 233 4555555666666665555 455 5555556666666666655 55555555555 666
Q ss_pred EEecCCCCCCCCCcccc-c--CCCCEEeCCCCcCCCcCCcCC------CCCcchhhhccCcccccccchhHHHhhhhHHH
Q 048561 145 LDIRFNFFTGSVPPQVF-M--QTLDVLFLNNNNFMQKLPQNL------GSTPALYLTFANNKFTGSIPRSIGKLSSTLIE 215 (382)
Q Consensus 145 L~Ls~n~l~~~~p~~~~-l--~~L~~L~L~~n~l~~~~p~~~------~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~ 215 (382)
|+|++|.++ .+|..+. + ++|+.|++++|.+.+.+|... ...+|++|++++|.++ .+|..++...++|+.
T Consensus 624 L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~ 701 (876)
T 4ecn_A 624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPIST 701 (876)
T ss_dssp EECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSE
T ss_pred EECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCE
Confidence 666666655 5554443 2 236666666666655444322 1135667777777777 667666533367788
Q ss_pred HHhhccccCCCCchhccc--------CcCCCccccCCccCCCCCCcCCC--CCCCCCEEeCcCCcCcccCchhhcCCCCC
Q 048561 216 VLFLNNLLTGCLPYELGF--------LREARVFDASNNRLTGPLPCSLG--CLEKIERLNLSGNLLYGQVPEVLCALDNL 285 (382)
Q Consensus 216 L~l~~n~l~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 285 (382)
|++++|.+. .+|..+.. +++|+.|+|++|.++ .+|..+. .+++|+.|++++|.|++ +|..+..+++|
T Consensus 702 L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L 778 (876)
T 4ecn_A 702 IILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL 778 (876)
T ss_dssp EECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC
T ss_pred EECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC
Confidence 888888777 44443322 237888888888888 6777776 78888888888888885 67777788888
Q ss_pred CEEEccc------ccCcccCC-cccCCCCCCEEEccCCCCCCCCCccc-ccchhhhccCCC
Q 048561 286 VNLSLSN------NYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQRS-THECALFFLQPR 338 (382)
Q Consensus 286 ~~L~L~~------N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~~~-~~~~~~~~~np~ 338 (382)
+.|+|++ |++.+..| .+..+++|+.|+|++|.|..+|+.+. .+..+.+.+|+.
T Consensus 779 ~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTT
T ss_pred CEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCCC
Confidence 8888866 66666444 67778888888888888877776432 333344444544
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=1.2e-27 Score=251.37 Aligned_cols=253 Identities=17% Similarity=0.131 Sum_probs=180.2
Q ss_pred ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcc--cCCCCCCCEEEeecCCCCccCc-ccccCCCCC
Q 048561 66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPK--LAQLPYLYELDISNNKFSGTFP-VAILGKNDL 142 (382)
Q Consensus 66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L 142 (382)
..+|+.|+|++|.+.+ ..+..|+++++|++|++++|.+++.++.. ++++++|++|+|++|.+++..+ ..|.++++|
T Consensus 72 L~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 72 LPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL 150 (844)
T ss_dssp CTTCCEEECTTCCCCE-ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred CCCCCEEECCCCcCcc-cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence 4466677777777665 34556667777777777777766555444 6667777777777777765433 456677777
Q ss_pred cEEEecCCCCCCCCCcccc-c--CC------------------------------CCEEeCCCCcCCCcCCcCCC-----
Q 048561 143 SFLDIRFNFFTGSVPPQVF-M--QT------------------------------LDVLFLNNNNFMQKLPQNLG----- 184 (382)
Q Consensus 143 ~~L~Ls~n~l~~~~p~~~~-l--~~------------------------------L~~L~L~~n~l~~~~p~~~~----- 184 (382)
++|++++|.+++..+..+. + ++ |+.|++++|.+++..+..+.
T Consensus 151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 7777777766654444332 2 33 33444444433322221110
Q ss_pred ----------------------------------CCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchh
Q 048561 185 ----------------------------------STPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYE 230 (382)
Q Consensus 185 ----------------------------------~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~ 230 (382)
..++++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+..
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~ 309 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEA 309 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTT
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHH
Confidence 0235556666666665555556665 78999999999999988999
Q ss_pred cccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCE
Q 048561 231 LGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGV 310 (382)
Q Consensus 231 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~ 310 (382)
|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|+|++|.++++. .+++|+.
T Consensus 310 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~L~~ 385 (844)
T 3j0a_A 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPD 385 (844)
T ss_dssp TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS----SCCSCSE
T ss_pred hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc----CCCCcch
Confidence 999999999999999999888999999999999999999999777788999999999999999998654 3677888
Q ss_pred EEccCCCCCCCCCc
Q 048561 311 LDVNRNCIHYLPDQ 324 (382)
Q Consensus 311 L~L~~N~l~~lp~~ 324 (382)
|++++|+++.+|..
T Consensus 386 L~l~~N~l~~l~~~ 399 (844)
T 3j0a_A 386 IFLSGNKLVTLPKI 399 (844)
T ss_dssp EEEESCCCCCCCCC
T ss_pred hccCCCCccccccc
Confidence 88888888887754
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.2e-27 Score=234.02 Aligned_cols=226 Identities=17% Similarity=0.118 Sum_probs=138.4
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
+++.|+|++|++.+ +.+..|.++++|++|++++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|
T Consensus 76 ~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 76 NTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 45666666666655 34455666666666666666666555556666666666666666666444444556666666666
Q ss_pred cCCCCCCCCCc-ccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561 148 RFNFFTGSVPP-QVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG 225 (382)
Q Consensus 148 s~n~l~~~~p~-~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~ 225 (382)
++|.++ .++. .+. +++|++|++++|...+.++.. .+..+ .+|+.|++++|.+++
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~----------------------~~~~l-~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEG----------------------AFEGL-FNLKYLNLGMCNIKD 210 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTT----------------------TTTTC-TTCCEEECTTSCCSS
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChh----------------------hccCC-CCCCEEECCCCcccc
Confidence 666665 3333 222 566666666654333333321 12222 344444444444443
Q ss_pred CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccC
Q 048561 226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRK 304 (382)
Q Consensus 226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~ 304 (382)
. | .+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|+.|+|++|+|+++++ .+..
T Consensus 211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 2 2 35566777777777777776667777777777777777777776667777777777777777777777655 3566
Q ss_pred CCCCCEEEccCCCCCC
Q 048561 305 LIKNGVLDVNRNCIHY 320 (382)
Q Consensus 305 l~~L~~L~L~~N~l~~ 320 (382)
+++|+.|+|++|.+..
T Consensus 289 l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNC 304 (452)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEccCCCcCC
Confidence 7777777777777654
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=4.6e-28 Score=241.01 Aligned_cols=283 Identities=17% Similarity=0.104 Sum_probs=212.3
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
.+++.|++++|.+.+ ..+..|.++++|++|++++|.+++..|..|+++++|++|+|++|+++ .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCC-CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccc-cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 589999999999998 56678999999999999999999888999999999999999999999 67776 899999999
Q ss_pred ecCCCCCC-CCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCccc--ccccchhHHHhh------------
Q 048561 147 IRFNFFTG-SVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKF--TGSIPRSIGKLS------------ 210 (382)
Q Consensus 147 Ls~n~l~~-~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l--~~~lp~~l~~l~------------ 210 (382)
+++|.+++ .+|..+. +++|++|++++|.+++.....+....+++|++++|.+ .+..|..+..+.
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence 99999986 4667666 8999999999999976332222223349999999988 555555443310
Q ss_pred ----------------------------------------------------------------------hhHHHHHhhc
Q 048561 211 ----------------------------------------------------------------------STLIEVLFLN 220 (382)
Q Consensus 211 ----------------------------------------------------------------------~~L~~L~l~~ 220 (382)
.+|+.|++++
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 1466677778
Q ss_pred cccCCCCchhc-----------------------------------------------------ccCcCCCccccCCccC
Q 048561 221 NLLTGCLPYEL-----------------------------------------------------GFLREARVFDASNNRL 247 (382)
Q Consensus 221 n~l~~~~~~~~-----------------------------------------------------~~l~~L~~L~Ls~n~l 247 (382)
|.+.+.+|..+ ..+++|++|++++|.+
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l 336 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred ccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCcc
Confidence 87776666554 4567788888888888
Q ss_pred CCCCCcCCCCCCCCCEEeCcCCcCcc--cCchhhcCCCCCCEEEcccccCcc-cCC-cccCCCCCCEEEccCCCCCC-CC
Q 048561 248 TGPLPCSLGCLEKIERLNLSGNLLYG--QVPEVLCALDNLVNLSLSNNYFTG-VGP-LCRKLIKNGVLDVNRNCIHY-LP 322 (382)
Q Consensus 248 ~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~-~~~-~~~~l~~L~~L~L~~N~l~~-lp 322 (382)
++.+|..++.+++|++|++++|++++ .+|..+..+++|++|++++|.+++ ++. .+..+++|+.|++++|.+++ +|
T Consensus 337 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 416 (520)
T 2z7x_B 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416 (520)
T ss_dssp CTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred ChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh
Confidence 87777788888888888888888875 455677888888888888888887 443 36777888888888888864 33
Q ss_pred Ccc-cccchhhhccCCC--------CCCCCCCcCccCCCC
Q 048561 323 DQR-STHECALFFLQPR--------FCFYPSWYNFIPCSK 353 (382)
Q Consensus 323 ~~~-~~~~~~~~~~np~--------~c~~~~~~~~~~c~~ 353 (382)
..+ ..+..+.+.+|.. .+..+..+.+..|..
T Consensus 417 ~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l 456 (520)
T 2z7x_B 417 RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL 456 (520)
T ss_dssp GSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred hhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcC
Confidence 332 2333333333322 245566666666654
No 39
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=7.4e-30 Score=237.72 Aligned_cols=244 Identities=20% Similarity=0.134 Sum_probs=199.7
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCc-ccCCcccC-------CCCCCCEEEeecCCCCccCcccc--
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFS-GTISPKLA-------QLPYLYELDISNNKFSGTFPVAI-- 136 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~p~~l-- 136 (382)
..++.+++++|.+ . + +..+... |+.|++++|.++ +.+|..+. ++++|++|+|++|.+++.+|..+
T Consensus 43 ~~L~~l~l~~n~l-~-~-p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-A-D-LGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT-C-C-CHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc-c-c-HHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 3577888899988 3 3 3333333 888999999984 56676665 78999999999999998888876
Q ss_pred cCCCCCcEEEecCCCCCCCCCcccc-c-----CCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccc--cchhH-
Q 048561 137 LGKNDLSFLDIRFNFFTGSVPPQVF-M-----QTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGS--IPRSI- 206 (382)
Q Consensus 137 ~~l~~L~~L~Ls~n~l~~~~p~~~~-l-----~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~--lp~~l- 206 (382)
..+++|++|++++|.+++. |..+. + ++|++|++++|.+++..+..++. .+|++|++++|++.+. ++..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8899999999999999965 76554 4 89999999999999888888877 8899999999998755 33344
Q ss_pred -HHhhhhHHHHHhhccccCCC--Cc-hhcccCcCCCccccCCccCCCCCC-cCCCCCCCCCEEeCcCCcCcccCchhhcC
Q 048561 207 -GKLSSTLIEVLFLNNLLTGC--LP-YELGFLREARVFDASNNRLTGPLP-CSLGCLEKIERLNLSGNLLYGQVPEVLCA 281 (382)
Q Consensus 207 -~~l~~~L~~L~l~~n~l~~~--~~-~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 281 (382)
..+ ++|++|++++|.+++. .+ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.|+ .+|..+.
T Consensus 197 ~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 197 PLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp TTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred hccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 555 7899999999998832 22 344678999999999999997664 45667899999999999999 7887776
Q ss_pred CCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCC
Q 048561 282 LDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYL 321 (382)
Q Consensus 282 l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l 321 (382)
++|++|+|++|+|++.+ .+..+++|+.|++++|+|++.
T Consensus 274 -~~L~~L~Ls~N~l~~~p-~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRNP-SPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp -SEEEEEECCSSCCCSCC-CTTTSCEEEEEECTTCTTTCC
T ss_pred -CCceEEECCCCCCCCCh-hHhhCCCCCEEeccCCCCCCC
Confidence 89999999999999984 488999999999999999863
No 40
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=1.7e-27 Score=241.24 Aligned_cols=156 Identities=15% Similarity=0.063 Sum_probs=126.8
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
.+++.|++++|.+.+ +.+..|+++++|++|++++|.+++..|.+|+++++|++|+|++|.+++..|..|.++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 578999999999987 5666789999999999999999988888899999999999999999977788999999999999
Q ss_pred ecCCCCCCCCCcccc-cCCCCEEeCCCCcCCC-cCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHH----HHHhh
Q 048561 147 IRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQ-KLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLI----EVLFL 219 (382)
Q Consensus 147 Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~-~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~----~L~l~ 219 (382)
+++|.+++..+..+. +++|++|++++|.+++ .+|..++. .+|++|++++|.+++..+..+..+ .+++ +++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL-RENPQVNLSLDMS 189 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHH-HHCTTCCCEEECT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhh-hccccccceeecc
Confidence 999999854445554 8899999999999876 56887877 788999999999887666666655 3333 34555
Q ss_pred ccccC
Q 048561 220 NNLLT 224 (382)
Q Consensus 220 ~n~l~ 224 (382)
+|.+.
T Consensus 190 ~n~l~ 194 (606)
T 3vq2_A 190 LNPID 194 (606)
T ss_dssp TCCCC
T ss_pred CCCcc
Confidence 54443
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=7.1e-28 Score=241.05 Aligned_cols=131 Identities=22% Similarity=0.170 Sum_probs=82.4
Q ss_pred hhccCcccccccchhHHHhhhhHHHHHhhccccCCCCch---hcccCcCCCccccCCccCCCCCC--cCCCCCCCCCEEe
Q 048561 191 LTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPY---ELGFLREARVFDASNNRLTGPLP--CSLGCLEKIERLN 265 (382)
Q Consensus 191 L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~ 265 (382)
|++++|.+. .+|..++...++|+.|++++|.+.+..+. .+..+++|++|++++|.+++..+ ..+..+++|++|+
T Consensus 315 L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 315 ITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393 (549)
T ss_dssp EEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred EEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence 333344433 45555543226788888888888765532 25667777778887777764321 3466677777777
Q ss_pred CcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcc------------------cCCCCCCEEEccCCCCCCCCC
Q 048561 266 LSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC------------------RKLIKNGVLDVNRNCIHYLPD 323 (382)
Q Consensus 266 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~------------------~~l~~L~~L~L~~N~l~~lp~ 323 (382)
+++|+++ .+|..+..+++|++|++++|.+++++..+ ..+++|+.|+|++|+|+.+|+
T Consensus 394 Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~ 468 (549)
T 2z81_A 394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD 468 (549)
T ss_dssp CTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC
T ss_pred CCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC
Confidence 7777777 56666666677777777777766543321 245666666666666666664
No 42
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.8e-27 Score=230.71 Aligned_cols=225 Identities=18% Similarity=0.173 Sum_probs=136.0
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
.++.|+|++|++.+ +.+..|.++++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 65 ~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 65 NTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45556666666555 33445556666666666666665555555666666666666666665333344555666666666
Q ss_pred cCCCCCCCCCc-ccc-cCCCCEEeCCCCcCCCcCCc-CCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccC
Q 048561 148 RFNFFTGSVPP-QVF-MQTLDVLFLNNNNFMQKLPQ-NLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLT 224 (382)
Q Consensus 148 s~n~l~~~~p~-~~~-l~~L~~L~L~~n~l~~~~p~-~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~ 224 (382)
++|.++ .++. .+. +++|++|++++|...+.++. .+.. + ++|+.|++++|.++
T Consensus 144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-----------------------l-~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-----------------------L-SNLRYLNLAMCNLR 198 (440)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-----------------------C-SSCCEEECTTSCCS
T ss_pred CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc-----------------------c-cccCeecCCCCcCc
Confidence 666655 3332 222 55666666655433333322 2332 2 34444444444444
Q ss_pred CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-ccc
Q 048561 225 GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCR 303 (382)
Q Consensus 225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~ 303 (382)
. +| .+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|++|+|++|+|+++++ .+.
T Consensus 199 ~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 199 E-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp S-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred c-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 2 22 35667777777777777776667777777777777777777777667777777777777777777777655 356
Q ss_pred CCCCCCEEEccCCCCCC
Q 048561 304 KLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 304 ~l~~L~~L~L~~N~l~~ 320 (382)
.+++|+.|+|++|.+..
T Consensus 277 ~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWNC 293 (440)
T ss_dssp SCTTCCEEECCSSCEEC
T ss_pred cccCCCEEEcCCCCccC
Confidence 67777777777777643
No 43
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=239.81 Aligned_cols=129 Identities=22% Similarity=0.265 Sum_probs=92.8
Q ss_pred HHHHHhhccccCCCCc-hhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCc-ccCchhhcCCCCCCEEEc
Q 048561 213 LIEVLFLNNLLTGCLP-YELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLY-GQVPEVLCALDNLVNLSL 290 (382)
Q Consensus 213 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L 290 (382)
|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++
T Consensus 398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l 477 (570)
T 2z63_A 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477 (570)
T ss_dssp CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEEC
Confidence 3444444444443333 34556667777777777776666777777888888888888876 467778888888888888
Q ss_pred ccccCcccCC-cccCCCCCCEEEccCCCCCCCCCc----ccccchhhhccCCCCCC
Q 048561 291 SNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQ----RSTHECALFFLQPRFCF 341 (382)
Q Consensus 291 ~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~----~~~~~~~~~~~np~~c~ 341 (382)
++|++++..+ .+..+++|+.|++++|.++++|+. ...+..+.+.+|++.|.
T Consensus 478 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 8888888744 678888999999999999887653 23456667788888887
No 44
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.7e-27 Score=231.58 Aligned_cols=206 Identities=19% Similarity=0.119 Sum_probs=159.6
Q ss_pred ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561 66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145 (382)
Q Consensus 66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 145 (382)
..+|+.|+|++|.+.+ +.+..|.++++|++|++++|.+++..+..|..+++|++|+|++|.++...+..|..+++|++|
T Consensus 98 l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp CTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence 4678999999999998 566789999999999999999997777779999999999999999996666688999999999
Q ss_pred EecCCCCCCCCCcccc--cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhcccc
Q 048561 146 DIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL 223 (382)
Q Consensus 146 ~Ls~n~l~~~~p~~~~--l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l 223 (382)
++++|...+.++...+ +++|++|++++|.+++. |......+|++|++++|.+
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l------------------------- 230 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHF------------------------- 230 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCC-------------------------
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcC-------------------------
Confidence 9999655547766433 89999999999998753 4322224455555555544
Q ss_pred CCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCccc
Q 048561 224 TGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV 298 (382)
Q Consensus 224 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 298 (382)
.+..+..|.++++|+.|++++|.+++..+..|..+++|+.|++++|+|++..+..+..+++|+.|+|++|.+...
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 444555666777777778877777766677777777788888888877765556667777788888888776543
No 45
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=7.9e-27 Score=234.40 Aligned_cols=125 Identities=22% Similarity=0.282 Sum_probs=108.3
Q ss_pred eeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEec
Q 048561 69 LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR 148 (382)
Q Consensus 69 l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 148 (382)
.+.++++++++++ + +..+. ++|++|++++|.+++..+.+|+++++|++|+|++|.+++..|..|.++++|++|+++
T Consensus 33 ~~~l~ls~~~L~~-i-p~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 33 ESMVDYSNRNLTH-V-PKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CCEEECTTSCCCS-C-CTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEcCCCCCcc-C-CCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 4789999999997 3 43332 899999999999998777899999999999999999998888999999999999999
Q ss_pred CCCCCCCCCcccccCCCCEEeCCCCcCCC-cCCcCCCC-CcchhhhccCcccc
Q 048561 149 FNFFTGSVPPQVFMQTLDVLFLNNNNFMQ-KLPQNLGS-TPALYLTFANNKFT 199 (382)
Q Consensus 149 ~n~l~~~~p~~~~l~~L~~L~L~~n~l~~-~~p~~~~~-~~L~~L~l~~n~l~ 199 (382)
+|.++ .+|.. .+++|++|++++|.+++ ..|..++. .+|++|++++|.++
T Consensus 109 ~N~l~-~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 109 HNRLQ-NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp TSCCC-EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CCcCC-ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 99999 78877 88999999999999987 34566766 77888888887765
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=9.6e-28 Score=220.37 Aligned_cols=222 Identities=18% Similarity=0.128 Sum_probs=144.2
Q ss_pred eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecC
Q 048561 70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF 149 (382)
Q Consensus 70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 149 (382)
+.++.+++++.. ++. +-.++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~--ip~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA--VPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS--CCT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc--CCc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 456666666665 222 2246788888888888766666777888888888888888766677777888888888888
Q ss_pred CC-CCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC
Q 048561 150 NF-FTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC 226 (382)
Q Consensus 150 n~-l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~ 226 (382)
|. +....+..+. +++|++|++++|.+++..+..+.. .+|++|++++|.+++ .
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------~ 144 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-------------------------L 144 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------------------C
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-------------------------c
Confidence 86 5533344444 677888888888777665655554 555566665555542 2
Q ss_pred CchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCC
Q 048561 227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKL 305 (382)
Q Consensus 227 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l 305 (382)
.+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|.++..+++|+.|++++|+++++++ .+..+
T Consensus 145 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence 23344556666666666666664444456666666666666666665556666666666666666666666554 35666
Q ss_pred CCCCEEEccCCCCCC
Q 048561 306 IKNGVLDVNRNCIHY 320 (382)
Q Consensus 306 ~~L~~L~L~~N~l~~ 320 (382)
++|+.|++++|++..
T Consensus 225 ~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 225 RALQYLRLNDNPWVC 239 (285)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cccCEEeccCCCccC
Confidence 666666666666654
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=6.6e-27 Score=228.06 Aligned_cols=242 Identities=19% Similarity=0.178 Sum_probs=201.0
Q ss_pred eeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEec
Q 048561 69 LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR 148 (382)
Q Consensus 69 l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 148 (382)
...++.++.++.. +|..+ .++++.|++++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~~--iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLRE--VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCSS--CCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcCc--CCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4567888888876 33333 3689999999999998888899999999999999999997777889999999999999
Q ss_pred CCCCCCCCCc-ccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561 149 FNFFTGSVPP-QVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG 225 (382)
Q Consensus 149 ~n~l~~~~p~-~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~ 225 (382)
+|.++ .++. .+. +++|++|++++|.+....+..+.. .+|++|++++|... ..
T Consensus 121 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l------------------------~~ 175 (440)
T 3zyj_A 121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL------------------------SY 175 (440)
T ss_dssp SSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC------------------------CE
T ss_pred CCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCc------------------------ce
Confidence 99999 5555 344 899999999999988666655655 56666666654322 22
Q ss_pred CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccC
Q 048561 226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRK 304 (382)
Q Consensus 226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~ 304 (382)
..+..|.++++|++|++++|.++ .+| .+..+++|++|++++|.+++..|..+..+++|+.|+|++|+|+++.+ .+..
T Consensus 176 i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 253 (440)
T 3zyj_A 176 ISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253 (440)
T ss_dssp ECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred eCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence 23446888999999999999999 556 47889999999999999998889999999999999999999999766 6889
Q ss_pred CCCCCEEEccCCCCCCCCCc----ccccchhhhccCCCCCC
Q 048561 305 LIKNGVLDVNRNCIHYLPDQ----RSTHECALFFLQPRFCF 341 (382)
Q Consensus 305 l~~L~~L~L~~N~l~~lp~~----~~~~~~~~~~~np~~c~ 341 (382)
+++|+.|+|++|+|+.+|.. ...+..+.+.+||+.|+
T Consensus 254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 99999999999999999864 24566778889999987
No 48
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.7e-28 Score=225.46 Aligned_cols=239 Identities=18% Similarity=0.104 Sum_probs=187.4
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
.+...+++.+.+.. .+...+..+++|++|++++|.+++..|..++.+++|++|+|++|.+++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHH-HHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhh-hHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 45566676666654 344455667788888888888887666778888888888888888875443 778888888888
Q ss_pred cCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCC
Q 048561 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCL 227 (382)
Q Consensus 148 s~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~ 227 (382)
++|.++ .++ ..++|++|++++|.+++..+..+ .+|++|++++|.+++..+..+..+ ++|+.|++++|.+.+..
T Consensus 88 s~n~l~-~l~---~~~~L~~L~l~~n~l~~~~~~~~--~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 88 NNNYVQ-ELL---VGPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp CSSEEE-EEE---ECTTCCEEECCSSCCSEEEECCC--SSCEEEECCSSCCCSGGGBCTGGG-SSEEEEECTTSCCCEEE
T ss_pred cCCccc-ccc---CCCCcCEEECCCCccCCcCcccc--CCCCEEECCCCCCCCccchhhhcc-CCCCEEECCCCCCCccc
Confidence 888877 333 23788888888888876655443 568888888888886555566666 78888889988888766
Q ss_pred chhc-ccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCC
Q 048561 228 PYEL-GFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLI 306 (382)
Q Consensus 228 ~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~ 306 (382)
+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+++ +|..+..+++|+.|+|++|+|++++..+..++
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~ 237 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred HHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCC
Confidence 6666 4789999999999999854 33 3358999999999999995 45568889999999999999999888888999
Q ss_pred CCCEEEccCCCCC
Q 048561 307 KNGVLDVNRNCIH 319 (382)
Q Consensus 307 ~L~~L~L~~N~l~ 319 (382)
+|+.|++++|.++
T Consensus 238 ~L~~L~l~~N~~~ 250 (317)
T 3o53_A 238 NLEHFDLRGNGFH 250 (317)
T ss_dssp TCCEEECTTCCCB
T ss_pred CCCEEEccCCCcc
Confidence 9999999999998
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=1.2e-26 Score=235.33 Aligned_cols=276 Identities=20% Similarity=0.157 Sum_probs=213.4
Q ss_pred CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCc
Q 048561 64 LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLS 143 (382)
Q Consensus 64 ~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 143 (382)
....+++.|+|++|++++ +.+++|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|+++++|+
T Consensus 73 ~~l~~L~~L~Ls~N~i~~-i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~ 151 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 151 (635)
T ss_dssp TTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred hCCCCCCEEECCCCcCCC-cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccC
Confidence 335689999999999998 6677899999999999999999977667899999999999999999966666799999999
Q ss_pred EEEecCCCCCC-CCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC----------------------------C-------
Q 048561 144 FLDIRFNFFTG-SVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS----------------------------T------- 186 (382)
Q Consensus 144 ~L~Ls~n~l~~-~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~----------------------------~------- 186 (382)
+|++++|.+++ .+|..+. +++|++|++++|.+++..+..+.. .
T Consensus 152 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l 231 (635)
T 4g8a_A 152 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 231 (635)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred eeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhh
Confidence 99999999974 3455555 899999999999876543322110 0
Q ss_pred --------------------------------------------------------------------------------
Q 048561 187 -------------------------------------------------------------------------------- 186 (382)
Q Consensus 187 -------------------------------------------------------------------------------- 186 (382)
T Consensus 232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l 311 (635)
T 4g8a_A 232 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSF 311 (635)
T ss_dssp ESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEE
T ss_pred hcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccc
Confidence
Q ss_pred -----------------cchhhhccCc-------------------------------------------cccc--ccch
Q 048561 187 -----------------PALYLTFANN-------------------------------------------KFTG--SIPR 204 (382)
Q Consensus 187 -----------------~L~~L~l~~n-------------------------------------------~l~~--~lp~ 204 (382)
.++.|++.+| .+.. ..+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 391 (635)
T 4g8a_A 312 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 391 (635)
T ss_dssp EEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCH
T ss_pred cccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccccc
Confidence 0011111111 1100 0000
Q ss_pred h------------------------------------------------HHHhhhhHHHHHhhccccCCCCchhcccCcC
Q 048561 205 S------------------------------------------------IGKLSSTLIEVLFLNNLLTGCLPYELGFLRE 236 (382)
Q Consensus 205 ~------------------------------------------------l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~ 236 (382)
. +..+ .+++.++++.|.+.+..+..+..+++
T Consensus 392 ~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l-~~l~~l~ls~n~l~~~~~~~~~~~~~ 470 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSS 470 (635)
T ss_dssp HHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTC-TTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred chhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccc-cccccccccccccccccccccccchh
Confidence 0 0001 23344555666677677888899999
Q ss_pred CCccccCCccC-CCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEcc
Q 048561 237 ARVFDASNNRL-TGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVN 314 (382)
Q Consensus 237 L~~L~Ls~n~l-~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~ 314 (382)
|+.|++++|.+ .+..|..|..+++|++|++++|+|++..|.+|..+++|++|+|++|+|+++++ .+..+++|+.|+|+
T Consensus 471 L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 550 (635)
T 4g8a_A 471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 550 (635)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence 99999999975 44578889999999999999999999889999999999999999999999876 57899999999999
Q ss_pred CCCCCCCCCc-c----cccchhhhccCCCCCC
Q 048561 315 RNCIHYLPDQ-R----STHECALFFLQPRFCF 341 (382)
Q Consensus 315 ~N~l~~lp~~-~----~~~~~~~~~~np~~c~ 341 (382)
+|+|+++++. + ..+..+.+.+||+.|+
T Consensus 551 ~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 551 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999998653 2 2456677889999998
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.1e-26 Score=213.42 Aligned_cols=219 Identities=16% Similarity=0.112 Sum_probs=178.7
Q ss_pred CEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCC
Q 048561 95 SLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNN 173 (382)
Q Consensus 95 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n 173 (382)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+. +++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 67888888888 566544 47899999999999976667889999999999999999865566555 899999999999
Q ss_pred c-CCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCC
Q 048561 174 N-FMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPL 251 (382)
Q Consensus 174 ~-l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 251 (382)
. +....+..+.. .+|++|++++ |.+.+..+..+..+++|++|++++|.+++..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~-------------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 145 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDR-------------------------CGLQELGPGLFRGLAALQYLYLQDNALQALP 145 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTT-------------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccccCHHHhcCCcCCCEEECCC-------------------------CcCCEECHhHhhCCcCCCEEECCCCcccccC
Confidence 7 65544555544 4455555554 4444455667888999999999999999777
Q ss_pred CcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCCCCCc----cc
Q 048561 252 PCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQ----RS 326 (382)
Q Consensus 252 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~----~~ 326 (382)
+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ .+..+++|+.|++++|.++++|.. ..
T Consensus 146 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence 7778999999999999999997766779999999999999999999754 788999999999999999998853 34
Q ss_pred ccchhhhccCCCCCC
Q 048561 327 THECALFFLQPRFCF 341 (382)
Q Consensus 327 ~~~~~~~~~np~~c~ 341 (382)
.+..+.+.+|++.|.
T Consensus 226 ~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 226 ALQYLRLNDNPWVCD 240 (285)
T ss_dssp TCCEEECCSSCEECS
T ss_pred ccCEEeccCCCccCC
Confidence 566677889999886
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.4e-27 Score=225.98 Aligned_cols=265 Identities=16% Similarity=0.124 Sum_probs=215.4
Q ss_pred EEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCC
Q 048561 71 SIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN 150 (382)
Q Consensus 71 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 150 (382)
..+.++++++. +|..+ .++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 35 ~c~~~~~~l~~--iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (353)
T 2z80_A 35 ICKGSSGSLNS--IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110 (353)
T ss_dssp EEECCSTTCSS--CCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeeCCCCCccc--ccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence 37889999987 33333 358999999999999776668999999999999999999777888999999999999999
Q ss_pred CCCCCCCcc-cc-cCCCCEEeCCCCcCCCcCC-cCCCC-CcchhhhccCcc-cccccchhHHHhhhhHHHHHhhccccCC
Q 048561 151 FFTGSVPPQ-VF-MQTLDVLFLNNNNFMQKLP-QNLGS-TPALYLTFANNK-FTGSIPRSIGKLSSTLIEVLFLNNLLTG 225 (382)
Q Consensus 151 ~l~~~~p~~-~~-l~~L~~L~L~~n~l~~~~p-~~~~~-~~L~~L~l~~n~-l~~~lp~~l~~l~~~L~~L~l~~n~l~~ 225 (382)
.++ .++.. +. +++|++|++++|.+++..+ ..+.. .+|++|++++|. +....+..+..+ ++|+.|++++|.+.+
T Consensus 111 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-TFLEELEIDASDLQS 188 (353)
T ss_dssp CCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEEEETTCCE
T ss_pred cCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC-CCCCEEECCCCCcCc
Confidence 999 56654 44 8999999999999985444 35655 889999999994 664445667776 789999999999998
Q ss_pred CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhc---CCCCCCEEEcccccCcc-----
Q 048561 226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLC---ALDNLVNLSLSNNYFTG----- 297 (382)
Q Consensus 226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~----- 297 (382)
..+..+..+++|++|++++|.++......+..+++|++|++++|.+++..+..+. ....++.++++++.+++
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 8899999999999999999998743333344578999999999999865544332 35678899999988876
Q ss_pred cCCcccCCCCCCEEEccCCCCCCCCCcc----cccchhhhccCCCCCC
Q 048561 298 VGPLCRKLIKNGVLDVNRNCIHYLPDQR----STHECALFFLQPRFCF 341 (382)
Q Consensus 298 ~~~~~~~l~~L~~L~L~~N~l~~lp~~~----~~~~~~~~~~np~~c~ 341 (382)
++..+..+++|+.|++++|.|+.+|+.. ..+..+.+.+|++.|.
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 3345788999999999999999998753 3556677889999986
No 52
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=2.6e-26 Score=216.55 Aligned_cols=241 Identities=24% Similarity=0.322 Sum_probs=202.5
Q ss_pred cccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcE
Q 048561 65 TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144 (382)
Q Consensus 65 ~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 144 (382)
...+++.|++++|.+.+ + ..+.++++|++|++++|.+++ ++. +..+++|++|++++|.....++ .+..+++|++
T Consensus 86 ~l~~L~~L~L~~n~i~~--~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~ 159 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITD--I-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNY 159 (347)
T ss_dssp TCTTCCEEECCSSCCCC--C-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCE
T ss_pred cCCcCCEEEccCCcccC--c-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc-chhhCCCCcE
Confidence 35689999999999987 3 358999999999999999985 444 8999999999999997664444 4899999999
Q ss_pred EEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhcccc
Q 048561 145 LDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL 223 (382)
Q Consensus 145 L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l 223 (382)
|++++|.+. .++....+++|++|++++|.+.+..+ +.. .+++++++++|.+.+..+ +..+ ++|+.|++++|.+
T Consensus 160 L~l~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~-~~L~~L~l~~n~l 233 (347)
T 4fmz_A 160 LTVTESKVK-DVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANM-TRLNSLKIGNNKI 233 (347)
T ss_dssp EECCSSCCC-CCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCC
T ss_pred EEecCCCcC-CchhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcC-CcCCEEEccCCcc
Confidence 999999998 55554458999999999999875443 333 789999999999985433 5555 7899999999999
Q ss_pred CCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cc
Q 048561 224 TGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LC 302 (382)
Q Consensus 224 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~ 302 (382)
++..+ +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+ .+
T Consensus 234 ~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 234 TDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred CCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence 86544 8899999999999999985 3 468889999999999999985 4 457889999999999999998665 57
Q ss_pred cCCCCCCEEEccCCCCCCCCC
Q 048561 303 RKLIKNGVLDVNRNCIHYLPD 323 (382)
Q Consensus 303 ~~l~~L~~L~L~~N~l~~lp~ 323 (382)
..+++|+.|++++|.++++++
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGG
T ss_pred hccccCCEEEccCCccccccC
Confidence 889999999999999999865
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=1.8e-26 Score=231.76 Aligned_cols=251 Identities=17% Similarity=0.092 Sum_probs=157.6
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
.++.|++++|++.+ +.+..|.++++|++|++++|.+++..+..|+++++|++|+|++|.+++..+..|.++++|++|++
T Consensus 29 ~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred cccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57777777777776 34556777777777777777777666667777777777777777777555667777777777777
Q ss_pred cCCCCCCCCCc-ccc-cCCCCEEeCCCCcCCC-cCCcCCCC-CcchhhhccCcccccccchhHHHhhhhH----HHHHhh
Q 048561 148 RFNFFTGSVPP-QVF-MQTLDVLFLNNNNFMQ-KLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTL----IEVLFL 219 (382)
Q Consensus 148 s~n~l~~~~p~-~~~-l~~L~~L~L~~n~l~~-~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L----~~L~l~ 219 (382)
++|.++ .++. .+. +++|++|++++|.+++ .+|..++. .+|++|++++|.+++..+..+..+ .+| ..++++
T Consensus 108 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~~~~~L~l~ 185 (570)
T 2z63_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLSLDLS 185 (570)
T ss_dssp TTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHH-HTCTTCCCEEECT
T ss_pred cccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccch-hccchhhhhcccC
Confidence 777776 3433 233 6777777777777765 35666665 667777777777665545555544 333 334444
Q ss_pred ccccCCC-------------------------------------------------------------------------
Q 048561 220 NNLLTGC------------------------------------------------------------------------- 226 (382)
Q Consensus 220 ~n~l~~~------------------------------------------------------------------------- 226 (382)
+|.+.+.
T Consensus 186 ~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 4433221
Q ss_pred --------CchhcccCcCCCccccCCccCCCCCCcCC------------------------------------------C
Q 048561 227 --------LPYELGFLREARVFDASNNRLTGPLPCSL------------------------------------------G 256 (382)
Q Consensus 227 --------~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~------------------------------------------~ 256 (382)
.+..+..+++|+.|++++|.++ .+|..+ .
T Consensus 266 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344 (570)
T ss_dssp ETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCC
T ss_pred cchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccc
Confidence 2223334455555555555554 233332 2
Q ss_pred CCCCCCEEeCcCCcCcccC--chhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCC
Q 048561 257 CLEKIERLNLSGNLLYGQV--PEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLP 322 (382)
Q Consensus 257 ~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp 322 (382)
.+++|++|++++|.+++.. +..+..+++|++|++++|.+++.++.+..+++|+.|++++|.+++++
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~ 412 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 412 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCT
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCcccccc
Confidence 3456666666666665432 55566667777777777777666555667777777777777776653
No 54
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.1e-25 Score=203.25 Aligned_cols=217 Identities=22% Similarity=0.194 Sum_probs=164.1
Q ss_pred CCCCCcCceeeCCCCCCCcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecC
Q 048561 47 SDICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNN 126 (382)
Q Consensus 47 ~~~C~w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n 126 (382)
.+.|.|.|+.|.... ..+.+++++++++. ++..+. ++++.|++++|.+++..+..|..+++|++|++++|
T Consensus 2 ~~~C~~~~~~C~c~~------~~~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 71 (270)
T 2o6q_A 2 EALCKKDGGVCSCNN------NKNSVDCSSKKLTA--IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71 (270)
T ss_dssp CCCBGGGTCSBEEET------TTTEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS
T ss_pred CccCCCCCCCCEeCC------CCCEEEccCCCCCc--cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC
Confidence 468999999997543 46789999999986 333332 67999999999999766678999999999999999
Q ss_pred CCCccCcccccCCCCCcEEEecCCCCCCCCCcc-cc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccch
Q 048561 127 KFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQ-VF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPR 204 (382)
Q Consensus 127 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~ 204 (382)
.++...+..|..+++|++|++++|.++ .++.. +. +++|++|++++|.+++..
T Consensus 72 ~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------------- 125 (270)
T 2o6q_A 72 KLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLP------------------------- 125 (270)
T ss_dssp CCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCC-------------------------
T ss_pred ccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeC-------------------------
Confidence 998554555678999999999999998 45443 33 788888888888765322
Q ss_pred hHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCC
Q 048561 205 SIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDN 284 (382)
Q Consensus 205 ~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 284 (382)
+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 126 -----------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 126 -----------------------PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE 182 (270)
T ss_dssp -----------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred -----------------------HHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCC
Confidence 223456677788888888877655556777788888888888887665666777788
Q ss_pred CCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCCCC
Q 048561 285 LVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLP 322 (382)
Q Consensus 285 L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp 322 (382)
|++|+|++|+++++++ .+..+++|+.|++++|.+..-.
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 8888888888887665 3677788888888888876543
No 55
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.2e-25 Score=212.00 Aligned_cols=238 Identities=19% Similarity=0.274 Sum_probs=161.1
Q ss_pred ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561 66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145 (382)
Q Consensus 66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 145 (382)
..+++.|++++|.+.+ .+. +.++++|++|++++|.++. + +.+..+++|++|++++|.++ .++. +..+++|++|
T Consensus 65 ~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNIS-DISP-LANLTKMYSL 137 (347)
T ss_dssp CTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCC-CCGG-GTTCTTCCEE
T ss_pred cCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCccc-Cchh-hccCCceeEE
Confidence 4467777777777765 222 6777777777777777763 3 35777777777777777776 3333 6677777777
Q ss_pred EecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccC
Q 048561 146 DIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLT 224 (382)
Q Consensus 146 ~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~ 224 (382)
++++|.....++....+++|++|++++|.+.+..+ +.. .+|++|++++|.+. .++. +..+ ++|+.+++++|.+.
T Consensus 138 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l-~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 138 NLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP-LASL-TSLHYFTAYVNQIT 212 (347)
T ss_dssp ECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG-GGGC-TTCCEEECCSSCCC
T ss_pred ECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc-ccCC-CccceeecccCCCC
Confidence 77777555455443336777777777777654433 333 66777777777776 3333 4444 66777777777776
Q ss_pred CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccC
Q 048561 225 GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRK 304 (382)
Q Consensus 225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 304 (382)
+..+ +..+++|++|++++|.+++. +. +..+++|++|++++|.+++ + ..+..+++|++|++++|+++++ +.+..
T Consensus 213 ~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~ 285 (347)
T 4fmz_A 213 DITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI-SVLNN 285 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC-GGGGG
T ss_pred CCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC-hhhcC
Confidence 4433 67777888888888877743 33 6677788888888887774 3 3567777888888888877775 45677
Q ss_pred CCCCCEEEccCCCCCCCC
Q 048561 305 LIKNGVLDVNRNCIHYLP 322 (382)
Q Consensus 305 l~~L~~L~L~~N~l~~lp 322 (382)
+++|+.|++++|.+++.+
T Consensus 286 l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp CTTCSEEECCSSCCCGGG
T ss_pred CCCCCEEECcCCcCCCcC
Confidence 778888888888777654
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.1e-27 Score=233.12 Aligned_cols=216 Identities=19% Similarity=0.106 Sum_probs=162.1
Q ss_pred CCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCC
Q 048561 92 PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLN 171 (382)
Q Consensus 92 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~ 171 (382)
++|++|++++|.+++..|..|+.+++|++|+|++|.+++..| +..+++|++|+|++|.++ .++. .++|++|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~---~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV---GPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE---CTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC---CCCcCEEECc
Confidence 367777777777776656667777777777777777764443 666777777777777666 2222 2667777777
Q ss_pred CCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcc-cCcCCCccccCCccCCCC
Q 048561 172 NNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELG-FLREARVFDASNNRLTGP 250 (382)
Q Consensus 172 ~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~ 250 (382)
+|.+++..+..+ .+|++|++++|.+++..|..+..+ ++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++.
T Consensus 108 ~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 777765544432 456677777777776666666665 6778888888888777777765 789999999999999855
Q ss_pred CCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCC
Q 048561 251 LPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIH 319 (382)
Q Consensus 251 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~ 319 (382)
+. +..+++|+.|++++|.|++. |..+..+++|+.|+|++|.|+++++.+..+++|+.|++++|.+.
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 185 -KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred -cc-cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 32 34689999999999999965 44588899999999999999998888889999999999999998
No 57
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=2.8e-25 Score=218.07 Aligned_cols=235 Identities=25% Similarity=0.316 Sum_probs=120.1
Q ss_pred ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561 66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145 (382)
Q Consensus 66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 145 (382)
..+++.|++++|.+.+ . +. +.++++|++|++++|.+++..+ ++.+++|++|++++|.+++. +. +..+++|++|
T Consensus 67 l~~L~~L~Ls~n~l~~-~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L 139 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTD-I-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRL 139 (466)
T ss_dssp CTTCCEEECCSSCCCC-C-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEE
T ss_pred hcCCCEEECCCCccCC-c-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEE
Confidence 4567788888887776 2 22 6777777777777777764333 67777777777777777633 32 5666666666
Q ss_pred EecCCCCCCCCCc---------------------ccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccc
Q 048561 146 DIRFNFFTGSVPP---------------------QVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIP 203 (382)
Q Consensus 146 ~Ls~n~l~~~~p~---------------------~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp 203 (382)
++++|.+.+ ++. ...+++|++|++++|.+.+. +. +.. .+|++|++++|.+.+..+
T Consensus 140 ~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~ 216 (466)
T 1o6v_A 140 ELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SV-LAKLTNLESLIATNNQISDITP 216 (466)
T ss_dssp EEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCSEEECCSSCCCCCGG
T ss_pred ECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-hh-hccCCCCCEEEecCCccccccc
Confidence 666666552 221 11145566666666665432 21 222 455555555555553332
Q ss_pred hhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCC
Q 048561 204 RSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALD 283 (382)
Q Consensus 204 ~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 283 (382)
+..+ ++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+..+ +..++
T Consensus 217 --~~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~ 287 (466)
T 1o6v_A 217 --LGIL-TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 287 (466)
T ss_dssp --GGGC-TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred --cccc-CCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCC
Confidence 2322 4455555555554432 234444455555555554443222 3444444444444444442211 33444
Q ss_pred CCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCC
Q 048561 284 NLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 284 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~ 320 (382)
+|+.|++++|++++.++ +..+++|+.|++++|.+++
T Consensus 288 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 288 ALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp TCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSC
T ss_pred ccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCC
Confidence 44444444444443322 3334444444444444443
No 58
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=4.9e-25 Score=216.37 Aligned_cols=239 Identities=24% Similarity=0.325 Sum_probs=200.2
Q ss_pred cccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcc----------
Q 048561 65 TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPV---------- 134 (382)
Q Consensus 65 ~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~---------- 134 (382)
...+++.|++++|.+.+ . +. ++++++|++|++++|.+++. +. +..+++|++|++++|.+++ ++.
T Consensus 88 ~l~~L~~L~l~~n~l~~-~-~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L 161 (466)
T 1o6v_A 88 NLTKLVDILMNNNQIAD-I-TP-LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQL 161 (466)
T ss_dssp TCTTCCEEECCSSCCCC-C-GG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEE
T ss_pred ccccCCEEECCCCcccc-C-hh-hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEe
Confidence 35689999999999987 3 33 89999999999999999854 43 8999999999999998874 221
Q ss_pred ----------cccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccc
Q 048561 135 ----------AILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIP 203 (382)
Q Consensus 135 ----------~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp 203 (382)
.+..+++|++|++++|.++ .++....+++|++|++++|.+.+..+ ++. .+|++|++++|.+.+ ++
T Consensus 162 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~ 237 (466)
T 1o6v_A 162 SFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG 237 (466)
T ss_dssp EEEESCCCCGGGTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG
T ss_pred ecCCcccCchhhccCCCCCEEECcCCcCC-CChhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch
Confidence 2567788999999999988 55554458999999999999987655 333 789999999999884 43
Q ss_pred hhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCC
Q 048561 204 RSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALD 283 (382)
Q Consensus 204 ~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 283 (382)
.+..+ ++|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..++
T Consensus 238 -~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~ 309 (466)
T 1o6v_A 238 -TLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLK 309 (466)
T ss_dssp -GGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred -hhhcC-CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCC
Confidence 46666 789999999999986554 8899999999999999996443 7889999999999999996544 78899
Q ss_pred CCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCC
Q 048561 284 NLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLP 322 (382)
Q Consensus 284 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp 322 (382)
+|+.|++++|++++..+ +..+++|+.|++++|.+++++
T Consensus 310 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~ 347 (466)
T 1o6v_A 310 NLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS 347 (466)
T ss_dssp TCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred CCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch
Confidence 99999999999998766 788999999999999999985
No 59
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.2e-24 Score=211.02 Aligned_cols=228 Identities=19% Similarity=0.165 Sum_probs=172.0
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
.+++.|++++|.+.+ . + .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++ ++ +..+++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~~-~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD-M-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCCC-C-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred CCCCEEEccCCCccc-C-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEE
Confidence 368888888888887 2 3 478888888888888888853 3 7888888888888888885 33 77888888888
Q ss_pred ecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561 147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG 225 (382)
Q Consensus 147 Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~ 225 (382)
+++|.+++ ++ ...+++|++|++++|.+++. + ++. .+|++|++++|...+.+ .+..+ ++|+.|++++|.+++
T Consensus 113 L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l-~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 113 CDTNKLTK-LD-VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQ-TQLTTLDCSFNKITE 184 (457)
T ss_dssp CCSSCCSC-CC-CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTC-TTCCEEECCSSCCCC
T ss_pred CCCCcCCe-ec-CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccC-CcCCEEECCCCccce
Confidence 88888884 54 33378888888888888764 2 444 67888888888655455 24555 678888888888876
Q ss_pred CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCC
Q 048561 226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKL 305 (382)
Q Consensus 226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l 305 (382)
++ +..+++|+.|++++|.+++. .++.+++|++|++++|++++ +| +..+++|+.|++++|++++.+ ...+
T Consensus 185 -l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--~~~l 253 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--VSTL 253 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred -ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC--HHHC
Confidence 33 67788888888888888854 37778888888888888885 55 677788888888888888765 3466
Q ss_pred CCCCEEEccCCCCCCCC
Q 048561 306 IKNGVLDVNRNCIHYLP 322 (382)
Q Consensus 306 ~~L~~L~L~~N~l~~lp 322 (382)
++|+.|++++|.++.+.
T Consensus 254 ~~L~~L~l~~n~L~~L~ 270 (457)
T 3bz5_A 254 SKLTTLHCIQTDLLEID 270 (457)
T ss_dssp TTCCEEECTTCCCSCCC
T ss_pred CCCCEEeccCCCCCEEE
Confidence 77777777777776653
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.7e-27 Score=220.84 Aligned_cols=236 Identities=19% Similarity=0.188 Sum_probs=199.2
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
.+++.|++++|++.+ ..+..|.++++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ ..++|++|+
T Consensus 34 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred CCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEE
Confidence 379999999999998 566789999999999999999986554 8999999999999999983 33 348999999
Q ss_pred ecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561 147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG 225 (382)
Q Consensus 147 Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~ 225 (382)
+++|.+++..+. .+++|++|++++|.+++..+..+.. .+|++|++++|.+++..+..+....++|++|++++|.+++
T Consensus 106 l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 999999843322 2688999999999999887777776 8899999999999977777765333789999999999986
Q ss_pred CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCc-c-cCCccc
Q 048561 226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFT-G-VGPLCR 303 (382)
Q Consensus 226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~-~~~~~~ 303 (382)
. + ....+++|++|++++|.+++ ++..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.++ + .+..+.
T Consensus 184 ~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 184 V-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp E-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred c-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 5 2 33458999999999999995 5556889999999999999999 67888999999999999999998 3 334567
Q ss_pred CCCCCCEEEccCC
Q 048561 304 KLIKNGVLDVNRN 316 (382)
Q Consensus 304 ~l~~L~~L~L~~N 316 (382)
.+++|+.++++++
T Consensus 260 ~~~~L~~l~l~~~ 272 (317)
T 3o53_A 260 KNQRVQTVAKQTV 272 (317)
T ss_dssp TCHHHHHHHHHHH
T ss_pred ccccceEEECCCc
Confidence 8888888888843
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=4.4e-27 Score=218.98 Aligned_cols=225 Identities=21% Similarity=0.192 Sum_probs=185.9
Q ss_pred ceeEEEcCCCCCCCCCCccccC-------CCCCCCEEEcCCCcCcccCCccc--CCCCCCCEEEeecCCCCccCcccccC
Q 048561 68 ALASIDFNGFELAAPTLDGFID-------QLPDLSLFHANSNKFSGTISPKL--AQLPYLYELDISNNKFSGTFPVAILG 138 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~l~~ 138 (382)
.++.|++++|.+.....+..+. ++++|++|++++|.+++.+|..+ +.+++|++|+|++|++++. |..+..
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~ 142 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE 142 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence 3778899999885423444444 79999999999999999999887 8999999999999999966 877777
Q ss_pred C-----CCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCc--CCcCC--CC-CcchhhhccCccccc--ccchh
Q 048561 139 K-----NDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQK--LPQNL--GS-TPALYLTFANNKFTG--SIPRS 205 (382)
Q Consensus 139 l-----~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~--~p~~~--~~-~~L~~L~l~~n~l~~--~lp~~ 205 (382)
+ ++|++|++++|.+.+..+..+. +++|++|++++|.+.+. .+..+ .. .+|++|++++|.+++ .++..
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 6 9999999999999966656665 89999999999998765 23333 33 789999999999983 23333
Q ss_pred HHHhhhhHHHHHhhccccCCCCc-hhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCC
Q 048561 206 IGKLSSTLIEVLFLNNLLTGCLP-YELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDN 284 (382)
Q Consensus 206 l~~l~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 284 (382)
+....++|+.|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|+|++. |. +..+++
T Consensus 223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~ 297 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ 297 (312)
T ss_dssp HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence 33223789999999999998775 45677899999999999999 7888776 8999999999999955 66 889999
Q ss_pred CCEEEcccccCccc
Q 048561 285 LVNLSLSNNYFTGV 298 (382)
Q Consensus 285 L~~L~L~~N~l~~~ 298 (382)
|++|++++|+|++.
T Consensus 298 L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 298 VGNLSLKGNPFLDS 311 (312)
T ss_dssp EEEEECTTCTTTCC
T ss_pred CCEEeccCCCCCCC
Confidence 99999999999864
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=9.2e-25 Score=201.16 Aligned_cols=203 Identities=19% Similarity=0.121 Sum_probs=119.0
Q ss_pred cCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCE
Q 048561 88 IDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDV 167 (382)
Q Consensus 88 ~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~ 167 (382)
++++++++.+++++++++ .+|..+. +++++|+|++|.+++..+..|..+++|++|++++|.++ .++....+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTTCCE
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCCCCCCcCCE
Confidence 344555555555555555 3443332 45555555555555444445555555555555555555 3333333455555
Q ss_pred EeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCcc
Q 048561 168 LFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNR 246 (382)
Q Consensus 168 L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 246 (382)
|++++|.++ .+|..+.. .+|++|++++|++ ++..+..|..+++|++|++++|.
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l-------------------------~~l~~~~~~~l~~L~~L~L~~N~ 135 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL-------------------------TSLPLGALRGLGELQELYLKGNE 135 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCC-------------------------CCCCSSTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcC-------------------------cccCHHHHcCCCCCCEEECCCCC
Confidence 555555543 22322222 2233333333332 22334456667778888888888
Q ss_pred CCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCC
Q 048561 247 LTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 247 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~ 320 (382)
+++..+..|..+++|+.|++++|+|++..+..+..+++|+.|+|++|+|+.++..+....+|+.|+|++|.+..
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 77666666777778888888888887555555667778888888888887777767677778888888887765
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.6e-26 Score=226.58 Aligned_cols=234 Identities=18% Similarity=0.179 Sum_probs=198.5
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
.+|+.|+|++|.+.+ ..+..|+++++|++|++++|.+++..| ++.+++|++|+|++|.+++ ++ ..++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred CCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC----CCCCcCEEE
Confidence 379999999999998 567789999999999999999997665 9999999999999999984 33 238999999
Q ss_pred ecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561 147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG 225 (382)
Q Consensus 147 Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~ 225 (382)
+++|.+++..+. .+++|+.|++++|.+++..|..++. .+|++|++++|.+++..|..+....++|+.|++++|.+++
T Consensus 106 L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 999999954332 3689999999999999988888876 8899999999999988888887323899999999999986
Q ss_pred CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcc--cCCccc
Q 048561 226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG--VGPLCR 303 (382)
Q Consensus 226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~~ 303 (382)
.. .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.|+ .+|..+..+++|+.|++++|.+.+ .+..+.
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred cc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 63 34469999999999999996 4555889999999999999999 478889999999999999999983 333566
Q ss_pred CCCCCCEEEcc
Q 048561 304 KLIKNGVLDVN 314 (382)
Q Consensus 304 ~l~~L~~L~L~ 314 (382)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 67777666664
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.2e-25 Score=219.81 Aligned_cols=249 Identities=22% Similarity=0.218 Sum_probs=121.5
Q ss_pred CCcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCC-------------CEEEeecCCCC
Q 048561 63 NLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYL-------------YELDISNNKFS 129 (382)
Q Consensus 63 ~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L-------------~~L~Ls~n~l~ 129 (382)
.+....++.|++++|.+ + .+|..++++++|++|++++|.+.+.+|..++++++| ++|++++|.++
T Consensus 7 ~~~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~ 84 (454)
T 1jl5_A 7 NVSNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred ccccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc
Confidence 34455788888888888 4 356668888888888888888888888877776653 67777777666
Q ss_pred ccCcccccCCCCCcEEEecCCCCCCCCCccc------------------ccCCCCEEeCCCCcCCCcCCcCCCC-Ccchh
Q 048561 130 GTFPVAILGKNDLSFLDIRFNFFTGSVPPQV------------------FMQTLDVLFLNNNNFMQKLPQNLGS-TPALY 190 (382)
Q Consensus 130 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~------------------~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~ 190 (382)
+ +|.. .++|++|++++|.+++ +|... ..++|++|++++|.+++ +|. ++. .+|++
T Consensus 85 ~-lp~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp~-~~~l~~L~~ 157 (454)
T 1jl5_A 85 S-LPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LPE-LQNSSFLKI 157 (454)
T ss_dssp C-CCSC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CCC-CTTCTTCCE
T ss_pred c-CCCC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Ccc-cCCCCCCCE
Confidence 3 3331 2456666666666553 44321 01345555555555543 332 333 45555
Q ss_pred hhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCc
Q 048561 191 LTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNL 270 (382)
Q Consensus 191 L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~ 270 (382)
|++++|++++ +|..+ .+|++|++++|.+.+ +| .+..+++|++|++++|.+++ +|... ++|++|++++|.
T Consensus 158 L~l~~N~l~~-lp~~~----~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~ 226 (454)
T 1jl5_A 158 IDVDNNSLKK-LPDLP----PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNI 226 (454)
T ss_dssp EECCSSCCSC-CCCCC----TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSC
T ss_pred EECCCCcCcc-cCCCc----ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCc
Confidence 5555555552 33321 245555555555554 33 35555556666666665553 33221 355666666666
Q ss_pred CcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCCcccccchhhhccC
Q 048561 271 LYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQRSTHECALFFLQ 336 (382)
Q Consensus 271 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~~~~~~~~~~~~n 336 (382)
+. .+|. +..+++|++|++++|++++++.. +++|+.|++++|.++++|+....+..+.+.+|
T Consensus 227 l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N 287 (454)
T 1jl5_A 227 LE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSEN 287 (454)
T ss_dssp CS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred CC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcccCcCCEEECcCC
Confidence 65 4453 55666666666666666654432 24566666666666666554433333333333
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.7e-24 Score=210.38 Aligned_cols=236 Identities=20% Similarity=0.168 Sum_probs=155.1
Q ss_pred cccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcE
Q 048561 65 TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144 (382)
Q Consensus 65 ~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 144 (382)
...+++.|++++|.+.+. + ++++++|++|++++|.+++ ++ ++.+++|++|++++|++++ ++ +..+++|++
T Consensus 83 ~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~ 152 (457)
T 3bz5_A 83 QNTNLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTE 152 (457)
T ss_dssp TCTTCSEEECCSSCCSCC--C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCE
T ss_pred cCCCCCEEECcCCCCcee--e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCE
Confidence 356789999999998872 2 7888999999999998885 44 7888899999999998885 33 666777777
Q ss_pred EEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhcccc
Q 048561 145 LDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL 223 (382)
Q Consensus 145 L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l 223 (382)
|++++|...+.++ ...+++|++|++++|.+++. | +.. .+|++|++++|.+++. .+..+ ++|+.|++++|.+
T Consensus 153 L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l-~~L~~L~Ls~N~l 224 (457)
T 3bz5_A 153 LDCHLNKKITKLD-VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQN-IQLTFLDCSSNKL 224 (457)
T ss_dssp EECTTCSCCCCCC-CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTC-TTCSEEECCSSCC
T ss_pred EECCCCCcccccc-cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccC-CCCCEEECcCCcc
Confidence 7777775444442 22256666666666666552 2 222 4555555555555532 13333 4555555555555
Q ss_pred CCCCchhcccCcCCCccccCCccCCCCCCcC-----------------------------CCCCCCCCEEeCcCCcCccc
Q 048561 224 TGCLPYELGFLREARVFDASNNRLTGPLPCS-----------------------------LGCLEKIERLNLSGNLLYGQ 274 (382)
Q Consensus 224 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-----------------------------~~~l~~L~~L~L~~N~l~~~ 274 (382)
++ +| +..+++|++|++++|.+++..+.. ++.+++|+.|++++|.+.+.
T Consensus 225 ~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 225 TE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp SC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCE
T ss_pred cc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccce
Confidence 54 23 445555555555555555432222 23446666777777665544
Q ss_pred Cch--------hhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCC
Q 048561 275 VPE--------VLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPD 323 (382)
Q Consensus 275 ~p~--------~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 323 (382)
+|. .+..+++|++|++++|+++++ .+..+++|+.|++++|+|++++.
T Consensus 302 l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l--~l~~l~~L~~L~l~~N~l~~l~~ 356 (457)
T 3bz5_A 302 LDCQAAGITELDLSQNPKLVYLYLNNTELTEL--DVSHNTKLKSLSCVNAHIQDFSS 356 (457)
T ss_dssp EECTTCCCSCCCCTTCTTCCEEECTTCCCSCC--CCTTCTTCSEEECCSSCCCBCTT
T ss_pred eccCCCcceEechhhcccCCEEECCCCccccc--ccccCCcCcEEECCCCCCCCccc
Confidence 443 244567888899999999886 37888899999999999988764
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.4e-24 Score=198.32 Aligned_cols=204 Identities=19% Similarity=0.100 Sum_probs=106.4
Q ss_pred CCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCC
Q 048561 93 DLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLN 171 (382)
Q Consensus 93 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~ 171 (382)
+|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. +++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 455555555555544333455555555555555555433333444555555555555555433223222 4455555555
Q ss_pred CCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCC
Q 048561 172 NNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGP 250 (382)
Q Consensus 172 ~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 250 (382)
+|.+.+..+..+.. .+|++|++++|.+.+. .+|..+..+++|++|++++|.+++.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSF------------------------KLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCC------------------------CCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCccccCchhcccCCCCCEEECcCCcccee------------------------cCchhhccCCCCCEEECCCCCCCcC
Confidence 55544333323322 3333333333333310 1244455566666666666666654
Q ss_pred CCcCCCCCCCCC----EEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCc-ccCCCCCCEEEccCCCCCCC
Q 048561 251 LPCSLGCLEKIE----RLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPL-CRKLIKNGVLDVNRNCIHYL 321 (382)
Q Consensus 251 ~p~~~~~l~~L~----~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~L~~N~l~~l 321 (382)
.+..+..+.+|+ +|++++|.+.+..+..+ ...+|++|++++|+++++++. +..+++|+.|++++|+++.-
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 444554444444 67777777764433333 334677777777777766553 46677777777777777753
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=4.6e-25 Score=222.76 Aligned_cols=220 Identities=28% Similarity=0.313 Sum_probs=106.5
Q ss_pred eeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEec
Q 048561 69 LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR 148 (382)
Q Consensus 69 l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 148 (382)
++.|++++++++. ++..+. ++|++|++++|.++ .+|. .+++|++|+|++|+++ .+|. .+++|++|+++
T Consensus 42 l~~L~ls~n~L~~--lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 42 NAVLNVGESGLTT--LPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCEEECCSSCCSC--CCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CcEEEecCCCcCc--cChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 4555555555553 222222 45555555555555 3333 3455555555555555 3333 34555555555
Q ss_pred CCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCC------------------CCCcchhhhccCcccccccchhHHHhh
Q 048561 149 FNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNL------------------GSTPALYLTFANNKFTGSIPRSIGKLS 210 (382)
Q Consensus 149 ~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~------------------~~~~L~~L~l~~n~l~~~lp~~l~~l~ 210 (382)
+|.++ .+|. .+++|+.|++++|.+++ +|..+ ...+++.|++++|.++ .+|. ..
T Consensus 110 ~N~l~-~l~~--~l~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~-~l~~----~~ 180 (622)
T 3g06_A 110 SNPLT-HLPA--LPSGLCKLWIFGNQLTS-LPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPM----LP 180 (622)
T ss_dssp SCCCC-CCCC--CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-CCCC----CC
T ss_pred CCcCC-CCCC--CCCCcCEEECCCCCCCc-CCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCC-CCcc----cC
Confidence 55554 3333 23444444444444432 22211 0123444555555544 2331 12
Q ss_pred hhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEc
Q 048561 211 STLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSL 290 (382)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 290 (382)
++|+.|++++|.+++ +|. .+++|+.|++++|.++ .+|.. +++|+.|++++|.|++ +| ..+++|+.|+|
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~L 248 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMV 248 (622)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred CCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEEC
Confidence 455666666666653 221 1234444444444444 23321 2456666666666653 34 23455666666
Q ss_pred ccccCcccCCcccCCCCCCEEEccCCCCCCCCCc
Q 048561 291 SNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQ 324 (382)
Q Consensus 291 ~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 324 (382)
++|+|++++. .+++|+.|+|++|.|+.+|+.
T Consensus 249 s~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~ 279 (622)
T 3g06_A 249 SGNRLTSLPM---LPSGLLSLSVYRNQLTRLPES 279 (622)
T ss_dssp CSSCCSCCCC---CCTTCCEEECCSSCCCSCCGG
T ss_pred CCCCCCcCCc---ccccCcEEeCCCCCCCcCCHH
Confidence 6666665443 445566666666666666543
No 68
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=2.2e-24 Score=200.44 Aligned_cols=200 Identities=21% Similarity=0.106 Sum_probs=125.0
Q ss_pred CCCCEEEeecCCCCccCcccc--cCCCCCcEEEecCCCCCCCCCcc-----cccCCCCEEeCCCCcCCCcCCcCCCC-Cc
Q 048561 116 PYLYELDISNNKFSGTFPVAI--LGKNDLSFLDIRFNFFTGSVPPQ-----VFMQTLDVLFLNNNNFMQKLPQNLGS-TP 187 (382)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~-----~~l~~L~~L~L~~n~l~~~~p~~~~~-~~ 187 (382)
++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+.. ..+++|++|++++|.+++..+..+.. .+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 345555555555554444444 44555555555555555333211 11445555555555554444444443 44
Q ss_pred chhhhccCcccccc--cc--hhHHHhhhhHHHHHhhccccCCCC--ch-hcccCcCCCccccCCccCCCCCCcCCCCC--
Q 048561 188 ALYLTFANNKFTGS--IP--RSIGKLSSTLIEVLFLNNLLTGCL--PY-ELGFLREARVFDASNNRLTGPLPCSLGCL-- 258 (382)
Q Consensus 188 L~~L~l~~n~l~~~--lp--~~l~~l~~~L~~L~l~~n~l~~~~--~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l-- 258 (382)
|++|++++|++.+. ++ ..+..+ ++|++|++++|.++... +. .+..+++|++|++++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKF-PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSS-CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcC-CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 55555555544321 11 111222 44555555555554211 11 24678899999999999998778777766
Q ss_pred -CCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCC
Q 048561 259 -EKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 259 -~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~ 320 (382)
++|++|++++|+|+ .+|..+. ++|++|+|++|+|++++ .+..+++|+.|+|++|+|+.
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~-~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP-QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC-CTTSCCCCSCEECSSTTTSC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc-hhhhCCCccEEECcCCCCCC
Confidence 69999999999999 6777664 79999999999999873 46788999999999999875
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=5.9e-24 Score=194.14 Aligned_cols=210 Identities=17% Similarity=0.109 Sum_probs=167.9
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
.+++.|++++|++.+ ..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 469999999999997 4555799999999999999999977777899999999999999999977778899999999999
Q ss_pred ecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCc-CCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhcccc
Q 048561 147 IRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQK-LPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL 223 (382)
Q Consensus 147 Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~-~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l 223 (382)
+++|.+.+..+..+. +++|++|++++|.+++. +|..+.. .+|++|++++|++++..+..+..+
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-------------- 172 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-------------- 172 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH--------------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh--------------
Confidence 999999954443444 89999999999999873 5777766 678888888888774433333332
Q ss_pred CCCCchhcccCcCCC-ccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC
Q 048561 224 TGCLPYELGFLREAR-VFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP 300 (382)
Q Consensus 224 ~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 300 (382)
..++.|. .|++++|.+++..+..+ ...+|++|++++|.+++..+..+..+++|+.|++++|.+++..+
T Consensus 173 --------~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 173 --------HQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp --------HTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred --------hhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 1222233 78899999985545444 44589999999999996666667889999999999999987543
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=1.5e-23 Score=204.90 Aligned_cols=77 Identities=19% Similarity=0.344 Sum_probs=33.8
Q ss_pred CCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCC
Q 048561 93 DLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNN 172 (382)
Q Consensus 93 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~ 172 (382)
+|++|++++|.+++ +| +++.+++|++|++++|++++ +|..+ .+|++|++++|.+++ +|....+++|++|++++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADN 204 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCS
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECCC
Confidence 44455555554442 33 34445555555555554442 33221 244444444444442 33222244444444444
Q ss_pred CcCC
Q 048561 173 NNFM 176 (382)
Q Consensus 173 n~l~ 176 (382)
|.++
T Consensus 205 N~l~ 208 (454)
T 1jl5_A 205 NSLK 208 (454)
T ss_dssp SCCS
T ss_pred CcCC
Confidence 4443
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.1e-22 Score=185.33 Aligned_cols=198 Identities=21% Similarity=0.237 Sum_probs=161.3
Q ss_pred CCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCccc-c-cCCCCEEe
Q 048561 92 PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV-F-MQTLDVLF 169 (382)
Q Consensus 92 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~-l~~L~~L~ 169 (382)
...+.++++++.++ .+|..+. ++|++|+|++|.+++..+..|..+++|++|++++|.++ .++... . +++|++|+
T Consensus 16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 35778899988888 5676554 67899999999988665567888899999999999888 555543 3 77888888
Q ss_pred CCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCC
Q 048561 170 LNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTG 249 (382)
Q Consensus 170 L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 249 (382)
+++|.+++. .+..+..+++|++|++++|.+++
T Consensus 92 l~~n~l~~~------------------------------------------------~~~~~~~l~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 92 VTDNKLQAL------------------------------------------------PIGVFDQLVNLAELRLDRNQLKS 123 (270)
T ss_dssp CCSSCCCCC------------------------------------------------CTTTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCcCCcC------------------------------------------------CHhHcccccCCCEEECCCCccCe
Confidence 887765421 12235667889999999999998
Q ss_pred CCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCCCCCc----
Q 048561 250 PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPDQ---- 324 (382)
Q Consensus 250 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~---- 324 (382)
..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++++++ .+..+++|+.|++++|.|+++|+.
T Consensus 124 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 203 (270)
T 2o6q_A 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc
Confidence 878888999999999999999997666678999999999999999999876 478899999999999999999864
Q ss_pred ccccchhhhccCCCCCC
Q 048561 325 RSTHECALFFLQPRFCF 341 (382)
Q Consensus 325 ~~~~~~~~~~~np~~c~ 341 (382)
...+..+.+.+||+.|.
T Consensus 204 l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 204 LEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTCCEEECCSSCBCCS
T ss_pred ccCCCEEEecCCCeeCC
Confidence 23556677889999987
No 72
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.7e-22 Score=181.88 Aligned_cols=191 Identities=18% Similarity=0.171 Sum_probs=136.1
Q ss_pred CCCCcCceeeCCCCCCCcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCC
Q 048561 48 DICKYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK 127 (382)
Q Consensus 48 ~~C~w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 127 (382)
++|.|.|..|.. ..+.++++++.+.. ++..+. ++++.|++++|.+++..+..|..+++|++|+|++|.
T Consensus 3 ~Cp~~~gC~C~~--------~~~~l~~~~~~l~~--~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 70 (251)
T 3m19_A 3 TCETVTGCTCNE--------GKKEVDCQGKSLDS--VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ 70 (251)
T ss_dssp -CHHHHSSEEEG--------GGTEEECTTCCCSS--CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCCCCceEcCC--------CCeEEecCCCCccc--cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc
Confidence 456899999953 46788999999886 333333 688999999999988777788899999999999999
Q ss_pred CCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhH
Q 048561 128 FSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSI 206 (382)
Q Consensus 128 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l 206 (382)
+++..+..+..+++|++|++++|.+++..+..+. +++|++|++++|.+++..
T Consensus 71 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------------------- 123 (251)
T 3m19_A 71 LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP--------------------------- 123 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------------------
T ss_pred CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcC---------------------------
Confidence 9877777788889999999999988843333333 677777777777654221
Q ss_pred HHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCC
Q 048561 207 GKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLV 286 (382)
Q Consensus 207 ~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 286 (382)
+..+..+++|++|++++|.+++..+..|+.+++|++|++++|.+++..+..+..+++|+
T Consensus 124 ---------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 124 ---------------------SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp ---------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred ---------------------hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 12234556677777777777655555666667777777777777655555666666777
Q ss_pred EEEcccccCccc
Q 048561 287 NLSLSNNYFTGV 298 (382)
Q Consensus 287 ~L~L~~N~l~~~ 298 (382)
.|+|++|.+++.
T Consensus 183 ~L~l~~N~~~c~ 194 (251)
T 3m19_A 183 TITLFGNQFDCS 194 (251)
T ss_dssp EEECCSCCBCTT
T ss_pred EEEeeCCceeCC
Confidence 777777766654
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5.9e-22 Score=182.33 Aligned_cols=198 Identities=20% Similarity=0.158 Sum_probs=163.1
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
+++.+++++++++. + +..+ .++++.|++++|.+++..+..|..+++|++|+|++|.+++ ++.. ..+++|++|++
T Consensus 11 ~l~~l~~~~~~l~~-i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 11 SHLEVNCDKRNLTA-L-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TCCEEECTTSCCSS-C-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEEC
T ss_pred CccEEECCCCCCCc-C-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEEC
Confidence 68899999999987 3 3333 2689999999999998888899999999999999999984 4443 78999999999
Q ss_pred cCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561 148 RFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG 225 (382)
Q Consensus 148 s~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~ 225 (382)
++|.++ .+|..+. +++|++|++++|.+++..+..+.. .+|++|++++|+++ +
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-------------------------~ 138 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-------------------------T 138 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-------------------------C
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-------------------------c
Confidence 999998 7887665 899999999999998777666665 56666666666655 3
Q ss_pred CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCccc
Q 048561 226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV 298 (382)
Q Consensus 226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 298 (382)
..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.|+ .+|..+....+|+.|+|++|.+...
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 33445677889999999999999666666788999999999999998 7788888888999999999988753
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=2.1e-22 Score=203.33 Aligned_cols=221 Identities=26% Similarity=0.303 Sum_probs=160.1
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
.+++.|++++|+++. ++. .+++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 61 ~~L~~L~L~~N~l~~--lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLVIPDNNLTS--LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLW 127 (622)
T ss_dssp TTCSEEEECSCCCSC--CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCCCC--CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEE
Confidence 467888888888875 232 4678888888888877 4554 5677777777777776 3443 334555555
Q ss_pred ecCCCCCCCCCccc------------------ccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHH
Q 048561 147 IRFNFFTGSVPPQV------------------FMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGK 208 (382)
Q Consensus 147 Ls~n~l~~~~p~~~------------------~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~ 208 (382)
+++|.++ .+|... ...+|+.|++++|.+++ +|. ...+|++|++++|.++ .+|..+
T Consensus 128 L~~N~l~-~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~-l~~--~~~~L~~L~Ls~N~l~-~l~~~~-- 200 (622)
T 3g06_A 128 IFGNQLT-SLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LPM--LPSGLQELSVSDNQLA-SLPTLP-- 200 (622)
T ss_dssp CCSSCCS-CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCS-CCCCCC--
T ss_pred CCCCCCC-cCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCC-Ccc--cCCCCcEEECCCCCCC-CCCCcc--
Confidence 5555554 333321 12345555555555443 231 1267899999999998 455432
Q ss_pred hhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEE
Q 048561 209 LSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNL 288 (382)
Q Consensus 209 l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 288 (382)
.+|+.|++++|.++. +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.|+ .+|. .+++|+.|
T Consensus 201 --~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L 266 (622)
T 3g06_A 201 --SELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSL 266 (622)
T ss_dssp --TTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred --chhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEE
Confidence 578889999999884 443 35889999999999995 56 45689999999999999 5666 56899999
Q ss_pred EcccccCcccCCcccCCCCCCEEEccCCCCCCC
Q 048561 289 SLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYL 321 (382)
Q Consensus 289 ~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l 321 (382)
+|++|+|+.++..+..+++|+.|+|++|.|++.
T Consensus 267 ~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp ECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred eCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence 999999998877899999999999999999874
No 75
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1e-24 Score=207.16 Aligned_cols=249 Identities=17% Similarity=0.162 Sum_probs=185.0
Q ss_pred EEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCC----cccCCCC-CCCEEEeecCCCCccCcccccCC-----CC
Q 048561 72 IDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTIS----PKLAQLP-YLYELDISNNKFSGTFPVAILGK-----ND 141 (382)
Q Consensus 72 L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~ 141 (382)
.+++.+++++ .++..+....+|++|++++|.+++..+ ..+..++ +|++|+|++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSN-PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCC-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchH-HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 5677888887 455656666679999999998886655 6677888 89999999998886666666554 88
Q ss_pred CcEEEecCCCCCCCCCcccc-----c-CCCCEEeCCCCcCCCcCCcCCC----C--CcchhhhccCcccccccchhH---
Q 048561 142 LSFLDIRFNFFTGSVPPQVF-----M-QTLDVLFLNNNNFMQKLPQNLG----S--TPALYLTFANNKFTGSIPRSI--- 206 (382)
Q Consensus 142 L~~L~Ls~n~l~~~~p~~~~-----l-~~L~~L~L~~n~l~~~~p~~~~----~--~~L~~L~l~~n~l~~~lp~~l--- 206 (382)
|++|+|++|.+++..+..+. . ++|++|++++|.+++..+..+. . .+|++|++++|.+++.....+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999998865555333 2 6899999999988765554432 2 478889999998885444443
Q ss_pred -HHhhhhHHHHHhhccccCCCCchhcc----cC-cCCCccccCCccCCCC----CCcCCCC-CCCCCEEeCcCCcCcccC
Q 048561 207 -GKLSSTLIEVLFLNNLLTGCLPYELG----FL-REARVFDASNNRLTGP----LPCSLGC-LEKIERLNLSGNLLYGQV 275 (382)
Q Consensus 207 -~~l~~~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~Ls~n~l~~~----~p~~~~~-l~~L~~L~L~~N~l~~~~ 275 (382)
.....+|++|++++|.+++..+..+. .. ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33323788999999998877665444 44 6999999999999853 3344444 358999999999998654
Q ss_pred c----hhhcCCCCCCEEEcccccCcccC--------CcccCCCCCCEEEccCCCCCCC
Q 048561 276 P----EVLCALDNLVNLSLSNNYFTGVG--------PLCRKLIKNGVLDVNRNCIHYL 321 (382)
Q Consensus 276 p----~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~l~~L~~L~L~~N~l~~l 321 (382)
+ ..+..+++|++|+|++|.+.++. ..+..+++|+.||+++|.+...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4 34567789999999999954432 3467888899999999998764
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=5.5e-23 Score=190.92 Aligned_cols=194 Identities=23% Similarity=0.342 Sum_probs=117.2
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
.+++.|+++++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred CCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 356777777776665 22 356677777777777776643 33 6667777777777777663 33 466667777777
Q ss_pred ecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC
Q 048561 147 IRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC 226 (382)
Q Consensus 147 Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~ 226 (382)
+++|.++ .++....+++|++|++++|.+++ ++.
T Consensus 114 l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~------------------------~~~---------------------- 146 (308)
T 1h6u_A 114 LTSTQIT-DVTPLAGLSNLQVLYLDLNQITN------------------------ISP---------------------- 146 (308)
T ss_dssp CTTSCCC-CCGGGTTCTTCCEEECCSSCCCC------------------------CGG----------------------
T ss_pred CCCCCCC-CchhhcCCCCCCEEECCCCccCc------------------------Ccc----------------------
Confidence 7777766 34443336666666666665432 110
Q ss_pred CchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCC
Q 048561 227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLI 306 (382)
Q Consensus 227 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~ 306 (382)
+..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+++. +. +..+++|++|++++|++++.++ +..++
T Consensus 147 ----l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~ 217 (308)
T 1h6u_A 147 ----LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVSP-LANTS 217 (308)
T ss_dssp ----GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCGG-GTTCT
T ss_pred ----ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCcccc-ccCCC
Confidence 3445566666666666663 222 55666666666666666633 22 5556666666666666666543 56666
Q ss_pred CCCEEEccCCCCCCCCC
Q 048561 307 KNGVLDVNRNCIHYLPD 323 (382)
Q Consensus 307 ~L~~L~L~~N~l~~lp~ 323 (382)
+|+.|++++|.++..|.
T Consensus 218 ~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 218 NLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TCCEEEEEEEEEECCCE
T ss_pred CCCEEEccCCeeecCCe
Confidence 66666666666666554
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2.5e-23 Score=189.68 Aligned_cols=219 Identities=17% Similarity=0.137 Sum_probs=158.4
Q ss_pred eeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEec
Q 048561 69 LASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR 148 (382)
Q Consensus 69 l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 148 (382)
+..+++..+.+.+. ..+..+++|+.|++++|.++ .++ .+..+++|++|++++|.+++ + ..+..+++|++|+++
T Consensus 21 l~~l~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 21 TIKANLKKKSVTDA---VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHTCSCTTSE---ECHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECT
T ss_pred HHHHHhcCcccccc---cccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECC
Confidence 33445555555541 23557889999999999887 333 57889999999999999984 3 368889999999999
Q ss_pred CCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC
Q 048561 149 FNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC 226 (382)
Q Consensus 149 ~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~ 226 (382)
+|.+++..+..+. +++|++|++++|.+++..+..+.. .+|++|++++|.++ +.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~ 148 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-------------------------SL 148 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------CC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-------------------------cc
Confidence 9999854444444 788999999999887665554444 44555555555444 33
Q ss_pred CchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCC
Q 048561 227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLI 306 (382)
Q Consensus 227 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~ 306 (382)
.+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+. ++
T Consensus 149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~ 222 (272)
T 3rfs_A 149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CP 222 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC------TT
T ss_pred CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc------Cc
Confidence 344566777888888888888876666677888888888888888877776777888888888888877653 44
Q ss_pred CCCEEEccCCCCCC-CCCcc
Q 048561 307 KNGVLDVNRNCIHY-LPDQR 325 (382)
Q Consensus 307 ~L~~L~L~~N~l~~-lp~~~ 325 (382)
+|+.++++.|.+++ +|...
T Consensus 223 ~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 223 GIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp TTHHHHHHHHHTGGGBBCTT
T ss_pred HHHHHHHHHHhCCCcccCcc
Confidence 67777888888775 55543
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=4.2e-23 Score=188.22 Aligned_cols=203 Identities=17% Similarity=0.095 Sum_probs=164.0
Q ss_pred ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561 66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145 (382)
Q Consensus 66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 145 (382)
...++.|+++++.+.. ++ .++.+++|++|++++|.+++ + +.+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~--~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS--VQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCC--CT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCccc--cc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 3478999999999886 23 47899999999999999985 3 478999999999999999997777778999999999
Q ss_pred EecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhcccc
Q 048561 146 DIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLL 223 (382)
Q Consensus 146 ~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l 223 (382)
++++|.+++..+..+. +++|++|++++|.+++..+..+.. .+|++|++++|.++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------ 170 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ------------------------ 170 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC------------------------
Confidence 9999999955454444 899999999999998776665554 56666666666555
Q ss_pred CCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cc
Q 048561 224 TGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LC 302 (382)
Q Consensus 224 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~ 302 (382)
+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+. +++|+.|++..|.++|..| .+
T Consensus 171 -~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 171 -SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred -ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence 33444567788999999999999987777788999999999999988743 4578889999999998655 34
Q ss_pred cCC
Q 048561 303 RKL 305 (382)
Q Consensus 303 ~~l 305 (382)
+.+
T Consensus 243 ~~~ 245 (272)
T 3rfs_A 243 GSV 245 (272)
T ss_dssp SCB
T ss_pred ccc
Confidence 433
No 79
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=3.5e-25 Score=212.10 Aligned_cols=234 Identities=19% Similarity=0.214 Sum_probs=141.9
Q ss_pred cCCCCCCCEEEcCCCcCcccC----CcccCCCCCCCEEEeecC---CCCccCcccc-------cCCCCCcEEEecCCCCC
Q 048561 88 IDQLPDLSLFHANSNKFSGTI----SPKLAQLPYLYELDISNN---KFSGTFPVAI-------LGKNDLSFLDIRFNFFT 153 (382)
Q Consensus 88 ~~~l~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~Ls~n~l~ 153 (382)
+..+++|++|++++|.+.+.. +..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 344455555555555554332 222444555555555553 2223333332 34555555555555555
Q ss_pred C----CCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC--------------CcchhhhccCcccc-cccc---hhHHHhh
Q 048561 154 G----SVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS--------------TPALYLTFANNKFT-GSIP---RSIGKLS 210 (382)
Q Consensus 154 ~----~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~--------------~~L~~L~l~~n~l~-~~lp---~~l~~l~ 210 (382)
+ .++..+. +++|++|++++|.++...+..+.. .+|++|++++|.++ +.++ ..+..+
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~- 186 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH- 186 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC-
Confidence 3 1222222 455555555555543222222211 24555555555554 2223 233343
Q ss_pred hhHHHHHhhccccCC-----CCchhcccCcCCCccccCCccCC----CCCCcCCCCCCCCCEEeCcCCcCccc----Cch
Q 048561 211 STLIEVLFLNNLLTG-----CLPYELGFLREARVFDASNNRLT----GPLPCSLGCLEKIERLNLSGNLLYGQ----VPE 277 (382)
Q Consensus 211 ~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~----~p~ 277 (382)
++|+.|++++|.+.. ..+..+..+++|++|+|++|.++ ..++..+..+++|++|++++|.+++. ++.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 566667777776652 23336788999999999999985 45677788889999999999999865 456
Q ss_pred hhc--CCCCCCEEEcccccCcc-----cCCcc-cCCCCCCEEEccCCCCCCCC
Q 048561 278 VLC--ALDNLVNLSLSNNYFTG-----VGPLC-RKLIKNGVLDVNRNCIHYLP 322 (382)
Q Consensus 278 ~~~--~l~~L~~L~L~~N~l~~-----~~~~~-~~l~~L~~L~L~~N~l~~lp 322 (382)
.+. .+++|++|+|++|.|++ ++..+ .++++|+.|++++|.+++..
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 663 38999999999999998 44444 56899999999999999865
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=6.3e-22 Score=176.81 Aligned_cols=193 Identities=15% Similarity=0.112 Sum_probs=115.6
Q ss_pred CCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCC-CCccCcccccCCCCCcEEEecC-CCCCCCCCc-ccc-cCCCCEE
Q 048561 93 DLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK-FSGTFPVAILGKNDLSFLDIRF-NFFTGSVPP-QVF-MQTLDVL 168 (382)
Q Consensus 93 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~-~~~-l~~L~~L 168 (382)
+|++|++++|.+++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |.++ .++. .+. +++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 56666666666665444456666666666666665 5533334566666666666666 6666 3332 222 5666666
Q ss_pred eCCCCcCCCcCCcCCCC-Ccch---hhhccCc-ccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCC-cccc
Q 048561 169 FLNNNNFMQKLPQNLGS-TPAL---YLTFANN-KFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREAR-VFDA 242 (382)
Q Consensus 169 ~L~~n~l~~~~p~~~~~-~~L~---~L~l~~n-~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L 242 (382)
++++|.+++ +|. +.. .+++ +|++++| .++ +..+..|..+++|+ .|++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-------------------------~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-------------------------SIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-------------------------EECTTTTTTTBSSEEEEEC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchh-------------------------hcCcccccchhcceeEEEc
Confidence 666666543 332 222 2222 3333333 222 22333466677777 7888
Q ss_pred CCccCCCCCCcCCCCCCCCCEEeCcCCc-CcccCchhhcCC-CCCCEEEcccccCcccCCcccCCCCCCEEEccCC
Q 048561 243 SNNRLTGPLPCSLGCLEKIERLNLSGNL-LYGQVPEVLCAL-DNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRN 316 (382)
Q Consensus 243 s~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N 316 (382)
++|.++ .+|......++|++|++++|. +++..+..+..+ ++|+.|++++|+++++++. .+++|+.|+++++
T Consensus 164 ~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 888777 444333333678888888884 775556667777 7788888888888776554 5677777777665
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=5.4e-25 Score=206.48 Aligned_cols=256 Identities=14% Similarity=0.097 Sum_probs=185.4
Q ss_pred CcCceeeCCCCCCCcccceeEEEcCCCCCCCCCCccccCCC--CCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCC
Q 048561 51 KYKGFYCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQL--PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKF 128 (382)
Q Consensus 51 ~w~gv~c~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 128 (382)
+|+++.|+.. .++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+
T Consensus 38 ~W~~~~~~~~-------~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l 105 (336)
T 2ast_B 38 RWYRLASDES-------LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI 105 (336)
T ss_dssp HHHHHHTCST-------TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE
T ss_pred HHHHHhcCch-------hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc
Confidence 7888887532 3678888887765 3445566 7889999999988866554 56788899999999888
Q ss_pred Ccc-CcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCC-cCCCc-CCcCCCC-CcchhhhccCc-ccccc-
Q 048561 129 SGT-FPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNN-NFMQK-LPQNLGS-TPALYLTFANN-KFTGS- 201 (382)
Q Consensus 129 ~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n-~l~~~-~p~~~~~-~~L~~L~l~~n-~l~~~- 201 (382)
++. ++..+..+++|++|++++|.+++..+..+. +++|++|++++| .+++. ++..+.. .+|++|++++| .+++.
T Consensus 106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 755 777788888999999999988766666555 788999999888 56542 4443433 67888888888 77753
Q ss_pred cchhHHHhhh-hHHHHHhhcc--ccC-CCCchhcccCcCCCccccCCcc-CCCCCCcCCCCCCCCCEEeCcCCc-CcccC
Q 048561 202 IPRSIGKLSS-TLIEVLFLNN--LLT-GCLPYELGFLREARVFDASNNR-LTGPLPCSLGCLEKIERLNLSGNL-LYGQV 275 (382)
Q Consensus 202 lp~~l~~l~~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~ 275 (382)
++..+..+ + +|+.|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +....
T Consensus 186 ~~~~~~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 186 VQVAVAHV-SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp HHHHHHHS-CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred HHHHHHhc-ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence 45556665 5 7888888888 444 3456667788899999999998 666667778888899999999885 33222
Q ss_pred chhhcCCCCCCEEEcccccCcccCCcccCC-CCCCEEEccCCCCCCCC
Q 048561 276 PEVLCALDNLVNLSLSNNYFTGVGPLCRKL-IKNGVLDVNRNCIHYLP 322 (382)
Q Consensus 276 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l-~~L~~L~L~~N~l~~lp 322 (382)
...+..+++|+.|++++| ++.. .+..+ ..++.|++++|.+++..
T Consensus 265 ~~~l~~~~~L~~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 265 LLELGEIPTLKTLQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIA 309 (336)
T ss_dssp GGGGGGCTTCCEEECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTT
T ss_pred HHHHhcCCCCCEEeccCc-cCHH--HHHHHHhhCcceEEecccCcccc
Confidence 235777889999999988 4332 22222 23566678889888853
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=187.66 Aligned_cols=225 Identities=20% Similarity=0.144 Sum_probs=179.5
Q ss_pred ccceeEEEcCCCCCCCCCCccc--cCCCCCCCEEEcCCCcCcccCCccc--CCCCCCCEEEeecCCCCccCc----cccc
Q 048561 66 AIALASIDFNGFELAAPTLDGF--IDQLPDLSLFHANSNKFSGTISPKL--AQLPYLYELDISNNKFSGTFP----VAIL 137 (382)
Q Consensus 66 ~~~l~~L~L~~~~l~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p----~~l~ 137 (382)
...++.+.+....+........ +..+++|++|++++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 3457888888887754211111 2235679999999999999999888 899999999999999997554 3456
Q ss_pred CCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCc--CC-cC-CCC-CcchhhhccCcccccccchh---H-H
Q 048561 138 GKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQK--LP-QN-LGS-TPALYLTFANNKFTGSIPRS---I-G 207 (382)
Q Consensus 138 ~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~--~p-~~-~~~-~~L~~L~l~~n~l~~~lp~~---l-~ 207 (382)
.+++|++|++++|.+.+..+..+. +++|++|++++|.+.+. ++ .. +.. .+|++|++++|+++ .++.. + .
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 789999999999999866656655 89999999999998652 22 22 233 78999999999997 44432 3 4
Q ss_pred HhhhhHHHHHhhccccCCCCchhcccC---cCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCC
Q 048561 208 KLSSTLIEVLFLNNLLTGCLPYELGFL---REARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDN 284 (382)
Q Consensus 208 ~l~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 284 (382)
.+ ++|++|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|+|++. |. +..+++
T Consensus 222 ~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~ 295 (310)
T 4glp_A 222 AG-VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE 295 (310)
T ss_dssp HT-CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred cC-CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence 44 789999999999998878777766 69999999999999 6777764 7999999999999953 44 678899
Q ss_pred CCEEEcccccCcc
Q 048561 285 LVNLSLSNNYFTG 297 (382)
Q Consensus 285 L~~L~L~~N~l~~ 297 (382)
|+.|+|++|+|+.
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999999875
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.1e-21 Score=180.28 Aligned_cols=174 Identities=18% Similarity=0.299 Sum_probs=141.2
Q ss_pred cccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcE
Q 048561 65 TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSF 144 (382)
Q Consensus 65 ~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 144 (382)
...+++.|++++|.+.+ .+. +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++ ++. +..+++|++
T Consensus 61 ~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQV 133 (308)
T ss_dssp GCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCE
T ss_pred ccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCE
Confidence 35689999999999987 333 8999999999999999985 4 369999999999999999985 454 899999999
Q ss_pred EEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccC
Q 048561 145 LDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLT 224 (382)
Q Consensus 145 L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~ 224 (382)
|++++|.++ .++....+++|++|++++|.+++. +
T Consensus 134 L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l~~~------------------------~--------------------- 167 (308)
T 1h6u_A 134 LYLDLNQIT-NISPLAGLTNLQYLSIGNAQVSDL------------------------T--------------------- 167 (308)
T ss_dssp EECCSSCCC-CCGGGGGCTTCCEEECCSSCCCCC------------------------G---------------------
T ss_pred EECCCCccC-cCccccCCCCccEEEccCCcCCCC------------------------h---------------------
Confidence 999999998 555544488999999988876421 1
Q ss_pred CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC
Q 048561 225 GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP 300 (382)
Q Consensus 225 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 300 (382)
. +..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|.+++.+.
T Consensus 168 ----~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 168 ----P-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp ----G-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred ----h-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 1 3456788899999998885433 778889999999999998544 37888999999999999887543
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.9e-21 Score=175.05 Aligned_cols=178 Identities=21% Similarity=0.154 Sum_probs=145.7
Q ss_pred CCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-Ccchhhhc
Q 048561 116 PYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTF 193 (382)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l 193 (382)
...++++++++.++ .+|..+. +++++|+|++|.+++..+..+. +++|++|++++|.+++..+..+.. .+|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35678999999988 7777665 6899999999999865555554 789999999999888766655554 45555555
Q ss_pred cCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcc
Q 048561 194 ANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYG 273 (382)
Q Consensus 194 ~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 273 (382)
++|.+ ++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|+|++
T Consensus 91 ~~n~l-------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 91 ANNQL-------------------------ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp TTSCC-------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCcc-------------------------cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc
Confidence 55544 44445567788999999999999997777778899999999999999997
Q ss_pred cCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCCC
Q 048561 274 QVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYL 321 (382)
Q Consensus 274 ~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~l 321 (382)
..+..+..+++|++|+|++|+++++++ .+..+++|+.|+|++|.++.-
T Consensus 146 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 777789999999999999999999876 678999999999999999886
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=9.4e-24 Score=202.14 Aligned_cols=233 Identities=15% Similarity=0.152 Sum_probs=185.2
Q ss_pred cceeEEEcCCCCCCCCC---CccccCCCCCCCEEEcCCC---cCcccCCccc-------CCCCCCCEEEeecCCCCc---
Q 048561 67 IALASIDFNGFELAAPT---LDGFIDQLPDLSLFHANSN---KFSGTISPKL-------AQLPYLYELDISNNKFSG--- 130 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~---~~~~~~~l~~L~~L~l~~n---~l~~~~p~~l-------~~l~~L~~L~Ls~n~l~~--- 130 (382)
.+++.|++++|.+.+.. +...+..+++|++|++++| .+++.+|..+ ..+++|++|+|++|.+++
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 46899999999987621 2234778999999999996 4555666555 789999999999999996
Q ss_pred -cCcccccCCCCCcEEEecCCCCCCCCCcccc-----c---------CCCCEEeCCCCcCC-CcCC---cCCCC-Ccchh
Q 048561 131 -TFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-----M---------QTLDVLFLNNNNFM-QKLP---QNLGS-TPALY 190 (382)
Q Consensus 131 -~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-----l---------~~L~~L~L~~n~l~-~~~p---~~~~~-~~L~~ 190 (382)
.++..+..+++|++|+|++|.++...+..+. + ++|++|++++|.++ +.++ ..+.. .+|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 4777888999999999999999743333332 2 89999999999987 3344 23333 68999
Q ss_pred hhccCccccc-----ccchhHHHhhhhHHHHHhhccccC----CCCchhcccCcCCCccccCCccCCCC----CCcCC--
Q 048561 191 LTFANNKFTG-----SIPRSIGKLSSTLIEVLFLNNLLT----GCLPYELGFLREARVFDASNNRLTGP----LPCSL-- 255 (382)
Q Consensus 191 L~l~~n~l~~-----~lp~~l~~l~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~-- 255 (382)
|++++|.++. ..+..+..+ ++|+.|++++|.++ ..++..+..+++|++|+|++|.+++. ++..+
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 9999999873 223355565 78999999999986 56778889999999999999999854 45555
Q ss_pred CCCCCCCEEeCcCCcCcc----cCchhh-cCCCCCCEEEcccccCcccCC
Q 048561 256 GCLEKIERLNLSGNLLYG----QVPEVL-CALDNLVNLSLSNNYFTGVGP 300 (382)
Q Consensus 256 ~~l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~L~~N~l~~~~~ 300 (382)
+.+++|++|++++|.+++ .+|..+ ..+++|++|++++|.+++..+
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 448999999999999997 477777 568999999999999998663
No 86
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=3.1e-20 Score=162.21 Aligned_cols=179 Identities=16% Similarity=0.123 Sum_probs=140.8
Q ss_pred CCCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEee
Q 048561 49 ICKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDIS 124 (382)
Q Consensus 49 ~C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls 124 (382)
.|.|.++.|...+-. ....+++.|++++|++.+ +.+..|+++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 378999999753211 113478999999999987 566678899999999999999996666668899999999999
Q ss_pred cCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCccccccc
Q 048561 125 NNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSI 202 (382)
Q Consensus 125 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~l 202 (382)
+|.+++..+..+..+++|++|++++|.+++..+..+. +++|++|++++|.+++..+..+.. .+|++|++++|.+.+..
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence 9999966566678999999999999999844444344 889999999999998766666665 78889999998877543
Q ss_pred chhHHHhhhhHHHHHhhccccCCCCchhcccCcC
Q 048561 203 PRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLRE 236 (382)
Q Consensus 203 p~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~ 236 (382)
+.++.|+++.|.+++.+|..++.+..
T Consensus 165 --------~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 165 --------PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --------TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --------CCHHHHHHHHHhCCceeeccCccccC
Confidence 45778888888888888777665544
No 87
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=1.8e-24 Score=211.55 Aligned_cols=255 Identities=16% Similarity=0.091 Sum_probs=182.6
Q ss_pred cceeEEEcCCCCCCCC---CCccccCCCCCCCEEEcCCCcCcccCCcccC-CCC----CCCEEEeecCCCCc----cCcc
Q 048561 67 IALASIDFNGFELAAP---TLDGFIDQLPDLSLFHANSNKFSGTISPKLA-QLP----YLYELDISNNKFSG----TFPV 134 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~----~L~~L~Ls~n~l~~----~~p~ 134 (382)
.+++.|++++|.+.+. .++..+..+++|++|++++|.+.+..+..+. .++ +|++|+|++|.++. .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 3678888888887742 1345567778888999988888754333332 344 68899999888873 4577
Q ss_pred cccCCCCCcEEEecCCCCCCCCCcccc------cCCCCEEeCCCCcCCCcC----CcCCCC-CcchhhhccCcccccccc
Q 048561 135 AILGKNDLSFLDIRFNFFTGSVPPQVF------MQTLDVLFLNNNNFMQKL----PQNLGS-TPALYLTFANNKFTGSIP 203 (382)
Q Consensus 135 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~------l~~L~~L~L~~n~l~~~~----p~~~~~-~~L~~L~l~~n~l~~~lp 203 (382)
.+..+++|++|++++|.+++..+..+. .++|++|++++|.+++.. +..+.. .+|++|++++|.+....+
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 788888999999998888743333222 346999999998887643 233322 678889999998875544
Q ss_pred hhHHHhh----hhHHHHHhhccccCCC----CchhcccCcCCCccccCCccCCCCC-----CcCCCCCCCCCEEeCcCCc
Q 048561 204 RSIGKLS----STLIEVLFLNNLLTGC----LPYELGFLREARVFDASNNRLTGPL-----PCSLGCLEKIERLNLSGNL 270 (382)
Q Consensus 204 ~~l~~l~----~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~-----p~~~~~l~~L~~L~L~~N~ 270 (382)
..+.... .+|+.|++++|.+++. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 4444321 3788899999988764 4666778899999999999887432 2233357899999999999
Q ss_pred Cccc----CchhhcCCCCCCEEEcccccCcccCC-cc-----cCCCCCCEEEccCCCCCCC
Q 048561 271 LYGQ----VPEVLCALDNLVNLSLSNNYFTGVGP-LC-----RKLIKNGVLDVNRNCIHYL 321 (382)
Q Consensus 271 l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~-~~-----~~l~~L~~L~L~~N~l~~l 321 (382)
+++. ++..+..+++|++|++++|.+++... .+ ...++|+.|++++|.++..
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 9853 56777778999999999999875432 11 2346899999999998863
No 88
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=5.6e-24 Score=208.12 Aligned_cols=252 Identities=17% Similarity=0.098 Sum_probs=143.4
Q ss_pred ceeEEEcCCCCCCCC---CCccccCCCCCCCEEEcCCCcCcccCCccc-----CCCCCCCEEEeecCCCCcc----Cccc
Q 048561 68 ALASIDFNGFELAAP---TLDGFIDQLPDLSLFHANSNKFSGTISPKL-----AQLPYLYELDISNNKFSGT----FPVA 135 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l~~~----~p~~ 135 (382)
+++.|++++|.+... .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++. ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 488888888888741 235567888888888888888764433322 2245788888888887753 3445
Q ss_pred ccCCCCCcEEEecCCCCCCCCCcccc------cCCCCEEeCCCCcCCCc----CCcCCCC-CcchhhhccCcccccccch
Q 048561 136 ILGKNDLSFLDIRFNFFTGSVPPQVF------MQTLDVLFLNNNNFMQK----LPQNLGS-TPALYLTFANNKFTGSIPR 204 (382)
Q Consensus 136 l~~l~~L~~L~Ls~n~l~~~~p~~~~------l~~L~~L~L~~n~l~~~----~p~~~~~-~~L~~L~l~~n~l~~~lp~ 204 (382)
+..+++|++|++++|.++...+..+. .++|++|++++|.++.. ++..+.. .+|++|++++|.+.+....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 56677788888888777633222221 34677777777776543 2333332 5566677777766533222
Q ss_pred hHHH----hhhhHHHHHhhccccCCC----CchhcccCcCCCccccCCccCCCCCCcCCC-----CCCCCCEEeCcCCcC
Q 048561 205 SIGK----LSSTLIEVLFLNNLLTGC----LPYELGFLREARVFDASNNRLTGPLPCSLG-----CLEKIERLNLSGNLL 271 (382)
Q Consensus 205 ~l~~----l~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-----~l~~L~~L~L~~N~l 271 (382)
.+.. -.++|+.|++++|.++.. ++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 2211 124566666666666543 344455566666666666665432111111 124566666666665
Q ss_pred ccc----CchhhcCCCCCCEEEcccccCcccCC-cc----c-CCCCCCEEEccCCCCC
Q 048561 272 YGQ----VPEVLCALDNLVNLSLSNNYFTGVGP-LC----R-KLIKNGVLDVNRNCIH 319 (382)
Q Consensus 272 ~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~-~~----~-~l~~L~~L~L~~N~l~ 319 (382)
++. ++.++..+++|++|++++|.+++... .+ . ..++|+.|++++|.++
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 543 33444455566666666665554321 11 1 1445666666666555
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.4e-20 Score=168.07 Aligned_cols=180 Identities=16% Similarity=0.184 Sum_probs=145.7
Q ss_pred CCCCEEEeecCCCCccCcccccCCCCCcEEEecCCC-CCCCCCc-ccc-cCCCCEEeCCC-CcCCCcCCcCCCC-Ccchh
Q 048561 116 PYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNF-FTGSVPP-QVF-MQTLDVLFLNN-NNFMQKLPQNLGS-TPALY 190 (382)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~-~~~-l~~L~~L~L~~-n~l~~~~p~~~~~-~~L~~ 190 (382)
++|++|++++|++++..+..|..+++|++|++++|. ++ .++. .+. +++|++|++++ |.+++..+..+.. .+|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 489999999999996666689999999999999997 87 5554 443 89999999998 9888666666655 56777
Q ss_pred hhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCC---ccccCCc-cCCCCCCcCCCCCCCCC-EEe
Q 048561 191 LTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREAR---VFDASNN-RLTGPLPCSLGCLEKIE-RLN 265 (382)
Q Consensus 191 L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~p~~~~~l~~L~-~L~ 265 (382)
|++++|.+++ + |. +..+++|+ +|++++| .+++..+..|..+++|+ +|+
T Consensus 110 L~l~~n~l~~-l-------------------------p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~ 162 (239)
T 2xwt_C 110 LGIFNTGLKM-F-------------------------PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLK 162 (239)
T ss_dssp EEEEEECCCS-C-------------------------CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEE
T ss_pred EeCCCCCCcc-c-------------------------cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEE
Confidence 7777666652 2 22 45566666 9999999 99976677799999999 999
Q ss_pred CcCCcCcccCchhhcCCCCCCEEEccccc-CcccCC-cccCC-CCCCEEEccCCCCCCCCCc
Q 048561 266 LSGNLLYGQVPEVLCALDNLVNLSLSNNY-FTGVGP-LCRKL-IKNGVLDVNRNCIHYLPDQ 324 (382)
Q Consensus 266 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~l-~~L~~L~L~~N~l~~lp~~ 324 (382)
+++|.++ .+|......++|+.|++++|+ ++++++ .+..+ ++|+.|++++|+|+.+|+.
T Consensus 163 l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 163 LYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp CCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred cCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 9999999 555544444899999999995 998765 57888 9999999999999999864
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=4.6e-21 Score=181.13 Aligned_cols=235 Identities=20% Similarity=0.171 Sum_probs=162.7
Q ss_pred CCcCceeeCCCC--CCC--cccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCC-cccCCCCCCCE-EEe
Q 048561 50 CKYKGFYCGHPP--DNL--TAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTIS-PKLAQLPYLYE-LDI 123 (382)
Q Consensus 50 C~w~gv~c~~~~--~~~--~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~-L~L 123 (382)
|.|..|.|.... ... -..+++.|+|++|+|+. +.+++|+++++|++|+|++|.+.+.+| .+|.++++|++ +.+
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 788889996522 110 12468899999999987 566678999999999999999866555 46788888775 566
Q ss_pred ecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc--cCCCCEEeCCC-CcCCCcCCcCCCC--CcchhhhccCccc
Q 048561 124 SNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNN-NNFMQKLPQNLGS--TPALYLTFANNKF 198 (382)
Q Consensus 124 s~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~--l~~L~~L~L~~-n~l~~~~p~~~~~--~~L~~L~l~~n~l 198 (382)
++|+++...|..|..+++|++|++++|++. .++...+ ..++..|++.+ +.+....+..+.. ..+++|++++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 778998666778889999999999999998 5555443 55677788765 4555444445554 3567788888888
Q ss_pred ccccchhHHHhhhhHHHHHhhc-cccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCC-cCcccCc
Q 048561 199 TGSIPRSIGKLSSTLIEVLFLN-NLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGN-LLYGQVP 276 (382)
Q Consensus 199 ~~~lp~~l~~l~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p 276 (382)
+ .++...+.. .+++.+++.+ |.+....+..|..+++|++|++++|+|+. +|.. .+.+|+.|.+.++ .++ .+|
T Consensus 167 ~-~i~~~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~--~~~~L~~L~~l~~~~l~-~lP 240 (350)
T 4ay9_X 167 Q-EIHNSAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSY--GLENLKKLRARSTYNLK-KLP 240 (350)
T ss_dssp C-EECTTSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSS--SCTTCCEEECTTCTTCC-CCC
T ss_pred c-CCChhhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChh--hhccchHhhhccCCCcC-cCC
Confidence 8 566655554 4677777765 44554444567788888888888888874 4432 2345555555443 343 555
Q ss_pred hhhcCCCCCCEEEcccc
Q 048561 277 EVLCALDNLVNLSLSNN 293 (382)
Q Consensus 277 ~~~~~l~~L~~L~L~~N 293 (382)
.+..+++|+.+++.++
T Consensus 241 -~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 241 -TLEKLVALMEASLTYP 256 (350)
T ss_dssp -CTTTCCSCCEEECSCH
T ss_pred -CchhCcChhhCcCCCC
Confidence 3667778888888765
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=7.8e-23 Score=194.16 Aligned_cols=227 Identities=15% Similarity=0.137 Sum_probs=181.2
Q ss_pred EEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCc----ccccCCC-CCcEEEecCCCCCCCCCcccc-c-----CC
Q 048561 96 LFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFP----VAILGKN-DLSFLDIRFNFFTGSVPPQVF-M-----QT 164 (382)
Q Consensus 96 ~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~-l-----~~ 164 (382)
+++++.|.+++.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|+|++|.+++..+..+. + ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46889999999998888877889999999999996655 6778888 899999999999966565554 3 89
Q ss_pred CCEEeCCCCcCCCcCCcCCCC------CcchhhhccCcccccccchhHHHh----hhhHHHHHhhccccCCCCch----h
Q 048561 165 LDVLFLNNNNFMQKLPQNLGS------TPALYLTFANNKFTGSIPRSIGKL----SSTLIEVLFLNNLLTGCLPY----E 230 (382)
Q Consensus 165 L~~L~L~~n~l~~~~p~~~~~------~~L~~L~l~~n~l~~~lp~~l~~l----~~~L~~L~l~~n~l~~~~~~----~ 230 (382)
|++|++++|.+++..+..+.. .+|++|++++|.+++..+..+... ..+|++|++++|.+.+.... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998766653332 579999999999997666666554 35899999999999865443 3
Q ss_pred cccCc-CCCccccCCccCCCCCCcCC----CCC-CCCCEEeCcCCcCccc----CchhhcC-CCCCCEEEcccccCcccC
Q 048561 231 LGFLR-EARVFDASNNRLTGPLPCSL----GCL-EKIERLNLSGNLLYGQ----VPEVLCA-LDNLVNLSLSNNYFTGVG 299 (382)
Q Consensus 231 ~~~l~-~L~~L~Ls~n~l~~~~p~~~----~~l-~~L~~L~L~~N~l~~~----~p~~~~~-l~~L~~L~L~~N~l~~~~ 299 (382)
+..+. +|++|++++|.+++..+..+ ..+ ++|++|++++|.|++. ++..+.. .++|++|+|++|.|++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 99999999999986665433 344 5999999999999853 4555555 459999999999998764
Q ss_pred C-----cccCCCCCCEEEccCCCCCCCC
Q 048561 300 P-----LCRKLIKNGVLDVNRNCIHYLP 322 (382)
Q Consensus 300 ~-----~~~~l~~L~~L~L~~N~l~~lp 322 (382)
. .+..+++|+.|++++|.+..+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~ 269 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMS 269 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccC
Confidence 3 3577899999999999966654
No 92
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.5e-20 Score=187.69 Aligned_cols=190 Identities=22% Similarity=0.318 Sum_probs=136.4
Q ss_pred CcCce-eeCCCCCCCcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCC
Q 048561 51 KYKGF-YCGHPPDNLTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFS 129 (382)
Q Consensus 51 ~w~gv-~c~~~~~~~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 129 (382)
.|.++ .|... +++.|++++|++.+ + +..+ +++|++|++++|.++ .+| ..+++|++|+|++|.|+
T Consensus 49 ~~~~l~~C~~~-------~L~~L~Ls~n~L~~-l-p~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~ 113 (571)
T 3cvr_A 49 AVSLLKECLIN-------QFSELQLNRLNLSS-L-PDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS 113 (571)
T ss_dssp HHHHHHHHHHT-------TCSEEECCSSCCSC-C-CSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS
T ss_pred hhhhccccccC-------CccEEEeCCCCCCc-c-CHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC
Confidence 68888 67532 68999999999987 3 3333 378999999999999 677 45789999999999999
Q ss_pred ccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHh
Q 048561 130 GTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKL 209 (382)
Q Consensus 130 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l 209 (382)
+ +|. +.. +|++|+|++|.+++ +|. .+++|++|++++|.+++ +|. ...+|++|++++|.+++ +
T Consensus 114 ~-ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-l------- 175 (571)
T 3cvr_A 114 T-LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-L------- 175 (571)
T ss_dssp C-CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-C-------
T ss_pred C-cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-c-------
Confidence 5 777 655 89999999999995 777 67899999999998875 443 22445555555555442 2
Q ss_pred hhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCC-------CEEeCcCCcCcccCchhhcCC
Q 048561 210 SSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKI-------ERLNLSGNLLYGQVPEVLCAL 282 (382)
Q Consensus 210 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~p~~~~~l 282 (382)
|. +. ++|+.|++++|.|+ .+|. +.. +| +.|++++|.|+ .+|..+..+
T Consensus 176 ------------------p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l 229 (571)
T 3cvr_A 176 ------------------PE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSL 229 (571)
T ss_dssp ------------------CC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGS
T ss_pred ------------------ch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcC
Confidence 22 22 56777777777777 4555 443 55 77777777777 566666667
Q ss_pred CCCCEEEcccccCcccC
Q 048561 283 DNLVNLSLSNNYFTGVG 299 (382)
Q Consensus 283 ~~L~~L~L~~N~l~~~~ 299 (382)
++|+.|+|++|.|++..
T Consensus 230 ~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CTTEEEECCSSSCCHHH
T ss_pred CCCCEEEeeCCcCCCcC
Confidence 77777777777776643
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=2.1e-22 Score=188.76 Aligned_cols=229 Identities=14% Similarity=0.130 Sum_probs=182.4
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCccc-CCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGT-ISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 145 (382)
..++.+++++|.+.+. .+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~-~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQP-LAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSC-CCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCcccccc-chh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 5789999999999883 333 66899999999999999865 78889999999999999999998888889999999999
Q ss_pred EecCC-CCCCC-CCcccc-cCCCCEEeCCCC-cCCCc-CCcCCCC-C-cchhhhccCc--ccc-cccchhHHHhhhhHHH
Q 048561 146 DIRFN-FFTGS-VPPQVF-MQTLDVLFLNNN-NFMQK-LPQNLGS-T-PALYLTFANN--KFT-GSIPRSIGKLSSTLIE 215 (382)
Q Consensus 146 ~Ls~n-~l~~~-~p~~~~-l~~L~~L~L~~n-~l~~~-~p~~~~~-~-~L~~L~l~~n--~l~-~~lp~~l~~l~~~L~~ 215 (382)
++++| .+++. ++..+. +++|++|++++| .+++. ++..+.. . +|++|++++| .++ +.++..+..+ ++|+.
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~-~~L~~ 226 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC-PNLVH 226 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC-TTCSE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC-CCCCE
Confidence 99999 67742 455444 899999999999 88753 4444444 5 8999999999 454 4566666776 88999
Q ss_pred HHhhccc-cCCCCchhcccCcCCCccccCCcc-CCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccc
Q 048561 216 VLFLNNL-LTGCLPYELGFLREARVFDASNNR-LTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNN 293 (382)
Q Consensus 216 L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 293 (382)
|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++| +....-..+. .+++.|++++|
T Consensus 227 L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n 303 (336)
T 2ast_B 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCS 303 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCC
T ss_pred EeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecc
Confidence 9999999 777777889999999999999995 33222235778999999999999 5432222222 34777779999
Q ss_pred cCcccCCc
Q 048561 294 YFTGVGPL 301 (382)
Q Consensus 294 ~l~~~~~~ 301 (382)
++++..+.
T Consensus 304 ~l~~~~~~ 311 (336)
T 2ast_B 304 HFTTIARP 311 (336)
T ss_dssp CSCCTTCS
T ss_pred cCccccCC
Confidence 99997653
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=3.1e-20 Score=185.40 Aligned_cols=178 Identities=26% Similarity=0.323 Sum_probs=138.9
Q ss_pred CCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCC
Q 048561 93 DLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNN 172 (382)
Q Consensus 93 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~ 172 (382)
+|+.|++++|.+++ +|..+. ++|++|+|++|.|+ .+| ..+++|++|++++|.+++ +|. + ..+|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l-~~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-L-PASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-C-CTTCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-h-hcCCCEEECCC
Confidence 78889999988885 676553 78899999999888 677 456888899999888884 776 3 23888888888
Q ss_pred CcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCC
Q 048561 173 NNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLP 252 (382)
Q Consensus 173 n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 252 (382)
|.+++ +|. ...+|++|++++|.++ + +|. .+++|+.|++++|.+++ +|
T Consensus 130 N~l~~-lp~--~l~~L~~L~Ls~N~l~-------------------------~-lp~---~l~~L~~L~Ls~N~L~~-lp 176 (571)
T 3cvr_A 130 NQLTM-LPE--LPALLEYINADNNQLT-------------------------M-LPE---LPTSLEVLSVRNNQLTF-LP 176 (571)
T ss_dssp SCCSC-CCC--CCTTCCEEECCSSCCS-------------------------C-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred CcCCC-CCC--cCccccEEeCCCCccC-------------------------c-CCC---cCCCcCEEECCCCCCCC-cc
Confidence 88875 444 2345555555555544 3 332 46789999999999996 77
Q ss_pred cCCCCCCCCCEEeCcCCcCcccCchhhcCCCCC-------CEEEcccccCcccCCcccCCCCCCEEEccCCCCCC
Q 048561 253 CSLGCLEKIERLNLSGNLLYGQVPEVLCALDNL-------VNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 253 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~ 320 (382)
. +. ++|+.|++++|.|+ .+|. +.. +| +.|+|++|+|+.++..+..+++|+.|+|++|.|++
T Consensus 177 ~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 177 E-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp C-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred h-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 6 65 89999999999999 6777 554 77 99999999999988878889999999999999987
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.9e-20 Score=176.88 Aligned_cols=238 Identities=13% Similarity=0.033 Sum_probs=177.4
Q ss_pred eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcc-cccCCCCCcE-EEe
Q 048561 70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPV-AILGKNDLSF-LDI 147 (382)
Q Consensus 70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~-L~L 147 (382)
+.++-++++++. +|..+ .+++++|+|++|+|+...+.+|+++++|++|+|++|++.+.+|. .|.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt~--iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTE--IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCS--CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCc--cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 346778888886 33333 36899999999999965556799999999999999999766664 5788888775 677
Q ss_pred cCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccC-cccccccc-hhHHHhhhhHHHHHhhcccc
Q 048561 148 RFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFAN-NKFTGSIP-RSIGKLSSTLIEVLFLNNLL 223 (382)
Q Consensus 148 s~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~-n~l~~~lp-~~l~~l~~~L~~L~l~~n~l 223 (382)
+.|+++...|..+. +++|++|++++|.+....+..+.. .++..+++.+ +.+. .++ ..+..+...++.|++++|.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccc
Confidence 78999844445444 899999999999998766655544 6677788866 4565 444 34555545678899999999
Q ss_pred CCCCchhcccCcCCCccccCC-ccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcc
Q 048561 224 TGCLPYELGFLREARVFDASN-NRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC 302 (382)
Q Consensus 224 ~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 302 (382)
+...+ ......+|+.|++++ |.++...+..|..+++|++|++++|+|+ .+|.. .+.+|+.|.+.++.--...|.+
T Consensus 167 ~~i~~-~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~l 242 (350)
T 4ay9_X 167 QEIHN-SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPTL 242 (350)
T ss_dssp CEECT-TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCCT
T ss_pred cCCCh-hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCCc
Confidence 85444 444567899999975 6677444467899999999999999999 55543 3467777777666433344568
Q ss_pred cCCCCCCEEEccCC
Q 048561 303 RKLIKNGVLDVNRN 316 (382)
Q Consensus 303 ~~l~~L~~L~L~~N 316 (382)
..+++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 89999999999764
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=8e-19 Score=155.73 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=133.2
Q ss_pred CCCCCCCCCCCCCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCC
Q 048561 39 NITSTWIGSDICKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQ 114 (382)
Q Consensus 39 ~~~~~W~~~~~C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~ 114 (382)
..-..|.+.+.|.|.++.|....-. ....+++.|++++|.+.+ +.+..|.++++|++|++++|.++...+..|..
T Consensus 8 ~~~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 86 (229)
T 3e6j_A 8 HHSAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDS 86 (229)
T ss_dssp ---CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred hhhccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhccc
Confidence 3445666778899999999763211 113578999999999998 56778999999999999999998666667899
Q ss_pred CCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-Ccchhhh
Q 048561 115 LPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLT 192 (382)
Q Consensus 115 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~ 192 (382)
+++|++|+|++|++++..+..|..+++|++|+|++|.++ .+|..+. +++|++|++++|.+++..+..+.. .+|++|+
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 999999999999999666667889999999999999999 8887766 899999999999998776666766 7899999
Q ss_pred ccCcccccc
Q 048561 193 FANNKFTGS 201 (382)
Q Consensus 193 l~~n~l~~~ 201 (382)
+++|.+...
T Consensus 166 l~~N~~~c~ 174 (229)
T 3e6j_A 166 LFGNPWDCE 174 (229)
T ss_dssp CTTSCBCTT
T ss_pred eeCCCccCC
Confidence 999988754
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=4.6e-19 Score=163.06 Aligned_cols=170 Identities=25% Similarity=0.326 Sum_probs=98.7
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
+++.|+++++.+.. ++ .+..+++|++|++++|.+++.. . +..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus 47 ~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 47 SIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp TCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred cccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 45555555555544 12 2455555555555555555322 2 5555555555555555542 22 2555555555555
Q ss_pred cCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCC
Q 048561 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCL 227 (382)
Q Consensus 148 s~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~ 227 (382)
++|.++ .++....+++|++|++++|.++ +.
T Consensus 120 ~~n~i~-~~~~l~~l~~L~~L~l~~n~l~------------------------------------------------~~- 149 (291)
T 1h6t_A 120 EHNGIS-DINGLVHLPQLESLYLGNNKIT------------------------------------------------DI- 149 (291)
T ss_dssp TTSCCC-CCGGGGGCTTCCEEECCSSCCC------------------------------------------------CC-
T ss_pred CCCcCC-CChhhcCCCCCCEEEccCCcCC------------------------------------------------cc-
Confidence 555555 2332222445555555444432 11
Q ss_pred chhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccC
Q 048561 228 PYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG 299 (382)
Q Consensus 228 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 299 (382)
..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+++..+
T Consensus 150 -~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 150 -TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred -hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccCCc
Confidence 234566778888888888875433 7778888888888888874 44 3777888888888888877643
No 98
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=6.6e-20 Score=188.95 Aligned_cols=247 Identities=16% Similarity=0.159 Sum_probs=141.2
Q ss_pred hhhhHHHHHHHHHHHHhCcCCCCCCCCCCCCC--CCCCcCceeeCCCCC-----------CCcccceeEEEcCCCCCCCC
Q 048561 16 DQRLAAIYPIIQTFKNTITSDPFNITSTWIGS--DICKYKGFYCGHPPD-----------NLTAIALASIDFNGFELAAP 82 (382)
Q Consensus 16 ~~~~~~~~~aL~~~k~~~~~~~~~~~~~W~~~--~~C~w~gv~c~~~~~-----------~~~~~~l~~L~L~~~~l~~~ 82 (382)
.+....+++||.++..+.....+.....|... ..+.|.+..+..+.. ......++.++|+.+.+.+.
T Consensus 127 ~s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~ 206 (727)
T 4b8c_D 127 KSLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVSTPLTPKIELFANGKDEANQALLQHKKLSQYSIDED 206 (727)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTC-------------------------------------------------------
T ss_pred hhccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecCCccceEEeeCCCCCcchhhHhhcCccCcccccCc
Confidence 44566778899999988765556666677532 346777766554210 00112234455555554431
Q ss_pred --------CCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCC
Q 048561 83 --------TLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTG 154 (382)
Q Consensus 83 --------~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 154 (382)
.++..+..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|..+++|++|+|++|.|+
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred cccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 24666889999999999999999 78888889999999999999999 89999999999999999999999
Q ss_pred CCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcc
Q 048561 155 SVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELG 232 (382)
Q Consensus 155 ~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~ 232 (382)
.+|..+. +++|++|+|++|.++ .+|..|+. .+|++|++++|.+++.+|..+.........+++++|.+++.+|..
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~-- 360 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE-- 360 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc--
Confidence 8888777 899999999999986 77887877 889999999999999999888776445566899999999888764
Q ss_pred cCcCCCccccCCc--------cCCCCCCcCCCCCCCCCEEeCcCCcCc
Q 048561 233 FLREARVFDASNN--------RLTGPLPCSLGCLEKIERLNLSGNLLY 272 (382)
Q Consensus 233 ~l~~L~~L~Ls~n--------~l~~~~p~~~~~l~~L~~L~L~~N~l~ 272 (382)
|+.|+++.| .+.+..+..+..+..+....+++|-+.
T Consensus 361 ----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 361 ----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ---------------------------------------------CCC
T ss_pred ----cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 455666666 333333444455666677777777764
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=2.5e-19 Score=156.45 Aligned_cols=178 Identities=15% Similarity=0.086 Sum_probs=133.6
Q ss_pred eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecC
Q 048561 70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF 149 (382)
Q Consensus 70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 149 (382)
+.++.+++++.. ++.. -.++|++|++++|.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~--~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTS--VPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSS--CCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccC--CCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 567888888876 2322 356899999999999977666789999999999999999966556678999999999999
Q ss_pred CCCCCCCCcc-cc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCC
Q 048561 150 NFFTGSVPPQ-VF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGC 226 (382)
Q Consensus 150 n~l~~~~p~~-~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~ 226 (382)
|.++ .++.. +. +++|++|++++|.+++..+..+.. .+|++|++++|.++ +.
T Consensus 86 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-------------------------~~ 139 (208)
T 2o6s_A 86 NQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-------------------------SV 139 (208)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-------------------------CC
T ss_pred CcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-------------------------ee
Confidence 9999 45543 33 899999999999988665555544 55666666666555 33
Q ss_pred CchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCC
Q 048561 227 LPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDN 284 (382)
Q Consensus 227 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 284 (382)
.+..+..+++|++|++++|.+.+ .+++|++|++..|+++|.+|.+++.++.
T Consensus 140 ~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 140 PDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred CHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 33446667788888888886653 3456778888888888888877776554
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=5.1e-19 Score=178.31 Aligned_cols=189 Identities=20% Similarity=0.245 Sum_probs=113.6
Q ss_pred EEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCC
Q 048561 71 SIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN 150 (382)
Q Consensus 71 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 150 (382)
.+.+..+.+.+ . ..+..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+ +..+++|++|+|++|
T Consensus 25 ~l~l~~~~i~~-~--~~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 25 KDNLKKKSVTD-A--VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHTTCSCTTS-E--ECHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHhccCCCccc-c--cchhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 34444444443 1 113456667777777776663 33 46667777777777777764332 666777777777777
Q ss_pred CCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchh
Q 048561 151 FFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYE 230 (382)
Q Consensus 151 ~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~ 230 (382)
.+. .++....+++|+.|+|++|.+.+. +. +..+ ++|+.|+|++|.+.+. ..
T Consensus 98 ~l~-~l~~l~~l~~L~~L~Ls~N~l~~l-~~------------------------l~~l-~~L~~L~Ls~N~l~~l--~~ 148 (605)
T 1m9s_A 98 KIK-DLSSLKDLKKLKSLSLEHNGISDI-NG------------------------LVHL-PQLESLYLGNNKITDI--TV 148 (605)
T ss_dssp CCC-CCTTSTTCTTCCEEECTTSCCCCC-GG------------------------GGGC-TTCSEEECCSSCCCCC--GG
T ss_pred CCC-CChhhccCCCCCEEEecCCCCCCC-cc------------------------ccCC-CccCEEECCCCccCCc--hh
Confidence 766 344333366666666666665431 11 1111 2233333333333322 34
Q ss_pred cccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccC
Q 048561 231 LGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG 299 (382)
Q Consensus 231 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 299 (382)
+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.|.+ ++ .+..+++|+.|+|++|.+++.+
T Consensus 149 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECCC
T ss_pred hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCCc
Confidence 5667778888888888875544 7777888888888888874 33 4777788888888888877653
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=6.5e-18 Score=155.36 Aligned_cols=190 Identities=22% Similarity=0.250 Sum_probs=154.8
Q ss_pred EEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCC
Q 048561 71 SIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN 150 (382)
Q Consensus 71 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 150 (382)
.+.+....+.+. ..+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++. +. +..+++|++|++++|
T Consensus 28 ~~~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 28 KDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHTTCSCTTSE---ECHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSS
T ss_pred HHHhcCCCcccc---cchhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCC
Confidence 334455544441 224578899999999999984 44 488899999999999999954 44 899999999999999
Q ss_pred CCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchh
Q 048561 151 FFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYE 230 (382)
Q Consensus 151 ~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~ 230 (382)
.++ .++....+++|++|++++|.+++ + ..
T Consensus 101 ~l~-~~~~l~~l~~L~~L~L~~n~i~~------------------------~--------------------------~~ 129 (291)
T 1h6t_A 101 KVK-DLSSLKDLKKLKSLSLEHNGISD------------------------I--------------------------NG 129 (291)
T ss_dssp CCC-CGGGGTTCTTCCEEECTTSCCCC------------------------C--------------------------GG
T ss_pred cCC-CChhhccCCCCCEEECCCCcCCC------------------------C--------------------------hh
Confidence 998 56654448899999999887642 0 12
Q ss_pred cccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCE
Q 048561 231 LGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGV 310 (382)
Q Consensus 231 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~ 310 (382)
+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.|+++. .+..+++|+.
T Consensus 130 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~ 204 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDV 204 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSE
T ss_pred hcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh-hhccCCCCCE
Confidence 45677899999999999954 578899999999999999996544 889999999999999999864 5889999999
Q ss_pred EEccCCCCCCCCC
Q 048561 311 LDVNRNCIHYLPD 323 (382)
Q Consensus 311 L~L~~N~l~~lp~ 323 (382)
|++++|+++..|.
T Consensus 205 L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 205 LELFSQECLNKPI 217 (291)
T ss_dssp EEEEEEEEECCCE
T ss_pred EECcCCcccCCcc
Confidence 9999999988764
No 102
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=3.5e-22 Score=200.13 Aligned_cols=190 Identities=19% Similarity=0.124 Sum_probs=146.3
Q ss_pred CCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCC-------------CCCCCCcccc-cCCCCEEe-CCCCcCCC
Q 048561 113 AQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNF-------------FTGSVPPQVF-MQTLDVLF-LNNNNFMQ 177 (382)
Q Consensus 113 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~~~-l~~L~~L~-L~~n~l~~ 177 (382)
..+++|+.|+|++|.++ .+|..++.+++|++|++++|. +.+..|..+. +++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 56788888999999887 788888888888888887664 3333444333 55566665 444432
Q ss_pred cCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCC
Q 048561 178 KLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGC 257 (382)
Q Consensus 178 ~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 257 (382)
..+..+.+.+|.+. .++ . ..|+.|++++|.+++ +|. +..+++|+.|++++|.|+ .+|..++.
T Consensus 423 --------~~L~~l~l~~n~i~-~l~----~--~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 423 --------DDLRSKFLLENSVL-KME----Y--ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp --------HHHHHHHHHHHHHH-HHH----H--TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred --------chhhhhhhhccccc-ccC----c--cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 23445555555544 111 1 246778899999986 565 899999999999999999 78889999
Q ss_pred CCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCccc--CCcccCCCCCCEEEccCCCCCCCCCcc
Q 048561 258 LEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV--GPLCRKLIKNGVLDVNRNCIHYLPDQR 325 (382)
Q Consensus 258 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~L~~N~l~~lp~~~ 325 (382)
+++|+.|+|++|.|++ +| .+..+++|+.|+|++|+|++. +..+..+++|+.|+|++|.|+++|+..
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 9999999999999995 67 788999999999999999998 567899999999999999999988643
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=1.6e-17 Score=146.35 Aligned_cols=150 Identities=15% Similarity=0.134 Sum_probs=124.6
Q ss_pred CCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeec
Q 048561 50 CKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISN 125 (382)
Q Consensus 50 C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~ 125 (382)
|.|..+.|....-. .....++.|++++|++.+ +.+..|..+++|++|++++|.+++..|..|..+++|++|+|++
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~-i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCC-cCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 78889999753211 012478999999999987 5666789999999999999999988899999999999999999
Q ss_pred CCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCccccc
Q 048561 126 NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTG 200 (382)
Q Consensus 126 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~ 200 (382)
|.++...+..|..+++|++|+|++|.+++..+..+. +++|++|++++|.+++..+..+.. .+|++|++++|.+..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999955555578899999999999999966566555 899999999999998887777776 788999999998863
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2.5e-17 Score=145.08 Aligned_cols=153 Identities=19% Similarity=0.172 Sum_probs=84.4
Q ss_pred CEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCc-ccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCC
Q 048561 95 SLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFP-VAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNN 172 (382)
Q Consensus 95 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~ 172 (382)
+.+++++|.++ .+|..+. ..+++|+|++|.+++..+ ..|..+++|++|+|++|.+++..+..+. +++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35666666665 3454432 334566666666654323 2345556666666666655532222222 44555555554
Q ss_pred CcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCC
Q 048561 173 NNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLP 252 (382)
Q Consensus 173 n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 252 (382)
|.+++ ..+..|..+++|++|++++|.+++..|
T Consensus 91 N~l~~------------------------------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 122 (220)
T 2v70_A 91 NRLEN------------------------------------------------VQHKMFKGLESLKTLMLRSNRITCVGN 122 (220)
T ss_dssp SCCCC------------------------------------------------CCGGGGTTCSSCCEEECTTSCCCCBCT
T ss_pred CccCc------------------------------------------------cCHhHhcCCcCCCEEECCCCcCCeECH
Confidence 44332 122234455666666666666666556
Q ss_pred cCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCccc
Q 048561 253 CSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGV 298 (382)
Q Consensus 253 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 298 (382)
..|..+++|++|++++|.|++..|..+..+++|++|+|++|.+.+.
T Consensus 123 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 6666666666666666666655566666666666666666666543
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=2.9e-17 Score=165.55 Aligned_cols=171 Identities=22% Similarity=0.303 Sum_probs=137.3
Q ss_pred ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561 66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145 (382)
Q Consensus 66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 145 (382)
...|+.|+++++.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+++ ++ .+..+++|++|
T Consensus 42 L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred CCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 3468899999999987 33 48899999999999999996544 8999999999999999984 44 68999999999
Q ss_pred EecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCC
Q 048561 146 DIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTG 225 (382)
Q Consensus 146 ~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~ 225 (382)
+|++|.+. .++....+++|+.|+|++|.+++. ..+. .+ ++|+.|+|++|.+.+
T Consensus 115 ~Ls~N~l~-~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~-----------------------~l-~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 115 SLEHNGIS-DINGLVHLPQLESLYLGNNKITDI--TVLS-----------------------RL-TKLDTLSLEDNQISD 167 (605)
T ss_dssp ECTTSCCC-CCGGGGGCTTCSEEECCSSCCCCC--GGGG-----------------------SC-TTCSEEECCSSCCCC
T ss_pred EecCCCCC-CCccccCCCccCEEECCCCccCCc--hhhc-----------------------cc-CCCCEEECcCCcCCC
Confidence 99999999 566555589999999999988753 2222 22 345555555555554
Q ss_pred CCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCccc
Q 048561 226 CLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQ 274 (382)
Q Consensus 226 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 274 (382)
..+ +..+++|+.|+|++|.|++ ++ .+..+++|+.|+|++|.+.+.
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred chh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence 444 7788999999999999995 44 688999999999999999854
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=3.7e-18 Score=150.46 Aligned_cols=151 Identities=17% Similarity=0.147 Sum_probs=90.8
Q ss_pred CEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcc
Q 048561 119 YELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNK 197 (382)
Q Consensus 119 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~ 197 (382)
+.++++++.++ .+|..+. ++|++|++++|.+++..+..+. +++|++|++++|.+++..|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~----------------- 73 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP----------------- 73 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-----------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-----------------
Confidence 56777777776 5665553 5677777777777733332333 5667777776666543333
Q ss_pred cccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCch
Q 048561 198 FTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPE 277 (382)
Q Consensus 198 l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 277 (382)
..|.++++|++|+|++|.|+...+..|..+++|++|++++|.|++..+.
T Consensus 74 -------------------------------~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~ 122 (220)
T 2v9t_B 74 -------------------------------DAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVD 122 (220)
T ss_dssp -------------------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred -------------------------------HHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHH
Confidence 3444555666666666666644444455566666666666666655555
Q ss_pred hhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEccCCCCCC
Q 048561 278 VLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 278 ~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~ 320 (382)
.+..+++|++|+|++|+|+++++ .+..+++|+.|+|++|.+..
T Consensus 123 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 66666666666666666666554 35556666666666666544
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=6.2e-18 Score=146.32 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=26.5
Q ss_pred ccCcCCCccccCCcc-CCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccC
Q 048561 232 GFLREARVFDASNNR-LTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYF 295 (382)
Q Consensus 232 ~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 295 (382)
..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+|
T Consensus 133 ~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp TTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred hhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 344455555555554 33 233 34444455555555554442 22 334444444444444444
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=1.6e-16 Score=140.73 Aligned_cols=102 Identities=18% Similarity=0.152 Sum_probs=60.2
Q ss_pred eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecC
Q 048561 70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF 149 (382)
Q Consensus 70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 149 (382)
+.++.+++++.. ++..+ .++|++|++++|.+++..|..|..+++|++|+|++|+++...+..|..+++|++|+|++
T Consensus 22 ~~v~c~~~~l~~--ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHAS--VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcCc--cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456777776665 22222 26677777777777766666666777777777777777643334456666677777776
Q ss_pred CCCCCCCCcccc-cCCCCEEeCCCCcC
Q 048561 150 NFFTGSVPPQVF-MQTLDVLFLNNNNF 175 (382)
Q Consensus 150 n~l~~~~p~~~~-l~~L~~L~L~~n~l 175 (382)
|.+++..+..+. +++|++|++++|.+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcc
Confidence 666622222222 55555555555544
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=9.5e-18 Score=151.97 Aligned_cols=169 Identities=21% Similarity=0.286 Sum_probs=104.3
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
+++.++++++.+.+ ++ .+..+++|++|++++|.++ .++ .+..+++|++|+|++|.+++ ++. +..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEEC
Confidence 45556666666665 22 3566777777777777776 344 56667777777777777763 333 667777777777
Q ss_pred cCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCC
Q 048561 148 RFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCL 227 (382)
Q Consensus 148 s~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~ 227 (382)
++|.++ .++.... ++|++|++++|.+++.
T Consensus 93 ~~N~l~-~l~~~~~-~~L~~L~L~~N~l~~~------------------------------------------------- 121 (263)
T 1xeu_A 93 NRNRLK-NLNGIPS-ACLSRLFLDNNELRDT------------------------------------------------- 121 (263)
T ss_dssp CSSCCS-CCTTCCC-SSCCEEECCSSCCSBS-------------------------------------------------
T ss_pred CCCccC-CcCcccc-CcccEEEccCCccCCC-------------------------------------------------
Confidence 777776 3444333 5566666666554321
Q ss_pred chhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccC
Q 048561 228 PYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG 299 (382)
Q Consensus 228 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 299 (382)
..+..+++|+.|++++|++++ ++ .+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+
T Consensus 122 -~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 122 -DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred -hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence 123455666666777766663 33 455666677777777776643 45666667777777777666543
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.4e-17 Score=157.87 Aligned_cols=126 Identities=18% Similarity=0.174 Sum_probs=92.4
Q ss_pred eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccC-CCCCCCEEEeecCCCCccCcccccCCCCCcEEEec
Q 048561 70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLA-QLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIR 148 (382)
Q Consensus 70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 148 (382)
+.++++++++.. ++..+ ...++.|+|++|.+++..+..+. .+++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~--iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN--VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS--CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc--cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 468899998887 33323 34689999999999977777777 89999999999999997666789999999999999
Q ss_pred CCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccc
Q 048561 149 FNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFT 199 (382)
Q Consensus 149 ~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~ 199 (382)
+|.+++..+..+. +++|++|+|++|.+++..+..+.. .+|++|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 9999843333343 788899988888876554444433 34444444444443
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=145.07 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=125.6
Q ss_pred CCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeec
Q 048561 50 CKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISN 125 (382)
Q Consensus 50 C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~ 125 (382)
|.|..+.|....-. .....++.|++++|++.+......|.++++|++|++++|.+++..+..|..+++|++|+|++
T Consensus 11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 68888888642110 11235689999999998743456688999999999999999977777899999999999999
Q ss_pred CCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccc
Q 048561 126 NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIP 203 (382)
Q Consensus 126 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp 203 (382)
|.+++..+..|..+++|++|+|++|.+++..|..+. +++|++|++++|.+++..|..+.. .+|++|++++|.+...-+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 999977777789999999999999999966666655 899999999999999888888877 788999999998885543
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=1.5e-18 Score=164.64 Aligned_cols=173 Identities=18% Similarity=0.186 Sum_probs=110.5
Q ss_pred CEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCccc--ccCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccC
Q 048561 119 YELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV--FMQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFAN 195 (382)
Q Consensus 119 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--~l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~ 195 (382)
+.++++++.++ .+|..+. ..+++|+|++|.+++..+..+ .+++|++|+|++|.+++..+..|.. .+|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 68899999988 6777654 458899999999985444444 4788999999999887766666655 5566666666
Q ss_pred cccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccC
Q 048561 196 NKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQV 275 (382)
Q Consensus 196 n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 275 (382)
|.+++ ..+..|..+++|++|+|++|.|++..+..|..+++|+.|+|++|.|++..
T Consensus 98 N~l~~-------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 98 NHLHT-------------------------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp SCCCE-------------------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred CcCCc-------------------------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 66552 23334555666666666666666555566666666666666666666332
Q ss_pred chhh---cCCCCCCEEEcccccCcccCC-cccCCCC--CCEEEccCCCCC
Q 048561 276 PEVL---CALDNLVNLSLSNNYFTGVGP-LCRKLIK--NGVLDVNRNCIH 319 (382)
Q Consensus 276 p~~~---~~l~~L~~L~L~~N~l~~~~~-~~~~l~~--L~~L~L~~N~l~ 319 (382)
+..+ ..+++|+.|+|++|+|++++. .+..++. ++.|+|++|.+.
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 3333 345666666666666665543 3344444 355666666654
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=5e-18 Score=153.78 Aligned_cols=174 Identities=18% Similarity=0.158 Sum_probs=134.6
Q ss_pred CCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccccCCCCEEe
Q 048561 90 QLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLF 169 (382)
Q Consensus 90 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~ 169 (382)
++.++..+++.++.+++. + .+..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .++....+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSPLKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGGGTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChhhccCCCCCEEE
Confidence 345566677777777743 3 4677788888888888887 555 5777888888888888887 444433377788887
Q ss_pred CCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCC
Q 048561 170 LNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTG 249 (382)
Q Consensus 170 L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 249 (382)
+++|.+++ ++ . +.. ++|+.|++++|.+++
T Consensus 92 L~~N~l~~------------------------l~-------------------------~-~~~-~~L~~L~L~~N~l~~ 120 (263)
T 1xeu_A 92 VNRNRLKN------------------------LN-------------------------G-IPS-ACLSRLFLDNNELRD 120 (263)
T ss_dssp CCSSCCSC------------------------CT-------------------------T-CCC-SSCCEEECCSSCCSB
T ss_pred CCCCccCC------------------------cC-------------------------c-ccc-CcccEEEccCCccCC
Confidence 77776542 11 0 111 789999999999995
Q ss_pred CCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCCCCc
Q 048561 250 PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYLPDQ 324 (382)
Q Consensus 250 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 324 (382)
++ .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++++. ..+..+++|+.|++++|.++..|..
T Consensus 121 -~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 121 -TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp -SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred -Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCccc
Confidence 43 58899999999999999995 44 688899999999999999998 6788999999999999999987743
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=1.2e-20 Score=188.86 Aligned_cols=167 Identities=22% Similarity=0.129 Sum_probs=105.6
Q ss_pred cCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHH
Q 048561 137 LGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIE 215 (382)
Q Consensus 137 ~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~ 215 (382)
..+++|+.|+|++|.++ .+|..+. +++|+.|++++|......+ ..+..+...+..|..+..+ ++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~----------~ll~~~~~~~~~~~~l~~l-~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTII----------LLMRALDPLLYEKETLQYF-STLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHH----------HHHHHHCTGGGHHHHHHHH-HHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHH----------HHHHhcccccCCHHHHHHH-Hhccc
Confidence 45677888888888877 7777766 7778888776553110000 0011111223344444444 44444
Q ss_pred HH--------------hhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcC
Q 048561 216 VL--------------FLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCA 281 (382)
Q Consensus 216 L~--------------l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 281 (382)
|+ +.+|.+.... ...|+.|++++|.|++ +|. ++.+++|+.|++++|.|+ .+|..++.
T Consensus 414 L~~l~~n~~~~L~~l~l~~n~i~~l~------~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 414 VDPMRAAYLDDLRSKFLLENSVLKME------YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp HCGGGHHHHHHHHHHHHHHHHHHHHH------HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred CcchhhcccchhhhhhhhcccccccC------ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhc
Confidence 44 3333332111 1247778888888874 565 777788888888888887 67777888
Q ss_pred CCCCCEEEcccccCcccCCcccCCCCCCEEEccCCCCCCC--CCcc
Q 048561 282 LDNLVNLSLSNNYFTGVGPLCRKLIKNGVLDVNRNCIHYL--PDQR 325 (382)
Q Consensus 282 l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~L~~N~l~~l--p~~~ 325 (382)
+++|+.|+|++|.|++++ .+..+++|+.|+|++|.|+++ |+.+
T Consensus 485 l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l 529 (567)
T 1dce_A 485 LRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPL 529 (567)
T ss_dssp CTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred CCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence 888888888888888754 777788888888888888877 5443
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=5.5e-17 Score=140.30 Aligned_cols=84 Identities=18% Similarity=0.132 Sum_probs=43.5
Q ss_pred cCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCc-CcccCchhhcCCCCCCEEEcccccCcccCCcccCCCCCCEE
Q 048561 233 FLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNL-LYGQVPEVLCALDNLVNLSLSNNYFTGVGPLCRKLIKNGVL 311 (382)
Q Consensus 233 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L 311 (382)
.+++|++|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.++++. .+..+++|+.|
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQL 186 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEE
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEE
Confidence 34455555555555554444455555555555555555 33 333 3555555555555555555543 44555555555
Q ss_pred EccCCCCC
Q 048561 312 DVNRNCIH 319 (382)
Q Consensus 312 ~L~~N~l~ 319 (382)
++++|+|.
T Consensus 187 ~l~~N~i~ 194 (197)
T 4ezg_A 187 YAFSQTIG 194 (197)
T ss_dssp EECBC---
T ss_pred EeeCcccC
Confidence 55555543
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.67 E-value=9.5e-16 Score=132.01 Aligned_cols=129 Identities=21% Similarity=0.280 Sum_probs=81.1
Q ss_pred EEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCc-ccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecC
Q 048561 71 SIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISP-KLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF 149 (382)
Q Consensus 71 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 149 (382)
.++++++++.. ++..+. .+|++|++++|.+++..+. .++.+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 12 ~l~~s~~~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 12 TVDCTGRGLKE--IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EEECTTSCCSS--CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCcCc--CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34555555543 222222 2677777777777644443 366677777777777777766666677777777777777
Q ss_pred CCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccc
Q 048561 150 NFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIP 203 (382)
Q Consensus 150 n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp 203 (382)
|.+++..+..+. +++|++|++++|.+++..|..+.. .+|++|++++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 777744444343 677777777777777666666665 567777777777665544
No 117
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=4.5e-19 Score=178.68 Aligned_cols=253 Identities=17% Similarity=0.093 Sum_probs=154.7
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcC--------------------------cccCCcccCCCCCCCE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKF--------------------------SGTISPKLAQLPYLYE 120 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l--------------------------~~~~p~~l~~l~~L~~ 120 (382)
.+++.|+++++.+.+ .+..+.++++|+.|+++.... .+.+|..+..+++|++
T Consensus 220 ~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp TTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred CCCcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 357778888776654 334455555666665543211 1234445555666777
Q ss_pred EEeecCCCCccCc-ccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCC-----------CcCCCcCCcCC-C-C
Q 048561 121 LDISNNKFSGTFP-VAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNN-----------NNFMQKLPQNL-G-S 185 (382)
Q Consensus 121 L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~-----------n~l~~~~p~~~-~-~ 185 (382)
|+|++|.+++... ..+..+++|++|+++++...+.++.... +++|++|++++ |.+++.....+ . .
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 7777666553322 2345666777777762221212222222 57788888773 34433211111 1 2
Q ss_pred CcchhhhccCcccccccchhHHHhhhhHHHHHhh----ccccCCC-----CchhcccCcCCCccccCCcc--CCCCCCcC
Q 048561 186 TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFL----NNLLTGC-----LPYELGFLREARVFDASNNR--LTGPLPCS 254 (382)
Q Consensus 186 ~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~ 254 (382)
.+|++|++..|.+++..+..+....++|+.|+++ .|.+++. ++..+.++++|++|++++|. +++.....
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 5677788877777766666666533677888885 4556543 23335678888888887543 44333333
Q ss_pred CC-CCCCCCEEeCcCCcCcc-cCchhhcCCCCCCEEEcccccCccc--CCcccCCCCCCEEEccCCCCCCC
Q 048561 255 LG-CLEKIERLNLSGNLLYG-QVPEVLCALDNLVNLSLSNNYFTGV--GPLCRKLIKNGVLDVNRNCIHYL 321 (382)
Q Consensus 255 ~~-~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~L~~N~l~~l 321 (382)
+. .+++|++|++++|.+++ .++..+..+++|++|++++|.+++. ...+..+++|+.|+|++|+++..
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 32 36889999999999875 3455667889999999999998753 22345788999999999998764
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=3.3e-16 Score=134.93 Aligned_cols=130 Identities=21% Similarity=0.270 Sum_probs=110.2
Q ss_pred CCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeec
Q 048561 50 CKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISN 125 (382)
Q Consensus 50 C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~ 125 (382)
|.|..+.|....-. .....++.|++++|.+.+......|+++++|++|++++|.+++..|..|..+++|++|+|++
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78888888753210 01237899999999998832234589999999999999999988899999999999999999
Q ss_pred CCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcC
Q 048561 126 NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKL 179 (382)
Q Consensus 126 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~ 179 (382)
|++++..+..|..+++|++|+|++|++++..|..+. +++|++|++++|.+.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 999988888899999999999999999987777766 899999999999987643
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.65 E-value=2.9e-19 Score=180.11 Aligned_cols=110 Identities=15% Similarity=0.023 Sum_probs=60.4
Q ss_pred hhHHHHHhhccccCCCCchhccc-CcCCCccccC----CccCCCC-----CCcCCCCCCCCCEEeCcCCc--CcccCchh
Q 048561 211 STLIEVLFLNNLLTGCLPYELGF-LREARVFDAS----NNRLTGP-----LPCSLGCLEKIERLNLSGNL--LYGQVPEV 278 (382)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls----~n~l~~~-----~p~~~~~l~~L~~L~L~~N~--l~~~~p~~ 278 (382)
++|+.|++..|.+++.....+.. +++|+.|+++ .|.+++. ++..+.++++|++|++++|. +++..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 34444555444444433333333 5566666664 4445432 11123346667777775432 44433333
Q ss_pred hc-CCCCCCEEEcccccCccc--CCcccCCCCCCEEEccCCCCCC
Q 048561 279 LC-ALDNLVNLSLSNNYFTGV--GPLCRKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 279 ~~-~l~~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~L~~N~l~~ 320 (382)
+. .+++|++|++++|++++. ...+..+++|+.|+|++|.|+.
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 33 367788888888877652 2234667788888888887653
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=6e-17 Score=136.28 Aligned_cols=136 Identities=26% Similarity=0.210 Sum_probs=105.3
Q ss_pred CCCCEEeCCCCcCC-CcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccc
Q 048561 163 QTLDVLFLNNNNFM-QKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFD 241 (382)
Q Consensus 163 ~~L~~L~L~~n~l~-~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 241 (382)
++|++|++++|.++ +.+|..+ ..+ ++|+.|++++|.+.+. ..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~-----------------------~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~ 77 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLT-----------------------AEF-VNLEFLSLINVGLISV--SNLPKLPKLKKLE 77 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCC-----------------------GGG-GGCCEEEEESSCCCCC--SSCCCCSSCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHH-----------------------HhC-CCCCEEeCcCCCCCCh--hhhccCCCCCEEE
Confidence 56777777777765 3444433 333 4555556666665544 5677889999999
Q ss_pred cCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccC-chhhcCCCCCCEEEcccccCcccCC----cccCCCCCCEEEccCC
Q 048561 242 ASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQV-PEVLCALDNLVNLSLSNNYFTGVGP----LCRKLIKNGVLDVNRN 316 (382)
Q Consensus 242 Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~----~~~~l~~L~~L~L~~N 316 (382)
+++|.+++.+|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|.+++.++ .+..+++|+.|++++|
T Consensus 78 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 9999999767777777899999999999998532 2678889999999999999998877 6788999999999999
Q ss_pred CCCCCCCc
Q 048561 317 CIHYLPDQ 324 (382)
Q Consensus 317 ~l~~lp~~ 324 (382)
.++++|+.
T Consensus 158 ~~~~~~~~ 165 (168)
T 2ell_A 158 EDQEAPDS 165 (168)
T ss_dssp TSCBCCSS
T ss_pred Chhhcccc
Confidence 99998864
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=1.7e-16 Score=163.49 Aligned_cols=171 Identities=16% Similarity=0.181 Sum_probs=121.6
Q ss_pred ccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEE
Q 048561 66 AIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFL 145 (382)
Q Consensus 66 ~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 145 (382)
...++.|+|++|.+.. ++..+.++++|++|+|++|.++ .+|..|+.+++|++|+|++|.|+ .+|..|+.+++|++|
T Consensus 223 l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred CCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence 4578999999999985 4455669999999999999999 89999999999999999999999 889999999999999
Q ss_pred EecCCCCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCCC--cchhhhccCcccccccchhHHHhhhhHHHHHhhcc-
Q 048561 146 DIRFNFFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGST--PALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNN- 221 (382)
Q Consensus 146 ~Ls~n~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~~--~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n- 221 (382)
+|++|.|+ .+|..+. +++|++|+|++|.+++.+|..+... ....+++++|.+++.+|..+ ..|+++.|
T Consensus 299 ~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l-------~~l~l~~n~ 370 (727)
T 4b8c_D 299 YFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER-------RFIEINTDG 370 (727)
T ss_dssp ECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------
T ss_pred ECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc-------ceeEeeccc
Confidence 99999998 8888766 8999999999999999988887663 33467899999999888644 44455554
Q ss_pred -------ccCCCCchhcccCcCCCccccCCccCC
Q 048561 222 -------LLTGCLPYELGFLREARVFDASNNRLT 248 (382)
Q Consensus 222 -------~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 248 (382)
.+.+..+..+..+.+++...+++|-+.
T Consensus 371 ~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 371 EPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------------CCC
T ss_pred ccccccCCccccccchhhcccccceeeeeccccc
Confidence 233333344455666666777777663
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=7.9e-15 Score=124.35 Aligned_cols=110 Identities=16% Similarity=0.104 Sum_probs=59.3
Q ss_pred CCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEeC
Q 048561 92 PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLFL 170 (382)
Q Consensus 92 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~L 170 (382)
++|+.|++++|.+++..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+. +++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 4556666666666544444455566666666666666543334455566666666666666532222222 556666666
Q ss_pred CCCcCCCcCCcCCCC-CcchhhhccCcccccc
Q 048561 171 NNNNFMQKLPQNLGS-TPALYLTFANNKFTGS 201 (382)
Q Consensus 171 ~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~ 201 (382)
++|.+++..+..+.. .+|++|++++|.+.+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 666655444433343 4556666666665543
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=1.4e-15 Score=127.75 Aligned_cols=132 Identities=16% Similarity=0.219 Sum_probs=96.9
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
+++.|++++|.+....++..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 6788888888887223566677888888888888888754 67788888888888888888667777777888888888
Q ss_pred cCCCCCCCCC--cccc-cCCCCEEeCCCCcCCCcCC---cCCCC-CcchhhhccCcccccccc
Q 048561 148 RFNFFTGSVP--PQVF-MQTLDVLFLNNNNFMQKLP---QNLGS-TPALYLTFANNKFTGSIP 203 (382)
Q Consensus 148 s~n~l~~~~p--~~~~-l~~L~~L~L~~n~l~~~~p---~~~~~-~~L~~L~l~~n~l~~~lp 203 (382)
++|.++ .++ ..+. +++|++|++++|.+++..+ ..+.. .+|++|++++|.+. .+|
T Consensus 103 s~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~ 163 (168)
T 2ell_A 103 SGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAP 163 (168)
T ss_dssp BSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCC
T ss_pred cCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcc
Confidence 888887 443 3333 7888888888888775544 24444 66777777777665 444
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=7e-15 Score=126.66 Aligned_cols=91 Identities=26% Similarity=0.215 Sum_probs=54.4
Q ss_pred hcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCC
Q 048561 230 ELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKN 308 (382)
Q Consensus 230 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L 308 (382)
.+..+++|++|++++|.|++..+..|..+++|++|++++|.|++..+..+..+++|++|+|++|.|+.+++ .+..+++|
T Consensus 49 ~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (193)
T 2wfh_A 49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSAL 128 (193)
T ss_dssp GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccc
Confidence 34455556666666666665555556666666666666666665555556666666666666666665554 35556666
Q ss_pred CEEEccCCCCCC
Q 048561 309 GVLDVNRNCIHY 320 (382)
Q Consensus 309 ~~L~L~~N~l~~ 320 (382)
+.|++++|.+..
T Consensus 129 ~~L~L~~N~~~C 140 (193)
T 2wfh_A 129 SHLAIGANPLYC 140 (193)
T ss_dssp CEEECCSSCEEC
T ss_pred cEEEeCCCCeec
Confidence 666666666554
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=3.2e-15 Score=123.01 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=50.3
Q ss_pred CCCCEEEcCCCcCc-ccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cCCCCEEe
Q 048561 92 PDLSLFHANSNKFS-GTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQTLDVLF 169 (382)
Q Consensus 92 ~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~~L~~L~ 169 (382)
++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+. +++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 45555566666666666666666633 4556666666666666666644555444 56666666
Q ss_pred CCCCcCC
Q 048561 170 LNNNNFM 176 (382)
Q Consensus 170 L~~n~l~ 176 (382)
+++|.++
T Consensus 95 ls~N~i~ 101 (149)
T 2je0_A 95 LSGNKIK 101 (149)
T ss_dssp CTTSCCC
T ss_pred CCCCcCC
Confidence 6666554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=5.8e-15 Score=121.45 Aligned_cols=126 Identities=17% Similarity=0.202 Sum_probs=101.1
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
.+++.|++++|.+....++..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 47999999999998224667789999999999999999965 7799999999999999999977888888899999999
Q ss_pred ecCCCCCCC-CCcccc-cCCCCEEeCCCCcCCCcCC---cCCCC-Ccchhhhcc
Q 048561 147 IRFNFFTGS-VPPQVF-MQTLDVLFLNNNNFMQKLP---QNLGS-TPALYLTFA 194 (382)
Q Consensus 147 Ls~n~l~~~-~p~~~~-l~~L~~L~L~~n~l~~~~p---~~~~~-~~L~~L~l~ 194 (382)
+++|.+++. .+..+. +++|++|++++|.+++..+ ..+.. .+|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999842 224444 8999999999999876543 23332 455555543
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=5.2e-14 Score=121.16 Aligned_cols=124 Identities=18% Similarity=0.190 Sum_probs=79.5
Q ss_pred EEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCC
Q 048561 71 SIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN 150 (382)
Q Consensus 71 ~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 150 (382)
.++++++++.. + +..+ .++|++|++++|.++ .+|..|..+++|++|+|++|.|++..+..|.++++|++|+|++|
T Consensus 14 ~l~~~~~~l~~-i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLKV-L-PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCSS-C-CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCCc-C-CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555554 2 2222 246777777777776 56667777777777777777777555566777777777777777
Q ss_pred CCCCCCCcccc-cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccc
Q 048561 151 FFTGSVPPQVF-MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFT 199 (382)
Q Consensus 151 ~l~~~~p~~~~-l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~ 199 (382)
.+++..+..+. +++|++|+|++|.++...+..+.. .+|++|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77744333333 677777777777776555555554 56777777777665
No 128
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.53 E-value=1.6e-17 Score=167.37 Aligned_cols=131 Identities=15% Similarity=0.066 Sum_probs=71.0
Q ss_pred cchhhhccCcccccccchhHHHhhhhHHHHHhh--c----cccCCC-----CchhcccCcCCCccccCCccCCCCCCcCC
Q 048561 187 PALYLTFANNKFTGSIPRSIGKLSSTLIEVLFL--N----NLLTGC-----LPYELGFLREARVFDASNNRLTGPLPCSL 255 (382)
Q Consensus 187 ~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 255 (382)
+|++|.+..|.+++.....+....++|+.|+++ + +.++.. ++..+..+++|+.|++++ .+++.....+
T Consensus 373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 344444444444433333333222455666665 2 233311 111244556666666655 4443222223
Q ss_pred CC-CCCCCEEeCcCCcCcccCchhh-cCCCCCCEEEcccccCcccCC--cccCCCCCCEEEccCCCC
Q 048561 256 GC-LEKIERLNLSGNLLYGQVPEVL-CALDNLVNLSLSNNYFTGVGP--LCRKLIKNGVLDVNRNCI 318 (382)
Q Consensus 256 ~~-l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~L~~N~l 318 (382)
.. +++|+.|++++|.+++.....+ ..+++|++|+|++|.+++... ....+++|+.|++++|++
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 32 5677778887777765444443 556778888888887754321 234567788888888776
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=2.8e-15 Score=140.11 Aligned_cols=244 Identities=15% Similarity=0.098 Sum_probs=142.2
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCC--------CCCCCEEEeecCCCCccCcccccC
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQ--------LPYLYELDISNNKFSGTFPVAILG 138 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~~~~p~~l~~ 138 (382)
.+|+.|||++|++.. ....-+.++.++.+.+..+.+. ..+|.+ +++|+.|+|.+ .++..-...|.+
T Consensus 49 ~~L~~LdLs~n~i~~--~~~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 49 PSLKVLDISNAEIKM--YSGKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp TTCCEEEEEEEEECC--EEESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred ccCeEEecCcceeEE--ecCccccccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 368999999998872 1111122333445555555332 345555 88888888888 777455556778
Q ss_pred CCCCcEEEecCCCCCCCCCcccc--cCCCCEEeCCCCcC----CCcCCcCCCC-Ccch-hhhccCcccccccchhHHHh-
Q 048561 139 KNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNF----MQKLPQNLGS-TPAL-YLTFANNKFTGSIPRSIGKL- 209 (382)
Q Consensus 139 l~~L~~L~Ls~n~l~~~~p~~~~--l~~L~~L~L~~n~l----~~~~p~~~~~-~~L~-~L~l~~n~l~~~lp~~l~~l- 209 (382)
+++|+.|+++.|.+. .++...+ +.++..+.+..+.. .......+.. ..++ .+.+... +.++..+...
T Consensus 123 ~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~ 198 (329)
T 3sb4_A 123 CDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAG 198 (329)
T ss_dssp CTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTT
T ss_pred CcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhcc
Confidence 888888888888877 5665554 34445554443211 1111111111 1222 1111111 1222221111
Q ss_pred --hhhHHHHHhhccccCCCCchhc-ccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCC
Q 048561 210 --SSTLIEVLFLNNLLTGCLPYEL-GFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLV 286 (382)
Q Consensus 210 --~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 286 (382)
..++..+.+.++ +.......+ ..+++|+.+++++|.++.....+|.++.+|+.+++.+| ++.....+|..+.+|+
T Consensus 199 ~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 199 LQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp CCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 011111111111 000000111 23688899999988888666667888889999999887 7756677888888898
Q ss_pred -EEEcccccCcccCC-cccCCCCCCEEEccCCCCCCCCC
Q 048561 287 -NLSLSNNYFTGVGP-LCRKLIKNGVLDVNRNCIHYLPD 323 (382)
Q Consensus 287 -~L~L~~N~l~~~~~-~~~~l~~L~~L~L~~N~l~~lp~ 323 (382)
.+++.+ .++.+.+ .+..+++|+.+++++|.++.+++
T Consensus 277 ~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 277 GTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp EEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred EEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence 899988 7777654 67888899999998888888875
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=8.7e-14 Score=117.87 Aligned_cols=129 Identities=18% Similarity=0.229 Sum_probs=107.7
Q ss_pred CCcCceeeCCCCCC----CcccceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeec
Q 048561 50 CKYKGFYCGHPPDN----LTAIALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISN 125 (382)
Q Consensus 50 C~w~gv~c~~~~~~----~~~~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~ 125 (382)
|.|.++.|....-. .....++.|++++|++.+ ..+..|+++++|++|++++|.+++..+..++.+++|++|++++
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 78999999753211 113578999999999997 5667789999999999999999977667789999999999999
Q ss_pred CCCCccCcccccCCCCCcEEEecCCCCCCCCCccc-c-cCCCCEEeCCCCcCCCcCC
Q 048561 126 NKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQV-F-MQTLDVLFLNNNNFMQKLP 180 (382)
Q Consensus 126 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~-l~~L~~L~L~~n~l~~~~p 180 (382)
|.+++..+..+..+++|++|++++|.++ .+|... . +++|++|++++|.+.+..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999766667889999999999999999 555543 4 8999999999999876543
No 131
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.48 E-value=4.3e-16 Score=156.83 Aligned_cols=87 Identities=18% Similarity=0.090 Sum_probs=56.8
Q ss_pred cCcCCCccccC--C----ccCCCCC-----CcCCCCCCCCCEEeCcCCcCcccCchhhcC-CCCCCEEEcccccCcccCC
Q 048561 233 FLREARVFDAS--N----NRLTGPL-----PCSLGCLEKIERLNLSGNLLYGQVPEVLCA-LDNLVNLSLSNNYFTGVGP 300 (382)
Q Consensus 233 ~l~~L~~L~Ls--~----n~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~~ 300 (382)
.+++|+.|+++ + +.+++.. +..+..+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++...
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 46677777777 3 3444211 11134567788888876 555444445544 7889999999998876322
Q ss_pred -cc-cCCCCCCEEEccCCCCCC
Q 048561 301 -LC-RKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 301 -~~-~~l~~L~~L~L~~N~l~~ 320 (382)
.+ ..+++|+.|+|++|.+++
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCH
T ss_pred HHHHhcCCCcCEEECcCCCCcH
Confidence 22 568899999999998854
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.46 E-value=2.4e-14 Score=133.77 Aligned_cols=218 Identities=11% Similarity=0.102 Sum_probs=127.7
Q ss_pred CCCCCEEEcCCCcCc--ccCCcccCCCCCCCEEEeecCCCCccCcccccC--------CCCCcEEEecCCCCCCCCCccc
Q 048561 91 LPDLSLFHANSNKFS--GTISPKLAQLPYLYELDISNNKFSGTFPVAILG--------KNDLSFLDIRFNFFTGSVPPQV 160 (382)
Q Consensus 91 l~~L~~L~l~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~--------l~~L~~L~Ls~n~l~~~~p~~~ 160 (382)
+++|+.|+|++|.+. .... +.++.++.+.+..|.+. ...|.+ +++|+.|+|.. .++ .+++..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTT
T ss_pred hccCeEEecCcceeEEecCcc---ccccccccccccccccC---HHHhcccccccccccCCCcEEECCc-ccc-chhHHH
Confidence 667777777777766 2211 12223455555555433 345666 99999999998 777 676655
Q ss_pred c--cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCccccc---ccc-hhHHHhhhhHH-HHHhhccccCCCCchhc-
Q 048561 161 F--MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTG---SIP-RSIGKLSSTLI-EVLFLNNLLTGCLPYEL- 231 (382)
Q Consensus 161 ~--l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~---~lp-~~l~~l~~~L~-~L~l~~n~l~~~~~~~~- 231 (382)
+ +++|+.|++.+|.+....+.+|.. .++..+....+.... .+. ..+.+. ..|+ .+.+.. .+.++..+
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~-~~L~~~i~~~~---~~~l~~~~~ 195 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG-EPLETTIQVGA---MGKLEDEIM 195 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES-CCCEEEEEECT---TCCHHHHHH
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc-cccceeEEecC---CCcHHHHHh
Confidence 4 789999999999887666666665 334433332211100 000 000000 0000 000000 00011100
Q ss_pred ---ccCcCCCccccCCccCCCCCCcCC-CCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCC
Q 048561 232 ---GFLREARVFDASNNRLTGPLPCSL-GCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLI 306 (382)
Q Consensus 232 ---~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~ 306 (382)
....+++.+.+.++-.. .....+ ..+++|+.+++++|.++.....+|..+.+|+.++|.+| ++.+.. .+..+.
T Consensus 196 ~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~ 273 (329)
T 3sb4_A 196 KAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG 273 (329)
T ss_dssp HTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh
Confidence 12344555555443111 000111 13689999999999999666778999999999999998 877765 689999
Q ss_pred CCC-EEEccCCCCCCCCC
Q 048561 307 KNG-VLDVNRNCIHYLPD 323 (382)
Q Consensus 307 ~L~-~L~L~~N~l~~lp~ 323 (382)
+|+ .+++.+ .++.+++
T Consensus 274 ~L~~~l~l~~-~l~~I~~ 290 (329)
T 3sb4_A 274 RLAGTLELPA-SVTAIEF 290 (329)
T ss_dssp TCCEEEEECT-TCCEECT
T ss_pred hccEEEEEcc-cceEEch
Confidence 999 999988 7888764
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=8.5e-14 Score=117.91 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=30.8
Q ss_pred ccCcCCCccccCCccCCCCCCc--CCCCCCCCCEEeCcCCcCcccCchh----hcCCCCCCEEEcccccCc
Q 048561 232 GFLREARVFDASNNRLTGPLPC--SLGCLEKIERLNLSGNLLYGQVPEV----LCALDNLVNLSLSNNYFT 296 (382)
Q Consensus 232 ~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~ 296 (382)
..+++|++|++++|.++ .+|. .+..+++|+.|++++|.+. .+|.. +..+++|+.|++++|.+.
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 34445555555555554 2333 4445555555555555554 33332 444455555555555443
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=2.1e-16 Score=136.79 Aligned_cols=152 Identities=26% Similarity=0.334 Sum_probs=86.7
Q ss_pred CCCCCEEEcCCCcCcccCCc------ccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-cC
Q 048561 91 LPDLSLFHANSNKFSGTISP------KLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF-MQ 163 (382)
Q Consensus 91 l~~L~~L~l~~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-l~ 163 (382)
...++.++++.+.+.+.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+. ++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34444445555555544443 66666777777777777663 55 5666667777777777666 5555443 45
Q ss_pred CCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccC
Q 048561 164 TLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDAS 243 (382)
Q Consensus 164 ~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 243 (382)
+|++|++++|.+++ +| .+..+++|++|+++
T Consensus 94 ~L~~L~L~~N~l~~------------------------l~--------------------------~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 94 TLEELWISYNQIAS------------------------LS--------------------------GIEKLVNLRVLYMS 123 (198)
T ss_dssp HCSEEEEEEEECCC------------------------HH--------------------------HHHHHHHSSEEEES
T ss_pred cCCEEECcCCcCCc------------------------CC--------------------------ccccCCCCCEEECC
Confidence 66666666555431 11 12334456666666
Q ss_pred CccCCCCCC-cCCCCCCCCCEEeCcCCcCcccCch----------hhcCCCCCCEEEcccccCcc
Q 048561 244 NNRLTGPLP-CSLGCLEKIERLNLSGNLLYGQVPE----------VLCALDNLVNLSLSNNYFTG 297 (382)
Q Consensus 244 ~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~----------~~~~l~~L~~L~L~~N~l~~ 297 (382)
+|.+++..+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|| +|.++.
T Consensus 124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 666653211 2455666677777777766554433 256677777776 555543
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=6.2e-13 Score=127.42 Aligned_cols=228 Identities=11% Similarity=0.053 Sum_probs=164.4
Q ss_pred CCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCCCcccc-
Q 048561 83 TLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSVPPQVF- 161 (382)
Q Consensus 83 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~- 161 (382)
+...+|.+. +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .++..-...|.++.+|+.+++..|.++ .++...+
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~ 201 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV 201 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT
T ss_pred ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe
Confidence 345566664 7888888766 665556677774 688888875 566455567888888888888888887 6666555
Q ss_pred cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCcc
Q 048561 162 MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVF 240 (382)
Q Consensus 162 l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 240 (382)
..+|+.+.+..+ +......+|.. .+|+.+++..+ ++ .++...+.- .+|+.+.+. +.++..-...|.++++|+.+
T Consensus 202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEV 276 (401)
T ss_dssp TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEE
T ss_pred ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEE
Confidence 678888888754 55555556665 57888887764 33 333332222 456666663 44555567788999999999
Q ss_pred ccCCccCC-----CCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCCCEEEcc
Q 048561 241 DASNNRLT-----GPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKNGVLDVN 314 (382)
Q Consensus 241 ~Ls~n~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~L~ 314 (382)
++.+|.+. .....+|.++++|+.+++.+ .++.....+|..+.+|+.+.|..| ++.+.. .+..+ +|+.+++.
T Consensus 277 ~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp EEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred EeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence 99888764 34556788999999999994 577566778889999999999655 776654 67788 99999999
Q ss_pred CCCCCCCCC
Q 048561 315 RNCIHYLPD 323 (382)
Q Consensus 315 ~N~l~~lp~ 323 (382)
+|.+..+++
T Consensus 354 ~n~~~~l~~ 362 (401)
T 4fdw_A 354 GTTPPQVFE 362 (401)
T ss_dssp CSSCCBCCC
T ss_pred CCCCccccc
Confidence 998877764
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=1.4e-12 Score=109.83 Aligned_cols=104 Identities=18% Similarity=0.167 Sum_probs=83.9
Q ss_pred eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecC
Q 048561 70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF 149 (382)
Q Consensus 70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 149 (382)
+.++++++.+.. ++..+ .++|++|++++|.+++..|..|..+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 12 ~~l~~s~n~l~~--ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLAS--VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc--cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467778888876 33333 37899999999999988888899999999999999999966666678999999999999
Q ss_pred CCCCCCCCcccc-cCCCCEEeCCCCcCCC
Q 048561 150 NFFTGSVPPQVF-MQTLDVLFLNNNNFMQ 177 (382)
Q Consensus 150 n~l~~~~p~~~~-l~~L~~L~L~~n~l~~ 177 (382)
|++++..+..+. +++|++|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999944343344 8899999999998764
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=1.8e-13 Score=115.89 Aligned_cols=125 Identities=14% Similarity=0.167 Sum_probs=92.0
Q ss_pred ceeEEEcCCCCCCCCCCccccCCC-CCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEE
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQL-PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLD 146 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 146 (382)
.++.|++++|++.. ++. +..+ ++|++|++++|.+++. ..++.+++|++|++++|.+++..+..+..+++|++|+
T Consensus 20 ~L~~L~l~~n~l~~--i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 20 RDRELDLRGYKIPV--IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp SCEEEECTTSCCCS--CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CceEEEeeCCCCch--hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 68889999998886 344 4444 4899999999988854 5788888999999999998844334457888999999
Q ss_pred ecCCCCCCCCCc--ccc-cCCCCEEeCCCCcCCCcCCcC----CCC-CcchhhhccCcccc
Q 048561 147 IRFNFFTGSVPP--QVF-MQTLDVLFLNNNNFMQKLPQN----LGS-TPALYLTFANNKFT 199 (382)
Q Consensus 147 Ls~n~l~~~~p~--~~~-l~~L~~L~L~~n~l~~~~p~~----~~~-~~L~~L~l~~n~l~ 199 (382)
+++|.++ .+|. .+. +++|++|++++|.++. +|.. +.. .+|++|++++|.+.
T Consensus 95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999886 6665 333 7889999999888863 3432 333 56777777776544
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=4.4e-13 Score=113.36 Aligned_cols=104 Identities=18% Similarity=0.143 Sum_probs=84.8
Q ss_pred HhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCc
Q 048561 217 LFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFT 296 (382)
Q Consensus 217 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 296 (382)
++++|.+. .+|..+. ++|++|++++|.|++..|..|..+++|++|+|++|+|++..+..+..+++|++|+|++|+|+
T Consensus 18 ~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 18 NCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp ECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 34444443 3444332 78899999999999887888999999999999999999665666788999999999999999
Q ss_pred ccCCc-ccCCCCCCEEEccCCCCCCCCC
Q 048561 297 GVGPL-CRKLIKNGVLDVNRNCIHYLPD 323 (382)
Q Consensus 297 ~~~~~-~~~l~~L~~L~L~~N~l~~lp~ 323 (382)
++++. +..+++|+.|+|++|.+...+.
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred eeCHHHhccccCCCEEEeCCCCcccccc
Confidence 88774 8889999999999999998775
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=4.7e-16 Score=134.52 Aligned_cols=155 Identities=18% Similarity=0.153 Sum_probs=111.6
Q ss_pred cCCCCCCCEEEeecCCCCccCcc------cccCCCCCcEEEecCCCCCCCCCcccccCCCCEEeCCCCcCCCcCCcCCCC
Q 048561 112 LAQLPYLYELDISNNKFSGTFPV------AILGKNDLSFLDIRFNFFTGSVPPQVFMQTLDVLFLNNNNFMQKLPQNLGS 185 (382)
Q Consensus 112 l~~l~~L~~L~Ls~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 185 (382)
+.....++.++++.+.+.+.+|. .+..+++|++|++++|.++ .+|....+++|++|++++|.++
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~~~~~l~~L~~L~l~~n~l~--------- 83 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISSLSGMENLRILSLGRNLIK--------- 83 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCCCHHHHTTCCEEEEEEEEEC---------
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-cccccccCCCCCEEECCCCCcc---------
Confidence 34445666666666666665554 6777777788888777777 3562222677777777666543
Q ss_pred CcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEe
Q 048561 186 TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLN 265 (382)
Q Consensus 186 ~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 265 (382)
.+| ..+..+++|++|++++|.+++ +| .+..+++|++|+
T Consensus 84 ---------------~l~-------------------------~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 84 ---------------KIE-------------------------NLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp ---------------SCS-------------------------SHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred ---------------ccc-------------------------chhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 222 223344678999999999985 45 577889999999
Q ss_pred CcCCcCcccCc-hhhcCCCCCCEEEcccccCcccCCc-----------ccCCCCCCEEEccCCCCCC
Q 048561 266 LSGNLLYGQVP-EVLCALDNLVNLSLSNNYFTGVGPL-----------CRKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 266 L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~~l~~L~~L~L~~N~l~~ 320 (382)
+++|.+++..+ ..+..+++|++|++++|.+++.++. +..+++|+.|| +|.++.
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99999984332 4788999999999999999886543 78899999987 776665
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=1.3e-12 Score=125.10 Aligned_cols=235 Identities=14% Similarity=0.088 Sum_probs=117.5
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
.++.+.+..+ +.. +...+|.+ .+|+.+.+.. .++..-..+|.++++|+.+++.+|+++ .++.......+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~-I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKS-IGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCE-ECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccE-ECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEe
Confidence 3445555443 332 33344544 3466666654 444344455666666666666666665 33333333456666666
Q ss_pred cCCCCCCCCCcccc--cCCCCEEeCCCCcCCCcCCcCCCCCcchhhhccCcccccccc-hhHHHhhhhHHHHHhhccccC
Q 048561 148 RFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGSTPALYLTFANNKFTGSIP-RSIGKLSSTLIEVLFLNNLLT 224 (382)
Q Consensus 148 s~n~l~~~~p~~~~--l~~L~~L~L~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~lp-~~l~~l~~~L~~L~l~~n~l~ 224 (382)
..+ ++ .++...+ +.+|+.+.+..+ ++.....+|...+|+.+.+. +.+. .++ ..|.+. .+|+.+.+.+|.+.
T Consensus 211 p~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~-~I~~~aF~~c-~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 211 PVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVT-NIASRAFYYC-PELAEVTTYGSTFN 284 (401)
T ss_dssp CTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCC-EECTTTTTTC-TTCCEEEEESSCCC
T ss_pred CCc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCcc-EEChhHhhCC-CCCCEEEeCCcccc
Confidence 533 44 4444333 456666666543 33333444444555555552 2333 222 233333 55555555555443
Q ss_pred -----CCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccC
Q 048561 225 -----GCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVG 299 (382)
Q Consensus 225 -----~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 299 (382)
......|.++++|+.+.+.. .++.....+|.++.+|+.+.+..| ++.....+|..+ +|+.+++.+|.+..+.
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 23344556666666666653 344334455556666666666443 443444555555 6666666666555433
Q ss_pred C-cccCCC-CCCEEEccCC
Q 048561 300 P-LCRKLI-KNGVLDVNRN 316 (382)
Q Consensus 300 ~-~~~~l~-~L~~L~L~~N 316 (382)
. .+..++ +++.|.+..+
T Consensus 362 ~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 362 EKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CSSCCCSCTTCCEEEECGG
T ss_pred cccccCCCCCccEEEeCHH
Confidence 3 233342 4455555444
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=5.6e-13 Score=112.27 Aligned_cols=105 Identities=21% Similarity=0.183 Sum_probs=85.3
Q ss_pred HHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccC
Q 048561 216 VLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYF 295 (382)
Q Consensus 216 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 295 (382)
+++++|.++. +|..+ .++|++|++++|.|++..+..|..+++|++|++++|+|++..+..+..+++|++|+|++|+|
T Consensus 14 l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 14 VDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp EECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 3445555542 44333 37789999999999987788899999999999999999977677788899999999999999
Q ss_pred cccCC-cccCCCCCCEEEccCCCCCCCCC
Q 048561 296 TGVGP-LCRKLIKNGVLDVNRNCIHYLPD 323 (382)
Q Consensus 296 ~~~~~-~~~~l~~L~~L~L~~N~l~~lp~ 323 (382)
+++++ .+..+++|+.|+|++|.++..++
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 98877 47889999999999999987664
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=3e-12 Score=108.22 Aligned_cols=102 Identities=21% Similarity=0.246 Sum_probs=84.4
Q ss_pred eEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecC
Q 048561 70 ASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRF 149 (382)
Q Consensus 70 ~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 149 (382)
+.++++++++.. ++..+ .++|++|++++|.+++..|..|+.+++|++|+|++|+|++..+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~~--iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLAS--VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCc--cCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 578889998876 34333 38999999999999988888999999999999999999965555578899999999999
Q ss_pred CCCCCCCCcc-cc-cCCCCEEeCCCCcCC
Q 048561 150 NFFTGSVPPQ-VF-MQTLDVLFLNNNNFM 176 (382)
Q Consensus 150 n~l~~~~p~~-~~-l~~L~~L~L~~n~l~ 176 (382)
|+++ .+|.. +. +++|++|++++|.+.
T Consensus 91 N~l~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLK-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred Cccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence 9999 55554 44 889999999999875
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=2.8e-11 Score=113.52 Aligned_cols=96 Identities=21% Similarity=0.171 Sum_probs=81.1
Q ss_pred CCCCCCCccccCCCCCCCEEEcCC-CcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCCCCC
Q 048561 78 ELAAPTLDGFIDQLPDLSLFHANS-NKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFTGSV 156 (382)
Q Consensus 78 ~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 156 (382)
++.. +|. +..+++|++|+|++ |.+++..+..|+.+++|++|+|++|+|++..|..|.++++|++|+|++|+|+ .+
T Consensus 20 ~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~ 95 (347)
T 2ifg_A 20 ALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SL 95 (347)
T ss_dssp CCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CC
T ss_pred CCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-ee
Confidence 5555 455 88999999999996 9999877788999999999999999999888888999999999999999999 55
Q ss_pred Ccccc-cCCCCEEeCCCCcCCC
Q 048561 157 PPQVF-MQTLDVLFLNNNNFMQ 177 (382)
Q Consensus 157 p~~~~-l~~L~~L~L~~n~l~~ 177 (382)
|...+ ...|+.|+|.+|.+..
T Consensus 96 ~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 96 SWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CSTTTCSCCCCEEECCSSCCCC
T ss_pred CHHHcccCCceEEEeeCCCccC
Confidence 55443 4449999999998763
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=2.2e-11 Score=114.30 Aligned_cols=104 Identities=17% Similarity=0.056 Sum_probs=83.0
Q ss_pred hhcc-ccCCCCchhcccCcCCCccccCC-ccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccC
Q 048561 218 FLNN-LLTGCLPYELGFLREARVFDASN-NRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYF 295 (382)
Q Consensus 218 l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 295 (382)
++++ .++ .+|. +..+++|+.|+|++ |.|++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|
T Consensus 15 ~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 15 CTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp CCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred cCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 3444 455 3566 78888899999986 899877777888999999999999999988888888999999999999999
Q ss_pred cccCCcccCCCCCCEEEccCCCCCCCCC
Q 048561 296 TGVGPLCRKLIKNGVLDVNRNCIHYLPD 323 (382)
Q Consensus 296 ~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 323 (382)
+++++.......|+.|+|.+|.|+...+
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred ceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 9887754333349999999999887543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=3.4e-13 Score=127.96 Aligned_cols=162 Identities=15% Similarity=0.079 Sum_probs=84.2
Q ss_pred CCCCEEEeecCCCCccCcccc----c-CCCCCcEEEecCCCCCCCCCcccc--cCCCCEEeCCCCcCCCcCCcCC-----
Q 048561 116 PYLYELDISNNKFSGTFPVAI----L-GKNDLSFLDIRFNFFTGSVPPQVF--MQTLDVLFLNNNNFMQKLPQNL----- 183 (382)
Q Consensus 116 ~~L~~L~Ls~n~l~~~~p~~l----~-~l~~L~~L~Ls~n~l~~~~p~~~~--l~~L~~L~L~~n~l~~~~p~~~----- 183 (382)
+.|++|+|++|.++......+ . ...+|++|+|++|.++......+. +.+|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666653222222 2 124666666666666532222221 4566666666666543222211
Q ss_pred -CCCcchhhhccCcccccccchhHHHhhhhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCC----CCcCCCCC
Q 048561 184 -GSTPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGP----LPCSLGCL 258 (382)
Q Consensus 184 -~~~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l 258 (382)
....|++|++++|.++..-... +...+...++|++|+|++|.|++. +...+...
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~---------------------l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAV---------------------LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN 210 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHH---------------------HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred hcCCccceeeCCCCCCChHHHHH---------------------HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence 1133445555555443110000 112334556677777777776532 23344555
Q ss_pred CCCCEEeCcCCcCccc----CchhhcCCCCCCEEEcccccCccc
Q 048561 259 EKIERLNLSGNLLYGQ----VPEVLCALDNLVNLSLSNNYFTGV 298 (382)
Q Consensus 259 ~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~ 298 (382)
++|++|+|++|.|+.. +...+...++|++|+|++|.|+..
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 6777777777777642 233444557777777777777653
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=3e-13 Score=128.40 Aligned_cols=161 Identities=18% Similarity=0.045 Sum_probs=109.0
Q ss_pred CCCCcEEEecCCCCCCCCCcccc------cCCCCEEeCCCCcCCCcCCcCCCC--CcchhhhccCcccccccchhHHHhh
Q 048561 139 KNDLSFLDIRFNFFTGSVPPQVF------MQTLDVLFLNNNNFMQKLPQNLGS--TPALYLTFANNKFTGSIPRSIGKLS 210 (382)
Q Consensus 139 l~~L~~L~Ls~n~l~~~~p~~~~------l~~L~~L~L~~n~l~~~~p~~~~~--~~L~~L~l~~n~l~~~lp~~l~~l~ 210 (382)
++.|++|+|++|.++......+. ..+|++|+|++|.++......+.. .++++|++++|.++..-...+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~-- 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD-- 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH--
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH--
Confidence 36788899998888743222222 157888888888775432222222 35666666666655221111111
Q ss_pred hhHHHHHhhccccCCCCchhc-ccCcCCCccccCCccCCCC----CCcCCCCCCCCCEEeCcCCcCccc----CchhhcC
Q 048561 211 STLIEVLFLNNLLTGCLPYEL-GFLREARVFDASNNRLTGP----LPCSLGCLEKIERLNLSGNLLYGQ----VPEVLCA 281 (382)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~ 281 (382)
.+ ...++|+.|+|++|.|+.. ++..+...++|++|+|++|.|... +...+..
T Consensus 149 -------------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~ 209 (372)
T 3un9_A 149 -------------------LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR 209 (372)
T ss_dssp -------------------HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG
T ss_pred -------------------HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc
Confidence 11 2356899999999998742 334446778999999999999853 3456677
Q ss_pred CCCCCEEEcccccCcccC-----CcccCCCCCCEEEccCCCCCC
Q 048561 282 LDNLVNLSLSNNYFTGVG-----PLCRKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 282 l~~L~~L~L~~N~l~~~~-----~~~~~l~~L~~L~L~~N~l~~ 320 (382)
.++|++|+|++|.|+... ..+...++|+.|+|++|.|+.
T Consensus 210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 889999999999998642 235567899999999999876
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=2.7e-09 Score=100.55 Aligned_cols=101 Identities=18% Similarity=0.207 Sum_probs=60.4
Q ss_pred ceeEEEcCCCCCCCCCC-------ccccCCCCCCCEEEcCCCcCc---------ccCCcccCCCCCCCEEEeecCCCCcc
Q 048561 68 ALASIDFNGFELAAPTL-------DGFIDQLPDLSLFHANSNKFS---------GTISPKLAQLPYLYELDISNNKFSGT 131 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~l~~~ 131 (382)
.++.|.+......+... ...+..+++|+.|.+...... +.+...+..+++|+.|+|++|.-. .
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~ 186 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-S 186 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-B
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-e
Confidence 56777777554432111 222446788888888654321 123344566788999999887311 2
Q ss_pred CcccccCCCCCcEEEecCCCCCCCCCccc---ccCCCCEEeCC
Q 048561 132 FPVAILGKNDLSFLDIRFNFFTGSVPPQV---FMQTLDVLFLN 171 (382)
Q Consensus 132 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~---~l~~L~~L~L~ 171 (382)
++. + .+++|++|+|..+.+.......+ .+++|++|+|+
T Consensus 187 l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 187 IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 333 3 37889999988887653322222 26788888875
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=1.6e-08 Score=95.28 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=38.6
Q ss_pred CCCCCCEEeCcCCcCcccCchhhc---CCCCCCEEEcccccCccc-----CCcccCCCCCCEEEccCCCCCC
Q 048561 257 CLEKIERLNLSGNLLYGQVPEVLC---ALDNLVNLSLSNNYFTGV-----GPLCRKLIKNGVLDVNRNCIHY 320 (382)
Q Consensus 257 ~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~-----~~~~~~l~~L~~L~L~~N~l~~ 320 (382)
.+++|+.|++.+|.+.+..+..+. .+++|++|+|+.|.+++. ...+..+++|+.|+|++|.|+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 356777777777776543322222 356777777777777652 1223456677777777776554
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.54 E-value=1.8e-07 Score=89.17 Aligned_cols=83 Identities=6% Similarity=-0.015 Sum_probs=51.3
Q ss_pred hcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCCC
Q 048561 230 ELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIKN 308 (382)
Q Consensus 230 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L 308 (382)
.|..+.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++..-..+|.++.+|+.+++..+ ++.+.. .+..+.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 4556666777666544 43333455666777777777543 55344566777777777777655 555443 56677777
Q ss_pred CEEEccC
Q 048561 309 GVLDVNR 315 (382)
Q Consensus 309 ~~L~L~~ 315 (382)
+.+++..
T Consensus 369 ~~i~lp~ 375 (394)
T 4fs7_A 369 KKVELPK 375 (394)
T ss_dssp CEEEEEG
T ss_pred CEEEECC
Confidence 7777653
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.45 E-value=7.9e-07 Score=84.64 Aligned_cols=91 Identities=5% Similarity=0.033 Sum_probs=56.2
Q ss_pred hhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCCC
Q 048561 229 YELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLIK 307 (382)
Q Consensus 229 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~ 307 (382)
.+|.++.+|+.+.+..+..+ ....+|.++..|+.+.+. +.++.....+|..+.+|+.+++..+ ++.+.. .+..+.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 45666777777777655433 344556667777777775 3444344556677777777777643 555443 5667777
Q ss_pred CCEEEccCCCCCCCCC
Q 048561 308 NGVLDVNRNCIHYLPD 323 (382)
Q Consensus 308 L~~L~L~~N~l~~lp~ 323 (382)
|+.+.+..+ ++.+.+
T Consensus 336 L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPE 350 (394)
T ss_dssp CCEEEECTT-CCBCCG
T ss_pred CCEEEECcc-cCEEhH
Confidence 777777533 665553
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.42 E-value=6.8e-07 Score=85.08 Aligned_cols=215 Identities=11% Similarity=0.009 Sum_probs=122.4
Q ss_pred cccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCC------------
Q 048561 86 GFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFT------------ 153 (382)
Q Consensus 86 ~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~------------ 153 (382)
.+|.++.+|+.+.+.++. ......+|.++.+|+.+++..+ ++..-...+.++..|+.+.+..+...
T Consensus 156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~ 233 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVK 233 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCC
T ss_pred hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCc
Confidence 456667777777776543 2244455666677777766554 33222334445555555554433221
Q ss_pred --------CCCCcccc--cCCCCEEeCCCCcCCCcCCcCCCC-CcchhhhccCcccccccchhHHHhhhhHHHHHhhccc
Q 048561 154 --------GSVPPQVF--MQTLDVLFLNNNNFMQKLPQNLGS-TPALYLTFANNKFTGSIPRSIGKLSSTLIEVLFLNNL 222 (382)
Q Consensus 154 --------~~~p~~~~--l~~L~~L~L~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~lp~~l~~l~~~L~~L~l~~n~ 222 (382)
..+....+ +..|+.+.+..+.. ......+.. ..++.+....+. ++...+....+|+.+.+.++
T Consensus 234 ~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~- 307 (394)
T 4fs7_A 234 NIIIPDSFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS- 307 (394)
T ss_dssp EEEECTTCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-
T ss_pred eEEECCCceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCcee----eccccccccccccccccccc-
Confidence 01211111 34455555544322 122222222 233333332221 22222212245666555443
Q ss_pred cCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCCcc
Q 048561 223 LTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGPLC 302 (382)
Q Consensus 223 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~ 302 (382)
+...-..+|.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++..-..+|.++.+|+.+++..+ ++.....+
T Consensus 308 i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F 384 (394)
T 4fs7_A 308 VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDF 384 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGB
T ss_pred cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhhee
Confidence 44445667899999999999754 66455678999999999999877 66566778999999999999765 34333467
Q ss_pred cCCCCCCEE
Q 048561 303 RKLIKNGVL 311 (382)
Q Consensus 303 ~~l~~L~~L 311 (382)
.++.+|+.+
T Consensus 385 ~~c~~L~~I 393 (394)
T 4fs7_A 385 EDTTKFKWI 393 (394)
T ss_dssp CTTCEEEEE
T ss_pred cCCCCCcEE
Confidence 777777654
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=6.3e-08 Score=86.87 Aligned_cols=63 Identities=29% Similarity=0.302 Sum_probs=30.2
Q ss_pred cCcCCCccccCCccCCC--CCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCC--CCCEEEcccccCcc
Q 048561 233 FLREARVFDASNNRLTG--PLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALD--NLVNLSLSNNYFTG 297 (382)
Q Consensus 233 ~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~ 297 (382)
.+++|+.|+|++|.|++ .++..+..+++|+.|+|++|.|++. ..+..+. +|++|+|++|.+++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 34555555555555554 2223333455555555555555532 1122222 55555555555554
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.33 E-value=1.2e-06 Score=83.32 Aligned_cols=103 Identities=7% Similarity=0.073 Sum_probs=73.5
Q ss_pred hhHHHHHhhccccCCCCchhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEc
Q 048561 211 STLIEVLFLNNLLTGCLPYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSL 290 (382)
Q Consensus 211 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 290 (382)
..|+.+.+.++.. ..-...|.++.+|+.+.+. +.++.....+|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+
T Consensus 265 ~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 265 AYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 3444444433322 2344567888999999986 3455445567888999999999865 55455678889999999999
Q ss_pred ccccCcccCC-cccCCCCCCEEEccCCC
Q 048561 291 SNNYFTGVGP-LCRKLIKNGVLDVNRNC 317 (382)
Q Consensus 291 ~~N~l~~~~~-~~~~l~~L~~L~L~~N~ 317 (382)
..+ ++.+.. .+.++.+|+.+++.+|.
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 654 666654 68889999999988763
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=7.1e-07 Score=79.97 Aligned_cols=66 Identities=20% Similarity=0.333 Sum_probs=34.3
Q ss_pred CCCCCCEEEeecCCCCc--cCcccccCCCCCcEEEecCCCCCCCCCcccccC--CCCEEeCCCCcCCCcCC
Q 048561 114 QLPYLYELDISNNKFSG--TFPVAILGKNDLSFLDIRFNFFTGSVPPQVFMQ--TLDVLFLNNNNFMQKLP 180 (382)
Q Consensus 114 ~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~l~--~L~~L~L~~n~l~~~~p 180 (382)
++++|+.|+|++|+|++ .++..+..+++|++|+|++|.|++ +.....+. +|++|+|++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GGGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-chhhhhcccCCcceEEccCCcCccccC
Confidence 45566666666666654 233444455666666666666653 22111122 56666666666554433
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.24 E-value=1.6e-07 Score=79.72 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=28.9
Q ss_pred cCCCCCCCEEEcCCC-cCcc----cCCcccCCCCCCCEEEeecCCCCcc----CcccccCCCCCcEEEecCCCCC
Q 048561 88 IDQLPDLSLFHANSN-KFSG----TISPKLAQLPYLYELDISNNKFSGT----FPVAILGKNDLSFLDIRFNFFT 153 (382)
Q Consensus 88 ~~~l~~L~~L~l~~n-~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~ 153 (382)
+...+.|++|+|++| .+.. .+...+...++|++|+|++|.+... +...+...+.|++|+|++|.|.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 334445555555554 4432 1223334444555555555555421 1222333344555555555544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.20 E-value=1.1e-07 Score=80.74 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=81.1
Q ss_pred cceeEEEcCCC-CCCCC---CCccccCCCCCCCEEEcCCCcCccc----CCcccCCCCCCCEEEeecCCCCcc----Ccc
Q 048561 67 IALASIDFNGF-ELAAP---TLDGFIDQLPDLSLFHANSNKFSGT----ISPKLAQLPYLYELDISNNKFSGT----FPV 134 (382)
Q Consensus 67 ~~l~~L~L~~~-~l~~~---~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~ 134 (382)
..++.|+|++| .+... .+...+...++|++|+|++|.+... +...+...+.|++|+|++|.|+.. +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 36899999999 87652 1334466778999999999998743 344555668899999999999843 456
Q ss_pred cccCCCCCcEEEe--cCCCCCCCCCcccc-----cCCCCEEeCCCCcCC
Q 048561 135 AILGKNDLSFLDI--RFNFFTGSVPPQVF-----MQTLDVLFLNNNNFM 176 (382)
Q Consensus 135 ~l~~l~~L~~L~L--s~n~l~~~~p~~~~-----l~~L~~L~L~~n~l~ 176 (382)
.+...+.|++|+| ++|.+.......+. .++|++|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6777889999999 88998743222221 477888888888653
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.96 E-value=3.5e-05 Score=72.65 Aligned_cols=92 Identities=11% Similarity=0.084 Sum_probs=55.6
Q ss_pred chhcccCcCCCccccCCccCCCCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcccCC-cccCCC
Q 048561 228 PYELGFLREARVFDASNNRLTGPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTGVGP-LCRKLI 306 (382)
Q Consensus 228 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~ 306 (382)
...+.++..|+.+.+..+ ++..-..+|..+.+|+.+.+..+ +......+|..+.+|+.+.+.++.++.+.. .+.++.
T Consensus 233 ~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~ 310 (379)
T 4h09_A 233 DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV 310 (379)
T ss_dssp TTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred cccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence 345566677777777654 33233455666667777776543 443444566667777777777766666544 566667
Q ss_pred CCCEEEccCCCCCCCC
Q 048561 307 KNGVLDVNRNCIHYLP 322 (382)
Q Consensus 307 ~L~~L~L~~N~l~~lp 322 (382)
+|+.+.|..+ ++.+.
T Consensus 311 ~L~~i~lp~~-l~~I~ 325 (379)
T 4h09_A 311 KLSSVTLPTA-LKTIQ 325 (379)
T ss_dssp TCCEEECCTT-CCEEC
T ss_pred CCCEEEcCcc-ccEEH
Confidence 7777776533 55444
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.90 E-value=9.6e-05 Score=69.58 Aligned_cols=96 Identities=9% Similarity=0.114 Sum_probs=51.1
Q ss_pred ceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEe
Q 048561 68 ALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDI 147 (382)
Q Consensus 68 ~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 147 (382)
+++.+.+.. .++. +-..+|.++.+|+.+++..+ ++..-..+|.++ +|+.+.+..+ ++ .+........+|+.+.+
T Consensus 47 ~i~~v~ip~-~vt~-Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~~L~~i~l 120 (379)
T 4h09_A 47 RISEVRVNS-GITS-IGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGTDLDDFEF 120 (379)
T ss_dssp GCSEEEECT-TEEE-ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTCCCSEEEC
T ss_pred CCEEEEeCC-CccC-hHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccCCcccccC
Confidence 455555543 2332 34556777888888887644 554555567666 5777666543 44 33332223346787777
Q ss_pred cCCCCCCCCCcccc-cCCCCEEeCC
Q 048561 148 RFNFFTGSVPPQVF-MQTLDVLFLN 171 (382)
Q Consensus 148 s~n~l~~~~p~~~~-l~~L~~L~L~ 171 (382)
..+- + .+....+ ..+|+.+.+-
T Consensus 121 p~~~-~-~i~~~~F~~~~l~~~~~~ 143 (379)
T 4h09_A 121 PGAT-T-EIGNYIFYNSSVKRIVIP 143 (379)
T ss_dssp CTTC-C-EECTTTTTTCCCCEEEEC
T ss_pred CCcc-c-cccccccccceeeeeecc
Confidence 6543 2 2333332 3345554443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.75 E-value=1.2e-05 Score=67.16 Aligned_cols=84 Identities=14% Similarity=0.126 Sum_probs=44.6
Q ss_pred cceeEEEcCCCCCCCCCCccccCCCCCCCEEEcCCCc-CcccCCcccCCC----CCCCEEEeecCC-CCccCcccccCCC
Q 048561 67 IALASIDFNGFELAAPTLDGFIDQLPDLSLFHANSNK-FSGTISPKLAQL----PYLYELDISNNK-FSGTFPVAILGKN 140 (382)
Q Consensus 67 ~~l~~L~L~~~~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~ 140 (382)
..|+.||++++.++...+. .+.++++|+.|+|++|. ++..--..++.+ ++|++|+|++|. ++..--..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3567777776666553222 24566666666666663 443322334433 246666666653 5532223345566
Q ss_pred CCcEEEecCCC
Q 048561 141 DLSFLDIRFNF 151 (382)
Q Consensus 141 ~L~~L~Ls~n~ 151 (382)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 66666666654
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.65 E-value=1.6e-05 Score=66.28 Aligned_cols=83 Identities=11% Similarity=0.072 Sum_probs=57.6
Q ss_pred CCCCEEEcCCCcCcccCCcccCCCCCCCEEEeecCC-CCccCcccccCC----CCCcEEEecCCC-CCCCCCccc-ccCC
Q 048561 92 PDLSLFHANSNKFSGTISPKLAQLPYLYELDISNNK-FSGTFPVAILGK----NDLSFLDIRFNF-FTGSVPPQV-FMQT 164 (382)
Q Consensus 92 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~p~~~-~l~~ 164 (382)
.+|+.||++++.++..--..+..+++|++|+|++|. ++..--..+..+ ++|++|+|++|. ++..--..+ .+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 478899999988876555667888999999999885 664333345554 368999998875 552211112 2688
Q ss_pred CCEEeCCCCc
Q 048561 165 LDVLFLNNNN 174 (382)
Q Consensus 165 L~~L~L~~n~ 174 (382)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888774
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.76 E-value=0.0026 Score=50.19 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=19.3
Q ss_pred CCCEEEeecCCCCccCcccccCCCCCcEEEecCCCCC
Q 048561 117 YLYELDISNNKFSGTFPVAILGKNDLSFLDIRFNFFT 153 (382)
Q Consensus 117 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 153 (382)
+|++|+|++|+|+..-+..|..+++|++|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555555555333334445555555555555544
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.58 E-value=0.0037 Score=49.22 Aligned_cols=57 Identities=30% Similarity=0.360 Sum_probs=34.1
Q ss_pred ccccCCccCC-CCCCcCCCCCCCCCEEeCcCCcCcccCchhhcCCCCCCEEEcccccCcc
Q 048561 239 VFDASNNRLT-GPLPCSLGCLEKIERLNLSGNLLYGQVPEVLCALDNLVNLSLSNNYFTG 297 (382)
Q Consensus 239 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 297 (382)
.++-+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4555666664 23444332 356777777777774444556666677777777776543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.51 E-value=0.0006 Score=57.83 Aligned_cols=64 Identities=19% Similarity=0.237 Sum_probs=28.5
Q ss_pred CCCCCCEEEcCCC-cCcc----cCCcccCCCCCCCEEEeecCCCCcc----CcccccCCCCCcEEEecCCCCC
Q 048561 90 QLPDLSLFHANSN-KFSG----TISPKLAQLPYLYELDISNNKFSGT----FPVAILGKNDLSFLDIRFNFFT 153 (382)
Q Consensus 90 ~l~~L~~L~l~~n-~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~ 153 (382)
+-+.|+.|+|++| .|.. .+.+++..-..|+.|+|++|.|... +...+..-+.|++|+|+.|.|.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3344555555543 3331 1223344444555555555555421 2222233345555555555554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.41 E-value=0.00073 Score=57.28 Aligned_cols=83 Identities=13% Similarity=0.104 Sum_probs=42.4
Q ss_pred CcCCCccccCCc-cCCCC----CCcCCCCCCCCCEEeCcCCcCccc----CchhhcCCCCCCEEEcccccCcccC-----
Q 048561 234 LREARVFDASNN-RLTGP----LPCSLGCLEKIERLNLSGNLLYGQ----VPEVLCALDNLVNLSLSNNYFTGVG----- 299 (382)
Q Consensus 234 l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----- 299 (382)
-+.|+.|+|++| .|... +...+..-+.|+.|+|++|.|... +...+.....|++|+|+.|.|....
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 345666666654 44421 223334445666666666666532 2233334456666666666665421
Q ss_pred CcccCCCCCCEEEccCC
Q 048561 300 PLCRKLIKNGVLDVNRN 316 (382)
Q Consensus 300 ~~~~~l~~L~~L~L~~N 316 (382)
..+..-..|+.|+|++|
T Consensus 120 ~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTTTCCCSEEECCCC
T ss_pred HHHhhCCceeEEECCCC
Confidence 12444455666666654
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.20 E-value=43 Score=24.21 Aligned_cols=41 Identities=7% Similarity=-0.024 Sum_probs=26.9
Q ss_pred CccccCCCCCCCEEEcCCCcCcccCCcccCCCCCCCEEEeec
Q 048561 84 LDGFIDQLPDLSLFHANSNKFSGTISPKLAQLPYLYELDISN 125 (382)
Q Consensus 84 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~Ls~ 125 (382)
-..+|.++..|+.+.+..+ ++..-..+|.++.+|+.+.+..
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 4456777777777777654 4434455677777777777765
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.17 E-value=50 Score=23.82 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=33.9
Q ss_pred CcCcccCCcccCCCCCCCEEEeecCCCCccCcccccCCCCCcEEEecCC
Q 048561 102 NKFSGTISPKLAQLPYLYELDISNNKFSGTFPVAILGKNDLSFLDIRFN 150 (382)
Q Consensus 102 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 150 (382)
..++..-..+|.++.+|+.+.+-.+ ++..-...|.++.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455555667888888988888764 44344557888888888888754
Done!