BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048562
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 143/465 (30%), Positives = 223/465 (47%), Gaps = 86/465 (18%)
Query: 1 MDSKSSPVEMFFFPYVGGGHQIPMVDIA-RIFAAHGAKSTIITSPKHALSFQKSINRNQQ 59
M+ +P + P G GH IP+V+ A R+ HG T + + + S R
Sbjct: 1 MEESKTP-HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPS---KAQRTVL 56
Query: 60 SGLPITIKTLHLPDDIEIPDTDMSATPRTDTSM----------LQEPLKSLLVDSR-PDC 108
LP +I ++ LP + TD+S++ R ++ + L++ S + R P
Sbjct: 57 DSLPSSISSVFLP---PVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTA 113
Query: 109 IVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDY----EPFVV 164
+V D+F + DV ++P +F ++ K E VS ++ EP ++
Sbjct: 114 LVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLD--ETVSCEFRELTEPLML 171
Query: 165 PGL------------PDKIE-----LTALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDL 207
PG D+ + L + R++E GI+VN+F++LEP ++ Q+
Sbjct: 172 PGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAE-GILVNTFFELEPNAIKAL-QEP 229
Query: 208 GNDK--AWFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARL 265
G DK + VGP+ NI K E Q +E + L +LD++ SVLY+SFGS L
Sbjct: 230 GLDKPPVYPVGPLV----NI-GKQEAKQ---TEESECLKWLDNQPLGSVLYVSFGSGGTL 281
Query: 266 SPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEEN-------------WLPSGF 312
+ EQL E+A GL S F+WV+ R +GI + +LP GF
Sbjct: 282 TCEQLNELALGLADSEQRFLWVI---------RSPSGIANSSYFDSHSQTDPLTFLPPGF 332
Query: 313 EERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQF 372
ER KRG +I WAPQ +L H + GGF+THCGWNSTLESV +G+P++ WP+ AEQ
Sbjct: 333 LERT--KKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQK 390
Query: 373 SNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLM 417
N L+S+ ++ ++ + + V R++V VK LM
Sbjct: 391 MNAVLLSEDIRAALRPRAGD--------DGLVRREEVARVVKGLM 427
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 138/483 (28%), Positives = 217/483 (44%), Gaps = 65/483 (13%)
Query: 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKS--TIITSPKHALSFQKSINRNQQSGLPITI 66
E+ F P G GH ++ A++ H T+ + F S ++ + P I
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP-QI 69
Query: 67 KTLHLPDDIEIPDTDMSATPRTDTSMLQEPL--------KSLLVDSRPDCIVHDMFHHWS 118
+ + LP+ +E P ++ +P E L K++L ++ +V D F
Sbjct: 70 QLIDLPE-VEPPPQELLKSPEFYILTFLESLIPHVKATIKTIL-SNKVVGLVLDFFCVSM 127
Query: 119 ADVINSMNIPRIVF-NGNCCFSRCIL--ENVRKYKPHEKVSSDYEPFVVPG--------- 166
DV N IP +F N F +L +N + + + D++ +PG
Sbjct: 128 IDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQVPSNV 187
Query: 167 LPDK--------IELTALSFRFEEKSFGIVVNSFYDLEPAYVE-YFKQDLGNDKAWFVGP 217
LPD I L+ RF + GI+VN+F DLE + ++ + D + VGP
Sbjct: 188 LPDACFNKDGGYIAYYKLAERFRDTK-GIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGP 246
Query: 218 VSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLA-RLSPEQLLEIAYG 276
+ K ++ Q IL +LD + SV+++ FGS+ P Q+ EIA G
Sbjct: 247 LLDLKGQPNPKLDQAQHD-----LILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALG 301
Query: 277 LEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILE 336
L+ S F+W N E+ P GF E M +G+I GWAPQ+ +L
Sbjct: 302 LKHSGVRFLW-------------SNSAEKKVFPEGFLEWMELEGKGMIC-GWAPQVEVLA 347
Query: 337 HTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVG-SVNWVS 395
H A+GGF++HCGWNS LES+ GVP++TWPI AEQ N + V + GV +G V++
Sbjct: 348 HKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRL--VKEWGVGLGLRVDY-- 403
Query: 396 WSTEPSAAVGRDKVEVAVKRLMGTXXXXXXXXXXXXXXXXKAKNAVEEGGSSFIDAEALL 455
+ S V +++E +K LM ++NAV +GGSS I L+
Sbjct: 404 --RKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEM---SRNAVVDGGSSLISVGKLI 458
Query: 456 QEL 458
++
Sbjct: 459 DDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 138/483 (28%), Positives = 217/483 (44%), Gaps = 65/483 (13%)
Query: 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKS--TIITSPKHALSFQKSINRNQQSGLPITI 66
E+ F P G GH ++ A++ H T+ + F S ++ + P I
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQP-QI 69
Query: 67 KTLHLPDDIEIPDTDMSATPRTDTSMLQEPL--------KSLLVDSRPDCIVHDMFHHWS 118
+ + LP+ +E P ++ +P E L K++L ++ +V D F
Sbjct: 70 QLIDLPE-VEPPPQELLKSPEFYILTFLESLIPHVKATIKTIL-SNKVVGLVLDFFCVSM 127
Query: 119 ADVINSMNIPRIVF-NGNCCFSRCIL--ENVRKYKPHEKVSSDYEPFVVPG--------- 166
DV N IP +F N F +L +N + + + D++ +PG
Sbjct: 128 IDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQVPSNV 187
Query: 167 LPDK--------IELTALSFRFEEKSFGIVVNSFYDLEPAYVE-YFKQDLGNDKAWFVGP 217
LPD I L+ RF + GI+VN+F DLE + ++ + D + VGP
Sbjct: 188 LPDACFNKDGGYIAYYKLAERFRDTK-GIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGP 246
Query: 218 VSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLA-RLSPEQLLEIAYG 276
+ K ++ Q IL +LD + SV+++ FGS+ P Q+ EIA G
Sbjct: 247 LLDLKGQPNPKLDQAQHD-----LILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALG 301
Query: 277 LEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILE 336
L+ S F+W N E+ P GF E M +G+I GWAPQ+ +L
Sbjct: 302 LKHSGVRFLW-------------SNSAEKKVFPEGFLEWMELEGKGMIC-GWAPQVEVLA 347
Query: 337 HTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVG-SVNWVS 395
H A+GGF++HCGWNS LES+ GVP++TWPI AEQ N + V + GV +G V++
Sbjct: 348 HKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRL--VKEWGVGLGLRVDY-- 403
Query: 396 WSTEPSAAVGRDKVEVAVKRLMGTXXXXXXXXXXXXXXXXKAKNAVEEGGSSFIDAEALL 455
+ S V +++E +K LM ++NAV +GGSS I L+
Sbjct: 404 --RKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEM---SRNAVVDGGSSLISVGKLI 458
Query: 456 QEL 458
++
Sbjct: 459 DDI 461
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 119/215 (55%), Gaps = 24/215 (11%)
Query: 183 KSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPV-SLCNRNIEDKAERGQKTSID--- 238
K I++N+F +LE + + + + +GP+ SL ++ + Q S+D
Sbjct: 225 KDTTILLNTFNELESDVINALSSTIPS--IYPIGPLPSL----LKQTPQIHQLDSLDSNL 278
Query: 239 ---EGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSP 295
+ + L +L+SKE SV+Y++FGS ++PEQLLE A+GL SF+W++
Sbjct: 279 WKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIG 338
Query: 296 GTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLES 355
G+ S F + + RGLI W PQ +L H ++GGF+THCGWNST ES
Sbjct: 339 GSVI--------FSSEFTNEIAD--RGLI-ASWCPQDKVLNHPSIGGFLTHCGWNSTTES 387
Query: 356 VSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGS 390
+ AGVPM+ WP A+Q ++ + I + +IG+++ +
Sbjct: 388 ICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDT 422
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 160/375 (42%), Gaps = 62/375 (16%)
Query: 108 CIVHDMFHHWSADVINSMN---IPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVV 164
C+V D F + AD+ M+ +P + + + +R+ ++V V+
Sbjct: 120 CLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVL 179
Query: 165 PGLPDK---------IELTALSFRFEEKSFG--------IVVNSFYDLEPAYVEYFKQDL 207
PG P+ I+ + F G + +NSF + P + +L
Sbjct: 180 PGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHP----LIENEL 235
Query: 208 GNDKAWF--VGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARL 265
+ VGP +L Q+ DE L +LD E +SV+YISFGS+
Sbjct: 236 NSKFKLLLNVGPFNLTTP---------QRKVSDEHGCLEWLDQHENSSVVYISFGSVVTP 286
Query: 266 SPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLII 325
P +L +A LE FIW G KE LP GF ER +G I+
Sbjct: 287 PPHELTALAESLEECGFPFIWSFR------GDPKEK------LPKGFLERT--KTKGKIV 332
Query: 326 RGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIG 385
WAPQ+ IL+H++VG F+TH GWNS LE + GVPM++ P +Q N L VL+IG
Sbjct: 333 -AWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIG 391
Query: 386 VKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTXXXXXXXXXXXXXXXXKAKNAVEEGG 445
V V + + ++ ++ A++ M + K AVE+ G
Sbjct: 392 VGVD-----------NGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFK-AVEQNG 439
Query: 446 SSFIDAEALLQELKS 460
+S +D L+Q + S
Sbjct: 440 TSAMDFTTLIQIVTS 454
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/385 (25%), Positives = 167/385 (43%), Gaps = 59/385 (15%)
Query: 34 HGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIE-------IPDTDMSATP 86
H S TS +A F S++ Q IK+ + D + P D+
Sbjct: 37 HAVFSFFSTSQSNASIFHDSMHTMQ-----CNIKSYDISDGVPEGYVFAGRPQEDIELFT 91
Query: 87 RTDTSMLQEPLKSLLVDS-RP-DCIVHDMFHHWSADVINSMNIPRIVF---NGNCCFSRC 141
R ++ + + ++ RP C+V D F ++AD+ M + + F N +
Sbjct: 92 RAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHV 151
Query: 142 ILENVRKYKPHEKVSSDYEPFV--VPGLPDKIELTALSFRFEEKSFGIVVNSFYDLEPAY 199
++ +R+ + + + +PG+ RF + GIV + L
Sbjct: 152 YIDEIREKIGVSGIQGREDELLNFIPGMS--------KVRFRDLQEGIVFGNLNSLFSRM 203
Query: 200 VEYFKQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKI---------------LS 244
+ Q L A F+ + ++ + + KT ++ G L
Sbjct: 204 LHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKTYLNIGPFNLITPPPVVPNTTGCLQ 263
Query: 245 FLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIE 304
+L ++ SV+YISFG++ P +++ ++ LEAS FIW + R + +
Sbjct: 264 WLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSL---------RDKARVH 314
Query: 305 ENWLPSGFEERMGESKRGL-IIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMV 363
LP GF E+ RG ++ WAPQ +L H AVG F+THCGWNS ESV+ GVP++
Sbjct: 315 ---LPEGFLEK----TRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLI 367
Query: 364 TWPITAEQFSNEKLISDVLKIGVKV 388
P +Q N +++ DVL+IGV++
Sbjct: 368 CRPFFGDQRLNGRMVEDVLEIGVRI 392
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 316 MGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNE 375
+GE + + W PQL IL T F+TH G ST+E++S VPMV P AEQ N
Sbjct: 300 LGEVPPNVEVHQWVPQLDIL--TKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNA 357
Query: 376 KLISDV 381
+ I ++
Sbjct: 358 ERIVEL 363
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 316 MGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNE 375
+GE + + W PQL IL + F+TH G + E ++ PM+ P +QF N
Sbjct: 278 LGELPDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNA 335
Query: 376 KLIS 379
++
Sbjct: 336 DMLQ 339
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/370 (18%), Positives = 134/370 (36%), Gaps = 76/370 (20%)
Query: 19 GHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPIT---IKTLHLPDDI 75
GH P++ +A A G + T T A + +K +G P+ + L + D
Sbjct: 32 GHTYPLLPLATAARAAGHEVTFATGEGFAGTLRKLGFEPVATGXPVFDGFLAALRIRFDT 91
Query: 76 EIPDT----DMSATP-----RTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMN 126
+ P+ +S P R + + L+ ++ RPD +V ++ ++ +
Sbjct: 92 DSPEGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAG 151
Query: 127 IPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVVPGLPDKIELTALSFRFEEKSFG 186
IP I V + P + L+ EE+ G
Sbjct: 152 IP------------TICHGVGRDTPDD----------------------LTRSIEEEVRG 177
Query: 187 IVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSI---DEGKIL 243
+ DL P ++ F + + P SL + R + + ++G +
Sbjct: 178 LAQRLGLDLPPGRIDGFGNPFID-----IFPPSLQEPEFRARPRRHELRPVPFAEQGDLP 232
Query: 244 SFLDSKET-NSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENG 302
++L S++T ++Y++ G+ + + E L GL + + G G
Sbjct: 233 AWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSG------ 286
Query: 303 IEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPM 362
+GE + + W PQ +L H + + H G +TL ++ AGVP
Sbjct: 287 -------------LGEVPANVRLESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQ 331
Query: 363 VTWPITAEQF 372
+++P + F
Sbjct: 332 LSFPWAGDSF 341
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 328 WAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSN 374
W PQ +L H F+TH G N E++ G+P V P+ A+Q N
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 21/122 (17%)
Query: 252 NSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSG 311
++++Y +F L ++ P L A L+ +S +W++ F + G E I++
Sbjct: 522 DAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLR--FPAVG---EPNIQQ------ 570
Query: 312 FEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHC-------GWNSTLESVSAGVPMVT 364
+ + MG + +I AP+ EH G C G + ++ + AG PMVT
Sbjct: 571 YAQNMGLPQNRIIFSPVAPK---EEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVT 627
Query: 365 WP 366
P
Sbjct: 628 MP 629
>pdb|1CB0|A Chain A, Structure Of Human 5'-deoxy-5'-methylthioadenosine
Phosphorylase At 1.7 A Resolution
pdb|1CG6|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With
5'-Deoxy-5'-Methylthioadenosine And Sulfate At 1.7 A
Resolution
pdb|1K27|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase In Complex With A Transition State
Analogue
pdb|1SD1|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Formycin A
pdb|1SD2|A Chain A, Structure Of Human 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With 5'-Methylthiotubercidin
pdb|3OZC|A Chain A, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase In Complex With Pcl-Phenylthiodadmeimma
pdb|3OZD|A Chain A, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase In Complex With Pcl-Phenylthiodadmeimma
pdb|3OZD|B Chain B, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase In Complex With Pcl-Phenylthiodadmeimma
pdb|3OZE|A Chain A, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|B Chain B, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|C Chain C, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|D Chain D, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|E Chain E, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
pdb|3OZE|F Chain F, Crystal Structure Of Human 5'-Deoxy-5'-Methyladenosine
Phosphorylase
Length = 283
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 113 MFHHWSADVINSMNIPRIVF---NGNCCFSRCILENVRKYKPHEKVSS 157
MF W ADVIN +P +V G C S + + +K HE+ S
Sbjct: 185 MFRTWGADVINMTTVPEVVLAKEAGICYASIAMATDYDCWKEHEEAVS 232
>pdb|2VRO|A Chain A, Crystal Structure Of Aldehyde Dehydrogenase From
Burkholderia Xenovorans Lb400
pdb|2VRO|B Chain B, Crystal Structure Of Aldehyde Dehydrogenase From
Burkholderia Xenovorans Lb400
Length = 532
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 349 WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGV 386
W ++ +GVP++ P TA + +++++DV+ G+
Sbjct: 167 WEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGI 204
>pdb|2Y53|A Chain A, Crystal Structure Of E257q Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
pdb|2Y53|B Chain B, Crystal Structure Of E257q Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
Length = 534
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 349 WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGV 386
W ++ +GVP++ P TA + +++++DV+ G+
Sbjct: 169 WEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGI 206
>pdb|2Y5D|A Chain A, Crystal Structure Of C296a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
pdb|2Y5D|B Chain B, Crystal Structure Of C296a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
Length = 534
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 349 WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGV 386
W ++ +GVP++ P TA + +++++DV+ G+
Sbjct: 169 WEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGI 206
>pdb|2Y52|A Chain A, Crystal Structure Of E496a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
pdb|2Y52|B Chain B, Crystal Structure Of E496a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
Length = 534
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 349 WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGV 386
W ++ +GVP++ P TA + +++++DV+ G+
Sbjct: 169 WEKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGI 206
>pdb|2Y51|A Chain A, Crystal Structure Of E167a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
pdb|2Y51|B Chain B, Crystal Structure Of E167a Mutant Of The Box Pathway
Encoded Aldh From Burkholderia Xenovorans Lb400
Length = 534
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 349 WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGV 386
W ++ +GVP++ P TA + +++++DV+ G+
Sbjct: 169 WAKAAPALLSGVPVIVKPATATAWLTQRMVADVVDAGI 206
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 346 HCGWNSTLESVSAGVPMVTWPITAEQFSNEKLI 378
H G +TL +S GVP V+ P+ AE + + +L+
Sbjct: 306 HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLL 338
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 346 HCGWNSTLESVSAGVPMVTWPITAEQFSNEKLI 378
H G +TL +S GVP V+ P+ AE + + +L+
Sbjct: 307 HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLL 339
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 16/106 (15%)
Query: 17 GGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITI-----KTLHL 71
G GH P + + A G + T +T+P A + + +G + + T H+
Sbjct: 14 GHGHVYPSLGLVSELARRGHRITYVTTPLFA-------DEVKAAGAEVVLYKSEFDTFHV 66
Query: 72 PDDIEIPDTDMS---ATPRTDTSMLQEPLKSLLVDSRPDCIVHDMF 114
P+ ++ D + R + ++L+ + L D+ PD +V+D+F
Sbjct: 67 PEVVKQEDAETQLHLVYVRENVAILRA-AEEALGDNPPDLVVYDVF 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,619,002
Number of Sequences: 62578
Number of extensions: 559070
Number of successful extensions: 1135
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1097
Number of HSP's gapped (non-prelim): 24
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)