Query 048562
Match_columns 464
No_of_seqs 129 out of 1253
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 10:39:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 7.6E-62 1.7E-66 494.4 43.6 448 6-462 7-488 (491)
2 PLN03007 UDP-glucosyltransfera 100.0 3.5E-61 7.6E-66 494.2 43.0 442 6-461 4-481 (482)
3 PLN02410 UDP-glucoronosyl/UDP- 100.0 4.3E-60 9.4E-65 479.2 41.6 419 1-460 1-450 (451)
4 PLN02863 UDP-glucoronosyl/UDP- 100.0 6.4E-60 1.4E-64 481.1 42.1 432 6-461 8-472 (477)
5 PLN02992 coniferyl-alcohol glu 100.0 4.7E-60 1E-64 479.4 40.3 427 6-460 4-469 (481)
6 PLN02555 limonoid glucosyltran 100.0 1.8E-59 3.9E-64 476.4 40.7 439 1-462 1-471 (480)
7 PLN02208 glycosyltransferase f 100.0 1.2E-59 2.6E-64 474.8 38.9 407 7-460 4-439 (442)
8 PLN02207 UDP-glycosyltransfera 100.0 7.6E-59 1.6E-63 469.8 40.7 433 5-461 1-466 (468)
9 PLN00164 glucosyltransferase; 100.0 8.4E-59 1.8E-63 474.4 41.4 440 5-462 1-475 (480)
10 PLN03015 UDP-glucosyl transfer 100.0 2E-58 4.3E-63 465.0 40.0 432 7-459 3-467 (470)
11 PLN02210 UDP-glucosyl transfer 100.0 2.5E-58 5.3E-63 468.1 40.7 423 6-459 7-454 (456)
12 PLN02764 glycosyltransferase f 100.0 1.5E-58 3.2E-63 464.6 38.5 411 6-461 4-446 (453)
13 PLN02670 transferase, transfer 100.0 6.5E-58 1.4E-62 463.5 41.6 428 6-461 5-466 (472)
14 PLN00414 glycosyltransferase f 100.0 5.2E-58 1.1E-62 463.4 40.0 412 6-462 3-442 (446)
15 PLN02173 UDP-glucosyl transfer 100.0 3.8E-58 8.2E-63 463.0 38.6 413 5-459 3-447 (449)
16 PLN03004 UDP-glycosyltransfera 100.0 5.7E-58 1.2E-62 462.0 37.2 421 5-449 1-450 (451)
17 PLN02554 UDP-glycosyltransfera 100.0 1E-57 2.2E-62 468.0 38.1 434 7-461 2-479 (481)
18 PLN02562 UDP-glycosyltransfera 100.0 3.3E-57 7.1E-62 459.4 40.2 410 6-459 5-448 (448)
19 PLN02448 UDP-glycosyltransfera 100.0 8.6E-57 1.9E-61 459.5 41.5 422 4-461 7-458 (459)
20 PLN02167 UDP-glycosyltransfera 100.0 9.2E-57 2E-61 460.3 40.4 437 5-462 1-474 (475)
21 PLN02152 indole-3-acetate beta 100.0 2.4E-56 5.2E-61 450.7 38.9 421 5-459 1-455 (455)
22 PHA03392 egt ecdysteroid UDP-g 100.0 1.7E-47 3.7E-52 393.6 31.5 380 7-462 20-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.3E-48 2.9E-53 407.1 6.9 360 9-439 2-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 2.6E-41 5.6E-46 341.6 26.6 371 13-459 1-390 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 3.3E-40 7.1E-45 334.7 23.5 365 8-457 1-400 (401)
26 COG1819 Glycosyl transferases, 100.0 3.7E-40 8E-45 330.6 22.7 375 7-461 1-401 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 2.7E-37 5.9E-42 321.9 20.5 371 7-439 5-438 (496)
28 PRK12446 undecaprenyldiphospho 100.0 9.9E-27 2.1E-31 230.5 25.6 323 7-432 1-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 4E-24 8.6E-29 210.0 22.4 301 8-416 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 2.9E-23 6.4E-28 203.6 26.8 327 8-435 1-340 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 1.2E-21 2.7E-26 192.4 22.5 300 9-420 1-315 (321)
32 PRK00726 murG undecaprenyldiph 99.8 6.1E-19 1.3E-23 176.1 26.4 320 7-429 1-334 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 4.5E-18 9.7E-23 169.2 24.3 326 9-431 1-336 (350)
34 TIGR01133 murG undecaprenyldip 99.7 1.4E-15 3E-20 151.2 24.2 318 9-430 2-332 (348)
35 PRK13609 diacylglycerol glucos 99.7 2.5E-15 5.5E-20 151.3 21.8 333 6-432 3-351 (380)
36 TIGR00215 lpxB lipid-A-disacch 99.7 2.8E-15 6.1E-20 150.7 20.5 348 8-455 6-383 (385)
37 TIGR03590 PseG pseudaminic aci 99.7 9.5E-15 2.1E-19 140.3 21.9 258 17-377 13-278 (279)
38 COG4671 Predicted glycosyl tra 99.7 3.8E-14 8.3E-19 133.3 22.9 328 6-418 8-364 (400)
39 PRK13608 diacylglycerol glucos 99.6 4.4E-14 9.6E-19 142.7 19.6 149 251-434 201-353 (391)
40 PRK00025 lpxB lipid-A-disaccha 99.6 2.1E-13 4.6E-18 137.3 21.4 335 7-437 1-359 (380)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 1E-15 2.3E-20 135.8 -1.7 137 254-420 1-145 (167)
42 TIGR03492 conserved hypothetic 99.4 1.1E-10 2.3E-15 117.7 24.8 324 17-420 6-365 (396)
43 PLN02605 monogalactosyldiacylg 99.4 2.1E-10 4.6E-15 115.6 25.3 82 321-420 265-349 (382)
44 cd03814 GT1_like_2 This family 99.3 1.2E-09 2.7E-14 108.0 26.2 95 320-434 246-347 (364)
45 PLN02871 UDP-sulfoquinovose:DA 99.3 1.8E-09 3.9E-14 111.8 25.6 142 254-435 264-416 (465)
46 cd03823 GT1_ExpE7_like This fa 99.3 2.4E-08 5.3E-13 98.4 31.9 93 320-432 242-342 (359)
47 cd04962 GT1_like_5 This family 99.2 2.3E-08 5E-13 99.9 31.7 331 8-433 1-350 (371)
48 PF03033 Glyco_transf_28: Glyc 99.2 6.2E-12 1.3E-16 107.8 5.0 120 10-138 1-133 (139)
49 cd03817 GT1_UGDG_like This fam 99.2 1.4E-08 3E-13 100.6 29.3 97 320-437 258-361 (374)
50 COG3980 spsG Spore coat polysa 99.2 4.3E-09 9.3E-14 96.7 22.2 294 8-433 1-303 (318)
51 cd03800 GT1_Sucrose_synthase T 99.2 2.6E-08 5.7E-13 100.4 27.7 341 17-434 20-383 (398)
52 cd03808 GT1_cap1E_like This fa 99.1 7.9E-08 1.7E-12 94.3 28.2 329 9-433 1-343 (359)
53 cd03794 GT1_wbuB_like This fam 99.1 4E-08 8.7E-13 97.6 26.3 96 320-435 274-381 (394)
54 cd03816 GT1_ALG1_like This fam 99.1 3.4E-08 7.5E-13 100.7 25.4 92 321-434 294-399 (415)
55 cd03820 GT1_amsD_like This fam 99.1 1E-07 2.3E-12 93.0 26.3 98 320-437 234-337 (348)
56 cd03795 GT1_like_4 This family 99.1 4.2E-07 9.1E-12 90.0 30.5 148 253-436 191-349 (357)
57 cd03801 GT1_YqgM_like This fam 99.1 2.6E-07 5.6E-12 90.7 28.6 322 18-431 14-353 (374)
58 cd03798 GT1_wlbH_like This fam 99.0 8.6E-07 1.9E-11 87.3 31.8 317 17-421 13-346 (377)
59 TIGR00236 wecB UDP-N-acetylglu 99.0 7.3E-08 1.6E-12 96.6 23.2 319 9-420 2-335 (365)
60 PRK10307 putative glycosyl tra 99.0 9.8E-07 2.1E-11 89.9 31.2 147 253-435 229-389 (412)
61 cd03818 GT1_ExpC_like This fam 99.0 5.8E-07 1.3E-11 91.1 29.1 99 320-436 280-383 (396)
62 PRK05749 3-deoxy-D-manno-octul 99.0 8.7E-08 1.9E-12 98.1 23.1 88 332-436 314-405 (425)
63 cd03819 GT1_WavL_like This fam 99.0 4.4E-06 9.5E-11 82.8 33.4 322 17-436 9-348 (355)
64 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 1.2E-07 2.6E-12 94.8 21.3 322 10-420 2-338 (363)
65 cd03799 GT1_amsK_like This is 98.9 1.9E-06 4.2E-11 85.2 29.3 96 320-433 235-341 (355)
66 cd03825 GT1_wcfI_like This fam 98.9 3.9E-07 8.4E-12 90.6 24.0 95 320-434 243-345 (365)
67 TIGR03449 mycothiol_MshA UDP-N 98.9 2.4E-06 5.2E-11 86.7 28.6 95 320-434 282-383 (405)
68 cd03811 GT1_WabH_like This fam 98.9 1.2E-06 2.6E-11 85.5 25.4 321 9-428 1-341 (353)
69 cd03807 GT1_WbnK_like This fam 98.8 6.5E-06 1.4E-10 80.9 29.7 91 320-432 250-345 (365)
70 cd03822 GT1_ecORF704_like This 98.8 6.1E-06 1.3E-10 81.7 28.7 98 320-436 246-351 (366)
71 cd03821 GT1_Bme6_like This fam 98.8 4.8E-06 1E-10 82.3 27.8 94 320-433 261-359 (375)
72 cd03805 GT1_ALG2_like This fam 98.8 7.8E-06 1.7E-10 82.4 29.8 94 320-434 279-379 (392)
73 cd04951 GT1_WbdM_like This fam 98.8 3E-06 6.4E-11 84.0 25.3 79 320-420 244-327 (360)
74 PRK09922 UDP-D-galactose:(gluc 98.8 9.4E-06 2E-10 81.1 28.4 148 253-436 180-343 (359)
75 cd05844 GT1_like_7 Glycosyltra 98.8 7.6E-06 1.7E-10 81.5 27.4 94 320-433 244-350 (367)
76 cd03812 GT1_CapH_like This fam 98.7 1.1E-05 2.3E-10 80.0 27.5 83 320-423 248-335 (358)
77 PF04007 DUF354: Protein of un 98.7 1.4E-05 3E-10 78.2 25.5 111 8-134 1-111 (335)
78 cd03796 GT1_PIG-A_like This fa 98.7 1.9E-05 4.2E-10 80.0 27.4 103 17-132 13-119 (398)
79 TIGR02472 sucr_P_syn_N sucrose 98.7 2.5E-05 5.4E-10 80.3 28.2 95 320-432 316-419 (439)
80 TIGR03088 stp2 sugar transfera 98.6 2.7E-05 5.9E-10 78.0 27.3 95 321-433 255-352 (374)
81 cd04955 GT1_like_6 This family 98.6 6.6E-05 1.4E-09 74.5 29.5 89 320-432 247-343 (363)
82 cd03802 GT1_AviGT4_like This f 98.6 5.7E-05 1.2E-09 74.1 27.9 130 255-419 173-308 (335)
83 COG1519 KdtA 3-deoxy-D-manno-o 98.6 6.5E-05 1.4E-09 73.9 27.0 319 17-438 58-405 (419)
84 TIGR02149 glgA_Coryne glycogen 98.6 6.9E-05 1.5E-09 75.4 27.5 153 254-434 202-367 (388)
85 TIGR02468 sucrsPsyn_pln sucros 98.5 0.00014 2.9E-09 80.3 29.3 98 320-435 547-653 (1050)
86 PRK14089 ipid-A-disaccharide s 98.5 6.3E-06 1.4E-10 81.2 16.9 156 253-438 168-333 (347)
87 PLN02275 transferase, transfer 98.4 0.00036 7.7E-09 70.1 28.4 121 7-134 4-134 (371)
88 TIGR03087 stp1 sugar transfera 98.4 9.6E-05 2.1E-09 74.9 24.4 95 320-434 279-377 (397)
89 cd03809 GT1_mtfB_like This fam 98.4 9.3E-05 2E-09 73.1 23.1 94 320-435 252-352 (365)
90 cd03804 GT1_wbaZ_like This fam 98.4 0.0001 2.2E-09 73.2 22.6 127 255-420 197-327 (351)
91 TIGR03568 NeuC_NnaA UDP-N-acet 98.3 0.00019 4E-09 71.9 23.6 320 9-418 2-338 (365)
92 TIGR02470 sucr_synth sucrose s 98.3 0.0019 4.1E-08 69.9 31.9 95 320-432 618-726 (784)
93 PF02350 Epimerase_2: UDP-N-ac 98.3 9.2E-06 2E-10 80.5 13.1 300 29-419 1-318 (346)
94 PRK00654 glgA glycogen synthas 98.3 0.00099 2.2E-08 69.1 28.3 134 253-418 282-427 (466)
95 PRK15179 Vi polysaccharide bio 98.3 0.0013 2.8E-08 70.7 29.3 96 320-433 573-673 (694)
96 cd03806 GT1_ALG11_like This fa 98.2 0.00082 1.8E-08 68.6 25.4 81 320-421 304-394 (419)
97 PLN00142 sucrose synthase 98.2 0.0013 2.8E-08 71.1 27.4 72 343-432 670-749 (815)
98 PLN02846 digalactosyldiacylgly 98.2 0.001 2.2E-08 68.0 24.7 73 325-420 288-364 (462)
99 PLN02949 transferase, transfer 98.1 0.016 3.4E-07 59.9 32.7 98 320-437 334-441 (463)
100 cd03791 GT1_Glycogen_synthase_ 98.1 0.0027 5.9E-08 65.9 27.6 84 320-419 350-442 (476)
101 KOG3349 Predicted glycosyltran 98.1 1.1E-05 2.3E-10 67.4 7.6 119 254-388 5-132 (170)
102 cd03792 GT1_Trehalose_phosphor 98.1 0.0037 7.9E-08 62.7 27.4 92 320-433 251-351 (372)
103 PRK01021 lpxB lipid-A-disaccha 98.0 0.00047 1E-08 71.7 19.4 270 93-438 298-590 (608)
104 COG0381 WecB UDP-N-acetylgluco 98.0 0.0016 3.4E-08 63.8 21.4 335 5-434 1-352 (383)
105 COG0763 LpxB Lipid A disacchar 98.0 0.00052 1.1E-08 67.0 17.8 355 7-459 1-380 (381)
106 TIGR02095 glgA glycogen/starch 98.0 0.011 2.5E-07 61.3 28.8 130 253-418 291-436 (473)
107 PF13844 Glyco_transf_41: Glyc 97.9 8.6E-05 1.9E-09 75.2 11.8 153 251-430 283-441 (468)
108 cd04949 GT1_gtfA_like This fam 97.9 0.0034 7.3E-08 62.8 22.3 102 320-438 260-364 (372)
109 PF00534 Glycos_transf_1: Glyc 97.8 0.00013 2.8E-09 64.5 9.0 147 251-432 13-171 (172)
110 TIGR02918 accessory Sec system 97.6 0.016 3.4E-07 60.6 22.7 153 253-438 319-485 (500)
111 PRK15427 colanic acid biosynth 97.6 0.0018 3.8E-08 65.9 15.4 95 320-434 278-386 (406)
112 cd04946 GT1_AmsK_like This fam 97.6 0.00078 1.7E-08 68.5 12.7 98 320-434 288-392 (407)
113 PLN02316 synthase/transferase 97.6 0.19 4.2E-06 56.2 31.3 106 320-446 899-1019(1036)
114 PF02684 LpxB: Lipid-A-disacch 97.5 0.0029 6.4E-08 62.9 14.9 282 93-449 70-366 (373)
115 PRK15484 lipopolysaccharide 1, 97.4 0.0083 1.8E-07 60.5 16.5 83 320-421 256-346 (380)
116 COG5017 Uncharacterized conser 97.3 0.0019 4.2E-08 53.2 9.2 108 255-389 2-122 (161)
117 PF13477 Glyco_trans_4_2: Glyc 97.2 0.0053 1.2E-07 52.0 11.7 103 9-134 1-107 (139)
118 cd04950 GT1_like_1 Glycosyltra 97.2 0.28 6.1E-06 49.2 28.7 79 320-420 253-341 (373)
119 PRK10125 putative glycosyl tra 97.2 0.18 3.8E-06 51.3 24.2 114 255-413 243-365 (405)
120 cd01635 Glycosyltransferase_GT 97.1 0.14 3.1E-06 46.3 21.1 68 17-133 12-82 (229)
121 PLN02501 digalactosyldiacylgly 97.1 0.18 3.9E-06 53.7 22.8 76 322-420 602-682 (794)
122 cd03813 GT1_like_3 This family 97.1 0.025 5.4E-07 58.8 16.9 95 320-434 353-457 (475)
123 PF13692 Glyco_trans_1_4: Glyc 96.9 0.0038 8.2E-08 52.5 7.8 80 320-419 52-135 (135)
124 PF13579 Glyco_trans_4_4: Glyc 96.7 0.0044 9.6E-08 53.2 6.4 95 22-133 5-103 (160)
125 TIGR02193 heptsyl_trn_I lipopo 96.6 0.2 4.4E-06 49.0 18.5 107 9-131 1-111 (319)
126 PRK09814 beta-1,6-galactofuran 96.6 0.017 3.7E-07 57.0 10.7 110 320-455 206-330 (333)
127 KOG4626 O-linked N-acetylgluco 96.4 0.028 6.2E-07 57.8 10.7 124 251-388 757-887 (966)
128 TIGR02201 heptsyl_trn_III lipo 96.2 0.54 1.2E-05 46.5 18.9 105 9-131 1-108 (344)
129 COG1817 Uncharacterized protei 96.1 0.85 1.8E-05 43.6 18.2 100 17-135 9-113 (346)
130 COG3914 Spy Predicted O-linked 96.1 0.054 1.2E-06 55.6 10.9 124 250-388 427-560 (620)
131 PF06258 Mito_fiss_Elm1: Mitoc 95.8 2 4.3E-05 41.9 22.7 57 330-389 221-281 (311)
132 PF01975 SurE: Survival protei 95.4 0.092 2E-06 47.5 8.6 121 8-135 1-134 (196)
133 PHA01633 putative glycosyl tra 95.3 0.23 5E-06 48.9 11.9 103 320-438 200-325 (335)
134 PRK14098 glycogen synthase; Pr 95.1 0.52 1.1E-05 49.1 14.6 81 319-417 360-449 (489)
135 PF06722 DUF1205: Protein of u 95.0 0.045 9.8E-07 43.3 4.7 54 238-291 26-84 (97)
136 cd03789 GT1_LPS_heptosyltransf 94.7 2.3 5E-05 40.6 17.0 101 9-130 1-104 (279)
137 PF13439 Glyco_transf_4: Glyco 94.7 0.17 3.7E-06 43.9 8.4 99 17-135 11-110 (177)
138 PF12000 Glyco_trans_4_3: Gkyc 94.6 0.27 5.8E-06 43.3 9.1 90 33-133 1-95 (171)
139 PRK15490 Vi polysaccharide bio 94.3 1.5 3.3E-05 46.0 15.2 65 320-391 454-523 (578)
140 PRK10017 colanic acid biosynth 93.2 2.2 4.8E-05 43.5 14.1 86 333-436 323-410 (426)
141 PF13524 Glyco_trans_1_2: Glyc 93.2 0.69 1.5E-05 35.9 8.3 65 346-430 9-73 (92)
142 PF08660 Alg14: Oligosaccharid 93.1 0.51 1.1E-05 41.6 8.2 115 13-134 3-129 (170)
143 COG0859 RfaF ADP-heptose:LPS h 92.7 9.1 0.0002 37.7 17.4 106 7-132 1-108 (334)
144 PHA01630 putative group 1 glyc 92.6 2 4.3E-05 42.3 12.4 41 328-368 197-242 (331)
145 PRK02261 methylaspartate mutas 92.1 0.95 2.1E-05 38.4 8.2 49 5-53 1-49 (137)
146 PRK10422 lipopolysaccharide co 92.0 1.6 3.5E-05 43.4 11.2 107 6-131 4-113 (352)
147 COG1618 Predicted nucleotide k 91.5 1.7 3.7E-05 37.7 8.9 100 6-116 4-111 (179)
148 cd02067 B12-binding B12 bindin 90.6 3.7 8E-05 33.6 10.2 44 9-52 1-44 (119)
149 COG0496 SurE Predicted acid ph 90.4 1.9 4.2E-05 40.2 9.0 113 8-135 1-126 (252)
150 PRK14099 glycogen synthase; Pr 90.3 6.4 0.00014 41.1 13.9 41 5-45 1-47 (485)
151 PLN02939 transferase, transfer 89.8 7.9 0.00017 43.3 14.4 84 320-418 836-930 (977)
152 PRK10916 ADP-heptose:LPS hepto 89.8 3.1 6.7E-05 41.2 10.8 103 8-131 1-106 (348)
153 TIGR02919 accessory Sec system 89.8 7.8 0.00017 39.8 13.8 92 320-434 327-423 (438)
154 TIGR00715 precor6x_red precorr 89.4 2.5 5.5E-05 39.9 9.2 91 8-132 1-98 (256)
155 TIGR03713 acc_sec_asp1 accesso 88.8 1.9 4.2E-05 45.2 8.7 93 321-438 409-507 (519)
156 PRK13932 stationary phase surv 88.7 8.2 0.00018 36.4 11.9 117 6-134 4-133 (257)
157 PRK12342 hypothetical protein; 88.1 4.6 0.0001 38.0 9.9 95 24-134 40-144 (254)
158 TIGR00087 surE 5'/3'-nucleotid 86.4 11 0.00024 35.3 11.4 115 8-134 1-128 (244)
159 PRK13933 stationary phase surv 85.8 13 0.00027 35.1 11.4 116 8-134 1-129 (253)
160 PRK03359 putative electron tra 85.4 7.3 0.00016 36.8 9.7 41 94-134 101-147 (256)
161 PF09314 DUF1972: Domain of un 85.4 16 0.00036 32.6 11.4 112 7-131 1-123 (185)
162 COG1066 Sms Predicted ATP-depe 84.9 9.2 0.0002 38.4 10.4 103 8-133 94-217 (456)
163 COG3660 Predicted nucleoside-d 84.8 35 0.00076 32.1 18.3 98 254-365 164-271 (329)
164 TIGR02400 trehalose_OtsA alpha 84.8 12 0.00027 38.6 12.0 104 326-459 341-455 (456)
165 PRK13934 stationary phase surv 84.6 12 0.00026 35.5 10.7 113 8-134 1-127 (266)
166 KOG2941 Beta-1,4-mannosyltrans 84.6 43 0.00093 32.9 28.3 128 5-139 10-142 (444)
167 cd02070 corrinoid_protein_B12- 84.5 7 0.00015 35.4 9.0 47 7-53 82-128 (201)
168 COG0003 ArsA Predicted ATPase 84.2 5.3 0.00011 39.1 8.5 41 7-47 1-42 (322)
169 PRK05986 cob(I)alamin adenolsy 84.2 23 0.00049 31.8 11.8 101 6-116 21-126 (191)
170 PRK05973 replicative DNA helic 84.2 4.1 8.9E-05 38.0 7.4 112 9-135 66-192 (237)
171 PRK06849 hypothetical protein; 84.0 4 8.6E-05 41.2 7.9 81 6-113 3-84 (389)
172 PRK13935 stationary phase surv 83.9 16 0.00035 34.3 11.2 115 8-134 1-128 (253)
173 TIGR02195 heptsyl_trn_II lipop 83.8 7 0.00015 38.4 9.4 101 9-130 1-104 (334)
174 PRK10964 ADP-heptose:LPS hepto 83.0 6.8 0.00015 38.3 8.9 45 8-52 1-47 (322)
175 PRK00346 surE 5'(3')-nucleotid 82.6 19 0.00041 33.9 11.1 111 8-134 1-124 (250)
176 TIGR02370 pyl_corrinoid methyl 82.5 16 0.00035 33.0 10.4 50 6-55 83-132 (197)
177 PF04127 DFP: DNA / pantothena 81.3 5.1 0.00011 35.8 6.6 39 7-45 3-53 (185)
178 PF01012 ETF: Electron transfe 81.2 5.6 0.00012 34.6 6.8 108 10-133 2-121 (164)
179 COG2894 MinD Septum formation 80.9 12 0.00027 34.2 8.7 40 7-46 1-42 (272)
180 smart00851 MGS MGS-like domain 80.3 11 0.00025 29.0 7.6 80 24-131 2-90 (90)
181 cd00561 CobA_CobO_BtuR ATP:cor 80.1 34 0.00074 29.7 11.1 98 9-116 4-106 (159)
182 PF00551 Formyl_trans_N: Formy 79.8 17 0.00037 32.3 9.5 106 8-135 1-110 (181)
183 cd01424 MGS_CPS_II Methylglyox 79.5 13 0.00029 29.8 8.1 85 19-132 10-101 (110)
184 PF02951 GSH-S_N: Prokaryotic 79.2 2.8 6E-05 34.5 3.9 39 8-46 1-42 (119)
185 COG4370 Uncharacterized protei 78.8 7.7 0.00017 37.1 7.1 86 327-427 301-387 (412)
186 PRK05647 purN phosphoribosylgl 78.7 16 0.00035 33.1 9.1 106 7-133 1-109 (200)
187 COG2185 Sbm Methylmalonyl-CoA 78.4 12 0.00027 31.7 7.5 49 5-53 10-58 (143)
188 cd01121 Sms Sms (bacterial rad 78.4 21 0.00045 35.8 10.6 102 10-133 85-207 (372)
189 PF02374 ArsA_ATPase: Anion-tr 78.1 3.9 8.5E-05 39.8 5.2 39 10-48 4-42 (305)
190 PRK09620 hypothetical protein; 77.9 14 0.0003 34.3 8.6 38 7-44 3-52 (229)
191 COG2109 BtuR ATP:corrinoid ade 77.8 36 0.00077 30.4 10.5 100 8-116 29-133 (198)
192 PF04413 Glycos_transf_N: 3-De 77.3 7.7 0.00017 34.7 6.5 94 15-134 28-126 (186)
193 PRK04328 hypothetical protein; 77.2 46 0.00099 31.2 12.1 105 7-115 23-138 (249)
194 PRK08057 cobalt-precorrin-6x r 76.9 14 0.0003 34.8 8.3 90 7-132 2-98 (248)
195 cd00532 MGS-like MGS-like doma 76.8 16 0.00035 29.6 7.8 85 20-132 10-105 (112)
196 COG1703 ArgK Putative periplas 76.5 19 0.00042 34.6 9.0 117 7-132 51-172 (323)
197 TIGR03877 thermo_KaiC_1 KaiC d 76.0 50 0.0011 30.6 12.0 106 7-116 21-137 (237)
198 cd01715 ETF_alpha The electron 76.0 34 0.00074 29.8 10.3 42 92-133 70-114 (168)
199 cd01124 KaiC KaiC is a circadi 76.0 12 0.00027 32.9 7.6 44 10-53 2-45 (187)
200 PF02310 B12-binding: B12 bind 75.3 38 0.00082 27.3 9.8 45 8-52 1-45 (121)
201 PF02441 Flavoprotein: Flavopr 75.2 3.4 7.3E-05 34.5 3.4 45 8-53 1-45 (129)
202 PRK01077 cobyrinic acid a,c-di 75.0 29 0.00063 35.8 11.0 107 6-136 2-124 (451)
203 TIGR00708 cobA cob(I)alamin ad 74.1 51 0.0011 29.1 10.6 99 7-116 5-108 (173)
204 PF06925 MGDG_synth: Monogalac 74.0 6.5 0.00014 34.5 5.1 42 92-133 76-123 (169)
205 TIGR02655 circ_KaiC circadian 73.6 19 0.00041 37.5 9.2 92 8-116 264-364 (484)
206 PRK06067 flagellar accessory p 73.0 18 0.00038 33.5 8.1 102 8-116 26-131 (234)
207 COG0541 Ffh Signal recognition 72.6 12 0.00027 37.7 7.1 49 6-54 99-147 (451)
208 COG0132 BioD Dethiobiotin synt 72.5 41 0.00088 31.0 10.0 120 8-136 3-146 (223)
209 KOG0780 Signal recognition par 72.2 8.2 0.00018 38.3 5.6 50 6-55 100-149 (483)
210 cd01423 MGS_CPS_I_III Methylgl 71.2 37 0.0008 27.5 8.7 87 20-131 11-106 (116)
211 PRK13789 phosphoribosylamine-- 71.2 15 0.00032 37.7 7.6 92 6-131 3-97 (426)
212 cd01985 ETF The electron trans 70.9 30 0.00065 30.5 8.8 41 92-132 78-121 (181)
213 PRK11823 DNA repair protein Ra 70.8 37 0.0008 35.0 10.4 103 9-133 82-205 (446)
214 COG1797 CobB Cobyrinic acid a, 70.4 20 0.00044 36.2 8.0 33 9-41 2-35 (451)
215 PF05159 Capsule_synth: Capsul 70.3 21 0.00046 33.8 8.1 44 320-366 182-225 (269)
216 TIGR00416 sms DNA repair prote 70.3 32 0.00069 35.6 9.8 103 9-133 96-219 (454)
217 PRK08305 spoVFB dipicolinate s 70.2 7.2 0.00016 35.1 4.5 43 6-49 4-47 (196)
218 PLN03063 alpha,alpha-trehalose 69.4 25 0.00055 39.1 9.5 99 333-460 371-477 (797)
219 TIGR02015 BchY chlorophyllide 69.1 44 0.00096 34.1 10.5 91 8-133 286-380 (422)
220 cd03114 ArgK-like The function 69.0 33 0.00072 29.3 8.3 36 10-45 2-37 (148)
221 TIGR03878 thermo_KaiC_2 KaiC d 67.9 1.1E+02 0.0024 28.8 12.9 99 8-115 37-141 (259)
222 PF12146 Hydrolase_4: Putative 67.4 11 0.00025 28.3 4.5 35 7-41 15-49 (79)
223 PLN00016 RNA-binding protein; 67.3 53 0.0012 32.8 10.7 40 6-45 51-90 (378)
224 cd02069 methionine_synthase_B1 67.1 36 0.00079 31.1 8.6 48 6-53 87-134 (213)
225 cd03788 GT1_TPS Trehalose-6-Ph 66.7 17 0.00037 37.6 7.1 73 325-420 345-428 (460)
226 PRK06029 3-octaprenyl-4-hydrox 66.5 7.9 0.00017 34.6 3.9 45 7-52 1-46 (185)
227 TIGR01501 MthylAspMutase methy 65.9 40 0.00086 28.4 7.8 47 7-53 1-47 (134)
228 PRK07313 phosphopantothenoylcy 65.8 7.4 0.00016 34.7 3.6 45 7-52 1-45 (182)
229 cd02071 MM_CoA_mut_B12_BD meth 65.1 76 0.0016 26.0 12.8 44 9-52 1-44 (122)
230 PF02585 PIG-L: GlcNAc-PI de-N 64.8 23 0.0005 29.1 6.3 81 23-113 13-108 (128)
231 PRK13931 stationary phase surv 64.4 54 0.0012 31.1 9.3 112 9-134 2-129 (261)
232 TIGR03880 KaiC_arch_3 KaiC dom 64.4 79 0.0017 28.8 10.5 102 8-116 17-118 (224)
233 COG1422 Predicted membrane pro 64.0 20 0.00044 32.1 5.9 73 351-445 24-96 (201)
234 PF08323 Glyco_transf_5: Starc 63.8 52 0.0011 30.7 9.2 25 21-45 19-43 (245)
235 cd01974 Nitrogenase_MoFe_beta 63.6 75 0.0016 32.6 11.1 97 7-133 303-402 (435)
236 PRK06988 putative formyltransf 63.6 53 0.0011 32.0 9.4 99 7-135 2-108 (312)
237 PF00448 SRP54: SRP54-type pro 62.7 38 0.00083 30.5 7.8 90 9-114 3-92 (196)
238 cd01965 Nitrogenase_MoFe_beta_ 62.6 87 0.0019 32.0 11.3 36 95-133 361-396 (428)
239 PRK07206 hypothetical protein; 62.4 32 0.00069 34.9 8.1 93 7-129 2-96 (416)
240 cd01980 Chlide_reductase_Y Chl 62.3 47 0.001 33.8 9.3 93 9-133 282-375 (416)
241 cd00984 DnaB_C DnaB helicase C 62.3 38 0.00083 31.2 8.1 43 10-52 16-59 (242)
242 PF05673 DUF815: Protein of un 61.2 1.2E+02 0.0027 28.3 10.8 60 384-460 185-247 (249)
243 PF02571 CbiJ: Precorrin-6x re 60.1 61 0.0013 30.5 8.9 92 8-132 1-99 (249)
244 TIGR00347 bioD dethiobiotin sy 59.7 47 0.001 28.6 7.7 27 15-41 6-32 (166)
245 COG2874 FlaH Predicted ATPases 59.1 43 0.00092 30.7 7.1 95 11-117 32-135 (235)
246 PRK13982 bifunctional SbtC-lik 58.9 38 0.00081 35.1 7.7 40 6-45 255-306 (475)
247 cd03793 GT1_Glycogen_synthase_ 58.2 36 0.00078 36.1 7.5 79 331-419 468-552 (590)
248 PF08433 KTI12: Chromatin asso 57.9 1E+02 0.0022 29.4 10.0 105 7-140 1-111 (270)
249 PF02142 MGS: MGS-like domain 57.6 17 0.00038 28.3 4.1 85 24-131 2-95 (95)
250 TIGR00639 PurN phosphoribosylg 57.5 1.1E+02 0.0025 27.3 9.8 105 8-133 1-108 (190)
251 PRK05920 aromatic acid decarbo 56.6 15 0.00034 33.3 4.1 45 7-52 3-47 (204)
252 PRK09302 circadian clock prote 56.6 73 0.0016 33.4 9.7 101 7-116 273-374 (509)
253 PRK14099 glycogen synthase; Pr 56.5 17 0.00038 37.8 5.0 96 320-430 349-458 (485)
254 TIGR03446 mycothiol_Mca mycoth 56.4 52 0.0011 31.6 7.8 21 91-111 107-127 (283)
255 KOG3062 RNA polymerase II elon 56.0 62 0.0014 29.9 7.6 38 7-44 1-39 (281)
256 PRK14098 glycogen synthase; Pr 55.9 19 0.00041 37.6 5.2 41 5-45 3-49 (489)
257 TIGR00460 fmt methionyl-tRNA f 55.7 90 0.002 30.4 9.6 32 8-44 1-32 (313)
258 cd02065 B12-binding_like B12 b 55.3 98 0.0021 24.9 8.6 42 10-51 2-43 (125)
259 PRK10867 signal recognition pa 55.3 51 0.0011 33.8 8.0 44 7-50 100-144 (433)
260 PRK13196 pyrrolidone-carboxyla 55.2 26 0.00056 32.0 5.3 69 7-115 1-71 (211)
261 PRK11889 flhF flagellar biosyn 54.6 96 0.0021 31.5 9.5 41 7-47 241-281 (436)
262 TIGR01425 SRP54_euk signal rec 54.1 75 0.0016 32.5 8.9 41 8-48 101-141 (429)
263 PRK14501 putative bifunctional 53.9 31 0.00068 38.0 6.7 111 324-460 345-462 (726)
264 PRK11199 tyrA bifunctional cho 53.9 1.3E+02 0.0029 30.1 10.7 96 6-132 97-196 (374)
265 PRK05595 replicative DNA helic 53.7 46 0.001 34.2 7.5 42 10-51 204-246 (444)
266 PF01075 Glyco_transf_9: Glyco 52.9 43 0.00094 30.9 6.7 97 251-365 104-208 (247)
267 PRK00784 cobyric acid synthase 52.7 1.1E+02 0.0023 32.0 10.1 37 7-43 2-39 (488)
268 cd03466 Nitrogenase_NifN_2 Nit 52.7 1.3E+02 0.0027 30.9 10.5 35 95-132 362-396 (429)
269 COG0467 RAD55 RecA-superfamily 52.6 1E+02 0.0022 29.0 9.2 107 7-116 23-135 (260)
270 PRK06395 phosphoribosylamine-- 52.3 62 0.0013 33.2 8.2 91 7-132 2-95 (435)
271 TIGR00750 lao LAO/AO transport 52.2 72 0.0016 30.8 8.3 40 7-46 34-73 (300)
272 COG1484 DnaC DNA replication p 52.0 22 0.00047 33.6 4.5 47 7-53 105-151 (254)
273 PRK14478 nitrogenase molybdenu 52.0 1.2E+02 0.0027 31.4 10.4 94 7-132 324-417 (475)
274 COG1748 LYS9 Saccharopine dehy 51.2 1.1E+02 0.0025 30.7 9.5 95 7-134 1-100 (389)
275 COG0801 FolK 7,8-dihydro-6-hyd 51.2 29 0.00062 30.2 4.6 37 254-290 3-39 (160)
276 PRK08760 replicative DNA helic 51.1 56 0.0012 34.0 7.7 42 10-51 232-274 (476)
277 COG2099 CobK Precorrin-6x redu 50.4 1.5E+02 0.0032 27.9 9.4 92 7-132 2-99 (257)
278 COG0287 TyrA Prephenate dehydr 50.2 1.7E+02 0.0037 28.0 10.3 42 7-53 3-44 (279)
279 TIGR03600 phage_DnaB phage rep 50.1 74 0.0016 32.4 8.3 42 10-51 197-239 (421)
280 PF07355 GRDB: Glycine/sarcosi 49.8 29 0.00063 34.1 4.9 45 89-133 64-118 (349)
281 TIGR01283 nifE nitrogenase mol 49.5 1.4E+02 0.0031 30.8 10.4 37 94-133 384-420 (456)
282 PF03308 ArgK: ArgK protein; 49.3 26 0.00055 33.1 4.3 118 7-133 29-151 (266)
283 PRK13896 cobyrinic acid a,c-di 49.3 1.2E+02 0.0026 31.1 9.5 106 7-136 1-115 (433)
284 TIGR00379 cobB cobyrinic acid 49.1 1.1E+02 0.0024 31.5 9.5 104 10-136 2-120 (449)
285 TIGR02237 recomb_radB DNA repa 48.6 1.7E+02 0.0036 26.2 9.7 92 10-116 15-108 (209)
286 PF00731 AIRC: AIR carboxylase 48.4 1.7E+02 0.0036 25.2 8.8 139 254-439 2-148 (150)
287 PRK06249 2-dehydropantoate 2-r 48.3 40 0.00087 32.8 5.9 36 5-45 3-38 (313)
288 PRK14106 murD UDP-N-acetylmura 48.3 1.1E+02 0.0024 31.3 9.4 35 6-45 4-38 (450)
289 PRK10964 ADP-heptose:LPS hepto 48.1 1.1E+02 0.0024 29.7 9.0 95 252-365 178-278 (322)
290 PRK07414 cob(I)yrinic acid a,c 47.8 2E+02 0.0044 25.5 11.4 102 6-116 20-126 (178)
291 PRK12767 carbamoyl phosphate s 47.6 65 0.0014 31.3 7.3 33 7-45 1-35 (326)
292 PRK13195 pyrrolidone-carboxyla 47.6 31 0.00067 31.8 4.5 27 7-33 1-29 (222)
293 TIGR00665 DnaB replicative DNA 46.9 91 0.002 31.9 8.5 43 10-52 198-241 (434)
294 cd07025 Peptidase_S66 LD-Carbo 46.7 40 0.00086 32.3 5.4 74 265-368 46-121 (282)
295 PRK12446 undecaprenyldiphospho 46.6 92 0.002 30.9 8.2 26 338-365 92-120 (352)
296 PF06745 KaiC: KaiC; InterPro 46.4 42 0.00092 30.7 5.5 98 7-116 19-126 (226)
297 TIGR00959 ffh signal recogniti 45.9 90 0.0019 32.0 8.0 43 8-50 100-143 (428)
298 PF01210 NAD_Gly3P_dh_N: NAD-d 45.7 15 0.00032 31.7 2.1 32 9-45 1-32 (157)
299 PRK02910 light-independent pro 45.6 1.6E+02 0.0034 31.0 10.1 36 95-133 352-387 (519)
300 PF02572 CobA_CobO_BtuR: ATP:c 45.6 1.1E+02 0.0023 27.1 7.4 99 8-116 4-107 (172)
301 PRK08506 replicative DNA helic 45.6 1E+02 0.0022 32.1 8.5 43 10-52 195-237 (472)
302 TIGR02852 spore_dpaB dipicolin 45.5 25 0.00054 31.5 3.5 39 9-47 2-40 (187)
303 cd01968 Nitrogenase_NifE_I Nit 45.5 2E+02 0.0043 29.1 10.6 35 95-132 346-380 (410)
304 TIGR01285 nifN nitrogenase mol 45.0 1.6E+02 0.0034 30.2 9.8 87 7-132 311-397 (432)
305 PRK08533 flagellar accessory p 44.8 1E+02 0.0023 28.4 7.8 47 7-53 24-70 (230)
306 COG4088 Predicted nucleotide k 44.4 30 0.00066 31.5 3.8 38 7-44 1-38 (261)
307 PRK10422 lipopolysaccharide co 44.0 93 0.002 30.7 7.8 99 252-365 183-287 (352)
308 PF06506 PrpR_N: Propionate ca 44.0 47 0.001 29.2 5.1 33 336-369 31-63 (176)
309 PRK06732 phosphopantothenate-- 44.0 29 0.00064 32.1 3.9 21 24-44 29-49 (229)
310 cd02072 Glm_B12_BD B12 binding 44.0 1.1E+02 0.0024 25.4 7.0 45 9-53 1-45 (128)
311 COG0552 FtsY Signal recognitio 44.0 61 0.0013 31.7 6.1 47 7-53 139-185 (340)
312 PRK12815 carB carbamoyl phosph 43.9 1.8E+02 0.004 33.7 11.0 45 1-45 1-51 (1068)
313 TIGR00725 conserved hypothetic 43.8 1.1E+02 0.0023 26.6 7.2 39 329-367 82-123 (159)
314 COG1348 NifH Nitrogenase subun 43.7 52 0.0011 30.5 5.2 47 7-53 1-47 (278)
315 cd01122 GP4d_helicase GP4d_hel 43.5 71 0.0015 30.1 6.7 43 9-51 32-75 (271)
316 PRK06321 replicative DNA helic 43.4 1.1E+02 0.0024 31.8 8.3 41 10-50 229-270 (472)
317 TIGR00421 ubiX_pad polyprenyl 43.3 25 0.00055 31.3 3.2 43 9-52 1-43 (181)
318 COG0299 PurN Folate-dependent 43.3 2.5E+02 0.0054 25.3 10.1 103 8-132 1-107 (200)
319 TIGR00877 purD phosphoribosyla 42.8 98 0.0021 31.4 8.0 90 8-131 1-93 (423)
320 cd03115 SRP The signal recogni 42.8 1.8E+02 0.004 25.0 8.8 39 10-48 3-41 (173)
321 PRK05784 phosphoribosylamine-- 42.6 1.1E+02 0.0024 32.0 8.2 94 8-132 1-99 (486)
322 cd07062 Peptidase_S66_mccF_lik 42.6 48 0.001 32.3 5.3 74 265-368 50-125 (308)
323 PRK06718 precorrin-2 dehydroge 42.2 2.6E+02 0.0057 25.2 10.5 146 251-439 10-164 (202)
324 PRK13197 pyrrolidone-carboxyla 42.0 56 0.0012 30.0 5.4 27 7-33 1-29 (215)
325 TIGR00345 arsA arsenite-activa 42.0 64 0.0014 30.9 6.1 23 25-47 3-25 (284)
326 KOG2825 Putative arsenite-tran 41.9 1.2E+02 0.0026 28.6 7.3 43 6-48 17-60 (323)
327 PF04464 Glyphos_transf: CDP-G 41.9 42 0.0009 33.4 5.0 100 320-438 251-352 (369)
328 PRK05579 bifunctional phosphop 41.8 39 0.00084 34.2 4.7 48 5-53 4-51 (399)
329 PRK05632 phosphate acetyltrans 41.4 2.7E+02 0.0058 30.6 11.3 103 9-136 4-116 (684)
330 KOG0853 Glycosyltransferase [C 40.9 20 0.00042 37.1 2.4 67 343-425 370-439 (495)
331 PRK13234 nifH nitrogenase redu 40.7 50 0.0011 31.8 5.1 39 6-44 3-41 (295)
332 PF03446 NAD_binding_2: NAD bi 40.3 22 0.00048 30.8 2.4 32 7-43 1-32 (163)
333 PRK13011 formyltetrahydrofolat 40.3 2E+02 0.0042 27.7 9.0 102 5-132 87-193 (286)
334 cd07039 TPP_PYR_POX Pyrimidine 40.1 2.5E+02 0.0053 24.3 10.2 27 340-366 64-96 (164)
335 COG2607 Predicted ATPase (AAA+ 39.9 2.1E+02 0.0045 27.0 8.5 62 383-461 216-280 (287)
336 PF01470 Peptidase_C15: Pyrogl 39.8 44 0.00095 30.3 4.3 65 8-112 1-67 (202)
337 CHL00072 chlL photochlorophyll 39.7 50 0.0011 31.8 4.9 37 8-44 1-37 (290)
338 PRK14477 bifunctional nitrogen 39.5 2.1E+02 0.0045 32.6 10.3 96 6-134 319-415 (917)
339 COG0438 RfaG Glycosyltransfera 39.1 3.2E+02 0.0069 25.3 16.9 80 321-420 257-343 (381)
340 PRK09165 replicative DNA helic 39.1 1.1E+02 0.0024 32.1 7.6 43 10-52 220-277 (497)
341 PRK09739 hypothetical protein; 39.0 68 0.0015 28.8 5.5 38 5-42 1-41 (199)
342 COG1087 GalE UDP-glucose 4-epi 38.9 2.7E+02 0.0059 27.1 9.4 82 26-136 15-119 (329)
343 PRK06904 replicative DNA helic 38.9 1.5E+02 0.0033 30.8 8.6 42 10-51 224-266 (472)
344 TIGR00640 acid_CoA_mut_C methy 38.8 2.3E+02 0.005 23.6 12.9 114 6-138 1-117 (132)
345 TIGR01286 nifK nitrogenase mol 38.6 2.5E+02 0.0055 29.5 10.2 36 94-132 426-461 (515)
346 cd02032 Bchl_like This family 38.5 50 0.0011 31.1 4.7 37 8-44 1-37 (267)
347 TIGR01918 various_sel_PB selen 38.3 50 0.0011 33.3 4.7 45 89-133 60-114 (431)
348 TIGR01917 gly_red_sel_B glycin 38.1 50 0.0011 33.3 4.6 45 89-133 60-114 (431)
349 cd01141 TroA_d Periplasmic bin 38.0 47 0.001 29.2 4.2 35 99-133 63-99 (186)
350 cd02040 NifH NifH gene encodes 37.9 52 0.0011 30.9 4.7 37 7-43 1-37 (270)
351 PRK06027 purU formyltetrahydro 37.9 2.3E+02 0.0049 27.2 9.1 103 5-132 87-193 (286)
352 COG0223 Fmt Methionyl-tRNA for 37.8 48 0.001 32.1 4.4 35 7-46 1-35 (307)
353 PRK12311 rpsB 30S ribosomal pr 37.6 3.5E+02 0.0075 26.6 10.3 31 105-135 152-184 (326)
354 PF00148 Oxidored_nitro: Nitro 37.6 1.3E+02 0.0029 30.1 7.9 94 8-132 272-365 (398)
355 TIGR02700 flavo_MJ0208 archaeo 37.5 45 0.00098 31.0 4.1 42 10-52 2-46 (234)
356 PRK00005 fmt methionyl-tRNA fo 37.5 2.9E+02 0.0062 26.8 9.9 40 96-135 69-109 (309)
357 PRK02155 ppnK NAD(+)/NADH kina 37.4 59 0.0013 31.4 5.0 54 336-419 62-119 (291)
358 PRK09219 xanthine phosphoribos 37.3 80 0.0017 28.3 5.5 42 91-132 36-79 (189)
359 PF03808 Glyco_tran_WecB: Glyc 37.1 2.8E+02 0.0062 24.2 10.3 94 24-136 37-135 (172)
360 PRK09302 circadian clock prote 36.9 2.2E+02 0.0048 29.8 9.6 100 8-116 32-141 (509)
361 COG2085 Predicted dinucleotide 36.8 56 0.0012 29.8 4.4 35 7-46 1-35 (211)
362 PRK13230 nitrogenase reductase 36.7 57 0.0012 31.0 4.8 36 7-42 1-36 (279)
363 PRK12726 flagellar biosynthesi 36.5 2.8E+02 0.0062 28.0 9.6 41 8-48 206-247 (407)
364 PLN02470 acetolactate synthase 36.4 1.4E+02 0.003 32.0 8.1 92 258-366 2-109 (585)
365 TIGR01281 DPOR_bchL light-inde 36.3 56 0.0012 30.8 4.7 35 8-42 1-35 (268)
366 PF07429 Glyco_transf_56: 4-al 36.3 4.4E+02 0.0096 26.1 12.2 83 320-418 244-332 (360)
367 PRK06731 flhF flagellar biosyn 36.3 2.9E+02 0.0064 26.3 9.4 41 7-47 75-115 (270)
368 PRK04885 ppnK inorganic polyph 36.2 59 0.0013 30.9 4.7 26 341-366 37-68 (265)
369 COG0143 MetG Methionyl-tRNA sy 36.1 59 0.0013 34.4 5.1 40 7-46 4-53 (558)
370 KOG0832 Mitochondrial/chloropl 36.1 1.6E+02 0.0034 27.2 7.0 113 17-135 90-205 (251)
371 PRK07773 replicative DNA helic 36.0 1.3E+02 0.0029 34.0 8.2 123 10-136 220-377 (886)
372 PRK08229 2-dehydropantoate 2-r 36.0 33 0.00071 33.7 3.1 34 7-45 2-35 (341)
373 PRK13194 pyrrolidone-carboxyla 35.9 81 0.0018 28.8 5.3 68 8-115 1-70 (208)
374 TIGR03881 KaiC_arch_4 KaiC dom 35.8 2.2E+02 0.0048 25.9 8.5 43 8-50 21-63 (229)
375 PF04244 DPRP: Deoxyribodipyri 35.7 52 0.0011 30.4 4.1 25 20-44 47-71 (224)
376 COG4394 Uncharacterized protei 35.5 4.1E+02 0.009 25.6 10.1 34 12-45 8-42 (370)
377 PLN02285 methionyl-tRNA formyl 35.5 2.7E+02 0.0059 27.4 9.4 41 95-135 83-124 (334)
378 PRK05636 replicative DNA helic 35.0 79 0.0017 33.1 5.8 41 10-50 268-309 (505)
379 PRK00885 phosphoribosylamine-- 34.9 1.2E+02 0.0025 30.9 7.0 87 8-131 1-91 (420)
380 PF09001 DUF1890: Domain of un 34.9 38 0.00083 28.4 2.8 89 17-133 9-101 (139)
381 PF14336 DUF4392: Domain of un 34.8 46 0.001 32.1 3.8 49 7-55 40-96 (291)
382 PRK14619 NAD(P)H-dependent gly 34.7 42 0.00092 32.5 3.6 35 6-45 3-37 (308)
383 COG0503 Apt Adenine/guanine ph 34.6 85 0.0018 27.8 5.2 38 95-132 43-82 (179)
384 PRK08006 replicative DNA helic 34.5 1.8E+02 0.0039 30.2 8.3 42 10-51 227-269 (471)
385 TIGR01662 HAD-SF-IIIA HAD-supe 34.4 2.5E+02 0.0055 22.8 8.4 22 24-45 30-51 (132)
386 COG2910 Putative NADH-flavin r 34.3 35 0.00076 30.5 2.6 35 8-46 1-35 (211)
387 PRK05234 mgsA methylglyoxal sy 33.9 2.9E+02 0.0064 23.4 8.6 97 7-133 4-113 (142)
388 cd01120 RecA-like_NTPases RecA 33.8 2.7E+02 0.0059 23.0 9.8 40 10-49 2-41 (165)
389 TIGR01007 eps_fam capsular exo 33.7 75 0.0016 28.4 4.9 37 8-44 17-55 (204)
390 PRK13185 chlL protochlorophyll 33.6 63 0.0014 30.5 4.6 34 10-43 5-38 (270)
391 COG2120 Uncharacterized protei 33.5 66 0.0014 29.9 4.6 39 5-43 8-46 (237)
392 TIGR02113 coaC_strep phosphopa 33.5 41 0.00089 29.8 3.0 42 9-51 2-43 (177)
393 KOG1250 Threonine/serine dehyd 33.5 5.2E+02 0.011 26.1 13.9 58 348-420 252-317 (457)
394 PRK08125 bifunctional UDP-gluc 33.4 3.9E+02 0.0085 29.0 11.2 40 96-135 66-106 (660)
395 PLN02929 NADH kinase 33.2 64 0.0014 31.2 4.4 63 342-420 67-138 (301)
396 PRK08462 biotin carboxylase; V 33.2 4E+02 0.0086 27.2 10.7 99 6-131 3-106 (445)
397 PRK08591 acetyl-CoA carboxylas 33.0 3E+02 0.0065 28.2 9.8 98 7-132 2-105 (451)
398 TIGR02195 heptsyl_trn_II lipop 33.0 2.7E+02 0.0059 27.0 9.1 96 251-365 173-276 (334)
399 PRK13235 nifH nitrogenase redu 32.9 72 0.0016 30.2 4.8 36 7-42 1-36 (274)
400 PRK12921 2-dehydropantoate 2-r 32.8 60 0.0013 31.2 4.4 32 8-44 1-32 (305)
401 PRK00039 ruvC Holliday junctio 32.7 1E+02 0.0022 26.9 5.3 50 86-135 42-106 (164)
402 PRK13193 pyrrolidone-carboxyla 32.7 1.1E+02 0.0023 28.0 5.6 68 8-115 1-70 (209)
403 PRK13604 luxD acyl transferase 32.5 80 0.0017 30.7 5.0 37 6-42 35-71 (307)
404 PF05728 UPF0227: Uncharacteri 32.5 97 0.0021 27.7 5.2 43 94-136 46-91 (187)
405 PRK12475 thiamine/molybdopteri 32.4 2.1E+02 0.0046 28.2 8.1 34 6-44 23-57 (338)
406 PRK14092 2-amino-4-hydroxy-6-h 32.3 92 0.002 27.2 4.9 32 251-282 6-37 (163)
407 PRK12743 oxidoreductase; Provi 32.2 2.4E+02 0.0053 25.9 8.3 32 9-43 3-34 (256)
408 TIGR00521 coaBC_dfp phosphopan 32.1 56 0.0012 33.0 4.0 47 6-53 2-48 (390)
409 cd07035 TPP_PYR_POX_like Pyrim 31.9 1.5E+02 0.0033 25.0 6.3 27 341-367 61-93 (155)
410 PF10163 EnY2: Transcription f 31.9 60 0.0013 24.9 3.3 49 406-461 16-64 (86)
411 TIGR02699 archaeo_AfpA archaeo 31.8 60 0.0013 28.7 3.7 34 18-51 9-44 (174)
412 PF01695 IstB_IS21: IstB-like 31.4 60 0.0013 28.7 3.7 45 6-50 46-90 (178)
413 PRK03767 NAD(P)H:quinone oxido 31.2 81 0.0018 28.4 4.6 38 7-44 1-40 (200)
414 PRK11064 wecC UDP-N-acetyl-D-m 31.0 52 0.0011 33.5 3.7 35 5-44 1-35 (415)
415 cd01981 Pchlide_reductase_B Pc 30.9 72 0.0016 32.6 4.7 36 95-133 360-395 (430)
416 CHL00076 chlB photochlorophyll 30.7 68 0.0015 33.7 4.5 36 95-133 364-399 (513)
417 PRK13768 GTPase; Provisional 30.6 1E+02 0.0022 28.9 5.4 37 9-45 4-40 (253)
418 cd01976 Nitrogenase_MoFe_alpha 30.6 61 0.0013 33.1 4.1 36 95-133 359-394 (421)
419 PRK02231 ppnK inorganic polyph 30.5 63 0.0014 30.8 3.9 60 330-419 35-98 (272)
420 PLN02939 transferase, transfer 30.3 85 0.0018 35.5 5.3 41 5-45 479-525 (977)
421 PF03693 RHH_2: Uncharacterise 30.1 1.3E+02 0.0027 22.8 4.7 49 407-462 31-79 (80)
422 PF02702 KdpD: Osmosensitive K 29.8 86 0.0019 28.4 4.3 38 7-44 5-42 (211)
423 COG2159 Predicted metal-depend 29.8 1.4E+02 0.0031 28.7 6.3 93 240-355 116-210 (293)
424 PF02016 Peptidase_S66: LD-car 29.8 59 0.0013 31.2 3.6 73 265-367 46-120 (284)
425 PRK10916 ADP-heptose:LPS hepto 29.7 3.5E+02 0.0076 26.5 9.3 99 251-365 179-286 (348)
426 PRK06522 2-dehydropantoate 2-r 29.6 63 0.0014 30.9 3.9 32 8-44 1-32 (304)
427 PRK14077 pnk inorganic polypho 29.1 80 0.0017 30.4 4.4 54 336-419 63-120 (287)
428 TIGR01744 XPRTase xanthine pho 29.0 1.3E+02 0.0028 27.0 5.5 42 91-132 36-79 (191)
429 TIGR01278 DPOR_BchB light-inde 28.9 84 0.0018 33.0 4.9 35 96-133 355-389 (511)
430 PLN02935 Bifunctional NADH kin 28.8 92 0.002 32.4 4.9 53 340-420 263-319 (508)
431 cd01394 radB RadB. The archaea 28.8 4.3E+02 0.0093 23.7 11.4 36 10-45 22-57 (218)
432 PRK12823 benD 1,6-dihydroxycyc 28.8 3.3E+02 0.0072 25.0 8.6 21 24-44 21-41 (260)
433 PF02571 CbiJ: Precorrin-6x re 28.7 2.3E+02 0.0051 26.6 7.3 102 23-132 117-225 (249)
434 cd00316 Oxidoreductase_nitroge 28.7 3.1E+02 0.0068 27.4 8.9 37 94-133 337-373 (399)
435 PRK11780 isoprenoid biosynthes 28.7 1.1E+02 0.0025 28.0 5.1 39 7-45 1-43 (217)
436 PRK00094 gpsA NAD(P)H-dependen 28.6 55 0.0012 31.8 3.3 33 7-44 1-33 (325)
437 PRK09435 membrane ATPase/prote 28.6 4E+02 0.0087 26.2 9.2 41 7-47 56-96 (332)
438 PRK04539 ppnK inorganic polyph 28.4 1.2E+02 0.0026 29.3 5.5 57 333-419 64-124 (296)
439 TIGR03445 mycothiol_MshB 1D-my 28.4 1.6E+02 0.0036 28.2 6.4 20 92-111 110-129 (284)
440 cd00501 Peptidase_C15 Pyroglut 28.3 1.6E+02 0.0035 26.3 6.0 69 8-116 1-71 (194)
441 PRK06835 DNA replication prote 28.2 70 0.0015 31.4 3.9 44 8-51 184-227 (329)
442 PLN02735 carbamoyl-phosphate s 28.2 4.2E+02 0.0092 30.9 10.6 39 7-45 23-67 (1102)
443 TIGR01761 thiaz-red thiazoliny 28.2 3.8E+02 0.0083 26.5 9.1 62 327-388 52-120 (343)
444 COG2086 FixA Electron transfer 28.1 1.1E+02 0.0023 29.1 4.9 42 93-134 99-146 (260)
445 cd01425 RPS2 Ribosomal protein 28.1 4.4E+02 0.0094 23.5 10.3 32 104-135 126-159 (193)
446 PRK13982 bifunctional SbtC-lik 28.0 74 0.0016 33.0 4.2 46 7-53 70-115 (475)
447 TIGR01369 CPSaseII_lrg carbamo 28.0 4.2E+02 0.0091 30.7 10.6 98 6-132 553-659 (1050)
448 PRK07178 pyruvate carboxylase 28.0 3.5E+02 0.0077 28.0 9.3 99 7-132 2-104 (472)
449 PF02558 ApbA: Ketopantoate re 27.9 75 0.0016 26.8 3.7 29 25-53 11-39 (151)
450 cd02034 CooC The accessory pro 27.8 1.4E+02 0.003 24.3 5.0 37 9-45 1-37 (116)
451 cd01452 VWA_26S_proteasome_sub 27.8 3.7E+02 0.0081 24.0 8.1 62 8-70 108-173 (187)
452 TIGR01861 ANFD nitrogenase iro 27.7 5.9E+02 0.013 26.8 10.8 31 99-132 392-422 (513)
453 TIGR00313 cobQ cobyric acid sy 27.7 6.7E+02 0.015 26.0 11.2 27 17-43 9-35 (475)
454 cd01714 ETF_beta The electron 27.7 94 0.002 28.1 4.4 41 92-132 95-141 (202)
455 PF03720 UDPG_MGDP_dh_C: UDP-g 27.6 66 0.0014 25.6 3.0 31 22-52 17-47 (106)
456 COG0240 GpsA Glycerol-3-phosph 27.6 76 0.0016 31.1 3.9 34 7-45 1-34 (329)
457 PF07991 IlvN: Acetohydroxy ac 27.6 60 0.0013 28.3 2.9 36 6-46 3-38 (165)
458 TIGR00514 accC acetyl-CoA carb 27.3 4.6E+02 0.0099 26.9 9.9 97 7-132 2-105 (449)
459 PRK12827 short chain dehydroge 27.3 3.3E+02 0.0072 24.6 8.3 32 7-42 6-37 (249)
460 PRK13232 nifH nitrogenase redu 26.9 1E+02 0.0022 29.1 4.7 35 8-42 2-36 (273)
461 KOG4417 Predicted endonuclease 26.8 73 0.0016 28.8 3.3 42 92-133 99-150 (261)
462 TIGR02329 propionate_PrpR prop 26.8 5.3E+02 0.012 27.2 10.3 34 99-135 139-172 (526)
463 cd01840 SGNH_hydrolase_yrhL_li 26.5 1E+02 0.0022 26.0 4.3 37 252-289 51-87 (150)
464 PRK14618 NAD(P)H-dependent gly 26.5 73 0.0016 31.1 3.7 33 7-44 4-36 (328)
465 PRK13236 nitrogenase reductase 26.4 1.3E+02 0.0029 28.9 5.4 37 7-43 6-42 (296)
466 TIGR02398 gluc_glyc_Psyn gluco 26.4 5E+02 0.011 27.1 9.9 110 323-461 364-483 (487)
467 COG0771 MurD UDP-N-acetylmuram 26.3 97 0.0021 31.9 4.6 36 7-47 7-42 (448)
468 PRK12825 fabG 3-ketoacyl-(acyl 26.2 1.3E+02 0.0029 27.2 5.3 37 5-45 4-40 (249)
469 TIGR02884 spore_pdaA delta-lac 26.1 5.1E+02 0.011 23.6 9.7 121 7-132 35-158 (224)
470 COG2327 WcaK Polysaccharide py 26.0 3E+02 0.0064 27.7 7.7 70 333-420 281-351 (385)
471 PRK04940 hypothetical protein; 25.9 1.8E+02 0.004 25.8 5.7 31 105-135 60-91 (180)
472 PRK06947 glucose-1-dehydrogena 25.9 4.3E+02 0.0094 23.9 8.8 19 25-43 16-34 (248)
473 PLN02240 UDP-glucose 4-epimera 25.8 1E+02 0.0023 30.1 4.8 33 7-43 5-37 (352)
474 PF02844 GARS_N: Phosphoribosy 25.7 1.1E+02 0.0024 24.3 3.9 38 94-131 51-91 (100)
475 PLN02293 adenine phosphoribosy 25.5 1.8E+02 0.0038 26.0 5.7 42 91-132 48-91 (187)
476 PF01497 Peripla_BP_2: Peripla 25.5 86 0.0019 28.5 3.9 38 99-136 54-93 (238)
477 PRK13810 orotate phosphoribosy 25.5 1.7E+02 0.0036 26.2 5.5 41 92-132 60-102 (187)
478 cd01147 HemV-2 Metal binding p 25.4 1E+02 0.0022 28.6 4.4 36 99-134 68-106 (262)
479 PRK06719 precorrin-2 dehydroge 25.4 1.1E+02 0.0023 26.5 4.2 34 6-44 12-45 (157)
480 PRK14569 D-alanyl-alanine synt 25.4 1.4E+02 0.0029 28.8 5.3 38 6-43 2-43 (296)
481 cd06559 Endonuclease_V Endonuc 25.3 70 0.0015 29.2 3.1 30 104-133 92-128 (208)
482 cd00861 ProRS_anticodon_short 25.3 1.2E+02 0.0027 22.9 4.2 36 8-43 2-39 (94)
483 PF13450 NAD_binding_8: NAD(P) 25.3 78 0.0017 22.8 2.8 22 24-45 8-29 (68)
484 PRK12815 carB carbamoyl phosph 25.1 3.9E+02 0.0084 31.1 9.7 98 6-132 554-660 (1068)
485 PRK05541 adenylylsulfate kinas 25.1 4.5E+02 0.0097 22.6 10.8 43 1-43 1-43 (176)
486 PRK10818 cell division inhibit 24.8 1.1E+02 0.0024 28.8 4.5 38 8-45 2-41 (270)
487 PRK04148 hypothetical protein; 24.8 1.5E+02 0.0032 25.0 4.7 32 7-44 17-48 (134)
488 PRK06128 oxidoreductase; Provi 24.8 3.4E+02 0.0073 25.8 8.0 19 25-43 69-87 (300)
489 cd01422 MGS Methylglyoxal synt 24.6 3.8E+02 0.0082 21.7 7.6 86 19-132 9-107 (115)
490 PRK08939 primosomal protein Dn 24.6 93 0.002 30.2 4.0 45 8-52 157-201 (306)
491 TIGR01380 glut_syn glutathione 24.5 1E+02 0.0022 30.0 4.3 39 8-46 1-42 (312)
492 PRK06079 enoyl-(acyl carrier p 24.5 1.2E+02 0.0026 28.1 4.7 40 1-43 1-41 (252)
493 COG1036 Archaeal flavoproteins 24.4 1.3E+02 0.0027 26.3 4.1 50 1-51 1-54 (187)
494 PF02776 TPP_enzyme_N: Thiamin 24.4 2.1E+02 0.0046 24.8 6.0 28 340-367 65-98 (172)
495 COG2210 Peroxiredoxin family p 24.3 1.4E+02 0.0031 25.1 4.4 42 11-52 7-48 (137)
496 cd07038 TPP_PYR_PDC_IPDC_like 24.2 2.6E+02 0.0057 24.1 6.5 27 340-366 60-92 (162)
497 TIGR02012 tigrfam_recA protein 24.2 1.4E+02 0.003 29.3 5.0 38 10-47 58-95 (321)
498 cd00672 CysRS_core catalytic c 24.1 3.8E+02 0.0081 24.5 7.7 92 16-132 34-132 (213)
499 PLN02331 phosphoribosylglycina 24.0 3.5E+02 0.0075 24.6 7.3 40 95-134 68-108 (207)
500 CHL00175 minD septum-site dete 24.0 1.3E+02 0.0029 28.5 4.9 39 6-44 13-53 (281)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=7.6e-62 Score=494.39 Aligned_cols=448 Identities=47% Similarity=0.820 Sum_probs=332.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCC---CCCC--CCCC
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLP---DDIE--IPDT 80 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~--~~~~ 80 (464)
++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.........++..++++.+|+| +++. ....
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcccc
Confidence 4579999999999999999999999999999999999998765555432211111234889999876 3443 1110
Q ss_pred ------CCcccHHHHHhhhHHHHHHhhhh--CCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCC
Q 048562 81 ------DMSATPRTDTSMLQEPLKSLLVD--SRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPH 152 (464)
Q Consensus 81 ------~~~~~~~~~~~~~~~~l~~~l~~--~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 152 (464)
.....+......+.+.+.++|++ .++++||+|.+++|+..+|+.+|||.+.|++.+++....+.+.....+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~ 166 (491)
T PLN02534 87 DTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAH 166 (491)
T ss_pred ccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhccc
Confidence 11122333444566788888875 4689999999999999999999999999999988877665443222221
Q ss_pred CCCCCCCCceecCCCCCccc-----cCh--------hh----hhh-hccccEEEEcCccccChHHHHHHHhhhCCCCeEE
Q 048562 153 EKVSSDYEPFVVPGLPDKIE-----LTA--------LS----FRF-EEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWF 214 (464)
Q Consensus 153 ~~~~~~~~~~~~p~~~~~~~-----~~~--------~~----~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~ 214 (464)
.....+..++.+|+++.... ++. .. +.. ....+++++|||.+||+.+++.++..+ +++++.
T Consensus 167 ~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~-~~~v~~ 245 (491)
T PLN02534 167 LSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAI-KKKVWC 245 (491)
T ss_pred ccCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhc-CCcEEE
Confidence 11222223455677653111 110 00 111 224569999999999999999887766 678999
Q ss_pred eCcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCC
Q 048562 215 VGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQS 294 (464)
Q Consensus 215 vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~ 294 (464)
|||+............++......++++.+|||.++++++|||||||......+++.+++.+|+.++++|||+++..
T Consensus 246 VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~--- 322 (491)
T PLN02534 246 VGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTG--- 322 (491)
T ss_pred ECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecC---
Confidence 99996432111011111111111235688999999888999999999999999999999999999999999999742
Q ss_pred CCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchh
Q 048562 295 PGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSN 374 (464)
Q Consensus 295 ~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~n 374 (464)
...++.....+|++|.++.. +.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 323 ---~~~~~~~~~~~p~gf~~~~~--~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~n 397 (491)
T PLN02534 323 ---EKHSELEEWLVKENFEERIK--GRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLN 397 (491)
T ss_pred ---ccccchhhhcCchhhHHhhc--cCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHH
Confidence 00000011136889988876 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEEeccccccCCCCCCC--CccChHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 048562 375 EKLISDVLKIGVKVGSVNWVSWSTEPS--AAVGRDKVEVAVKRLMGT-GEEAAEMRRRAGELGEKAKNAVEEGGSSFIDA 451 (464)
Q Consensus 375 a~~v~~~~G~G~~l~~~~~~~~~~~~~--~~~~~~~l~~ai~~il~~-~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~ 451 (464)
|+++++.+|+|+++....+.+++...+ ..+++++|.++|+++|.+ +++++.+|+||++|++.+++++.+||||..++
T Consensus 398 a~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl 477 (491)
T PLN02534 398 EKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINL 477 (491)
T ss_pred HHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999988999999985431112221111 148999999999999973 46788999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 048562 452 EALLQELKSVS 462 (464)
Q Consensus 452 ~~l~~~~~~~~ 462 (464)
++|++++++.+
T Consensus 478 ~~fv~~i~~~~ 488 (491)
T PLN02534 478 SILIQDVLKQQ 488 (491)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 2
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=3.5e-61 Score=494.21 Aligned_cols=442 Identities=49% Similarity=0.863 Sum_probs=325.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhcc--CCCCCeEEEEecCC---CCC----C
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQ--QSGLPITIKTLHLP---DDI----E 76 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~---~~~----~ 76 (464)
++.||+++|++++||++|++.||+.|+.|||+|||++++.+...+.+...... ..+..+.+..+++| +++ +
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 46899999999999999999999999999999999999988776665432210 11222344444444 222 1
Q ss_pred -CC---C--C----CCcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHH
Q 048562 77 -IP---D--T----DMSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENV 146 (464)
Q Consensus 77 -~~---~--~----~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 146 (464)
.. . . .....+......+.+.+.+++++.+||+||+|.++.|+..+|+.+|||.+.|++++++....+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~ 163 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCI 163 (482)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHH
Confidence 10 0 0 111123333455677888888888999999999999999999999999999999988877665543
Q ss_pred HhhCCCCCCCCCCCceecCCCCCccccC------------hhh-----hhhhccccEEEEcCccccChHHHHHHHhhhCC
Q 048562 147 RKYKPHEKVSSDYEPFVVPGLPDKIELT------------ALS-----FRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGN 209 (464)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~------------~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 209 (464)
....+.........+..+|++|..+.+. ... .....+.+++++|+|.+|++.+.+.+.... +
T Consensus 164 ~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~-~ 242 (482)
T PLN03007 164 RVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFV-A 242 (482)
T ss_pred HhcccccccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhcc-C
Confidence 3222211111111223456665211100 001 134567789999999999999888887665 5
Q ss_pred CCeEEeCcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEc
Q 048562 210 DKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVG 289 (464)
Q Consensus 210 ~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~ 289 (464)
.++++|||+....+.......++...+..++++.+|++..+++++|||||||+...+.+++.+++.+|+.++++|||+++
T Consensus 243 ~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~ 322 (482)
T PLN03007 243 KRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVR 322 (482)
T ss_pred CCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 68999999865322110000011111123567899999988899999999999988899999999999999999999998
Q ss_pred cCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeeccccc
Q 048562 290 KIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITA 369 (464)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~ 369 (464)
.. ... ......||++|.++.. +.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 323 ~~------~~~-~~~~~~lp~~~~~r~~--~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~ 393 (482)
T PLN03007 323 KN------ENQ-GEKEEWLPEGFEERTK--GKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGA 393 (482)
T ss_pred cC------Ccc-cchhhcCCHHHHHHhc--cCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchh
Confidence 63 100 0111238999999887 88999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 048562 370 EQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFI 449 (464)
Q Consensus 370 DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 449 (464)
||+.||+++++.+++|+.+....... -....+++++|+++|+++|.| +++++||+||+++++.+++++.+|||+..
T Consensus 394 DQ~~na~~~~~~~~~G~~~~~~~~~~---~~~~~~~~~~l~~av~~~m~~-~~~~~~r~~a~~~~~~a~~a~~~gGsS~~ 469 (482)
T PLN03007 394 EQFYNEKLVTQVLRTGVSVGAKKLVK---VKGDFISREKVEKAVREVIVG-EEAEERRLRAKKLAEMAKAAVEEGGSSFN 469 (482)
T ss_pred hhhhhHHHHHHhhcceeEeccccccc---cccCcccHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999855567776653210000 001258999999999999987 46889999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 048562 450 DAEALLQELKSV 461 (464)
Q Consensus 450 ~~~~l~~~~~~~ 461 (464)
++++|++++++.
T Consensus 470 ~l~~~v~~~~~~ 481 (482)
T PLN03007 470 DLNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHHhc
Confidence 999999999863
No 3
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.3e-60 Score=479.18 Aligned_cols=419 Identities=27% Similarity=0.429 Sum_probs=316.6
Q ss_pred CCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCC---
Q 048562 1 MDSKSSPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEI--- 77 (464)
Q Consensus 1 m~~~~~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--- 77 (464)
|+....+.||+++|++++||++|++.||+.|+.+|+.|||++++.+... .. . ...++.+..+| +++.-
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~-~----~~~~i~~~~ip--~glp~~~~ 71 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS-D----DFTDFQFVTIP--ESLPESDF 71 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc-c----CCCCeEEEeCC--CCCCcccc
Confidence 7766678899999999999999999999999999999999999866421 11 0 01247777765 33321
Q ss_pred CCCCCcccHHHHH-hhhHHHHHHhhhh------CCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhC
Q 048562 78 PDTDMSATPRTDT-SMLQEPLKSLLVD------SRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYK 150 (464)
Q Consensus 78 ~~~~~~~~~~~~~-~~~~~~l~~~l~~------~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 150 (464)
.... ...+.... ..+...+.++|++ .++++||+|.+.+|+..+|+.+|||.+.+++.+++.+..+.+.....
T Consensus 72 ~~~~-~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 150 (451)
T PLN02410 72 KNLG-PIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLY 150 (451)
T ss_pred cccC-HHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHH
Confidence 1111 11222222 2345555555543 25799999999999999999999999999999988876665432211
Q ss_pred ------CCCCCCCCCCceecCCCCCc--cccC------hhh----h---hhhccccEEEEcCccccChHHHHHHHhhhCC
Q 048562 151 ------PHEKVSSDYEPFVVPGLPDK--IELT------ALS----F---RFEEKSFGIVVNSFYDLEPAYVEYFKQDLGN 209 (464)
Q Consensus 151 ------~~~~~~~~~~~~~~p~~~~~--~~~~------~~~----~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 209 (464)
+..... ......+|+++.. ..+. ... + ....+++++++|+|++||+.++++++... +
T Consensus 151 ~~~~~~~~~~~~-~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~-~ 228 (451)
T PLN02410 151 ANNVLAPLKEPK-GQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNTVDKRTASSVIINTASCLESSSLSRLQQQL-Q 228 (451)
T ss_pred hccCCCCccccc-cCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHHhhcccCCEEEEeChHHhhHHHHHHHHhcc-C
Confidence 111100 1122235554320 0010 000 1 12356789999999999999999988766 6
Q ss_pred CCeEEeCcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEc
Q 048562 210 DKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVG 289 (464)
Q Consensus 210 ~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~ 289 (464)
++++.|||+....... . ..+..++++.+|||.++++++|||||||....+.+++.+++.+|+.++++|||+++
T Consensus 229 ~~v~~vGpl~~~~~~~-~------~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r 301 (451)
T PLN02410 229 IPVYPIGPLHLVASAP-T------SLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIR 301 (451)
T ss_pred CCEEEecccccccCCC-c------cccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEc
Confidence 7899999996532110 0 00112345789999988889999999999999999999999999999999999997
Q ss_pred cCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeeccccc
Q 048562 290 KIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITA 369 (464)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~ 369 (464)
.. + ... .+....||++|.+++ ++|.++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 302 ~~----~-~~~-~~~~~~lp~~f~er~---~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~ 372 (451)
T PLN02410 302 PG----S-VRG-SEWIESLPKEFSKII---SGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSS 372 (451)
T ss_pred cC----c-ccc-cchhhcCChhHHHhc---cCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccc
Confidence 42 0 000 011123899999987 56778889999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 048562 370 EQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFI 449 (464)
Q Consensus 370 DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 449 (464)
||+.||+++++.+|+|+.+.. .+++++|+++|+++|.+++ +++|++||++|++++++++++|||+..
T Consensus 373 DQ~~na~~~~~~~~~G~~~~~------------~~~~~~v~~av~~lm~~~~-~~~~r~~a~~l~~~~~~a~~~gGsS~~ 439 (451)
T PLN02410 373 DQKVNARYLECVWKIGIQVEG------------DLDRGAVERAVKRLMVEEE-GEEMRKRAISLKEQLRASVISGGSSHN 439 (451)
T ss_pred cCHHHHHHHHHHhCeeEEeCC------------cccHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 999999999645599999973 6899999999999998754 889999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 048562 450 DAEALLQELKS 460 (464)
Q Consensus 450 ~~~~l~~~~~~ 460 (464)
++++|+++++.
T Consensus 440 ~l~~fv~~~~~ 450 (451)
T PLN02410 440 SLEEFVHFMRT 450 (451)
T ss_pred HHHHHHHHHHh
Confidence 99999999874
No 4
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.4e-60 Score=481.15 Aligned_cols=432 Identities=34% Similarity=0.591 Sum_probs=324.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCC------CCC-CC
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPD------DIE-IP 78 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~-~~ 78 (464)
.+.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+..... ...+++++.+|+|+ +.+ ..
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~----~~~~i~~~~lp~P~~~~lPdG~~~~~ 83 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS----KHPSIETLVLPFPSHPSIPSGVENVK 83 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc----cCCCeeEEeCCCCCcCCCCCCCcChh
Confidence 57999999999999999999999999999999999999988766554311 11257777777653 222 11
Q ss_pred C--CCCcccHHHHHhhhHHHHHHhhhh--CCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCC
Q 048562 79 D--TDMSATPRTDTSMLQEPLKSLLVD--SRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEK 154 (464)
Q Consensus 79 ~--~~~~~~~~~~~~~~~~~l~~~l~~--~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~ 154 (464)
. ......+......+.+.+.++|++ .++++||+|.+.+|+..+|+.+|||++.|++++++.+..+.+.....+...
T Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~ 163 (477)
T PLN02863 84 DLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKI 163 (477)
T ss_pred hcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccccc
Confidence 1 011223444555567777777776 467999999999999999999999999999999999888776543222110
Q ss_pred -CCCCCCce---ecCCCCCc--------cc-c-Ch----h----hhhhhccccEEEEcCccccChHHHHHHHhhhCCCCe
Q 048562 155 -VSSDYEPF---VVPGLPDK--------IE-L-TA----L----SFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKA 212 (464)
Q Consensus 155 -~~~~~~~~---~~p~~~~~--------~~-~-~~----~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v 212 (464)
......+. .+|+++.. .. . .. . .+.......++++|+|++||+.+++.++..++.+++
T Consensus 164 ~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~v 243 (477)
T PLN02863 164 NPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHDRV 243 (477)
T ss_pred cccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCCCe
Confidence 00111111 24544320 00 0 00 0 012234567899999999999999998876622689
Q ss_pred EEeCcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCC
Q 048562 213 WFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIF 292 (464)
Q Consensus 213 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~ 292 (464)
+.|||+............++......++++.+||+.++++++|||||||+...+.+++.+++.+|+.++++|||+++..
T Consensus 244 ~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~- 322 (477)
T PLN02863 244 WAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEP- 322 (477)
T ss_pred EEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCC-
Confidence 9999997532110000011111111346799999998888999999999999999999999999999999999999753
Q ss_pred CCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccc
Q 048562 293 QSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQF 372 (464)
Q Consensus 293 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~ 372 (464)
....... ..+|++|.++.. +.|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 323 -----~~~~~~~-~~lp~~~~~r~~--~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~ 394 (477)
T PLN02863 323 -----VNEESDY-SNIPSGFEDRVA--GRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQF 394 (477)
T ss_pred -----cccccch-hhCCHHHHHHhc--cCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccch
Confidence 0000011 138889988887 78999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 048562 373 SNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAE 452 (464)
Q Consensus 373 ~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~ 452 (464)
.||+++++++|+|+++... ..+..+.+++.++|++++.+ ++.||+||++|++.+++|+++|||+..+++
T Consensus 395 ~na~~v~~~~gvG~~~~~~--------~~~~~~~~~v~~~v~~~m~~---~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~ 463 (477)
T PLN02863 395 VNASLLVDELKVAVRVCEG--------ADTVPDSDELARVFMESVSE---NQVERERAKELRRAALDAIKERGSSVKDLD 463 (477)
T ss_pred hhHHHHHHhhceeEEeccC--------CCCCcCHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 9999975578999999532 00246899999999999942 248999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 048562 453 ALLQELKSV 461 (464)
Q Consensus 453 ~l~~~~~~~ 461 (464)
+|+++++..
T Consensus 464 ~~v~~i~~~ 472 (477)
T PLN02863 464 GFVKHVVEL 472 (477)
T ss_pred HHHHHHHHh
Confidence 999999864
No 5
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=4.7e-60 Score=479.44 Aligned_cols=427 Identities=30% Similarity=0.475 Sum_probs=323.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCC-C-CCC
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFA-AHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIP-D-TDM 82 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~-~~~ 82 (464)
.+.||+++|++++||++|++.||+.|+ .+|++|||++++.+...+.+.... ..++.++.+|.|+.-.++ . ...
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~----~~~i~~~~lp~p~~~glp~~~~~~ 79 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLN----STGVDIVGLPSPDISGLVDPSAHV 79 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcccc----CCCceEEECCCccccCCCCCCccH
Confidence 467999999999999999999999998 789999999999776544332111 125888888865421122 1 111
Q ss_pred cccHHHHHhhhHHHHHHhhhh--CCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCC--CCC
Q 048562 83 SATPRTDTSMLQEPLKSLLVD--SRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKV--SSD 158 (464)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~--~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 158 (464)
...+......+.+.+++++++ .+|++||+|.+.+|+..+|+.+|||++.+++++++.+..+.+.+........ ..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~ 159 (481)
T PLN02992 80 VTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTVQ 159 (481)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccccC
Confidence 112222333456778888876 3789999999999999999999999999999988877665554321111000 001
Q ss_pred CCceecCCCCCc--cccC------h--------hhhhhhccccEEEEcCccccChHHHHHHHhh--hC---CCCeEEeCc
Q 048562 159 YEPFVVPGLPDK--IELT------A--------LSFRFEEKSFGIVVNSFYDLEPAYVEYFKQD--LG---NDKAWFVGP 217 (464)
Q Consensus 159 ~~~~~~p~~~~~--~~~~------~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~---~~~v~~vGp 217 (464)
..+..+|+++.. ..+. . +.+....+.+++++|||.+||+.+++.++.. .+ +++++.|||
T Consensus 160 ~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~VGP 239 (481)
T PLN02992 160 RKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPIGP 239 (481)
T ss_pred CCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceEEecC
Confidence 123445655420 0011 0 0124456788999999999999999887642 10 257999999
Q ss_pred ccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCC-C--
Q 048562 218 VSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQ-S-- 294 (464)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~-~-- 294 (464)
+...... ...++++.+|||.++++++|||||||+...+.+++.+++.+|+.++++|||++..... +
T Consensus 240 l~~~~~~-----------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~ 308 (481)
T PLN02992 240 LCRPIQS-----------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSAC 308 (481)
T ss_pred ccCCcCC-----------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccc
Confidence 9653210 1134568899999888899999999999999999999999999999999999964200 0
Q ss_pred ------CCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccc
Q 048562 295 ------PGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPIT 368 (464)
Q Consensus 295 ------~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~ 368 (464)
+.+... ++..+.+|++|.+++. ..|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|++
T Consensus 309 ~~~~~~~~~~~~-~~~~~~lp~~f~eR~~--~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~ 385 (481)
T PLN02992 309 SAYFSANGGETR-DNTPEYLPEGFVSRTH--DRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLF 385 (481)
T ss_pred cccccCcccccc-cchhhhCCHHHHHHhc--CCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCcc
Confidence 000000 0112248999999988 8899999999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh--cCCC
Q 048562 369 AEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVE--EGGS 446 (464)
Q Consensus 369 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~--~gg~ 446 (464)
+||+.||+++++++|+|+.++.. ++.++.++|.++|+++|.++ +++.|+++++++++.+++|+. +|||
T Consensus 386 ~DQ~~na~~~~~~~g~gv~~~~~---------~~~~~~~~l~~av~~vm~~~-~g~~~r~~a~~~~~~a~~Av~~~~GGS 455 (481)
T PLN02992 386 AEQNMNAALLSDELGIAVRSDDP---------KEVISRSKIEALVRKVMVEE-EGEEMRRKVKKLRDTAEMSLSIDGGGV 455 (481)
T ss_pred chhHHHHHHHHHHhCeeEEecCC---------CCcccHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 99999999984599999999753 12589999999999999874 788999999999999999994 5999
Q ss_pred cHHHHHHHHHHHHh
Q 048562 447 SFIDAEALLQELKS 460 (464)
Q Consensus 447 ~~~~~~~l~~~~~~ 460 (464)
|..++++|++++++
T Consensus 456 S~~~l~~~v~~~~~ 469 (481)
T PLN02992 456 AHESLCRVTKECQR 469 (481)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999999876
No 6
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.8e-59 Score=476.41 Aligned_cols=439 Identities=28% Similarity=0.450 Sum_probs=321.7
Q ss_pred CCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh--h-hhc-cCCCC-CeEEEEecCCCCC
Q 048562 1 MDSKSSPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS--I-NRN-QQSGL-PITIKTLHLPDDI 75 (464)
Q Consensus 1 m~~~~~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~--~-~~~-~~~g~-~~~~~~~~~~~~~ 75 (464)
|++.....||+++|+|++||++|++.||+.|+.+|..|||++++.+...+.+. . ... ...+. .+.+.. +|+++
T Consensus 1 ~~~~~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~--~pdgl 78 (480)
T PLN02555 1 MESESSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEF--FEDGW 78 (480)
T ss_pred CCCCCCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEee--CCCCC
Confidence 77777789999999999999999999999999999999999999766554421 1 000 00111 133433 34444
Q ss_pred C--CCCCCCcccHHHHHh-hhHHHHHHhhhh----CCC-CEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHH
Q 048562 76 E--IPDTDMSATPRTDTS-MLQEPLKSLLVD----SRP-DCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVR 147 (464)
Q Consensus 76 ~--~~~~~~~~~~~~~~~-~~~~~l~~~l~~----~~p-D~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 147 (464)
. .........+...+. .+...+.++|++ .+| ++||+|.+..|+..+|+++|||.+.+++.+++....+.+..
T Consensus 79 p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 79 AEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred CCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh
Confidence 2 111111122333332 345666666653 244 99999999999999999999999999999988887766553
Q ss_pred hhC-CCCCCCCCCCceecCCCCC--------cccc--Ch--------hhhhhhccccEEEEcCccccChHHHHHHHhhhC
Q 048562 148 KYK-PHEKVSSDYEPFVVPGLPD--------KIEL--TA--------LSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLG 208 (464)
Q Consensus 148 ~~~-~~~~~~~~~~~~~~p~~~~--------~~~~--~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 208 (464)
... +......+..++.+|++|. .... .. ..+....+.+++++|+|.+||+.+++.+....
T Consensus 159 ~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~- 237 (480)
T PLN02555 159 HGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKLC- 237 (480)
T ss_pred hcCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhCC-
Confidence 210 1111111112345666652 0100 00 01244567889999999999999998886543
Q ss_pred CCCeEEeCcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEE
Q 048562 209 NDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVV 288 (464)
Q Consensus 209 ~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~ 288 (464)
+ ++.|||+......... ..+...+..++++.+||+.++++++|||||||+...+.+++.+++.+|+..+++|||++
T Consensus 238 -~-v~~iGPl~~~~~~~~~--~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~ 313 (480)
T PLN02555 238 -P-IKPVGPLFKMAKTPNS--DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVM 313 (480)
T ss_pred -C-EEEeCcccCccccccc--cccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEE
Confidence 3 9999998653211100 00000012356799999998888999999999999999999999999999999999998
Q ss_pred ccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccc
Q 048562 289 GKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPIT 368 (464)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~ 368 (464)
+.. ..........||+++.++. ++|+.+.+|+||.+||.|+++++|||||||||++||+++|||||++|++
T Consensus 314 ~~~------~~~~~~~~~~lp~~~~~~~---~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~ 384 (480)
T PLN02555 314 RPP------HKDSGVEPHVLPEEFLEKA---GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQW 384 (480)
T ss_pred ecC------cccccchhhcCChhhhhhc---CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCc
Confidence 742 0000000123788888776 5678889999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 048562 369 AEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSF 448 (464)
Q Consensus 369 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~ 448 (464)
+||+.||+++++.+|+|+.+... +...+.+++++|.++|+++|.+ ++++.+|+||++|++.+++|+++|||+.
T Consensus 385 ~DQ~~Na~~~~~~~gvGv~l~~~------~~~~~~v~~~~v~~~v~~vm~~-~~g~~~r~ra~~l~~~a~~A~~egGSS~ 457 (480)
T PLN02555 385 GDQVTDAVYLVDVFKTGVRLCRG------EAENKLITREEVAECLLEATVG-EKAAELKQNALKWKEEAEAAVAEGGSSD 457 (480)
T ss_pred cccHHHHHHHHHHhCceEEccCC------ccccCcCcHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 99999999997556999999531 0001268999999999999986 5688999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 048562 449 IDAEALLQELKSVS 462 (464)
Q Consensus 449 ~~~~~l~~~~~~~~ 462 (464)
.++++||+++.+.+
T Consensus 458 ~~l~~~v~~i~~~~ 471 (480)
T PLN02555 458 RNFQEFVDKLVRKS 471 (480)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998764
No 7
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.2e-59 Score=474.78 Aligned_cols=407 Identities=23% Similarity=0.378 Sum_probs=313.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCC--CCCC--CCCC-C
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLP--DDIE--IPDT-D 81 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~--~~~~-~ 81 (464)
+.||+++|++++||++|++.||+.|+++||+|||++++.+...+.+... .+..+.+..+++| +++. .... .
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a----~~~~i~~~~l~~p~~dgLp~g~~~~~~ 79 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL----FPDSIVFHPLTIPPVNGLPAGAETTSD 79 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC----CCCceEEEEeCCCCccCCCCCcccccc
Confidence 6899999999999999999999999999999999999877666544310 1124667766654 4433 1111 1
Q ss_pred C----cccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCC
Q 048562 82 M----SATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSS 157 (464)
Q Consensus 82 ~----~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (464)
. ...+......+.+.+++++++.++|+||+| ++.|+..+|+.+|||++.++++++.... +.+... ...+
T Consensus 80 l~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~~~~- 152 (442)
T PLN02208 80 IPISMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----GKLG- 152 (442)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----cccC-
Confidence 1 112333455667888898988899999999 6789999999999999999999887543 322211 1111
Q ss_pred CCCceecCCCCCc---cc------c----C-hhh----h-hhhccccEEEEcCccccChHHHHHHHhhhCCCCeEEeCcc
Q 048562 158 DYEPFVVPGLPDK---IE------L----T-ALS----F-RFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPV 218 (464)
Q Consensus 158 ~~~~~~~p~~~~~---~~------~----~-~~~----~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp~ 218 (464)
..+|++|.. ++ + . ... + +...+.+++++|+|.+||+.+++++...+ +++++.|||+
T Consensus 153 ----~~~pglp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~-~~~v~~vGpl 227 (442)
T PLN02208 153 ----VPPPGYPSSKVLFRENDAHALATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQY-HKKVLLTGPM 227 (442)
T ss_pred ----CCCCCCCCcccccCHHHcCcccccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhc-CCCEEEEeec
Confidence 112343321 00 0 0 000 1 23557889999999999999999887766 6899999999
Q ss_pred cccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCC
Q 048562 219 SLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTR 298 (464)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~ 298 (464)
...... ...+++++.+|||.++++++|||||||....+.+++.+++.+++..+..++|++... .
T Consensus 228 ~~~~~~----------~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~------~ 291 (442)
T PLN02208 228 FPEPDT----------SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPP------R 291 (442)
T ss_pred ccCcCC----------CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCC------C
Confidence 753210 112567899999998888999999999999899999999888877888888888642 0
Q ss_pred cCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhHHHH
Q 048562 299 KENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLI 378 (464)
Q Consensus 299 ~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v 378 (464)
.. ......+|++|.+++. ..|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||+++
T Consensus 292 ~~-~~~~~~lp~~f~~r~~--~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~ 368 (442)
T PLN02208 292 GS-STVQEGLPEGFEERVK--GRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLM 368 (442)
T ss_pred cc-cchhhhCCHHHHHHHh--cCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHH
Confidence 00 0111238999999987 78999999999999999999999999999999999999999999999999999999997
Q ss_pred HhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 048562 379 SDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTG-EEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALLQE 457 (464)
Q Consensus 379 ~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~ 457 (464)
++.+|+|+.++.. .++.+++++|+++|+++|+|+ ++++.+|+|++++++.+. ++||+..++++|+++
T Consensus 369 ~~~~g~gv~~~~~--------~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~ 436 (442)
T PLN02208 369 TEEFEVSVEVSRE--------KTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEE 436 (442)
T ss_pred HHHhceeEEeccc--------cCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHH
Confidence 5459999999753 012489999999999999876 568899999999999985 578999999999999
Q ss_pred HHh
Q 048562 458 LKS 460 (464)
Q Consensus 458 ~~~ 460 (464)
++.
T Consensus 437 l~~ 439 (442)
T PLN02208 437 LQE 439 (442)
T ss_pred HHH
Confidence 965
No 8
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=7.6e-59 Score=469.78 Aligned_cols=433 Identities=26% Similarity=0.420 Sum_probs=316.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC--CcEEEEeCCcch-hhhhhhhhhccCCCCCeEEEEecCCCCCCC-C-C
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAAHG--AKSTIITSPKHA-LSFQKSINRNQQSGLPITIKTLHLPDDIEI-P-D 79 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~rG--h~Vt~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~-~ 79 (464)
|++.||+++|++++||++|++.||+.|+.+| ..|||++++.+. ..+............+++++.+|..+.... . .
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 5678999999999999999999999999998 999999988664 222221111101112588888873221111 0 1
Q ss_pred CCCcccHHHHHhhh----HHHHHHhhhhC----CC-CEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhC
Q 048562 80 TDMSATPRTDTSML----QEPLKSLLVDS----RP-DCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYK 150 (464)
Q Consensus 80 ~~~~~~~~~~~~~~----~~~l~~~l~~~----~p-D~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 150 (464)
......+...+..+ .+.+.+++++. +| ++||+|.+.+|+..+|+.+|||.+.+++.++.....+.+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~ 160 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRH 160 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcc
Confidence 11111222333233 44556665532 34 89999999999999999999999999999988877766553321
Q ss_pred -CCCCC--CCCCCceecCCCCCccc---cC--------hh----hhhhhccccEEEEcCccccChHHHHHHHhh-hCCCC
Q 048562 151 -PHEKV--SSDYEPFVVPGLPDKIE---LT--------AL----SFRFEEKSFGIVVNSFYDLEPAYVEYFKQD-LGNDK 211 (464)
Q Consensus 151 -~~~~~--~~~~~~~~~p~~~~~~~---~~--------~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 211 (464)
+.... .....++.+|+++..+. ++ .. .+....+.+++++|+|.+||+++++.+... . .++
T Consensus 161 ~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~-~p~ 239 (468)
T PLN02207 161 SKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDGYDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQN-YPS 239 (468)
T ss_pred ccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCccHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccC-CCc
Confidence 11011 01113345676621110 00 11 124466788999999999999988887542 2 378
Q ss_pred eEEeCcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccC
Q 048562 212 AWFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKI 291 (464)
Q Consensus 212 v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~ 291 (464)
++.|||+........ +......++++.+|||.++++++|||||||....+.+++.+++.+|++++++|||+++..
T Consensus 240 v~~VGPl~~~~~~~~-----~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~ 314 (468)
T PLN02207 240 VYAVGPIFDLKAQPH-----PEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTE 314 (468)
T ss_pred EEEecCCcccccCCC-----CccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 999999975321100 000001235799999998888999999999999999999999999999999999999853
Q ss_pred CCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeeccccccc
Q 048562 292 FQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQ 371 (464)
Q Consensus 292 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ 371 (464)
. ....++||++|.++. ++|..+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 315 ------~---~~~~~~lp~~f~er~---~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ 382 (468)
T PLN02207 315 ------E---VTNDDLLPEGFLDRV---SGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQ 382 (468)
T ss_pred ------C---ccccccCCHHHHhhc---CCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccc
Confidence 1 111235899998887 5677888999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 048562 372 FSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDA 451 (464)
Q Consensus 372 ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~ 451 (464)
+.||+++++.+|+|+.+... + .+. ..+.+++++|.++|+++|.+ ++++||+||++|++.+++|+++|||+..++
T Consensus 383 ~~Na~~~~~~~gvGv~~~~~-~-~~~--~~~~v~~e~i~~av~~vm~~--~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l 456 (468)
T PLN02207 383 QLNAFLMVKELKLAVELKLD-Y-RVH--SDEIVNANEIETAIRCVMNK--DNNVVRKRVMDISQMIQRATKNGGSSFAAI 456 (468)
T ss_pred hhhHHHHHHHhCceEEEecc-c-ccc--cCCcccHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999876569999988421 0 000 01246999999999999973 356999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 048562 452 EALLQELKSV 461 (464)
Q Consensus 452 ~~l~~~~~~~ 461 (464)
++|+++++..
T Consensus 457 ~~~v~~~~~~ 466 (468)
T PLN02207 457 EKFIHDVIGI 466 (468)
T ss_pred HHHHHHHHhc
Confidence 9999999764
No 9
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=8.4e-59 Score=474.41 Aligned_cols=440 Identities=28% Similarity=0.432 Sum_probs=324.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC----CcEEEEeCCcchh----hhhhhhhhccCCCCCeEEEEecCCCCCC
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAAHG----AKSTIITSPKHAL----SFQKSINRNQQSGLPITIKTLHLPDDIE 76 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~rG----h~Vt~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 76 (464)
|++.||+++|++++||++|++.||+.|+.+| +.|||++++.... .+.....+...++..+.++.+|.++ ..
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-~p 79 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE-PP 79 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC-CC
Confidence 4578999999999999999999999999997 7899999875432 2332211111112258888887442 11
Q ss_pred CCCCCCcccHHH-HHhhhHHHHHHhhhhC--CCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCC
Q 048562 77 IPDTDMSATPRT-DTSMLQEPLKSLLVDS--RPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHE 153 (464)
Q Consensus 77 ~~~~~~~~~~~~-~~~~~~~~l~~~l~~~--~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 153 (464)
+..+....+.. ....+.+.++++|.+. ++++||+|.+.+|+..+|+.+|||.+.|+++++.....+.+.+......
T Consensus 80 -~~~e~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 158 (480)
T PLN00164 80 -TDAAGVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEEV 158 (480)
T ss_pred -CccccHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhcccc
Confidence 11111222222 3345677788888764 4699999999999999999999999999999998887776654321110
Q ss_pred C--CCCCCCceecCCCCC--------ccccCh----h----hhhhhccccEEEEcCccccChHHHHHHHhhh---C--CC
Q 048562 154 K--VSSDYEPFVVPGLPD--------KIELTA----L----SFRFEEKSFGIVVNSFYDLEPAYVEYFKQDL---G--ND 210 (464)
Q Consensus 154 ~--~~~~~~~~~~p~~~~--------~~~~~~----~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~--~~ 210 (464)
. ......+..+|+++. ...... . .+....+.+++++|+|++||+.+++.++... + .+
T Consensus 159 ~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~~ 238 (480)
T PLN00164 159 AVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPGRPAP 238 (480)
T ss_pred cCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccccCCCC
Confidence 0 000012234555432 110000 0 1244567889999999999999998886531 0 15
Q ss_pred CeEEeCcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEcc
Q 048562 211 KAWFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGK 290 (464)
Q Consensus 211 ~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~ 290 (464)
+++.|||+....... . ....++++.+||+.++++++|||||||....+.+++.+++.+|+.++++|||+++.
T Consensus 239 ~v~~vGPl~~~~~~~-~-------~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~ 310 (480)
T PLN00164 239 TVYPIGPVISLAFTP-P-------AEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRG 310 (480)
T ss_pred ceEEeCCCccccccC-C-------CccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 799999997432110 0 01145679999999988899999999998889999999999999999999999975
Q ss_pred CCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccc
Q 048562 291 IFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAE 370 (464)
Q Consensus 291 ~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~D 370 (464)
....-............+|++|.+++. ..++++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++|
T Consensus 311 ~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~D 388 (480)
T PLN00164 311 PPAAGSRHPTDADLDELLPEGFLERTK--GRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAE 388 (480)
T ss_pred CcccccccccccchhhhCChHHHHHhc--CCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCcccc
Confidence 300000000000122348889999887 788889899999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 048562 371 QFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGE-EAAEMRRRAGELGEKAKNAVEEGGSSFI 449 (464)
Q Consensus 371 Q~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~-~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 449 (464)
|+.||+++++.+|+|+.+.... ..++.+++++|.++|+++|.|++ +++.+|+||++|++.+++++++|||+..
T Consensus 389 Q~~Na~~~~~~~gvG~~~~~~~------~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~ 462 (480)
T PLN00164 389 QHLNAFELVADMGVAVAMKVDR------KRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYA 462 (480)
T ss_pred chhHHHHHHHHhCeEEEecccc------ccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 9999998755789999995320 00124799999999999998876 4889999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 048562 450 DAEALLQELKSVS 462 (464)
Q Consensus 450 ~~~~l~~~~~~~~ 462 (464)
++++|++++++..
T Consensus 463 ~l~~~v~~~~~~~ 475 (480)
T PLN00164 463 ALQRLAREIRHGA 475 (480)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998754
No 10
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2e-58 Score=464.99 Aligned_cols=432 Identities=24% Similarity=0.439 Sum_probs=321.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEeCCcchhhhh--hhhhhccCCCCCeEEEEecCCCCCCC-CC-CC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAH-GAKSTIITSPKHALSFQ--KSINRNQQSGLPITIKTLHLPDDIEI-PD-TD 81 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~-~~-~~ 81 (464)
..||+++|++++||++|++.||+.|+.+ |..|||++++.....+. ....... ...++.++.+|.++.-.+ +. ..
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~~~l~~~~~~ 81 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDVDNLVEPDAT 81 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCccccCCCCCcc
Confidence 5699999999999999999999999987 99999998776543321 1111110 011488888886542112 11 12
Q ss_pred CcccHHHHHhhhHHHHHHhhhhC--CCCEEEeCCCchhhHHHHHHcCCC-eEEEeccchHHHHHHHHHHhhCCC--CCCC
Q 048562 82 MSATPRTDTSMLQEPLKSLLVDS--RPDCIVHDMFHHWSADVINSMNIP-RIVFNGNCCFSRCILENVRKYKPH--EKVS 156 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~--~pD~Vi~D~~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~~~~~~~~~~--~~~~ 156 (464)
....+......+.+.+.++|++. ++++||+|.+..|+..+|+.+||| .+.+++++++....+.+.+..... ....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~~~ 161 (470)
T PLN03015 82 IFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGEYV 161 (470)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccccccC
Confidence 22234444455677788888764 689999999999999999999999 577777777766565554322111 1000
Q ss_pred CCCCceecCCCCCc--cccC--------h------hhhhhhccccEEEEcCccccChHHHHHHHhhhC-----CCCeEEe
Q 048562 157 SDYEPFVVPGLPDK--IELT--------A------LSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLG-----NDKAWFV 215 (464)
Q Consensus 157 ~~~~~~~~p~~~~~--~~~~--------~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~v~~v 215 (464)
....++.+|+++.. ..+. . ..+....+.+|+++|+|++||+.+++.++..++ .++++.|
T Consensus 162 ~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~V 241 (470)
T PLN03015 162 DIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYPI 241 (470)
T ss_pred CCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCceEEe
Confidence 11134556776531 0111 0 012346788999999999999999988876420 2569999
Q ss_pred CcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCC
Q 048562 216 GPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSP 295 (464)
Q Consensus 216 Gp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~ 295 (464)
||+..... ....++++.+|||.++++++|||||||....+.+++.+++.+|+.++++|||+++.....-
T Consensus 242 GPl~~~~~-----------~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~ 310 (470)
T PLN03015 242 GPIVRTNV-----------HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYL 310 (470)
T ss_pred cCCCCCcc-----------cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCcccc
Confidence 99973210 0012347999999998899999999999999999999999999999999999996420000
Q ss_pred C-CCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchh
Q 048562 296 G-TRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSN 374 (464)
Q Consensus 296 ~-~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~n 374 (464)
+ ...++++....||++|.+++. ..++++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.|
T Consensus 311 ~~~~~~~~~~~~~lp~~f~er~~--~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~n 388 (470)
T PLN03015 311 GASSSDDDQVSASLPEGFLDRTR--GVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMN 388 (470)
T ss_pred ccccccccchhhcCChHHHHhhc--cCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHH
Confidence 0 000001122348999999987 7788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 048562 375 EKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGT-GEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEA 453 (464)
Q Consensus 375 a~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~-~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~ 453 (464)
|+++++.+|+|+++... ...+.+++++|.++|+++|.+ +++++.+|+||++|++..++|+++|||+..++++
T Consensus 389 a~~~~~~~gvg~~~~~~-------~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~ 461 (470)
T PLN03015 389 ATLLTEEIGVAVRTSEL-------PSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFE 461 (470)
T ss_pred HHHHHHHhCeeEEeccc-------ccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99986799999999521 001258999999999999964 3678899999999999999999999999999999
Q ss_pred HHHHHH
Q 048562 454 LLQELK 459 (464)
Q Consensus 454 l~~~~~ 459 (464)
|++++.
T Consensus 462 ~~~~~~ 467 (470)
T PLN03015 462 WAKRCY 467 (470)
T ss_pred HHHhcc
Confidence 998874
No 11
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=2.5e-58 Score=468.09 Aligned_cols=423 Identities=25% Similarity=0.399 Sum_probs=309.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHH--HHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCc
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARI--FAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMS 83 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~--L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (464)
++.||+++|++++||++|++.||+. |++||++|||++++.+.+.+..... ....+.+..+ |+++.-......
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~----~~~~~~~~~~--~~glp~~~~~~~ 80 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEK----PRRPVDLVFF--SDGLPKDDPRAP 80 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccC----CCCceEEEEC--CCCCCCCcccCH
Confidence 5689999999999999999999999 5699999999999988665533210 0113444443 344331100111
Q ss_pred ccHHHHH-hhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhh-CCCCCCCCCCCc
Q 048562 84 ATPRTDT-SMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKY-KPHEKVSSDYEP 161 (464)
Q Consensus 84 ~~~~~~~-~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 161 (464)
..+...+ ..+.+.+++++++.+||+||+|.+..|+..+|+.+|||.+.+++.++..+..+.+.... ...........+
T Consensus 81 ~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (456)
T PLN02210 81 ETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLEDLNQT 160 (456)
T ss_pred HHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccccCCe
Confidence 1233332 34567788888888899999999999999999999999999998887777665543211 111111110122
Q ss_pred eecCCCCC--ccccCh-----------h---hh-hhhccccEEEEcCccccChHHHHHHHhhhCCCCeEEeCccccccc-
Q 048562 162 FVVPGLPD--KIELTA-----------L---SF-RFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNR- 223 (464)
Q Consensus 162 ~~~p~~~~--~~~~~~-----------~---~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp~~~~~~- 223 (464)
..+|+++. ...+.. . .+ .......++++|+|.++|+.+++.++. . +++++|||+.....
T Consensus 161 ~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~--~~v~~VGPl~~~~~~ 237 (456)
T PLN02210 161 VELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L--KPVIPIGPLVSPFLL 237 (456)
T ss_pred eeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c--CCEEEEcccCchhhc
Confidence 34565541 111110 0 11 234456799999999999999988765 3 57999999864210
Q ss_pred -CcchhhhcCCCC--CCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcC
Q 048562 224 -NIEDKAERGQKT--SIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKE 300 (464)
Q Consensus 224 -~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~ 300 (464)
........+... +..++++.+|++.++++++|||||||....+.+++++++.+|+..+++|||+++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~--------- 308 (456)
T PLN02210 238 GDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPK--------- 308 (456)
T ss_pred CcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCC---------
Confidence 000000000000 12345688999998888999999999999999999999999999999999999753
Q ss_pred CcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhHHHHHh
Q 048562 301 NGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISD 380 (464)
Q Consensus 301 ~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~ 380 (464)
.. .. .+.++.++.. +++..+.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||+++++
T Consensus 309 -~~-~~-~~~~~~~~~~--~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~ 383 (456)
T PLN02210 309 -EK-AQ-NVQVLQEMVK--EGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVD 383 (456)
T ss_pred -cc-cc-chhhHHhhcc--CCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHH
Confidence 11 00 2344555442 2455678999999999999999999999999999999999999999999999999999963
Q ss_pred hhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048562 381 VLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALLQELK 459 (464)
Q Consensus 381 ~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~~~ 459 (464)
.+|+|+.+... +.++.+++++|+++|+++|.+ ++++.||+||++|++..++|+++|||+..++++|+++++
T Consensus 384 ~~g~G~~l~~~-------~~~~~~~~~~l~~av~~~m~~-~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 384 VFGIGVRMRND-------AVDGELKVEEVERCIEAVTEG-PAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HhCeEEEEecc-------ccCCcCCHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 39999999642 001258999999999999986 457789999999999999999999999999999999985
No 12
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.5e-58 Score=464.64 Aligned_cols=411 Identities=22% Similarity=0.362 Sum_probs=317.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCC--CC---C
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEI--PD---T 80 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~---~ 80 (464)
.+.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+.+. ...+.+..+.+..+|.++++.- .. .
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~~~~~~~v~~~~~p~~~glp~g~e~~~~~ 81 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NLFPHNIVFRSVTVPHVDGLPVGTETVSEI 81 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--ccCCCCceEEEEECCCcCCCCCcccccccC
Confidence 468999999999999999999999999999999999999876544431 1001112366666665555431 11 0
Q ss_pred --CCcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCC
Q 048562 81 --DMSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSD 158 (464)
Q Consensus 81 --~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (464)
.....+...+..+.+.+.++|++.++|+||+| +..|+..+|+.+|||.+.++++++..+..+.. . .....
T Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D-~~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~~~~~-- 153 (453)
T PLN02764 82 PVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFD-FAHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----GGELG-- 153 (453)
T ss_pred ChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEEC-CchhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----cccCC--
Confidence 11123444455567888888888889999999 47799999999999999999999887766542 1 11110
Q ss_pred CCceecCCCCC------------cccc----C---h-h---hh-hhhccccEEEEcCccccChHHHHHHHhhhCCCCeEE
Q 048562 159 YEPFVVPGLPD------------KIEL----T---A-L---SF-RFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWF 214 (464)
Q Consensus 159 ~~~~~~p~~~~------------~~~~----~---~-~---~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~ 214 (464)
..+|++|. ...+ . . . .+ ....+.+++++|+|.+||+.+++++.... +++++.
T Consensus 154 ---~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~-~~~v~~ 229 (453)
T PLN02764 154 ---VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHC-RKKVLL 229 (453)
T ss_pred ---CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhc-CCcEEE
Confidence 01123221 0000 0 0 0 01 34566779999999999999999887754 568999
Q ss_pred eCcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCC
Q 048562 215 VGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQS 294 (464)
Q Consensus 215 vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~ 294 (464)
|||+...... . ...++++.+|||.++++++|||||||....+.+++.+++.+|+..+.+|+|++...
T Consensus 230 VGPL~~~~~~-------~---~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~--- 296 (453)
T PLN02764 230 TGPVFPEPDK-------T---RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPP--- 296 (453)
T ss_pred eccCccCccc-------c---ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCC---
Confidence 9999643210 0 01346789999999999999999999999999999999999999999999999753
Q ss_pred CCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchh
Q 048562 295 PGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSN 374 (464)
Q Consensus 295 ~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~n 374 (464)
... .+....||++|.++++ ..++++.+|+||.+||+|+++++|||||||||++|++++|||||++|++.||+.|
T Consensus 297 ---~~~-~~~~~~lp~~f~~r~~--grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~n 370 (453)
T PLN02764 297 ---RGS-STIQEALPEGFEERVK--GRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLN 370 (453)
T ss_pred ---CCC-cchhhhCCcchHhhhc--cCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHH
Confidence 000 1112349999999987 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 048562 375 EKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTG-EEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEA 453 (464)
Q Consensus 375 a~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~ 453 (464)
|+++++.+|+|+.+... ..+.++.++|+++|+++|+++ ++++.+|+|++++++.++ +|||+..++++
T Consensus 371 a~~l~~~~g~gv~~~~~--------~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~ 438 (453)
T PLN02764 371 TRLLSDELKVSVEVARE--------ETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDN 438 (453)
T ss_pred HHHHHHHhceEEEeccc--------cCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHH
Confidence 99996468999987532 001589999999999999876 568899999999999997 78999999999
Q ss_pred HHHHHHhc
Q 048562 454 LLQELKSV 461 (464)
Q Consensus 454 l~~~~~~~ 461 (464)
|+++++..
T Consensus 439 lv~~~~~~ 446 (453)
T PLN02764 439 FIESLQDL 446 (453)
T ss_pred HHHHHHHh
Confidence 99999874
No 13
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=6.5e-58 Score=463.48 Aligned_cols=428 Identities=27% Similarity=0.442 Sum_probs=317.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCC--CCCC--C-CC
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPD--DIEI--P-DT 80 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~--~-~~ 80 (464)
.+.||+++|++++||++|++.||+.|+.||+.|||++++.+...+.+.... ....++++.+|+|+ ++.. . ..
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~---~~~~i~~~~lp~p~~dglp~~~~~~~ 81 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ---LSSSITLVSFPLPSVPGLPSSAESST 81 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc---CCCCeeEEECCCCccCCCCCCccccc
Confidence 467999999999999999999999999999999999999876555432110 11258899988763 3321 1 11
Q ss_pred CCc----ccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCC
Q 048562 81 DMS----ATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVS 156 (464)
Q Consensus 81 ~~~----~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (464)
... ..+......+.+.+.+++++.++++||+|.+..|+..+|+++|||++.++++++.....+.+...........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~ 161 (472)
T PLN02670 82 DVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLR 161 (472)
T ss_pred ccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCC
Confidence 111 1233444566788888888888999999999999999999999999999998887776654332111111110
Q ss_pred CCCCce-ecCCC--------------CCccc----cC--hh----hhhhhccccEEEEcCccccChHHHHHHHhhhCCCC
Q 048562 157 SDYEPF-VVPGL--------------PDKIE----LT--AL----SFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDK 211 (464)
Q Consensus 157 ~~~~~~-~~p~~--------------~~~~~----~~--~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 211 (464)
...... .+|++ |..+. .. .. .+....+..++++|+|++||+.+++.++... +++
T Consensus 162 ~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~~-~~~ 240 (472)
T PLN02670 162 STAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDLY-RKP 240 (472)
T ss_pred CccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHhh-CCC
Confidence 111111 12221 11010 00 00 1133556789999999999999999987765 578
Q ss_pred eEEeCcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccC
Q 048562 212 AWFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKI 291 (464)
Q Consensus 212 v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~ 291 (464)
++.|||+.......... .... . ..++++.+|||.++++++|||||||+...+.+++.+++.+|+.++++|||++...
T Consensus 241 v~~VGPl~~~~~~~~~~-~~~~-~-~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~ 317 (472)
T PLN02670 241 IIPIGFLPPVIEDDEED-DTID-V-KGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNE 317 (472)
T ss_pred eEEEecCCccccccccc-cccc-c-chhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 99999996431100000 0000 0 0125789999998888999999999999999999999999999999999999753
Q ss_pred CCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeeccccccc
Q 048562 292 FQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQ 371 (464)
Q Consensus 292 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ 371 (464)
. + .. .+..+.||++|.+++. ..++++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||
T Consensus 318 ~---~-~~--~~~~~~lp~~f~~~~~--~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ 389 (472)
T PLN02670 318 P---G-TT--QNALEMLPDGFEERVK--GRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQ 389 (472)
T ss_pred c---c-cc--cchhhcCChHHHHhcc--CCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhcc
Confidence 0 0 00 1112248999999987 7788889999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 048562 372 FSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDA 451 (464)
Q Consensus 372 ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~ 451 (464)
+.||+++ +++|+|+.++.. +.++.++.++|.++|+++|.| +++++||+||+++++.+++ . +.....+
T Consensus 390 ~~Na~~v-~~~g~Gv~l~~~-------~~~~~~~~e~i~~av~~vm~~-~~g~~~r~~a~~l~~~~~~---~-~~~~~~~ 456 (472)
T PLN02670 390 GLNTRLL-HGKKLGLEVPRD-------ERDGSFTSDSVAESVRLAMVD-DAGEEIRDKAKEMRNLFGD---M-DRNNRYV 456 (472)
T ss_pred HHHHHHH-HHcCeeEEeecc-------ccCCcCcHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHhC---c-chhHHHH
Confidence 9999999 599999999753 001258999999999999986 4677999999999999993 3 4456678
Q ss_pred HHHHHHHHhc
Q 048562 452 EALLQELKSV 461 (464)
Q Consensus 452 ~~l~~~~~~~ 461 (464)
++|++.|+.+
T Consensus 457 ~~~~~~l~~~ 466 (472)
T PLN02670 457 DELVHYLREN 466 (472)
T ss_pred HHHHHHHHHh
Confidence 8888888774
No 14
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=5.2e-58 Score=463.42 Aligned_cols=412 Identities=24% Similarity=0.391 Sum_probs=314.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCC--CCCCCC--C-C
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLP--DDIEIP--D-T 80 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~--~-~ 80 (464)
.+.||+++|++++||++|++.||+.|+++|++|||++++.+...+..... ....+.+..+++| +++... . .
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~----~~~~i~~~~i~lP~~dGLP~g~e~~~ 78 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL----FPDSIVFEPLTLPPVDGLPFGAETAS 78 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc----CCCceEEEEecCCCcCCCCCcccccc
Confidence 37899999999999999999999999999999999999887655544311 0114677666544 444311 0 0
Q ss_pred CC----cccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCC
Q 048562 81 DM----SATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVS 156 (464)
Q Consensus 81 ~~----~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (464)
.. ...+......+.+.+++++++.+||+||+|. .+|+..+|+.+|||++.|+++++.....+.+.... .+
T Consensus 79 ~l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~-----~~ 152 (446)
T PLN00414 79 DLPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE-----LG 152 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh-----cC
Confidence 11 1123444456677888888878899999994 78999999999999999999998877665542110 00
Q ss_pred CCCCceecCCCCC--------------ccc----cChhhhhhhccccEEEEcCccccChHHHHHHHhhhCCCCeEEeCcc
Q 048562 157 SDYEPFVVPGLPD--------------KIE----LTALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPV 218 (464)
Q Consensus 157 ~~~~~~~~p~~~~--------------~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp~ 218 (464)
..+|++|. .+. ...+.+....+.+++++|+|.+||+.+++.++..+ +++++.|||+
T Consensus 153 -----~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~-~~~v~~VGPl 226 (446)
T PLN00414 153 -----FPPPDYPLSKVALRGHDANVCSLFANSHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQC-QRKVLLTGPM 226 (446)
T ss_pred -----CCCCCCCCCcCcCchhhcccchhhcccHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhc-CCCeEEEccc
Confidence 01122221 000 00111244567889999999999999999887765 5689999999
Q ss_pred cccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCC
Q 048562 219 SLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTR 298 (464)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~ 298 (464)
...... .. + ...++++.+|||.++++++|||||||....+.+++.+++.+|+..+..|+|++... .
T Consensus 227 ~~~~~~-~~----~---~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~------~ 292 (446)
T PLN00414 227 LPEPQN-KS----G---KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPP------K 292 (446)
T ss_pred CCCccc-cc----C---cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecC------C
Confidence 643210 00 0 11235688999999999999999999999999999999999999999999999753 0
Q ss_pred cCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhHHHH
Q 048562 299 KENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLI 378 (464)
Q Consensus 299 ~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v 378 (464)
.. ......+|++|.++++ ..++.+.+|+||.+||+|+++++|||||||||++|++++|||||++|++.||+.||+++
T Consensus 293 ~~-~~~~~~lp~~f~~r~~--~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~ 369 (446)
T PLN00414 293 GS-STVQEALPEGFEERVK--GRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLL 369 (446)
T ss_pred Cc-ccchhhCChhHHHHhc--CCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHH
Confidence 00 0112349999999987 77888889999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 048562 379 SDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTG-EEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALLQE 457 (464)
Q Consensus 379 ~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~ 457 (464)
++.+|+|+.+... ..+.+++++|+++|+++|.|+ +.++.||++++++++.+. ++||++ ..+++|+++
T Consensus 370 ~~~~g~g~~~~~~--------~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~~v~~ 437 (446)
T PLN00414 370 TEELEVSVKVQRE--------DSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADKFVEA 437 (446)
T ss_pred HHHhCeEEEeccc--------cCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHHHHHH
Confidence 6579999999642 002489999999999999875 567889999999999975 678844 338999999
Q ss_pred HHhcc
Q 048562 458 LKSVS 462 (464)
Q Consensus 458 ~~~~~ 462 (464)
+++..
T Consensus 438 ~~~~~ 442 (446)
T PLN00414 438 LENEV 442 (446)
T ss_pred HHHhc
Confidence 97643
No 15
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.8e-58 Score=463.04 Aligned_cols=413 Identities=28% Similarity=0.450 Sum_probs=310.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCC---CCCC
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEI---PDTD 81 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~ 81 (464)
.++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...+... ...++.++.+| +++.. ....
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~------~~~~i~~~~ip--dglp~~~~~~~~ 74 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD------PSSPISIATIS--DGYDQGGFSSAG 74 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC------CCCCEEEEEcC--CCCCCccccccc
Confidence 3457999999999999999999999999999999999998765444221 12358888875 34321 1111
Q ss_pred CcccHHHHHh-hhHHHHHHhhhh----CCC-CEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCC
Q 048562 82 MSATPRTDTS-MLQEPLKSLLVD----SRP-DCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKV 155 (464)
Q Consensus 82 ~~~~~~~~~~-~~~~~l~~~l~~----~~p-D~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (464)
....+..... .+.+.++++|++ .+| ++||+|.+.+|+..+|+.+|||.+.+++.+++....+.+... ..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~-~~---- 149 (449)
T PLN02173 75 SVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYI-NN---- 149 (449)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHh-cc----
Confidence 1223333332 456777777765 255 999999999999999999999999999988777655443211 11
Q ss_pred CCCCCceecCCCCC--------cccc--C--------hhhhhhhccccEEEEcCccccChHHHHHHHhhhCCCCeEEeCc
Q 048562 156 SSDYEPFVVPGLPD--------KIEL--T--------ALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGP 217 (464)
Q Consensus 156 ~~~~~~~~~p~~~~--------~~~~--~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp 217 (464)
...++.+|++|. .... . ...+....+.+++++|+|.+||+.+++.++.. .+++.|||
T Consensus 150 --~~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~---~~v~~VGP 224 (449)
T PLN02173 150 --GSLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV---CPVLTIGP 224 (449)
T ss_pred --CCccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc---CCeeEEcc
Confidence 011223444432 0100 0 01134567788999999999999998888643 47999999
Q ss_pred cccccc-CcchhhhcCCC--CC--CCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCC
Q 048562 218 VSLCNR-NIEDKAERGQK--TS--IDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIF 292 (464)
Q Consensus 218 ~~~~~~-~~~~~~~~~~~--~~--~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~ 292 (464)
+..... ........+.. .+ ..++++.+||+.++++++|||||||+...+.+++.+++.+| .+..|+|++...
T Consensus 225 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~- 301 (449)
T PLN02173 225 TVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRAS- 301 (449)
T ss_pred cCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEecc-
Confidence 964210 00000000000 00 12345889999998889999999999999999999999999 677899999743
Q ss_pred CCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccc
Q 048562 293 QSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQF 372 (464)
Q Consensus 293 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~ 372 (464)
+. ..+|+++.++.. ++|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+
T Consensus 302 ---------~~--~~lp~~~~~~~~--~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~ 368 (449)
T PLN02173 302 ---------EE--SKLPPGFLETVD--KDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQP 368 (449)
T ss_pred ---------ch--hcccchHHHhhc--CCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcch
Confidence 11 128888888875 67899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 048562 373 SNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAE 452 (464)
Q Consensus 373 ~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~ 452 (464)
.||+++++.+|+|+.+... ..++.++.++|.++|+++|.| ++++.+|+||++++++.++|+++|||+..+++
T Consensus 369 ~Na~~v~~~~g~Gv~v~~~-------~~~~~~~~e~v~~av~~vm~~-~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~ 440 (449)
T PLN02173 369 MNAKYIQDVWKVGVRVKAE-------KESGIAKREEIEFSIKEVMEG-EKSKEMKENAGKWRDLAVKSLSEGGSTDININ 440 (449)
T ss_pred HHHHHHHHHhCceEEEeec-------ccCCcccHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 9999996456999998643 001236999999999999986 45789999999999999999999999999999
Q ss_pred HHHHHHH
Q 048562 453 ALLQELK 459 (464)
Q Consensus 453 ~l~~~~~ 459 (464)
+|+++++
T Consensus 441 ~~v~~~~ 447 (449)
T PLN02173 441 TFVSKIQ 447 (449)
T ss_pred HHHHHhc
Confidence 9999885
No 16
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=5.7e-58 Score=461.99 Aligned_cols=421 Identities=28% Similarity=0.435 Sum_probs=304.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC--CcEEE--EeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCC-C-C
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAAHG--AKSTI--ITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIE-I-P 78 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~rG--h~Vt~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~-~ 78 (464)
|.+.||+++|++++||++|++.||+.|+.+| +.||+ .+++.+...+.+.......+..+++++.+|.+.... . .
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~ 80 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSST 80 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccc
Confidence 3478999999999999999999999999998 45555 444433222221111110111258888887543221 1 1
Q ss_pred CCC-CcccHHHHHhhhHHHHHHhhhhC----CCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCC
Q 048562 79 DTD-MSATPRTDTSMLQEPLKSLLVDS----RPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHE 153 (464)
Q Consensus 79 ~~~-~~~~~~~~~~~~~~~l~~~l~~~----~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 153 (464)
... ....+......+...+.++|++. ++++||+|.+.+|+..+|+++|||.+.+++++++.+..+.+.+......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~ 160 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETT 160 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccc
Confidence 111 11122333334555666666642 3599999999999999999999999999999998887776644321100
Q ss_pred -CCC-CCCCceecCCCCC--------ccccC--------hhhhhhhccccEEEEcCccccChHHHHHHHhhhCCCCeEEe
Q 048562 154 -KVS-SDYEPFVVPGLPD--------KIELT--------ALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFV 215 (464)
Q Consensus 154 -~~~-~~~~~~~~p~~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~v 215 (464)
... ....+..+|+++. .+... .+.+....+.+++++|+|++||+.+++.+......++++.|
T Consensus 161 ~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~~v 240 (451)
T PLN03004 161 PGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFRNIYPI 240 (451)
T ss_pred cccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCEEEE
Confidence 000 0112244566543 11101 01124456678999999999999999988765313689999
Q ss_pred CcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCC
Q 048562 216 GPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSP 295 (464)
Q Consensus 216 Gp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~ 295 (464)
||+....... . .. ...+.++.+|||.++++++|||||||+...+.+++++++.+|+.++++|||+++...
T Consensus 241 GPl~~~~~~~-~---~~---~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~--- 310 (451)
T PLN03004 241 GPLIVNGRIE-D---RN---DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPP--- 310 (451)
T ss_pred eeeccCcccc-c---cc---cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCc---
Confidence 9996421100 0 00 012346889999988899999999999999999999999999999999999998530
Q ss_pred CCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhH
Q 048562 296 GTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNE 375 (464)
Q Consensus 296 ~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na 375 (464)
+..........++|++|.+++. ..|+++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++||+.||
T Consensus 311 ~~~~~~~~~~~~lp~gf~er~~--~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na 388 (451)
T PLN03004 311 ELEKTELDLKSLLPEGFLSRTE--DKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNR 388 (451)
T ss_pred cccccccchhhhCChHHHHhcc--CCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhH
Confidence 0000000122248999999987 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 048562 376 KLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFI 449 (464)
Q Consensus 376 ~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 449 (464)
+++++++|+|+.++.. .++.+++++|.++|+++|.|+ +|++|++++++..++|+++||||..
T Consensus 389 ~~~~~~~g~g~~l~~~--------~~~~~~~e~l~~av~~vm~~~----~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 389 VMIVDEIKIAISMNES--------ETGFVSSTEVEKRVQEIIGEC----PVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHHHHhCceEEecCC--------cCCccCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9995357999999753 012579999999999999876 8999999999999999999999864
No 17
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1e-57 Score=468.04 Aligned_cols=434 Identities=29% Similarity=0.462 Sum_probs=312.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC--CcEEEEeCCcchhhhh--h-hhhhccCC-CCCeEEEEecCCCCCCCCCC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHG--AKSTIITSPKHALSFQ--K-SINRNQQS-GLPITIKTLHLPDDIEIPDT 80 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rG--h~Vt~~~~~~~~~~~~--~-~~~~~~~~-g~~~~~~~~~~~~~~~~~~~ 80 (464)
|+||+++|++++||++|++.||+.|+.+| ..|||++++.+...+. . ........ ..+++++.+|.+..- ..
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~---~~ 78 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQP---TT 78 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCC---cc
Confidence 68999999999999999999999999998 8899999887643221 1 11110000 125888888754321 11
Q ss_pred CCcccHHHHHh----hhHHHHHHhhhh-----CCC-CEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhC
Q 048562 81 DMSATPRTDTS----MLQEPLKSLLVD-----SRP-DCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYK 150 (464)
Q Consensus 81 ~~~~~~~~~~~----~~~~~l~~~l~~-----~~p-D~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 150 (464)
.. ..+...+. .+.+.+.+++.+ .+| ++||+|.++.|+..+|+.+|||++.|++.++.....+.+.+...
T Consensus 79 ~~-~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~ 157 (481)
T PLN02554 79 ED-PTFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLY 157 (481)
T ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhc
Confidence 11 12222222 234445554432 133 79999999999999999999999999999998888776654322
Q ss_pred CC---C--CCCCCCCceecCCCCCcc---ccC------------hhhhhhhccccEEEEcCccccChHHHHHHHhhhC-C
Q 048562 151 PH---E--KVSSDYEPFVVPGLPDKI---ELT------------ALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLG-N 209 (464)
Q Consensus 151 ~~---~--~~~~~~~~~~~p~~~~~~---~~~------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~ 209 (464)
.. . .+.....+..+|+++..+ .++ .+.+....+.+++++|+|.+|++.+...+....+ .
T Consensus 158 ~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~~~~ 237 (481)
T PLN02554 158 DEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSKEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSSGDL 237 (481)
T ss_pred cccccCccccCCCCceeECCCCCCCCCHHHCCCcccCHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhcccCC
Confidence 11 0 011111234466652101 110 0112456678899999999999998887765310 2
Q ss_pred CCeEEeCcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEc
Q 048562 210 DKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVG 289 (464)
Q Consensus 210 ~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~ 289 (464)
++++.|||+....+.... .....++++.+|++.++++++|||||||+...+.+++++++.+|++++++|||+++
T Consensus 238 ~~v~~vGpl~~~~~~~~~------~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~ 311 (481)
T PLN02554 238 PPVYPVGPVLHLENSGDD------SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLR 311 (481)
T ss_pred CCEEEeCCCccccccccc------cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 689999999432111000 00124568999999987789999999999888999999999999999999999997
Q ss_pred cCCCC-----CCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceee
Q 048562 290 KIFQS-----PGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVT 364 (464)
Q Consensus 290 ~~~~~-----~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~ 364 (464)
..... ++.. .+....+|++|.++. .+|+++.+|+||.+||+|+++++|||||||||++|++++|||||+
T Consensus 312 ~~~~~~~~~~~~~~---~~~~~~lp~~~~~r~---~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~ 385 (481)
T PLN02554 312 RASPNIMKEPPGEF---TNLEEILPEGFLDRT---KDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAA 385 (481)
T ss_pred CCcccccccccccc---cchhhhCChHHHHHh---ccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEe
Confidence 53000 0000 011223688998887 567788899999999999999999999999999999999999999
Q ss_pred cccccccchhHH-HHHhhhcceEEeccccccCCC-CCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHh
Q 048562 365 WPITAEQFSNEK-LISDVLKIGVKVGSVNWVSWS-TEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVE 442 (464)
Q Consensus 365 ~P~~~DQ~~na~-~v~~~~G~G~~l~~~~~~~~~-~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~ 442 (464)
+|+++||+.||+ ++ +++|+|+.++.. +..++ ......+++++|.++|+++|.++ +.||+||+++++.++++++
T Consensus 386 ~P~~~DQ~~Na~~~v-~~~g~Gv~l~~~-~~~~~~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~~~av~ 460 (481)
T PLN02554 386 WPLYAEQKFNAFEMV-EELGLAVEIRKY-WRGDLLAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKCHVALM 460 (481)
T ss_pred cCccccchhhHHHHH-HHhCceEEeecc-ccccccccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhc
Confidence 999999999995 56 699999999631 00000 00012689999999999999722 2899999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHhc
Q 048562 443 EGGSSFIDAEALLQELKSV 461 (464)
Q Consensus 443 ~gg~~~~~~~~l~~~~~~~ 461 (464)
+||++..++++|+++++++
T Consensus 461 ~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 461 DGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred CCChHHHHHHHHHHHHHhh
Confidence 9999999999999999876
No 18
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=3.3e-57 Score=459.36 Aligned_cols=410 Identities=27% Similarity=0.438 Sum_probs=305.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCccc
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (464)
.+.||+++|++++||++|++.||+.|+.+|++|||++++.+...+...... ..++.++.+| +++.-.....+..
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~----~~~i~~v~lp--~g~~~~~~~~~~~ 78 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP----KLGITFMSIS--DGQDDDPPRDFFS 78 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC----CCCEEEEECC--CCCCCCccccHHH
Confidence 357999999999999999999999999999999999999876655443111 1257888775 3433100111112
Q ss_pred HHHHHh-hhHHHHHHhhhhC----CCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCC---CCC
Q 048562 86 PRTDTS-MLQEPLKSLLVDS----RPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEK---VSS 157 (464)
Q Consensus 86 ~~~~~~-~~~~~l~~~l~~~----~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 157 (464)
+...+. .+.+.+.+++++. ++++||+|.+..|+..+|+++|||++.++++++..+..+.+.+....... .+.
T Consensus 79 l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (448)
T PLN02562 79 IENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGC 158 (448)
T ss_pred HHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccc
Confidence 333333 4567777777653 24799999999999999999999999999988877766554432211100 000
Q ss_pred C--CCce-ecCCCCC--------ccccC----------hhhhhhhccccEEEEcCccccChHHHHHHHhh----hCCCCe
Q 048562 158 D--YEPF-VVPGLPD--------KIELT----------ALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQD----LGNDKA 212 (464)
Q Consensus 158 ~--~~~~-~~p~~~~--------~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~v 212 (464)
+ ..+. .+|+++. .+... .+.+....+.+++++|+|.+||+.+++..... . .+++
T Consensus 159 ~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~-~~~v 237 (448)
T PLN02562 159 PRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQ-NPQI 237 (448)
T ss_pred cccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhcccc-CCCE
Confidence 0 0111 3454432 01000 01124456678999999999999888765431 2 3689
Q ss_pred EEeCcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCC-CCCHHhHHHHHHHHhhCCCceEEEEccC
Q 048562 213 WFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLA-RLSPEQLLEIAYGLEASNHSFIWVVGKI 291 (464)
Q Consensus 213 ~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~-~~~~~~~~~~~~al~~~~~~~v~~~~~~ 291 (464)
+.|||+........ ++......+.++.+||+.++++++|||||||+. ..+.+++.+++.+|++++++|||+++..
T Consensus 238 ~~iGpl~~~~~~~~----~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~ 313 (448)
T PLN02562 238 LQIGPLHNQEATTI----TKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPV 313 (448)
T ss_pred EEecCccccccccc----CCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 99999975421100 000000123456799999888899999999986 5789999999999999999999999653
Q ss_pred CCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeeccccccc
Q 048562 292 FQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQ 371 (464)
Q Consensus 292 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ 371 (464)
.. ..+|++|.++. ++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 314 -----------~~-~~l~~~~~~~~---~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ 378 (448)
T PLN02562 314 -----------WR-EGLPPGYVERV---SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQ 378 (448)
T ss_pred -----------ch-hhCCHHHHHHh---ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccch
Confidence 11 12888888876 6788999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 048562 372 FSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDA 451 (464)
Q Consensus 372 ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~ 451 (464)
+.||+++++.+|+|+.+. .+++++|.++|+++|.|+ +|++||++++++++++ ++||||..++
T Consensus 379 ~~na~~~~~~~g~g~~~~-------------~~~~~~l~~~v~~~l~~~----~~r~~a~~l~~~~~~~-~~gGSS~~nl 440 (448)
T PLN02562 379 FVNCAYIVDVWKIGVRIS-------------GFGQKEVEEGLRKVMEDS----GMGERLMKLRERAMGE-EARLRSMMNF 440 (448)
T ss_pred HHHHHHHHHHhCceeEeC-------------CCCHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHhc-CCCCCHHHHH
Confidence 999999963469998883 479999999999999886 8999999999999876 6689999999
Q ss_pred HHHHHHHH
Q 048562 452 EALLQELK 459 (464)
Q Consensus 452 ~~l~~~~~ 459 (464)
++|+++++
T Consensus 441 ~~~v~~~~ 448 (448)
T PLN02562 441 TTLKDELK 448 (448)
T ss_pred HHHHHHhC
Confidence 99999874
No 19
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.6e-57 Score=459.47 Aligned_cols=422 Identities=29% Similarity=0.440 Sum_probs=313.1
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhC--CCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecC--CCCCCCCC
Q 048562 4 KSSPVEMFFFPYVGGGHQIPMVDIARIFAAH--GAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHL--PDDIEIPD 79 (464)
Q Consensus 4 ~~~~~~vl~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~ 79 (464)
.....||+++|++++||++|++.||++|+++ ||+|||++++.+...+.+... ..++.|+.+|. |++.+..
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~-----~~gi~fv~lp~~~p~~~~~~- 80 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK-----PDNIRFATIPNVIPSELVRA- 80 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC-----CCCEEEEECCCCCCCccccc-
Confidence 4568999999999999999999999999999 999999999988776665311 12588888763 2222111
Q ss_pred CCCcccHHHH-HhhhHHHHHHhhhh--CCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCC
Q 048562 80 TDMSATPRTD-TSMLQEPLKSLLVD--SRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVS 156 (464)
Q Consensus 80 ~~~~~~~~~~-~~~~~~~l~~~l~~--~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (464)
.....+... ...+...+.+++++ .++|+||+|.++.|+..+|+++|||++.+++.++.....+.+...........
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~ 159 (459)
T PLN02448 81 -ADFPGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFP 159 (459)
T ss_pred -cCHHHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCC
Confidence 111122222 22455667777765 36899999999999999999999999999999887766655543221110000
Q ss_pred CC-----CCce-ecCCCCC--------cc-ccC---h----hhhhhhccccEEEEcCccccChHHHHHHHhhhCCCCeEE
Q 048562 157 SD-----YEPF-VVPGLPD--------KI-ELT---A----LSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWF 214 (464)
Q Consensus 157 ~~-----~~~~-~~p~~~~--------~~-~~~---~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~ 214 (464)
.. ..+. .+|+++. .+ +.. . ..+....+..++++|+|++||+.+++.+...+ +.+++.
T Consensus 160 ~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~-~~~~~~ 238 (459)
T PLN02448 160 VELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKF-PFPVYP 238 (459)
T ss_pred CccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhc-CCceEE
Confidence 00 0111 2444321 11 000 0 01233456679999999999999999888766 568999
Q ss_pred eCcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCC
Q 048562 215 VGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQS 294 (464)
Q Consensus 215 vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~ 294 (464)
|||+......... ..+. .....+.++.+|++..+++++|||||||....+.+++++++.+|+..+++|||++...
T Consensus 239 iGP~~~~~~~~~~-~~~~-~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~--- 313 (459)
T PLN02448 239 IGPSIPYMELKDN-SSSS-NNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE--- 313 (459)
T ss_pred ecCcccccccCCC-cccc-ccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc---
Confidence 9998643111000 0000 0001224788999998888999999999998889999999999999999999987543
Q ss_pred CCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchh
Q 048562 295 PGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSN 374 (464)
Q Consensus 295 ~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~n 374 (464)
. .++.++. ++|+.+.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.|
T Consensus 314 -------~-------~~~~~~~---~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~n 376 (459)
T PLN02448 314 -------A-------SRLKEIC---GDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLN 376 (459)
T ss_pred -------h-------hhHhHhc---cCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhh
Confidence 0 1233322 4578888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 048562 375 EKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTG-EEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEA 453 (464)
Q Consensus 375 a~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~-~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~ 453 (464)
|+++++.+|+|+.+... ....+.+++++|+++|+++|.++ +++++||+||++|++.+++++.+|||+..++++
T Consensus 377 a~~v~~~~g~G~~~~~~------~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~ 450 (459)
T PLN02448 377 SKLIVEDWKIGWRVKRE------VGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDA 450 (459)
T ss_pred HHHHHHHhCceEEEecc------cccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99996347999998532 00012579999999999999874 788999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 048562 454 LLQELKSV 461 (464)
Q Consensus 454 l~~~~~~~ 461 (464)
|++++++.
T Consensus 451 ~v~~~~~~ 458 (459)
T PLN02448 451 FIRDISQG 458 (459)
T ss_pred HHHHHhcc
Confidence 99999863
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=9.2e-57 Score=460.28 Aligned_cols=437 Identities=28% Similarity=0.401 Sum_probs=308.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCC---cEEEEeCCcchh-hhhhhhhhccCCCCCeEEEEecCCCCCC-CC-
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAAHGA---KSTIITSPKHAL-SFQKSINRNQQSGLPITIKTLHLPDDIE-IP- 78 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh---~Vt~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~- 78 (464)
+++.||+++|++++||++|++.||+.|+.+|. .||++++..... ...........+..+++++.+|.+.+-. ..
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccc
Confidence 45789999999999999999999999999984 466666443221 1111111100111258888887553210 00
Q ss_pred -CCCCcccHHHHHhhhHHHHHHhhhh---------C-CCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHH
Q 048562 79 -DTDMSATPRTDTSMLQEPLKSLLVD---------S-RPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVR 147 (464)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~l~~~l~~---------~-~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 147 (464)
.......+......+...+++.|++ . ++++||+|.+++|+..+|+++|||.+.|++++++.+..+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 0001112222222333334443332 1 3499999999999999999999999999999988877766543
Q ss_pred hhC-CCC-C--CCCCCCceecCCCCCcc---ccC--------h----hhhhhhccccEEEEcCccccChHHHHHHHhhhC
Q 048562 148 KYK-PHE-K--VSSDYEPFVVPGLPDKI---ELT--------A----LSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLG 208 (464)
Q Consensus 148 ~~~-~~~-~--~~~~~~~~~~p~~~~~~---~~~--------~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 208 (464)
... ... . ......++.+|+++..+ .+. . ..+....+.+++++|+|++||+.+++.++...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~ 240 (475)
T PLN02167 161 ERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSRLPE 240 (475)
T ss_pred HhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcchHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHhhcc
Confidence 211 100 0 00111334567663211 111 0 112446678899999999999999988865421
Q ss_pred -CCCeEEeCcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEE
Q 048562 209 -NDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWV 287 (464)
Q Consensus 209 -~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~ 287 (464)
-++++.|||+......... ..+...++++.+||+.++.+++|||||||+...+.+++.+++.+|+.++++|||+
T Consensus 241 ~~p~v~~vGpl~~~~~~~~~-----~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~ 315 (475)
T PLN02167 241 NYPPVYPVGPILSLKDRTSP-----NLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWS 315 (475)
T ss_pred cCCeeEEeccccccccccCC-----CCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEE
Confidence 1689999999753210000 0001123579999999888899999999998889999999999999999999999
Q ss_pred EccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeeccc
Q 048562 288 VGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPI 367 (464)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~ 367 (464)
++... .. . ......||++|.+++. +..++++|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 316 ~~~~~--~~-~---~~~~~~lp~~~~er~~---~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~ 386 (475)
T PLN02167 316 IRTNP--AE-Y---ASPYEPLPEGFMDRVM---GRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPM 386 (475)
T ss_pred EecCc--cc-c---cchhhhCChHHHHHhc---cCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccc
Confidence 97530 00 0 0011238889988874 34567799999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 048562 368 TAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSS 447 (464)
Q Consensus 368 ~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~ 447 (464)
++||+.||+++++.+|+|+.+.... ..+ .+..+++++|.++|+++|.++ +.||+||+++++.+++++.+|||+
T Consensus 387 ~~DQ~~na~~~~~~~g~g~~~~~~~-~~~---~~~~~~~~~l~~av~~~m~~~---~~~r~~a~~~~~~~~~av~~gGsS 459 (475)
T PLN02167 387 YAEQQLNAFTMVKELGLAVELRLDY-VSA---YGEIVKADEIAGAVRSLMDGE---DVPRKKVKEIAEAARKAVMDGGSS 459 (475)
T ss_pred cccchhhHHHHHHHhCeeEEeeccc-ccc---cCCcccHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHhCCCcH
Confidence 9999999987336999999996420 000 012579999999999999764 279999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 048562 448 FIDAEALLQELKSVS 462 (464)
Q Consensus 448 ~~~~~~l~~~~~~~~ 462 (464)
..++++|++++++-+
T Consensus 460 ~~~l~~~v~~i~~~~ 474 (475)
T PLN02167 460 FVAVKRFIDDLLGDH 474 (475)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998743
No 21
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.4e-56 Score=450.68 Aligned_cols=421 Identities=25% Similarity=0.412 Sum_probs=303.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHh-CCCcEEEEeCCcc-hhhhhhhhhhccCCCCCeEEEEecCCCCCCC---C-
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAA-HGAKSTIITSPKH-ALSFQKSINRNQQSGLPITIKTLHLPDDIEI---P- 78 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~- 78 (464)
|++.||+++|++++||++|++.||+.|+. +|+.|||++++.+ ...+... . ....++.++.++ +++.- .
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~---~-~~~~~i~~~~i~--dglp~g~~~~ 74 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN---H-NNVENLSFLTFS--DGFDDGVISN 74 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc---C-CCCCCEEEEEcC--CCCCCccccc
Confidence 34679999999999999999999999996 6999999999854 2211111 0 111257787775 44431 1
Q ss_pred CCCCcccHHHHHhhhHHHHHHhhhh-----CCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCC
Q 048562 79 DTDMSATPRTDTSMLQEPLKSLLVD-----SRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHE 153 (464)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~l~~-----~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~ 153 (464)
.......+......+.+.+.+++++ .++++||+|.+.+|+..+|+.+|||.+.+++.+++....+++.....
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~--- 151 (455)
T PLN02152 75 TDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN--- 151 (455)
T ss_pred cccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC---
Confidence 1111122333334456667776664 23499999999999999999999999999999998887765543211
Q ss_pred CCCCCCCceecCCCCC--------cccc---C-------hhhhhhhc--cccEEEEcCccccChHHHHHHHhhhCCCCeE
Q 048562 154 KVSSDYEPFVVPGLPD--------KIEL---T-------ALSFRFEE--KSFGIVVNSFYDLEPAYVEYFKQDLGNDKAW 213 (464)
Q Consensus 154 ~~~~~~~~~~~p~~~~--------~~~~---~-------~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~ 213 (464)
...+.+|+++. .+.. . .+.+.... ..+++++|+|++||+.+++.++. .+++
T Consensus 152 -----~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~----~~v~ 222 (455)
T PLN02152 152 -----NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN----IEMV 222 (455)
T ss_pred -----CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc----CCEE
Confidence 11223444432 1100 0 00112222 24699999999999999887753 3699
Q ss_pred EeCcccccccCcchhhhcCCCC--CCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccC
Q 048562 214 FVGPVSLCNRNIEDKAERGQKT--SIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKI 291 (464)
Q Consensus 214 ~vGp~~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~ 291 (464)
.|||+.......... .+... +..+.++.+|||.++++++|||||||+...+.+++++++.+|+.++++|||+++..
T Consensus 223 ~VGPL~~~~~~~~~~--~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~ 300 (455)
T PLN02152 223 AVGPLLPAEIFTGSE--SGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDK 300 (455)
T ss_pred EEcccCccccccccc--cCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 999996431100000 00000 11234799999998888999999999999999999999999999999999999753
Q ss_pred CCCCCCCcCCccccc-CCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccc
Q 048562 292 FQSPGTRKENGIEEN-WLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAE 370 (464)
Q Consensus 292 ~~~~~~~~~~~~~~~-~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~D 370 (464)
......... +.... .+|++|.++. ++|.++.+|+||.+||+|+++++|||||||||++|++++|||||++|+++|
T Consensus 301 ~~~~~~~~~-~~~~~~~~~~~f~e~~---~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~D 376 (455)
T PLN02152 301 LNREAKIEG-EEETEIEKIAGFRHEL---EEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSD 376 (455)
T ss_pred ccccccccc-ccccccccchhHHHhc---cCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEecccccc
Confidence 000000000 00000 1467888876 567788899999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 048562 371 QFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFID 450 (464)
Q Consensus 371 Q~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~ 450 (464)
|+.||+++++.+|+|+.+... ..+.+++++|.++|+++|+| +++.||+||++|++.+++++.+||++..+
T Consensus 377 Q~~na~~~~~~~~~G~~~~~~--------~~~~~~~e~l~~av~~vm~~--~~~~~r~~a~~~~~~~~~a~~~ggsS~~n 446 (455)
T PLN02152 377 QPANAKLLEEIWKTGVRVREN--------SEGLVERGEIRRCLEAVMEE--KSVELRESAEKWKRLAIEAGGEGGSSDKN 446 (455)
T ss_pred chHHHHHHHHHhCceEEeecC--------cCCcCcHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 999999996445777776432 01246999999999999974 35579999999999999999999999999
Q ss_pred HHHHHHHHH
Q 048562 451 AEALLQELK 459 (464)
Q Consensus 451 ~~~l~~~~~ 459 (464)
+++|++++.
T Consensus 447 l~~li~~i~ 455 (455)
T PLN02152 447 VEAFVKTLC 455 (455)
T ss_pred HHHHHHHhC
Confidence 999999873
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.7e-47 Score=393.65 Aligned_cols=380 Identities=18% Similarity=0.234 Sum_probs=273.6
Q ss_pred CcEEEEE-cCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCC-CCCC--CCCCCC
Q 048562 7 PVEMFFF-PYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLP-DDIE--IPDTDM 82 (464)
Q Consensus 7 ~~~vl~~-~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~--~~~~~~ 82 (464)
..|||++ |.++.||+.-+..|+++|++|||+||++++..... .... . ..+++.+.++.. +... ......
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~-~-----~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH-L-----CGNITEIDASLSVEYFKKLVKSSAV 92 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC-C-----CCCEEEEEcCCChHHHHHHHhhhhH
Confidence 4678866 88899999999999999999999999997753210 0000 0 124444444311 1100 000000
Q ss_pred -----------------cccHHHHHhh--hHHHHHHhhh--hCCCCEEEeCCCchhhHHHHHHc-CCCeEEEeccchHHH
Q 048562 83 -----------------SATPRTDTSM--LQEPLKSLLV--DSRPDCIVHDMFHHWSADVINSM-NIPRIVFNGNCCFSR 140 (464)
Q Consensus 83 -----------------~~~~~~~~~~--~~~~l~~~l~--~~~pD~Vi~D~~~~~~~~~A~~~-giP~v~~~~~~~~~~ 140 (464)
...+...++. ..+.+.++|+ +.++|+||+|.+..|+..+|+++ ++|.|.++++.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~ 172 (507)
T PHA03392 93 FRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAE 172 (507)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchh
Confidence 0001111111 2466788887 77899999998888999999999 999998887655433
Q ss_pred HHHHHHHhhCCCCCCC-CCCCceecCC----CCCccccChhhh------------------------h-----------h
Q 048562 141 CILENVRKYKPHEKVS-SDYEPFVVPG----LPDKIELTALSF------------------------R-----------F 180 (464)
Q Consensus 141 ~~~~~~~~~~~~~~~~-~~~~~~~~p~----~~~~~~~~~~~~------------------------~-----------~ 180 (464)
... .++ .+..+.++|. +.+.|++.+|.. + .
T Consensus 173 ~~~----------~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l 242 (507)
T PHA03392 173 NFE----------TMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIREL 242 (507)
T ss_pred HHH----------hhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHH
Confidence 211 123 5566777774 445566665530 0 0
Q ss_pred hccccEEEEcCccccChHHHHHHHhhhCCCCeEEeCcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecC
Q 048562 181 EEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFG 260 (464)
Q Consensus 181 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~G 260 (464)
..+...+++|+...+ ++++ .+ ++++.+|||+..+... .+.+++++.+|++.. ++++||||||
T Consensus 243 ~~~~~l~lvns~~~~-----d~~r-p~-~p~v~~vGgi~~~~~~----------~~~l~~~l~~fl~~~-~~g~V~vS~G 304 (507)
T PHA03392 243 RNRVQLLFVNVHPVF-----DNNR-PV-PPSVQYLGGLHLHKKP----------PQPLDDYLEEFLNNS-TNGVVYVSFG 304 (507)
T ss_pred HhCCcEEEEecCccc-----cCCC-CC-CCCeeeecccccCCCC----------CCCCCHHHHHHHhcC-CCcEEEEECC
Confidence 011122344444433 3444 34 6899999998764211 123678999999976 4689999999
Q ss_pred CCCC---CCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcc
Q 048562 261 SLAR---LSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEH 337 (464)
Q Consensus 261 S~~~---~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~ 337 (464)
|+.. .+.++++.+++|+++++++|||++++. . .+.+ .|+|+++.+|+||.+||+|
T Consensus 305 S~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~-----------~----~~~~-------~p~Nv~i~~w~Pq~~lL~h 362 (507)
T PHA03392 305 SSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGE-----------V----EAIN-------LPANVLTQKWFPQRAVLKH 362 (507)
T ss_pred CCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCC-----------c----Cccc-------CCCceEEecCCCHHHHhcC
Confidence 9874 468899999999999999999999764 1 1101 1789999999999999999
Q ss_pred cCceeeccccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHh
Q 048562 338 TAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLM 417 (464)
Q Consensus 338 ~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il 417 (464)
+++++||||||+||++||+++|||||++|+++||+.||+|+ +++|+|+.++.. .++.++|.++|++++
T Consensus 363 p~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l~~~-----------~~t~~~l~~ai~~vl 430 (507)
T PHA03392 363 KNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRALDTV-----------TVSAAQLVLAIVDVI 430 (507)
T ss_pred CCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEeccC-----------CcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 599999999986 799999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Q 048562 418 GTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALLQELKSVS 462 (464)
Q Consensus 418 ~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~~~~~~ 462 (464)
+|+ +|++||+++++.+++ ..-+..+.+..-+|.+.+..
T Consensus 431 ~~~----~y~~~a~~ls~~~~~---~p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 431 ENP----KYRKNLKELRHLIRH---QPMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred CCH----HHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCC
Confidence 997 999999999999994 43334455667777776654
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.3e-48 Score=407.06 Aligned_cols=360 Identities=23% Similarity=0.335 Sum_probs=223.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCC---CCC--CCC----
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPD---DIE--IPD---- 79 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~--~~~---- 79 (464)
|||++|. +.||+.++..|+++|++|||+||++++..... +.... ...+++..++.+. ... ...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSS-LNPSK------PSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT-------------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccc-ccccc------ccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 6888886 88999999999999999999999998754221 11110 1234555554321 111 110
Q ss_pred ----CCCcccHHH---HH--------hhh-----HHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHH
Q 048562 80 ----TDMSATPRT---DT--------SML-----QEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFS 139 (464)
Q Consensus 80 ----~~~~~~~~~---~~--------~~~-----~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~ 139 (464)
......+.. .. ..| ...+.+.+++.++|++|+|.+..|+..+|+.+++|.+.+.+.....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~ 153 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMY 153 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccc
Confidence 000000110 00 011 2334445566789999999998899999999999998764332111
Q ss_pred HHHHHHHHhhCCCCC-CCCCCCceecCC----CCCccccChhh------------hhhhccc---cEEEEcCcc----cc
Q 048562 140 RCILENVRKYKPHEK-VSSDYEPFVVPG----LPDKIELTALS------------FRFEEKS---FGIVVNSFY----DL 195 (464)
Q Consensus 140 ~~~~~~~~~~~~~~~-~~~~~~~~~~p~----~~~~~~~~~~~------------~~~~~~~---~~~~~~~~~----~l 195 (464)
. .... .+.+..+.++|. +++.|++.+|. +...... ...-....+ ++
T Consensus 154 ~----------~~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (500)
T PF00201_consen 154 D----------LSSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFREL 223 (500)
T ss_dssp C----------CTCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHH
T ss_pred h----------hhhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHH
Confidence 0 0111 133445555553 45566666542 0111100 000111111 00
Q ss_pred C----------hHHHHHHHhhhCCCCeEEeCcccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCC
Q 048562 196 E----------PAYVEYFKQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARL 265 (464)
Q Consensus 196 ~----------~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~ 265 (464)
. ...+++++... +++.+||++....+ +.+++++.+|++...++++|||||||+...
T Consensus 224 ~~~~~l~l~ns~~~ld~prp~~--p~v~~vGgl~~~~~------------~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~ 289 (500)
T PF00201_consen 224 LSNASLVLINSHPSLDFPRPLL--PNVVEVGGLHIKPA------------KPLPEELWNFLDSSGKKGVVYVSFGSIVSS 289 (500)
T ss_dssp HHHHHHCCSSTEEE----HHHH--CTSTTGCGC-S----------------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT
T ss_pred HHHHHHHhhhccccCcCCcchh--hcccccCccccccc------------cccccccchhhhccCCCCEEEEecCcccch
Confidence 0 11234455554 67888888754422 237789999999855789999999999864
Q ss_pred -CHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeec
Q 048562 266 -SPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFM 344 (464)
Q Consensus 266 -~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~I 344 (464)
+.+.+++++++|++++++|||++.+. .+..+ ++|+++.+|+||.+||+|+++++||
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~iW~~~~~----------------~~~~l-------~~n~~~~~W~PQ~~lL~hp~v~~fi 346 (500)
T PF00201_consen 290 MPEEKLKEIAEAFENLPQRFIWKYEGE----------------PPENL-------PKNVLIVKWLPQNDLLAHPRVKLFI 346 (500)
T ss_dssp -HHHHHHHHHHHHHCSTTEEEEEETCS----------------HGCHH-------HTTEEEESS--HHHHHTSTTEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCccccccccc----------------ccccc-------cceEEEeccccchhhhhcccceeee
Confidence 45558899999999999999999764 11111 6799999999999999999999999
Q ss_pred cccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHH
Q 048562 345 THCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAA 424 (464)
Q Consensus 345 tHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~ 424 (464)
||||+||++||+++|||||++|+++||+.||+++ ++.|+|+.++.. .++.++|.++|+++|+|+
T Consensus 347 tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l~~~-----------~~~~~~l~~ai~~vl~~~---- 410 (500)
T PF00201_consen 347 THGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVLDKN-----------DLTEEELRAAIREVLENP---- 410 (500)
T ss_dssp ES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEEGGG-----------C-SHHHHHHHHHHHHHSH----
T ss_pred eccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEEEec-----------CCcHHHHHHHHHHHHhhh----
Confidence 9999999999999999999999999999999999 599999999987 899999999999999997
Q ss_pred HHHHHHHHHHHHHHH
Q 048562 425 EMRRRAGELGEKAKN 439 (464)
Q Consensus 425 ~~~~~a~~l~~~~~~ 439 (464)
+|++||+++++.+++
T Consensus 411 ~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 411 SYKENAKRLSSLFRD 425 (500)
T ss_dssp HHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHHhc
Confidence 899999999999995
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=2.6e-41 Score=341.61 Aligned_cols=371 Identities=19% Similarity=0.214 Sum_probs=249.4
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCC-CCCCC----CCc---c
Q 048562 13 FPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDI-EIPDT----DMS---A 84 (464)
Q Consensus 13 ~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~----~~~---~ 84 (464)
+.+|+.||++|++.||++|+++||+|+|++++.+.+.+... ++.+..++..... +.... ... .
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA---------GAEFVLYGSALPPPDNPPENTEEEPIDIIE 71 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc---------CCEEEecCCcCccccccccccCcchHHHHH
Confidence 35789999999999999999999999999999998888876 5666666532111 11100 001 1
Q ss_pred cHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCceec
Q 048562 85 TPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVV 164 (464)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (464)
.+........+.+.+.+++.+||+||+|.++.++..+|+.+|||+|.+++....... +.....+ ....... ..
T Consensus 72 ~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~---~~~~~~~---~~~~~~~-~~ 144 (392)
T TIGR01426 72 KLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE---FEEMVSP---AGEGSAE-EG 144 (392)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc---ccccccc---cchhhhh-hh
Confidence 111111223345566667789999999998888999999999999998654211100 0000000 0000000 00
Q ss_pred CCCCCccccChhhhhhhccccEEE--------Ec-C--ccccChHHHHHHHhhhCCCCeEEeCcccccccCcchhhhcCC
Q 048562 165 PGLPDKIELTALSFRFEEKSFGIV--------VN-S--FYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNRNIEDKAERGQ 233 (464)
Q Consensus 165 p~~~~~~~~~~~~~~~~~~~~~~~--------~~-~--~~~l~~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~ 233 (464)
+......+.....+....+..|+- .. . .....++++.+....+ +++++++||+.....
T Consensus 145 ~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~Gp~~~~~~---------- 213 (392)
T TIGR01426 145 AIAERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETF-DDSFTFVGPCIGDRK---------- 213 (392)
T ss_pred ccccchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCcccc-CCCeEEECCCCCCcc----------
Confidence 000000000000011111111110 00 0 1112344554444556 778999999754311
Q ss_pred CCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHH
Q 048562 234 KTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFE 313 (464)
Q Consensus 234 ~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~ 313 (464)
+...|....+++++||||+||+.....+.++.+++++.+.+.+++|.++.. ... ..+.
T Consensus 214 -------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~----------~~~-----~~~~ 271 (392)
T TIGR01426 214 -------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRG----------VDP-----ADLG 271 (392)
T ss_pred -------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCC----------CCh-----hHhc
Confidence 122366655678899999999877666788899999999999999998764 110 1111
Q ss_pred HhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccc
Q 048562 314 ERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNW 393 (464)
Q Consensus 314 ~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 393 (464)
+.++|+.+.+|+||.++|+++++ ||||||+||+.|++++|+|+|++|...||+.||+++ +++|+|..+...
T Consensus 272 ----~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l-~~~g~g~~l~~~-- 342 (392)
T TIGR01426 272 ----ELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRI-AELGLGRHLPPE-- 342 (392)
T ss_pred ----cCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHH-HHCCCEEEeccc--
Confidence 11779999999999999999887 999999999999999999999999999999999999 599999999775
Q ss_pred cCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048562 394 VSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALLQELK 459 (464)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~~~ 459 (464)
.+++++|.++|+++++|+ +|+++++++++.+++ .+|. ..++++++++.
T Consensus 343 ---------~~~~~~l~~ai~~~l~~~----~~~~~~~~l~~~~~~---~~~~--~~aa~~i~~~~ 390 (392)
T TIGR01426 343 ---------EVTAEKLREAVLAVLSDP----RYAERLRKMRAEIRE---AGGA--RRAADEIEGFL 390 (392)
T ss_pred ---------cCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHH---cCCH--HHHHHHHHHhh
Confidence 789999999999999987 899999999999993 5554 34466666653
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=3.3e-40 Score=334.68 Aligned_cols=365 Identities=17% Similarity=0.190 Sum_probs=241.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCC---CCC-----
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIE---IPD----- 79 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~----- 79 (464)
|||+|++.|+.||++|++.||++|++|||+|+|++++.+...+... ++++..++...... ...
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~---------G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA---------GLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc---------CCceeeCCCCHHHHHhhhhhccccc
Confidence 5899999999999999999999999999999999999888777765 56776664321110 000
Q ss_pred ---CCC----cccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCC
Q 048562 80 ---TDM----SATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPH 152 (464)
Q Consensus 80 ---~~~----~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~ 152 (464)
... ...+..........+.+.+++.+||+||+|.+..++..+|+++|||++.+++++......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~---------- 141 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA---------- 141 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc----------
Confidence 000 011112223334455566667899999999988888999999999999998765332100
Q ss_pred CCCCCCCCceecCCCCCcc----cc------ChhhhhhhccccEEEE------cCccc--cChHHHHHHHhhhCCCCeEE
Q 048562 153 EKVSSDYEPFVVPGLPDKI----EL------TALSFRFEEKSFGIVV------NSFYD--LEPAYVEYFKQDLGNDKAWF 214 (464)
Q Consensus 153 ~~~~~~~~~~~~p~~~~~~----~~------~~~~~~~~~~~~~~~~------~~~~~--l~~~~~~~~~~~~~~~~v~~ 214 (464)
..+.. ....... .. ....+....+..|+-. ..... ...+.+......+ ++...+
T Consensus 142 ------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 213 (401)
T cd03784 142 ------FPPPL-GRANLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPPPPDW-PRFDLV 213 (401)
T ss_pred ------CCCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCCCCCc-cccCcE
Confidence 00000 0000000 00 0000011111111100 00000 0011111112223 334444
Q ss_pred eC-cccccccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCC-CHHhHHHHHHHHhhCCCceEEEEccCC
Q 048562 215 VG-PVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARL-SPEQLLEIAYGLEASNHSFIWVVGKIF 292 (464)
Q Consensus 215 vG-p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~~~v~~~~~~~ 292 (464)
+| ++..... ....++++..|++. ++++|||++||+... ..+.+..+++++...+.++||+++..
T Consensus 214 ~g~~~~~~~~-----------~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~- 279 (401)
T cd03784 214 TGYGFRDVPY-----------NGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWG- 279 (401)
T ss_pred eCCCCCCCCC-----------CCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCc-
Confidence 43 2211110 01134567778765 467999999999864 45677888999999999999999875
Q ss_pred CCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccc
Q 048562 293 QSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQF 372 (464)
Q Consensus 293 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~ 372 (464)
.... . ..++|+++.+|+||.++|+++++ ||||||+||++|++++|||+|++|...||+
T Consensus 280 ---------~~~~--~---------~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~ 337 (401)
T cd03784 280 ---------GLGA--E---------DLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQP 337 (401)
T ss_pred ---------cccc--c---------CCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcH
Confidence 1100 0 01679999999999999999887 999999999999999999999999999999
Q ss_pred hhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 048562 373 SNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAE 452 (464)
Q Consensus 373 ~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~ 452 (464)
.||+++ +++|+|+.++.. .+++++|.++|++++++ .++++++++++++++ .+|. ..+.
T Consensus 338 ~~a~~~-~~~G~g~~l~~~-----------~~~~~~l~~al~~~l~~-----~~~~~~~~~~~~~~~---~~g~--~~~~ 395 (401)
T cd03784 338 FWAARV-AELGAGPALDPR-----------ELTAERLAAALRRLLDP-----PSRRRAAALLRRIRE---EDGV--PSAA 395 (401)
T ss_pred HHHHHH-HHCCCCCCCCcc-----------cCCHHHHHHHHHHHhCH-----HHHHHHHHHHHHHHh---ccCH--HHHH
Confidence 999999 599999999876 68999999999999985 567778888877763 4453 4456
Q ss_pred HHHHH
Q 048562 453 ALLQE 457 (464)
Q Consensus 453 ~l~~~ 457 (464)
+++++
T Consensus 396 ~~ie~ 400 (401)
T cd03784 396 DVIER 400 (401)
T ss_pred HHHhh
Confidence 66654
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-40 Score=330.63 Aligned_cols=375 Identities=20% Similarity=0.273 Sum_probs=248.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCC-CCCC-----CC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDD-IEIP-----DT 80 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~-----~~ 80 (464)
++||+|+..|+.||++|+++|+++|.++||+|+|+|.+.+.+.+++. +..|..++..+. .... ..
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a---------g~~f~~~~~~~~~~~~~~~~~~~~ 71 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA---------GLAFVAYPIRDSELATEDGKFAGV 71 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh---------CcceeeccccCChhhhhhhhhhcc
Confidence 58999999999999999999999999999999999999999999987 455566554311 1111 11
Q ss_pred CCcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCC
Q 048562 81 DMSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYE 160 (464)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (464)
..+.............+.+.+.+..+|+|+.|...+.+ .+++..++|++............... +....... .
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~ 144 (406)
T COG1819 72 KSFRRLLQQFKKLIRELLELLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGL-----PLPPVGIA-G 144 (406)
T ss_pred chhHHHhhhhhhhhHHHHHHHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccccc-----Cccccccc-c
Confidence 11111222233345677788889999999999777655 88888999988764332221110000 00000000 0
Q ss_pred ceecCC--CCCc-c-----ccChhhhhhhccccE--EEEcCcc-------ccChHHHHHHH---hhhCCCCeEEeCcccc
Q 048562 161 PFVVPG--LPDK-I-----ELTALSFRFEEKSFG--IVVNSFY-------DLEPAYVEYFK---QDLGNDKAWFVGPVSL 220 (464)
Q Consensus 161 ~~~~p~--~~~~-~-----~~~~~~~~~~~~~~~--~~~~~~~-------~l~~~~~~~~~---~~~~~~~v~~vGp~~~ 220 (464)
....+. ++.. + ...+..........+ +..+.+. .+...+.+... ... +....++||+..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~ 223 (406)
T COG1819 145 KLPIPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGDRL-PFIGPYIGPLLG 223 (406)
T ss_pred cccccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCCCC-CCCcCccccccc
Confidence 000110 0000 0 000100011111111 0000000 00000000000 001 112223333322
Q ss_pred cccCcchhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcC
Q 048562 221 CNRNIEDKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKE 300 (464)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~ 300 (464)
. ...++..|. ..++++||+|+||.... .+++..+++++..++.++|..+++. .
T Consensus 224 ~----------------~~~~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~------~-- 276 (406)
T COG1819 224 E----------------AANELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA------R-- 276 (406)
T ss_pred c----------------ccccCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc------c--
Confidence 2 223333442 33578999999999977 8899999999999999999999763 0
Q ss_pred CcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhHHHHHh
Q 048562 301 NGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISD 380 (464)
Q Consensus 301 ~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~ 380 (464)
.+..+ + |.|+.+.+|+||..+|+++++ ||||||+||++|||++|||+|++|...||+.||.|+ +
T Consensus 277 -~~~~~-~-----------p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rv-e 340 (406)
T COG1819 277 -DTLVN-V-----------PDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERV-E 340 (406)
T ss_pred -ccccc-C-----------CCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHH-H
Confidence 11111 2 789999999999999999998 999999999999999999999999999999999999 6
Q ss_pred hhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 048562 381 VLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALLQELKS 460 (464)
Q Consensus 381 ~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~~~~ 460 (464)
++|+|+.+..+ .++++.|+++|+++|+|+ .|+++++++++.+++ ++| .+.++++|+++.+
T Consensus 341 ~~G~G~~l~~~-----------~l~~~~l~~av~~vL~~~----~~~~~~~~~~~~~~~---~~g--~~~~a~~le~~~~ 400 (406)
T COG1819 341 ELGAGIALPFE-----------ELTEERLRAAVNEVLADD----SYRRAAERLAEEFKE---EDG--PAKAADLLEEFAR 400 (406)
T ss_pred HcCCceecCcc-----------cCCHHHHHHHHHHHhcCH----HHHHHHHHHHHHhhh---ccc--HHHHHHHHHHHHh
Confidence 99999999987 899999999999999998 999999999999994 666 4556888888655
Q ss_pred c
Q 048562 461 V 461 (464)
Q Consensus 461 ~ 461 (464)
.
T Consensus 401 ~ 401 (406)
T COG1819 401 E 401 (406)
T ss_pred c
Confidence 3
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2.7e-37 Score=321.86 Aligned_cols=371 Identities=28% Similarity=0.402 Sum_probs=237.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEE---EEecCC---CCCCCCCC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITI---KTLHLP---DDIEIPDT 80 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~---~~~~~~~~ 80 (464)
..+++++++|++||++|+..||+.|+++||+||++++.......... .. ...+.. ...++. +++.....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SK----SKSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-cc----ceeeeeeecChHHhhhhhhhhccchH
Confidence 56788899999999999999999999999999999987654433221 00 000111 001100 11110000
Q ss_pred ----CCcccHHHHHhhhHHHHHH----hh--hhCCCCEEEeCCCchhhHHHHHHcC-CCeEEEeccchHHHHHHHHHHhh
Q 048562 81 ----DMSATPRTDTSMLQEPLKS----LL--VDSRPDCIVHDMFHHWSADVINSMN-IPRIVFNGNCCFSRCILENVRKY 149 (464)
Q Consensus 81 ----~~~~~~~~~~~~~~~~l~~----~l--~~~~pD~Vi~D~~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~~~~~~ 149 (464)
............+...+++ .. ...++|++|+|.+..+...++.... ++..++...++........
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~---- 155 (496)
T KOG1192|consen 80 DDDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP---- 155 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc----
Confidence 0000011111112222222 11 2234999999987666666666654 7777776665554332211
Q ss_pred CCCCCCCCCCCceecCCCC-----CccccChhh------------------------h--------hhhccccEEEEcC-
Q 048562 150 KPHEKVSSDYEPFVVPGLP-----DKIELTALS------------------------F--------RFEEKSFGIVVNS- 191 (464)
Q Consensus 150 ~~~~~~~~~~~~~~~p~~~-----~~~~~~~~~------------------------~--------~~~~~~~~~~~~~- 191 (464)
....++|... ..+.+..+. . .......++..++
T Consensus 156 ---------~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 226 (496)
T KOG1192|consen 156 ---------SPLSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNAS 226 (496)
T ss_pred ---------CcccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCe
Confidence 1111222111 112221110 0 0001122344444
Q ss_pred ccccChHHHHHH-HhhhCCCCeEEeCcccccccCcchhhhcCCCCCCCccccccccCcCCC--CcEEEEecCCCC---CC
Q 048562 192 FYDLEPAYVEYF-KQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKET--NSVLYISFGSLA---RL 265 (464)
Q Consensus 192 ~~~l~~~~~~~~-~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~V~vs~GS~~---~~ 265 (464)
+..+++...... .... .++++.|||+....... ......+|++..+. +++|||||||+. ..
T Consensus 227 ~~~ln~~~~~~~~~~~~-~~~v~~IG~l~~~~~~~------------~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~l 293 (496)
T KOG1192|consen 227 FIFLNSNPLLDFEPRPL-LPKVIPIGPLHVKDSKQ------------KSPLPLEWLDILDESRHSVVYISFGSMVNSADL 293 (496)
T ss_pred EEEEccCcccCCCCCCC-CCCceEECcEEecCccc------------cccccHHHHHHHhhccCCeEEEECCcccccccC
Confidence 666665443333 2222 58899999998762211 11123445554433 489999999999 68
Q ss_pred CHHhHHHHHHHHhhC-CCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHH-hcccCceee
Q 048562 266 SPEQLLEIAYGLEAS-NHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLI-LEHTAVGGF 343 (464)
Q Consensus 266 ~~~~~~~~~~al~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~l-L~~~~~~~~ 343 (464)
+.++..+++.+|+++ +..|+|++... +... +++++.++ . ++||...+|+||.++ |.|+++++|
T Consensus 294 p~~~~~~l~~~l~~~~~~~FiW~~~~~----------~~~~--~~~~~~~~-~--~~nV~~~~W~PQ~~lll~H~~v~~F 358 (496)
T KOG1192|consen 294 PEEQKKELAKALESLQGVTFLWKYRPD----------DSIY--FPEGLPNR-G--RGNVVLSKWAPQNDLLLDHPAVGGF 358 (496)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEecCC----------cchh--hhhcCCCC-C--cCceEEecCCCcHHHhcCCCcCcEE
Confidence 999999999999999 88899999764 1100 22232221 1 568999999999999 599999999
Q ss_pred ccccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHH
Q 048562 344 MTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEA 423 (464)
Q Consensus 344 ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~ 423 (464)
|||||+||++|++++|||||++|+++||+.||++++ +.|.|..++.. ..+..++.+++.+++.++
T Consensus 359 vTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~-~~g~~~v~~~~-----------~~~~~~~~~~~~~il~~~--- 423 (496)
T KOG1192|consen 359 VTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLV-RHGGGGVLDKR-----------DLVSEELLEAIKEILENE--- 423 (496)
T ss_pred EECCcccHHHHHHhcCCceecCCccccchhHHHHHH-hCCCEEEEehh-----------hcCcHHHHHHHHHHHcCh---
Confidence 999999999999999999999999999999999995 88888888776 577766999999999988
Q ss_pred HHHHHHHHHHHHHHHH
Q 048562 424 AEMRRRAGELGEKAKN 439 (464)
Q Consensus 424 ~~~~~~a~~l~~~~~~ 439 (464)
+|+++++++++..++
T Consensus 424 -~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 424 -EYKEAAKRLSEILRD 438 (496)
T ss_pred -HHHHHHHHHHHHHHc
Confidence 999999999999883
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=9.9e-27 Score=230.46 Aligned_cols=323 Identities=17% Similarity=0.118 Sum_probs=205.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
|.||++.+.++.||++|.++||++|.++||+|+|++.....+.- ... ..++.+..++. .++. .......+
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~--l~~-----~~g~~~~~~~~-~~l~--~~~~~~~~ 70 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKT--IIE-----KENIPYYSISS-GKLR--RYFDLKNI 70 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccc--cCc-----ccCCcEEEEec-cCcC--CCchHHHH
Confidence 56899999999999999999999999999999999976543221 111 12455555542 1111 10011111
Q ss_pred HHHHh--hhHHHHHHhhhhCCCCEEEeCCCch--hhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCce
Q 048562 87 RTDTS--MLQEPLKSLLVDSRPDCIVHDMFHH--WSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPF 162 (464)
Q Consensus 87 ~~~~~--~~~~~l~~~l~~~~pD~Vi~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (464)
..... ...-+...++++.+||+|++...+. .+..+|+.+++|++.+...
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n--------------------------- 123 (352)
T PRK12446 71 KDPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESD--------------------------- 123 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCC---------------------------
Confidence 11111 1233455778999999999988665 4778999999999987322
Q ss_pred ecCCCCCccccChhhhhhhccccEEEEcCccccChHHHHHHHhhhCCCCeEEeCcccccccCcchhhhcCCCCCCCcccc
Q 048562 163 VVPGLPDKIELTALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKI 242 (464)
Q Consensus 163 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l 242 (464)
.+|++.+++. ...... ++-+|++. ...++..++.++|+-..+... ....+..
T Consensus 124 ~~~g~~nr~~--------~~~a~~-v~~~f~~~--------~~~~~~~k~~~tG~Pvr~~~~-----------~~~~~~~ 175 (352)
T PRK12446 124 MTPGLANKIA--------LRFASK-IFVTFEEA--------AKHLPKEKVIYTGSPVREEVL-----------KGNREKG 175 (352)
T ss_pred CCccHHHHHH--------HHhhCE-EEEEccch--------hhhCCCCCeEEECCcCCcccc-----------cccchHH
Confidence 2333322110 011111 22223221 122213577889954322110 0011111
Q ss_pred ccccCcCCCCcEEEEecCCCCCCCH-HhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCC
Q 048562 243 LSFLDSKETNSVLYISFGSLARLSP-EQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKR 321 (464)
Q Consensus 243 ~~~l~~~~~~~~V~vs~GS~~~~~~-~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~ 321 (464)
.+.+.-.+++++|+|..||.+.... +.+..++..+.. +.+++|++|.. . +.+.. .+ ..
T Consensus 176 ~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~-----------~----~~~~~-~~----~~ 234 (352)
T PRK12446 176 LAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKG-----------N----LDDSL-QN----KE 234 (352)
T ss_pred HHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCc-----------h----HHHHH-hh----cC
Confidence 2222323457799999999986332 344445554432 47899999875 1 11111 11 12
Q ss_pred cEEecCcc-c-HHHHhcccCceeeccccchhhHHHHHHcCCceeecccc-----cccchhHHHHHhhhcceEEecccccc
Q 048562 322 GLIIRGWA-P-QLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPIT-----AEQFSNEKLISDVLKIGVKVGSVNWV 394 (464)
Q Consensus 322 nv~v~~~v-p-q~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~-----~DQ~~na~~v~~~~G~G~~l~~~~~~ 394 (464)
++.+..|+ + ..+++.++++ +|||||.+|+.|++++|+|+|++|+. .||..||+.+ ++.|+|..+...
T Consensus 235 ~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l-~~~g~~~~l~~~--- 308 (352)
T PRK12446 235 GYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESF-ERQGYASVLYEE--- 308 (352)
T ss_pred CcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHH-HHCCCEEEcchh---
Confidence 55666887 4 6788999997 99999999999999999999999984 4899999999 599999999766
Q ss_pred CCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048562 395 SWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGE 432 (464)
Q Consensus 395 ~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~ 432 (464)
.++++.|.+++.++++|++ .|++++++
T Consensus 309 --------~~~~~~l~~~l~~ll~~~~---~~~~~~~~ 335 (352)
T PRK12446 309 --------DVTVNSLIKHVEELSHNNE---KYKTALKK 335 (352)
T ss_pred --------cCCHHHHHHHHHHHHcCHH---HHHHHHHH
Confidence 7999999999999998753 45544443
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=4e-24 Score=210.04 Aligned_cols=301 Identities=20% Similarity=0.233 Sum_probs=186.6
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCC--CCCCCcc
Q 048562 8 VEMFFFPYV-GGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEI--PDTDMSA 84 (464)
Q Consensus 8 ~~vl~~~~~-~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~ 84 (464)
|||+|...+ |.||+.+++.||++| |||+|+|++.....+.+.+. +....++.. .... .......
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~----------~~~~~~~~~-~~~~~~~~~~~~~ 67 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR----------FPVREIPGL-GPIQENGRLDRWK 67 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc----------cCEEEccCc-eEeccCCccchHH
Confidence 689998888 999999999999999 69999999988665444332 233333210 0001 0111111
Q ss_pred cHH------HHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCC
Q 048562 85 TPR------TDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSD 158 (464)
Q Consensus 85 ~~~------~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (464)
... .........+.+++++.+||+||+| +.+.+..+|+..|+|++.+........
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD-~~~~~~~aa~~~giP~i~i~~~~~~~~------------------ 128 (318)
T PF13528_consen 68 TVRNNIRWLARLARRIRREIRWLREFRPDLVISD-FYPLAALAARRAGIPVIVISNQYWFLH------------------ 128 (318)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEc-ChHHHHHHHHhcCCCEEEEEehHHccc------------------
Confidence 111 1122334566677888999999999 455577899999999999865432110
Q ss_pred CCceecCCCCCccccChhhhh-h-hccccEEEEcCccccChHHHHHHHhhhCCCCeEEeCcccccccCcchhhhcCCCCC
Q 048562 159 YEPFVVPGLPDKIELTALSFR-F-EEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTS 236 (464)
Q Consensus 159 ~~~~~~p~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~ 236 (464)
....++.-.....+....+. . .......+.-++. ..... ..++.++||+..+..
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~--~~~~~~~~p~~~~~~------------- 184 (318)
T PF13528_consen 129 -PNFWLPWDQDFGRLIERYIDRYHFPPADRRLALSFY--------PPLPP--FFRVPFVGPIIRPEI------------- 184 (318)
T ss_pred -ccCCcchhhhHHHHHHHhhhhccCCcccceecCCcc--------ccccc--cccccccCchhcccc-------------
Confidence 00111100000000000000 0 0111111111111 00000 123456676543211
Q ss_pred CCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCC-CceEEEEccCCCCCCCCcCCcccccCCchhHHHh
Q 048562 237 IDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASN-HSFIWVVGKIFQSPGTRKENGIEENWLPSGFEER 315 (464)
Q Consensus 237 ~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~ 315 (464)
.+.-. .+++.|+|++|..... .++++++..+ +.+++. +.. .. .+.
T Consensus 185 ------~~~~~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~----------~~----~~~----- 230 (318)
T PF13528_consen 185 ------RELPP--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPN----------AA----DPR----- 230 (318)
T ss_pred ------cccCC--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCC----------cc----ccc-----
Confidence 11111 2345899999888632 6667777776 555555 544 10 111
Q ss_pred hcCCCCcEEecCcc--cHHHHhcccCceeeccccchhhHHHHHHcCCceeeccc--ccccchhHHHHHhhhcceEEeccc
Q 048562 316 MGESKRGLIIRGWA--PQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPI--TAEQFSNEKLISDVLKIGVKVGSV 391 (464)
Q Consensus 316 ~~~~~~nv~v~~~v--pq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~--~~DQ~~na~~v~~~~G~G~~l~~~ 391 (464)
.+|+.+.+|. ...++|..+++ +|+|||.||++|+++.|+|+|++|. ..||..||+++ +++|+|+.++..
T Consensus 231 ----~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l-~~~G~~~~~~~~ 303 (318)
T PF13528_consen 231 ----PGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKL-EELGLGIVLSQE 303 (318)
T ss_pred ----CCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHH-HHCCCeEEcccc
Confidence 6799998876 56788988887 9999999999999999999999999 78999999999 699999999876
Q ss_pred cccCCCCCCCCccChHHHHHHHHHH
Q 048562 392 NWVSWSTEPSAAVGRDKVEVAVKRL 416 (464)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~ai~~i 416 (464)
+++++.|.++|+++
T Consensus 304 -----------~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 304 -----------DLTPERLAEFLERL 317 (318)
T ss_pred -----------cCCHHHHHHHHhcC
Confidence 89999999999875
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=2.9e-23 Score=203.57 Aligned_cols=327 Identities=17% Similarity=0.189 Sum_probs=209.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC-cEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGA-KSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh-~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
++|++...++.||+.|.++|+++|.++|+ +|.++.+....+..... ..++.++.++.. ++. ....+..+
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~-------~~~~~~~~I~~~-~~~--~~~~~~~~ 70 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK-------QYGIEFELIPSG-GLR--RKGSLKLL 70 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc-------ccCceEEEEecc-ccc--ccCcHHHH
Confidence 46888899999999999999999999999 58777665444333322 125666666522 111 11111112
Q ss_pred HHHHh--hhHHHHHHhhhhCCCCEEEeCCCch--hhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCce
Q 048562 87 RTDTS--MLQEPLKSLLVDSRPDCIVHDMFHH--WSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPF 162 (464)
Q Consensus 87 ~~~~~--~~~~~l~~~l~~~~pD~Vi~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (464)
.+.+. ....+.+++|++.+||+||.-..+. .+..+|..+|||.+.. +..
T Consensus 71 ~~~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ih---------------------------Eqn 123 (357)
T COG0707 71 KAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIH---------------------------EQN 123 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEE---------------------------ecC
Confidence 22221 2256778899999999999987665 5777888999999997 334
Q ss_pred ecCCCCCccccChhhhhhhccccEEEEcCccccChHHHHHHHhhhCCCCeEEeC-cccccccCcchhhhcCCCCCCCccc
Q 048562 163 VVPGLPDKIELTALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVG-PVSLCNRNIEDKAERGQKTSIDEGK 241 (464)
Q Consensus 163 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~ 241 (464)
..|++.+.+ ..+..-.+..+|.+.. ....+.++..+| |+...-.. .+..
T Consensus 124 ~~~G~ank~---------~~~~a~~V~~~f~~~~--------~~~~~~~~~~tG~Pvr~~~~~-------------~~~~ 173 (357)
T COG0707 124 AVPGLANKI---------LSKFAKKVASAFPKLE--------AGVKPENVVVTGIPVRPEFEE-------------LPAA 173 (357)
T ss_pred CCcchhHHH---------hHHhhceeeecccccc--------ccCCCCceEEecCcccHHhhc-------------cchh
Confidence 455544421 1111111222333211 111123467777 33221110 0111
Q ss_pred cccccCcCCCCcEEEEecCCCCCCC-HHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCC
Q 048562 242 ILSFLDSKETNSVLYISFGSLARLS-PEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESK 320 (464)
Q Consensus 242 l~~~l~~~~~~~~V~vs~GS~~~~~-~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 320 (464)
..++... .++++|+|..||.+... .+.+..+...+.+ +..+++.++.. .. +....... .
T Consensus 174 ~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~-----------~~-----~~~~~~~~--~ 233 (357)
T COG0707 174 EVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKN-----------DL-----EELKSAYN--E 233 (357)
T ss_pred hhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcc-----------hH-----HHHHHHHh--h
Confidence 1122111 15779999999998522 2223333333333 46888888776 11 12222221 2
Q ss_pred Cc-EEecCccc-HHHHhcccCceeeccccchhhHHHHHHcCCceeeccc-c---cccchhHHHHHhhhcceEEecccccc
Q 048562 321 RG-LIIRGWAP-QLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPI-T---AEQFSNEKLISDVLKIGVKVGSVNWV 394 (464)
Q Consensus 321 ~n-v~v~~~vp-q~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~-~---~DQ~~na~~v~~~~G~G~~l~~~~~~ 394 (464)
.+ +.+.+|++ ..++++-+++ +||++|.+|+.|++++|+|+|.+|. . .||..||..+ ++.|.|..++..
T Consensus 234 ~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l-~~~gaa~~i~~~--- 307 (357)
T COG0707 234 LGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFL-EKAGAALVIRQS--- 307 (357)
T ss_pred cCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHH-HhCCCEEEeccc---
Confidence 23 88888985 5778888887 9999999999999999999999997 3 3899999999 699999999886
Q ss_pred CCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048562 395 SWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGE 435 (464)
Q Consensus 395 ~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~ 435 (464)
.+|.+++.+.|.++++++++.+.|+++++++..
T Consensus 308 --------~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~ 340 (357)
T COG0707 308 --------ELTPEKLAELILRLLSNPEKLKAMAENAKKLGK 340 (357)
T ss_pred --------cCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 799999999999999987666666666665543
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.89 E-value=1.2e-21 Score=192.45 Aligned_cols=300 Identities=16% Similarity=0.157 Sum_probs=169.2
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeE-EEEecCCCCCCCCCC--CCcc
Q 048562 9 EMFFFPYV-GGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPIT-IKTLHLPDDIEIPDT--DMSA 84 (464)
Q Consensus 9 ~vl~~~~~-~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~--~~~~ 84 (464)
||+|...+ |.||+.|.++|+++|.+ ||+|+|+++......+... ++. +..+|.. .+..... ....
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~---------~~~~~~~~p~~-~~~~~~~~~~~~~ 69 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY---------GFKVFETFPGI-KLKGEDGKVNIVK 69 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh---------cCcceeccCCc-eEeecCCcCcHHH
Confidence 57887777 55999999999999999 9999999877644433333 222 2221100 0001000 1111
Q ss_pred cHHH--HH-hhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCc
Q 048562 85 TPRT--DT-SMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEP 161 (464)
Q Consensus 85 ~~~~--~~-~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (464)
.+.. .. ........+++++.+||+||+| +.+.+..+|+.+|||++.+......
T Consensus 70 ~l~~~~~~~~~~~~~~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~----------------------- 125 (321)
T TIGR00661 70 TLRNKEYSPKKAIRREINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT----------------------- 125 (321)
T ss_pred HHHhhccccHHHHHHHHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh-----------------------
Confidence 1110 00 1123455678889999999999 5555688999999999987542100
Q ss_pred eecCCCCCccccC-hhhhhhhcc-ccEEEEcCccccChHHHHHHHhhhCCCCeE--EeCcccccccCcchhhhcCCCCCC
Q 048562 162 FVVPGLPDKIELT-ALSFRFEEK-SFGIVVNSFYDLEPAYVEYFKQDLGNDKAW--FVGPVSLCNRNIEDKAERGQKTSI 237 (464)
Q Consensus 162 ~~~p~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~--~vGp~~~~~~~~~~~~~~~~~~~~ 237 (464)
..|+........ ...+..+.. ...+....+.... ... +.+. ..+|.
T Consensus 126 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--p~~~~~~~~~~------------------- 175 (321)
T TIGR00661 126 -RYPLKTDLIVYPTMAALRIFNERCERFIVPDYPFPY--------TIC--PKIIKNMEGPL------------------- 175 (321)
T ss_pred -cCCcccchhHHHHHHHHHHhccccceEeeecCCCCC--------CCC--ccccccCCCcc-------------------
Confidence 001110000000 000111111 1111111111000 000 0000 00010
Q ss_pred CccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhc
Q 048562 238 DEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMG 317 (464)
Q Consensus 238 ~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~ 317 (464)
...+..++... .++.|++.+|+.. ...+++++.+.+. +.+.++.. +. ....
T Consensus 176 ~~~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~----------~~----~~~~------ 226 (321)
T TIGR00661 176 IRYDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSY----------EV----AKNS------ 226 (321)
T ss_pred cchhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCC----------CC----Cccc------
Confidence 11122223222 2346777777754 2455677777654 22332222 11 1110
Q ss_pred CCCCcEEecCccc--HHHHhcccCceeeccccchhhHHHHHHcCCceeeccccc--ccchhHHHHHhhhcceEEeccccc
Q 048562 318 ESKRGLIIRGWAP--QLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITA--EQFSNEKLISDVLKIGVKVGSVNW 393 (464)
Q Consensus 318 ~~~~nv~v~~~vp--q~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~ 393 (464)
.++|+.+.+|.| ..+.|..+++ +|||||.+|++|++++|+|++++|... ||..||+.+ +++|+|+.++..
T Consensus 227 -~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l-~~~g~~~~l~~~-- 300 (321)
T TIGR00661 227 -YNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKL-EDLGCGIALEYK-- 300 (321)
T ss_pred -cCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHH-HHCCCEEEcChh--
Confidence 156899989997 4566666666 999999999999999999999999855 899999999 599999999775
Q ss_pred cCCCCCCCCccChHHHHHHHHHHhcCC
Q 048562 394 VSWSTEPSAAVGRDKVEVAVKRLMGTG 420 (464)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~ai~~il~~~ 420 (464)
++ ++.+++.++++|+
T Consensus 301 ---------~~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 301 ---------EL---RLLEAILDIRNMK 315 (321)
T ss_pred ---------hH---HHHHHHHhccccc
Confidence 44 6777787788776
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.84 E-value=6.1e-19 Score=176.10 Aligned_cols=320 Identities=14% Similarity=0.107 Sum_probs=191.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcch--hhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHA--LSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSA 84 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (464)
||||+|+..+..||...++.|+++|.++||+|++++.+... ..... .++.++.++.+ +.. ......
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~---------~g~~~~~~~~~-~~~--~~~~~~ 68 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK---------AGIEFHFIPSG-GLR--RKGSLA 68 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc---------CCCcEEEEecc-CcC--CCChHH
Confidence 58899999988899999999999999999999999886521 11111 14555555422 110 001111
Q ss_pred cHHH--HHhhhHHHHHHhhhhCCCCEEEeCCCch--hhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCC
Q 048562 85 TPRT--DTSMLQEPLKSLLVDSRPDCIVHDMFHH--WSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYE 160 (464)
Q Consensus 85 ~~~~--~~~~~~~~l~~~l~~~~pD~Vi~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (464)
.+.. ........+.+++++.+||+|++..... .+..+++..++|++......
T Consensus 69 ~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------------------ 124 (357)
T PRK00726 69 NLKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA------------------------ 124 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC------------------------
Confidence 1111 1123355677888999999999997432 35566778899998652110
Q ss_pred ceecCCCCCccccChhhhhhhccccEEEEcCccccChHHHHHHHhhhCCCCeEEeCcccccccCcchhhhcCCCCCCCcc
Q 048562 161 PFVVPGLPDKIELTALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEG 240 (464)
Q Consensus 161 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~ 240 (464)
.++ .. .+ + .....+.++..+ . .... .. ++.++.++|+....... . ...
T Consensus 125 ---~~~---~~---~r-~-~~~~~d~ii~~~-~---~~~~----~~-~~~~i~vi~n~v~~~~~--~----------~~~ 172 (357)
T PRK00726 125 ---VPG---LA---NK-L-LARFAKKVATAF-P---GAFP----EF-FKPKAVVTGNPVREEIL--A----------LAA 172 (357)
T ss_pred ---Ccc---HH---HH-H-HHHHhchheECc-h---hhhh----cc-CCCCEEEECCCCChHhh--c----------ccc
Confidence 000 00 00 0 011122222211 1 1110 01 25678888854322110 0 000
Q ss_pred ccccccCcCCCCcEEEEecCCCCCCCHHhHH-HHHHHHhhCCC--ceEEEEccCCCCCCCCcCCcccccCCchhHHHhhc
Q 048562 241 KILSFLDSKETNSVLYISFGSLARLSPEQLL-EIAYGLEASNH--SFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMG 317 (464)
Q Consensus 241 ~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~-~~~~al~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~ 317 (464)
.-.++ ...++.++|++..|+.. .+.+. .+.+++.++.. .++|.+|.. . . +.+.+...
T Consensus 173 ~~~~~-~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~~~~~~~~~~~~G~g-----------~----~-~~~~~~~~ 232 (357)
T PRK00726 173 PPARL-AGREGKPTLLVVGGSQG---ARVLNEAVPEALALLPEALQVIHQTGKG-----------D----L-EEVRAAYA 232 (357)
T ss_pred hhhhc-cCCCCCeEEEEECCcHh---HHHHHHHHHHHHHHhhhCcEEEEEcCCC-----------c----H-HHHHHHhh
Confidence 00111 21223456776666543 22233 33366665433 455666654 1 1 12222221
Q ss_pred CCCCcEEecCcc-cHHHHhcccCceeeccccchhhHHHHHHcCCceeeccc----ccccchhHHHHHhhhcceEEecccc
Q 048562 318 ESKRGLIIRGWA-PQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPI----TAEQFSNEKLISDVLKIGVKVGSVN 392 (464)
Q Consensus 318 ~~~~nv~v~~~v-pq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~G~~l~~~~ 392 (464)
..-++.+.+|+ +..+++..+++ +|+|+|.++++||+++|+|+|++|. ..||..|+..+ .+.|.|..+...
T Consensus 233 -~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i-~~~~~g~~~~~~- 307 (357)
T PRK00726 233 -AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARAL-VDAGAALLIPQS- 307 (357)
T ss_pred -cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHH-HHCCCEEEEEcc-
Confidence 13347888998 46789988888 9999999999999999999999997 46899999999 499999999876
Q ss_pred ccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHH
Q 048562 393 WVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRR 429 (464)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~ 429 (464)
.++++.|.++|.++++|++..+.++++
T Consensus 308 ----------~~~~~~l~~~i~~ll~~~~~~~~~~~~ 334 (357)
T PRK00726 308 ----------DLTPEKLAEKLLELLSDPERLEAMAEA 334 (357)
T ss_pred ----------cCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 678999999999999987333333333
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.81 E-value=4.5e-18 Score=169.21 Aligned_cols=326 Identities=15% Similarity=0.128 Sum_probs=190.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHH
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRT 88 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (464)
||++...+..||....+.+++.|.++||+|++++....... ... . ..+++++.++.+. . .....+..+..
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~~-~-----~~~~~~~~~~~~~-~--~~~~~~~~~~~ 70 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RLV-P-----KAGIPLHTIPVGG-L--RRKGSLKKLKA 70 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hcc-c-----ccCCceEEEEecC-c--CCCChHHHHHH
Confidence 58899999999999999999999999999999987643211 100 0 1135555554210 0 00011111111
Q ss_pred HH--hhhHHHHHHhhhhCCCCEEEeCCCch--hhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCceec
Q 048562 89 DT--SMLQEPLKSLLVDSRPDCIVHDMFHH--WSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVV 164 (464)
Q Consensus 89 ~~--~~~~~~l~~~l~~~~pD~Vi~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (464)
.. -.....+.+++++.+||+|++..... .+..+|+..++|++...... .
T Consensus 71 ~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~---------------------------~ 123 (350)
T cd03785 71 PFKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA---------------------------V 123 (350)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC---------------------------C
Confidence 11 12345677888889999999976433 45667888899998642110 0
Q ss_pred CCCCCccccChhhhhhhccccEEEEcCccccChHHHHHHHhhhCCCCeEEeCcccccccCcchhhhcCCCCCCCcccccc
Q 048562 165 PGLPDKIELTALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKILS 244 (464)
Q Consensus 165 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~ 244 (464)
++. . .+ ......+.+++.+-. ..+. ..+.++.++|+....... . .... .+
T Consensus 124 ~~~---~---~~--~~~~~~~~vi~~s~~-----~~~~----~~~~~~~~i~n~v~~~~~--~----------~~~~-~~ 173 (350)
T cd03785 124 PGL---A---NR--LLARFADRVALSFPE-----TAKY----FPKDKAVVTGNPVREEIL--A----------LDRE-RA 173 (350)
T ss_pred ccH---H---HH--HHHHhhCEEEEcchh-----hhhc----CCCCcEEEECCCCchHHh--h----------hhhh-HH
Confidence 000 0 00 001112333332211 1111 114567777753321100 0 0000 11
Q ss_pred ccCcCCCCcEEEEecCCCCCCC-HHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcE
Q 048562 245 FLDSKETNSVLYISFGSLARLS-PEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGL 323 (464)
Q Consensus 245 ~l~~~~~~~~V~vs~GS~~~~~-~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv 323 (464)
.+...+++.+|++..|+..... .+.+...+..+.+.+..+++.++.. ..+.+.+...+...|+
T Consensus 174 ~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g----------------~~~~l~~~~~~~~~~v 237 (350)
T cd03785 174 RLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG----------------DLEEVKKAYEELGVNY 237 (350)
T ss_pred hcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc----------------cHHHHHHHHhccCCCe
Confidence 2222233446666666654211 1222233344433344556666554 1122333332223689
Q ss_pred EecCcc-cHHHHhcccCceeeccccchhhHHHHHHcCCceeeccc----ccccchhHHHHHhhhcceEEeccccccCCCC
Q 048562 324 IIRGWA-PQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPI----TAEQFSNEKLISDVLKIGVKVGSVNWVSWST 398 (464)
Q Consensus 324 ~v~~~v-pq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~ 398 (464)
.+.+|+ +..++|..+++ +|+++|.+++.||+++|+|+|+.|. ..+|..|+..+. +.|.|..++..
T Consensus 238 ~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~-~~g~g~~v~~~------- 307 (350)
T cd03785 238 EVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALV-KAGAAVLIPQE------- 307 (350)
T ss_pred EEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHH-hCCCEEEEecC-------
Confidence 999998 56778988887 9999999999999999999999986 467899999994 99999999764
Q ss_pred CCCCccChHHHHHHHHHHhcCChHHHHHHHHHH
Q 048562 399 EPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAG 431 (464)
Q Consensus 399 ~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~ 431 (464)
+.+.+++.++|.++++|++..+.|.++++
T Consensus 308 ----~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 336 (350)
T cd03785 308 ----ELTPERLAAALLELLSDPERLKAMAEAAR 336 (350)
T ss_pred ----CCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 56899999999999988744444444443
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.72 E-value=1.4e-15 Score=151.18 Aligned_cols=318 Identities=16% Similarity=0.156 Sum_probs=174.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHH
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRT 88 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (464)
||+|++.+..||+.....|+++|.++||+|++++.+.... ..... ..++.++.++... +. .......+..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~~-----~~g~~~~~i~~~~-~~--~~~~~~~l~~ 71 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLVP-----KAGIEFYFIPVGG-LR--RKGSFRLIKT 71 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hcccc-----cCCCceEEEeccC-cC--CCChHHHHHH
Confidence 8999999999999988899999999999999998743211 00000 0245555554211 00 0111111111
Q ss_pred --HHhhhHHHHHHhhhhCCCCEEEeCCCch--hhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCceec
Q 048562 89 --DTSMLQEPLKSLLVDSRPDCIVHDMFHH--WSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVV 164 (464)
Q Consensus 89 --~~~~~~~~l~~~l~~~~pD~Vi~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (464)
........+.+++++.+||+|++..... .+..+++.+++|++.+.... .
T Consensus 72 ~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~---------------------------~ 124 (348)
T TIGR01133 72 PLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNA---------------------------V 124 (348)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCC---------------------------C
Confidence 1122345677889999999999986443 34556788899997531100 0
Q ss_pred CCCCCccccChhhhhhhccccEEEEcCccccChHHHHHHHhhhCCCCeEEeCcccccccCcchhhhcCCCCCCCcccccc
Q 048562 165 PGLPDKIELTALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKILS 244 (464)
Q Consensus 165 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~ 244 (464)
++. . .+ ......+.+++.+ ++. ...+ ...++|.-...... . .+.. .+
T Consensus 125 ~~~---~---~~--~~~~~~d~ii~~~-~~~--------~~~~---~~~~i~n~v~~~~~--~----------~~~~-~~ 171 (348)
T TIGR01133 125 PGL---T---NK--LLSRFAKKVLISF-PGA--------KDHF---EAVLVGNPVRQEIR--S----------LPVP-RE 171 (348)
T ss_pred ccH---H---HH--HHHHHhCeeEECc-hhH--------hhcC---CceEEcCCcCHHHh--c----------ccch-hh
Confidence 000 0 00 0011122232211 100 1111 12344421111000 0 0000 01
Q ss_pred ccCcCCCCcEEEEecCCCCCCCHHhHHH-HHHHHh---hCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCC
Q 048562 245 FLDSKETNSVLYISFGSLARLSPEQLLE-IAYGLE---ASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESK 320 (464)
Q Consensus 245 ~l~~~~~~~~V~vs~GS~~~~~~~~~~~-~~~al~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 320 (464)
.+...+++++|.+..|+.. .+.+.. +.++++ +.+.++++..++. . . +.+.+...+.+
T Consensus 172 ~~~~~~~~~~i~~~gg~~~---~~~~~~~l~~a~~~l~~~~~~~~~~~g~~-----------~----~-~~l~~~~~~~~ 232 (348)
T TIGR01133 172 RFGLREGKPTILVLGGSQG---AKILNELVPKALAKLAEKGIQIVHQTGKN-----------D----L-EKVKNVYQELG 232 (348)
T ss_pred hcCCCCCCeEEEEECCchh---HHHHHHHHHHHHHHHhhcCcEEEEECCcc-----------h----H-HHHHHHHhhCC
Confidence 1121223445555445544 222222 234443 3345666555443 1 1 12222222111
Q ss_pred CcEEecCcc--cHHHHhcccCceeeccccchhhHHHHHHcCCceeecccc---cccchhHHHHHhhhcceEEeccccccC
Q 048562 321 RGLIIRGWA--PQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPIT---AEQFSNEKLISDVLKIGVKVGSVNWVS 395 (464)
Q Consensus 321 ~nv~v~~~v--pq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~---~DQ~~na~~v~~~~G~G~~l~~~~~~~ 395 (464)
- ..++.|. +..+++..+++ +|+++|.+++.||+++|+|+|+.|.. .+|..|+..+ +..|.|..++..
T Consensus 233 l-~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i-~~~~~G~~~~~~---- 304 (348)
T TIGR01133 233 I-EAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFL-EDLGAGLVIRQK---- 304 (348)
T ss_pred c-eEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHH-HHCCCEEEEecc----
Confidence 1 1222343 56778888887 99999988999999999999999863 4688899999 599999998765
Q ss_pred CCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHH
Q 048562 396 WSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRA 430 (464)
Q Consensus 396 ~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a 430 (464)
+.++++|.++|.++++|++..+.|.+++
T Consensus 305 -------~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 332 (348)
T TIGR01133 305 -------ELLPEKLLEALLKLLLDPANLEAMAEAA 332 (348)
T ss_pred -------cCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 5689999999999999874333343333
No 35
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.69 E-value=2.5e-15 Score=151.34 Aligned_cols=333 Identities=14% Similarity=0.159 Sum_probs=184.1
Q ss_pred CCcEEEEEcCC-CccCHHHHHHHHHHHHhCCCcEEEEeCCcch--hhhhhhhhhccCCCCCe-EEEEecCCCCCC--C-C
Q 048562 6 SPVEMFFFPYV-GGGHQIPMVDIARIFAAHGAKSTIITSPKHA--LSFQKSINRNQQSGLPI-TIKTLHLPDDIE--I-P 78 (464)
Q Consensus 6 ~~~~vl~~~~~-~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~--~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~--~-~ 78 (464)
+++|||+++.. +.||..+..+|+++|.++||+|++++..... ..+...... .+ ..... .|..+. . .
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~~------~y~~~~~~-~~~~~~~~~~~ 75 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDLFGESHPVITEITKY------LYLKSYTI-GKELYRLFYYG 75 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEhHHhcchHHHHHHHH------HHHHHHHH-hHHHHHHHHhc
Confidence 46789999988 6699999999999999999997777553210 001110000 00 00000 000000 0 0
Q ss_pred CCCCc-ccHHHHH-hhhHHHHHHhhhhCCCCEEEeCCCchhhHHH--HHHcCCCeEEEeccchHHHHHHHHHHhhCCCCC
Q 048562 79 DTDMS-ATPRTDT-SMLQEPLKSLLVDSRPDCIVHDMFHHWSADV--INSMNIPRIVFNGNCCFSRCILENVRKYKPHEK 154 (464)
Q Consensus 79 ~~~~~-~~~~~~~-~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~--A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~ 154 (464)
..... ....... ......+.+++++.+||+||++.-......+ +..+++|++.+.+-.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~td~------------------ 137 (380)
T PRK13609 76 VEKIYDKKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVPELKKQTGISIPTYNVLTDF------------------ 137 (380)
T ss_pred cCcccchHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeCCC------------------
Confidence 00000 0111111 1225788999999999999998644432222 334568877542210
Q ss_pred CCCCCCceecCCCCCccccChhhhhhhccccEEEEcCccccChHHHHHHHh-hhCCCCeEEeC-cccccccCcchhhhcC
Q 048562 155 VSSDYEPFVVPGLPDKIELTALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQ-DLGNDKAWFVG-PVSLCNRNIEDKAERG 232 (464)
Q Consensus 155 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~v~~vG-p~~~~~~~~~~~~~~~ 232 (464)
+.... ......+.+++.+ ....+.+.. ...+.++..+| |+......
T Consensus 138 -----------~~~~~--------~~~~~ad~i~~~s-----~~~~~~l~~~gi~~~ki~v~G~p~~~~f~~-------- 185 (380)
T PRK13609 138 -----------CLHKI--------WVHREVDRYFVAT-----DHVKKVLVDIGVPPEQVVETGIPIRSSFEL-------- 185 (380)
T ss_pred -----------CCCcc--------cccCCCCEEEECC-----HHHHHHHHHcCCChhHEEEECcccChHHcC--------
Confidence 00000 0011233333322 111111111 11124566676 32110000
Q ss_pred CCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhC-CCceEEEEccCCCCCCCCcCCcccccCCchh
Q 048562 233 QKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEAS-NHSFIWVVGKIFQSPGTRKENGIEENWLPSG 311 (464)
Q Consensus 233 ~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~ 311 (464)
......+.+-+.-.+++++|++..|+.... ..+..+++++.+. +.++++..+.+ .. +-+.
T Consensus 186 ---~~~~~~~~~~~~l~~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~----------~~----~~~~ 246 (380)
T PRK13609 186 ---KINPDIIYNKYQLCPNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKN----------EA----LKQS 246 (380)
T ss_pred ---cCCHHHHHHHcCCCCCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCC----------HH----HHHH
Confidence 000111111122223456788877887632 2355667777654 56777766543 11 1122
Q ss_pred HHHhhcCCCCcEEecCcccH-HHHhcccCceeeccccchhhHHHHHHcCCceeec-ccccccchhHHHHHhhhcceEEec
Q 048562 312 FEERMGESKRGLIIRGWAPQ-LLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTW-PITAEQFSNEKLISDVLKIGVKVG 389 (464)
Q Consensus 312 ~~~~~~~~~~nv~v~~~vpq-~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~l~ 389 (464)
+.+...+.+.|+.+.+|+++ .+++..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|+|+..
T Consensus 247 l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~- 322 (380)
T PRK13609 247 LEDLQETNPDALKVFGYVENIDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVI- 322 (380)
T ss_pred HHHHHhcCCCcEEEEechhhHHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEE-
Confidence 33322222458999999976 578988887 99999989999999999999985 6777788999999 599998754
Q ss_pred cccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048562 390 SVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGE 432 (464)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~ 432 (464)
.+.+++.++|.++++|++..+.+++++++
T Consensus 323 --------------~~~~~l~~~i~~ll~~~~~~~~m~~~~~~ 351 (380)
T PRK13609 323 --------------RDDEEVFAKTEALLQDDMKLLQMKEAMKS 351 (380)
T ss_pred --------------CCHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 26789999999999987544444444443
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.68 E-value=2.8e-15 Score=150.71 Aligned_cols=348 Identities=14% Similarity=0.061 Sum_probs=201.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
.||++...++.||++|. .|+++|.++|++|.|++.... .+++.+.. ..+.+..++. . .+...+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~-----~~~~~~~l~v------~--G~~~~l~ 69 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCE-----VLYSMEELSV------M--GLREVLG 69 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCc-----cccChHHhhh------c--cHHHHHH
Confidence 67999999999999999 999999999999999986532 33333100 0122222221 0 1111111
Q ss_pred H--HHhhhHHHHHHhhhhCCCCEEEeCCCch-h--hHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCce
Q 048562 88 T--DTSMLQEPLKSLLVDSRPDCIVHDMFHH-W--SADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPF 162 (464)
Q Consensus 88 ~--~~~~~~~~l~~~l~~~~pD~Vi~D~~~~-~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (464)
. .......+..+++++.+||+||.-.+.. . ....|+.+|||++.+.+-....+.
T Consensus 70 ~~~~~~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~waw~--------------------- 128 (385)
T TIGR00215 70 RLGRLLKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWAWR--------------------- 128 (385)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhhcC---------------------
Confidence 1 1122356788889999999999966532 2 333788899999987422111110
Q ss_pred ecCCCCCccccChhhhhhhc-cccEEEEcCccccChHHHHHHHhhhCCCCeEEeCcccccccCcchhhhcCCCCCCCccc
Q 048562 163 VVPGLPDKIELTALSFRFEE-KSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGK 241 (464)
Q Consensus 163 ~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~ 241 (464)
+... +.+. ..+.+++ .++ .+..++ .. . +.+..+||.-........ ....++
T Consensus 129 ---~~~~---------r~l~~~~d~v~~-~~~-~e~~~~---~~-~-g~~~~~vGnPv~~~~~~~---------~~~~~~ 180 (385)
T TIGR00215 129 ---KWRA---------KKIEKATDFLLA-ILP-FEKAFY---QK-K-NVPCRFVGHPLLDAIPLY---------KPDRKS 180 (385)
T ss_pred ---cchH---------HHHHHHHhHhhc-cCC-CcHHHH---Hh-c-CCCEEEECCchhhhcccc---------CCCHHH
Confidence 0000 0111 1111111 121 222222 21 2 345667883221110000 001111
Q ss_pred cccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhC-----CCceEEEEccCCCCCCCCcCCcccccCCchhHHHhh
Q 048562 242 ILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEAS-----NHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERM 316 (464)
Q Consensus 242 l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~ 316 (464)
..+-+.-.+++++|.+..||....-......+++++..+ +.++++..... . ..+.+.+..
T Consensus 181 ~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~-----------~----~~~~~~~~~ 245 (385)
T TIGR00215 181 AREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNF-----------K----RRLQFEQIK 245 (385)
T ss_pred HHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCc-----------h----hHHHHHHHH
Confidence 122222233466888888888642233344555555432 33455544332 0 111111111
Q ss_pred cCC--CCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeec----cccc---------ccchhHHHHHhh
Q 048562 317 GES--KRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTW----PITA---------EQFSNEKLISDV 381 (464)
Q Consensus 317 ~~~--~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~----P~~~---------DQ~~na~~v~~~ 381 (464)
.+. ...+....+ +..+++..+++ +|+-+|..|+ |++++|+|+|++ |+.. +|..|+..++ .
T Consensus 246 ~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~-~ 320 (385)
T TIGR00215 246 AEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILA-N 320 (385)
T ss_pred HHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhc-C
Confidence 100 122333222 44568888887 9999999988 999999999999 8632 3888999995 9
Q ss_pred hcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 048562 382 LKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTG----EEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALL 455 (464)
Q Consensus 382 ~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~----~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~ 455 (464)
.++...+-.. .++++.|.+++.+++.|+ ++.+.+++..+++++++. ++|++...++.++
T Consensus 321 ~~~~pel~q~-----------~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~a~~i~ 383 (385)
T TIGR00215 321 RLLVPELLQE-----------ECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIY----CNADSERAAQAVL 383 (385)
T ss_pred CccchhhcCC-----------CCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHh
Confidence 9998888655 799999999999999998 888888888888888875 4455554444444
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.67 E-value=9.5e-15 Score=140.31 Aligned_cols=258 Identities=15% Similarity=0.156 Sum_probs=150.2
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHH
Q 048562 17 GGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEP 96 (464)
Q Consensus 17 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (464)
|.||+.+++.||++|.++||+|+|++........... . ..++.+..++.+.+ .. .-...
T Consensus 13 G~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i-~-----~~g~~v~~~~~~~~-----------~~----~d~~~ 71 (279)
T TIGR03590 13 GLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLL-L-----SAGFPVYELPDESS-----------RY----DDALE 71 (279)
T ss_pred cccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHH-H-----HcCCeEEEecCCCc-----------hh----hhHHH
Confidence 8999999999999999999999999987544322211 1 12566666542100 01 11334
Q ss_pred HHHhhhhCCCCEEEeCCCchh--hHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCceecCCCCCccccC
Q 048562 97 LKSLLVDSRPDCIVHDMFHHW--SADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVVPGLPDKIELT 174 (464)
Q Consensus 97 l~~~l~~~~pD~Vi~D~~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 174 (464)
+.+++++.+||+||+|.+... -....+..+.+.+.+.-.. ..+. .
T Consensus 72 ~~~~l~~~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~----------------------~~~~----~------- 118 (279)
T TIGR03590 72 LINLLEEEKFDILIVDHYGLDADWEKLIKEFGRKILVIDDLA----------------------DRPH----D------- 118 (279)
T ss_pred HHHHHHhcCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCC----------------------CCCc----C-------
Confidence 777888889999999987542 2233444566666651110 0000 0
Q ss_pred hhhhhhhccccEEEEcCccccChHHHHHHHhhhCCCCeEEeCcccccccCcchhhhcCCCCCCCcccccccc---CcCCC
Q 048562 175 ALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFL---DSKET 251 (464)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~ 251 (464)
.+ +++|.-...+. ..+. ...+....++.||--.+ +++++.+.- ...++
T Consensus 119 ---------~D-~vin~~~~~~~--~~y~-~~~~~~~~~l~G~~Y~~----------------lr~eF~~~~~~~~~~~~ 169 (279)
T TIGR03590 119 ---------CD-LLLDQNLGADA--SDYQ-GLVPANCRLLLGPSYAL----------------LREEFYQLATANKRRKP 169 (279)
T ss_pred ---------CC-EEEeCCCCcCH--hHhc-ccCcCCCeEEecchHHh----------------hhHHHHHhhHhhhcccc
Confidence 11 12222111111 1111 00101234566751111 111111000 00012
Q ss_pred CcEEEEecCCCCCCCHHhHHHHHHHHhh--CCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcc
Q 048562 252 NSVLYISFGSLARLSPEQLLEIAYGLEA--SNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWA 329 (464)
Q Consensus 252 ~~~V~vs~GS~~~~~~~~~~~~~~al~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~v 329 (464)
.+.|++++|...... ....+++++.+ .+.++.+++|.. . . ..+.+.+.... .+|+.+..++
T Consensus 170 ~~~iLi~~GG~d~~~--~~~~~l~~l~~~~~~~~i~vv~G~~------~----~----~~~~l~~~~~~-~~~i~~~~~~ 232 (279)
T TIGR03590 170 LRRVLVSFGGADPDN--LTLKLLSALAESQINISITLVTGSS------N----P----NLDELKKFAKE-YPNIILFIDV 232 (279)
T ss_pred cCeEEEEeCCcCCcC--HHHHHHHHHhccccCceEEEEECCC------C----c----CHHHHHHHHHh-CCCEEEEeCH
Confidence 357899998665422 34455666665 355777888765 1 1 22233332221 5689999999
Q ss_pred cH-HHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhHHH
Q 048562 330 PQ-LLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKL 377 (464)
Q Consensus 330 pq-~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~ 377 (464)
++ .+++..+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 233 ~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 233 ENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 86 589988888 999999 9999999999999999999999999975
No 38
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.65 E-value=3.8e-14 Score=133.29 Aligned_cols=328 Identities=16% Similarity=0.212 Sum_probs=194.1
Q ss_pred CCcEEEEEcCC--CccCHHHHHHHHHHHHhC--CCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCC----CCCCC
Q 048562 6 SPVEMFFFPYV--GGGHQIPMVDIARIFAAH--GAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLP----DDIEI 77 (464)
Q Consensus 6 ~~~~vl~~~~~--~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~ 77 (464)
+++||+|++.- |.||+..++.||..|++. |.+|+++++.....-+.-. .+++++.+|.- ++..
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~--------~gVd~V~LPsl~k~~~G~~- 78 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGP--------AGVDFVKLPSLIKGDNGEY- 78 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCc--------ccCceEecCceEecCCCce-
Confidence 46699999966 999999999999999998 9999999987654433321 36888888621 1111
Q ss_pred CCCCCcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCC
Q 048562 78 PDTDMSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSS 157 (464)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (464)
...+.-...-........-+...+++.+||++|+|.+-. +. -..+ .|. ..+... .
T Consensus 79 ~~~d~~~~l~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~-Gl--r~EL-~pt-------------L~yl~~--------~ 133 (400)
T COG4671 79 GLVDLDGDLEETKKLRSQLILSTAETFKPDIFIVDKFPF-GL--RFEL-LPT-------------LEYLKT--------T 133 (400)
T ss_pred eeeecCCCHHHHHHHHHHHHHHHHHhcCCCEEEEecccc-ch--hhhh-hHH-------------HHHHhh--------c
Confidence 000111111222222345566777789999999995533 21 0000 000 001000 0
Q ss_pred CCCc-eecCC---CCCccccChhh---hhhhcccc-EEEEc---CccccChHHHHHHHhhhCCCCeEEeCcccccccCcc
Q 048562 158 DYEP-FVVPG---LPDKIELTALS---FRFEEKSF-GIVVN---SFYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNRNIE 226 (464)
Q Consensus 158 ~~~~-~~~p~---~~~~~~~~~~~---~~~~~~~~-~~~~~---~~~~l~~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~ 226 (464)
...+ ..+.. .|....-.|++ ...+.+.+ .+.+- .|.++...+ +.... . ..++.|+|-+..+-+..
T Consensus 134 ~t~~vL~lr~i~D~p~~~~~~w~~~~~~~~I~r~yD~V~v~GdP~f~d~~~~~-~~~~~-i-~~k~~ytG~vq~~~~~~- 209 (400)
T COG4671 134 GTRLVLGLRSIRDIPQELEADWRRAETVRLINRFYDLVLVYGDPDFYDPLTEF-PFAPA-I-RAKMRYTGFVQRSLPHL- 209 (400)
T ss_pred CCcceeehHhhhhchhhhccchhhhHHHHHHHHhheEEEEecCccccChhhcC-CccHh-h-hhheeEeEEeeccCcCC-
Confidence 0000 01111 11111112221 12233322 23332 233333222 11222 2 36888999662110000
Q ss_pred hhhhcCCCCCCCccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhh-CCCc--eEEEEccCCCCCCCCcCCcc
Q 048562 227 DKAERGQKTSIDEGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEA-SNHS--FIWVVGKIFQSPGTRKENGI 303 (464)
Q Consensus 227 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~-~~~~--~v~~~~~~~~~~~~~~~~~~ 303 (464)
. .+ +... .++-.|+||-|--.. ..+.+...++|-.. .+.+ .+..+|+.
T Consensus 210 ------~----~p-----~~~~-pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~ivtGP~------------ 260 (400)
T COG4671 210 ------P----LP-----PHEA-PEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLIVTGPF------------ 260 (400)
T ss_pred ------C----CC-----CcCC-CccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEEEeCCC------------
Confidence 0 00 1111 233478888776542 35566666666554 3444 44445554
Q ss_pred cccCCchhHHHhhcC-CC--CcEEecCccc-HHHHhcccCceeeccccchhhHHHHHHcCCceeecccc---cccchhHH
Q 048562 304 EENWLPSGFEERMGE-SK--RGLIIRGWAP-QLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPIT---AEQFSNEK 376 (464)
Q Consensus 304 ~~~~lp~~~~~~~~~-~~--~nv~v~~~vp-q~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~---~DQ~~na~ 376 (464)
+|+...+++.+ ++ +++.+..|-. ...++.-++. +|+-||+||+||-|.+|+|.+++|.. .||-.-|.
T Consensus 261 ----MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~ 334 (400)
T COG4671 261 ----MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQ 334 (400)
T ss_pred ----CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHH
Confidence 77555544321 23 7899999975 5778877777 99999999999999999999999984 49999999
Q ss_pred HHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhc
Q 048562 377 LISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMG 418 (464)
Q Consensus 377 ~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~ 418 (464)
|+ +++|+--.+-.+ ++++..++++|...++
T Consensus 335 Rl-~~LGL~dvL~pe-----------~lt~~~La~al~~~l~ 364 (400)
T COG4671 335 RL-EELGLVDVLLPE-----------NLTPQNLADALKAALA 364 (400)
T ss_pred HH-HhcCcceeeCcc-----------cCChHHHHHHHHhccc
Confidence 99 699999999887 8999999999999998
No 39
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.60 E-value=4.4e-14 Score=142.66 Aligned_cols=149 Identities=15% Similarity=0.224 Sum_probs=105.4
Q ss_pred CCcEEEEecCCCCCCCHHhHHHHHHHHhh--CCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCc
Q 048562 251 TNSVLYISFGSLARLSPEQLLEIAYGLEA--SNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGW 328 (464)
Q Consensus 251 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~ 328 (464)
++++|++..|+... ...+..+++++.+ .+.++++.+|.+ .. +-+.+.+... ..+++.+.+|
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~----------~~----l~~~l~~~~~-~~~~v~~~G~ 263 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKS----------KE----LKRSLTAKFK-SNENVLILGY 263 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCC----------HH----HHHHHHHHhc-cCCCeEEEec
Confidence 45688888898863 2345555555432 245666666554 11 1112222221 1457888899
Q ss_pred ccH-HHHhcccCceeeccccchhhHHHHHHcCCceeec-ccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccCh
Q 048562 329 APQ-LLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTW-PITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGR 406 (464)
Q Consensus 329 vpq-~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~ 406 (464)
+++ .+++..+++ +|+..|..|+.||+++|+|+|+. |..++|..|+..+ ++.|+|+.. -+.
T Consensus 264 ~~~~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~---------------~~~ 325 (391)
T PRK13608 264 TKHMNEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIA---------------DTP 325 (391)
T ss_pred cchHHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEe---------------CCH
Confidence 864 568888888 99998888999999999999998 7767788999999 599999875 267
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 048562 407 DKVEVAVKRLMGTGEEAAEMRRRAGELG 434 (464)
Q Consensus 407 ~~l~~ai~~il~~~~~~~~~~~~a~~l~ 434 (464)
+++.++|.++++|++..+.|+++++++.
T Consensus 326 ~~l~~~i~~ll~~~~~~~~m~~~~~~~~ 353 (391)
T PRK13608 326 EEAIKIVASLTNGNEQLTNMISTMEQDK 353 (391)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 8899999999998765556666665543
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.58 E-value=2.1e-13 Score=137.30 Aligned_cols=335 Identities=13% Similarity=0.090 Sum_probs=171.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
|+||+|...+..||+.|.. ++++|.++++++.+++.... .++..... ..+.++.++ .. .....+
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~l~------~~--g~~~~~ 64 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGCE-----SLFDMEELA------VM--GLVEVL 64 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCCc-----cccCHHHhh------hc--cHHHHH
Confidence 4689999999999999999 99999999888888875331 22322000 012222221 11 111111
Q ss_pred H--HHHhhhHHHHHHhhhhCCCCEEEeCCCc-hh--hHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCc
Q 048562 87 R--TDTSMLQEPLKSLLVDSRPDCIVHDMFH-HW--SADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEP 161 (464)
Q Consensus 87 ~--~~~~~~~~~l~~~l~~~~pD~Vi~D~~~-~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (464)
. .........+++++++.+||+|++-.+. .+ ....|+..|||++.+.... .+
T Consensus 65 ~~~~~~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~--~~--------------------- 121 (380)
T PRK00025 65 PRLPRLLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS--VW--------------------- 121 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc--hh---------------------
Confidence 1 1112245678888999999999874332 12 2344677899988763221 00
Q ss_pred eecCCCCCccccChhhhhhhccccEEEEcCccccChHHHHHHHhhhCCCCeEEeCcccccccCcchhhhcCCCCCCCccc
Q 048562 162 FVVPGLPDKIELTALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGK 241 (464)
Q Consensus 162 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~ 241 (464)
...++. . + ......+.+++.+ . ..... +.. . +.++.++|.-....... .....+
T Consensus 122 ~~~~~~---~----~--~~~~~~d~i~~~~-~-~~~~~---~~~-~-g~~~~~~G~p~~~~~~~----------~~~~~~ 175 (380)
T PRK00025 122 AWRQGR---A----F--KIAKATDHVLALF-P-FEAAF---YDK-L-GVPVTFVGHPLADAIPL----------LPDRAA 175 (380)
T ss_pred hcCchH---H----H--HHHHHHhhheeCC-c-cCHHH---HHh-c-CCCeEEECcCHHHhccc----------ccChHH
Confidence 000100 0 0 0111222333222 1 11222 121 2 23467777321110000 001111
Q ss_pred cccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhC-----CCceEEEEccCCCCCCCCcCCcccccCCchhHHHhh
Q 048562 242 ILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEAS-----NHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERM 316 (464)
Q Consensus 242 l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~ 316 (464)
+.+-+.-.+++++|++..||...........+++++..+ +.+++++.+.. . .-+.+.+..
T Consensus 176 ~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~-----------~----~~~~~~~~~ 240 (380)
T PRK00025 176 ARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNP-----------K----RREQIEEAL 240 (380)
T ss_pred HHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCh-----------h----hHHHHHHHH
Confidence 222222222345667767765432112234445554432 34667765422 0 112222222
Q ss_pred cCC-CCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeeccccc--------ccchh-----HHHHHhhh
Q 048562 317 GES-KRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITA--------EQFSN-----EKLISDVL 382 (464)
Q Consensus 317 ~~~-~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~--------DQ~~n-----a~~v~~~~ 382 (464)
.+. .-++.+.. -.-.+++..+++ +|+.+|.+++ |++++|+|+|+.|-.. .|..| +..+ ...
T Consensus 241 ~~~~~~~v~~~~-~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 315 (380)
T PRK00025 241 AEYAGLEVTLLD-GQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLL-AGR 315 (380)
T ss_pred hhcCCCCeEEEc-ccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHh-cCC
Confidence 211 11333322 134678888887 9999999888 9999999999985321 12111 1222 133
Q ss_pred cceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 048562 383 KIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKA 437 (464)
Q Consensus 383 G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~ 437 (464)
+++..+... ..+++.|.+++.++++|++..+.+.++++++.+.+
T Consensus 316 ~~~~~~~~~-----------~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 359 (380)
T PRK00025 316 ELVPELLQE-----------EATPEKLARALLPLLADGARRQALLEGFTELHQQL 359 (380)
T ss_pred CcchhhcCC-----------CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 333333322 57899999999999999866666666665555543
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.51 E-value=1e-15 Score=135.77 Aligned_cols=137 Identities=17% Similarity=0.237 Sum_probs=97.7
Q ss_pred EEEEecCCCCCCC-HHhHHHHHHHHhh--CCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCccc
Q 048562 254 VLYISFGSLARLS-PEQLLEIAYGLEA--SNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAP 330 (464)
Q Consensus 254 ~V~vs~GS~~~~~-~~~~~~~~~al~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vp 330 (464)
+|+|+.||..... .+.+..++..+.. ...++++++|.. ...+ .... ......++.+.+|.+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~-----------~~~~-~~~~----~~~~~~~v~~~~~~~ 64 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKN-----------NYEE-LKIK----VENFNPNVKVFGFVD 64 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTC-----------ECHH-HCCC----HCCTTCCCEEECSSS
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCC-----------cHHH-HHHH----HhccCCcEEEEechh
Confidence 4899999887421 1122223333322 257888888875 1111 1111 111136899999999
Q ss_pred -HHHHhcccCceeeccccchhhHHHHHHcCCceeeccccc----ccchhHHHHHhhhcceEEeccccccCCCCCCCCccC
Q 048562 331 -QLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITA----EQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVG 405 (464)
Q Consensus 331 -q~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~----DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~ 405 (464)
..+++..+++ +|||||.+|++|++++|+|+|++|... +|..||..+ ++.|+|..+... ..+
T Consensus 65 ~m~~~m~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~~~~-----------~~~ 130 (167)
T PF04101_consen 65 NMAELMAAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIMLDES-----------ELN 130 (167)
T ss_dssp SHHHHHHHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCSECC-----------C-S
T ss_pred hHHHHHHHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCccccCcc-----------cCC
Confidence 8899999998 999999999999999999999999988 999999999 499999999876 677
Q ss_pred hHHHHHHHHHHhcCC
Q 048562 406 RDKVEVAVKRLMGTG 420 (464)
Q Consensus 406 ~~~l~~ai~~il~~~ 420 (464)
.+.|.++|.+++.++
T Consensus 131 ~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 131 PEELAEAIEELLSDP 145 (167)
T ss_dssp CCCHHHHHHCHCCCH
T ss_pred HHHHHHHHHHHHcCc
Confidence 999999999999986
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.40 E-value=1.1e-10 Score=117.75 Aligned_cols=324 Identities=15% Similarity=0.057 Sum_probs=169.6
Q ss_pred CccCHHHHHHHHHHHHh--CCCcEE---EEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHh
Q 048562 17 GGGHQIPMVDIARIFAA--HGAKST---IITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTS 91 (464)
Q Consensus 17 ~~GH~~p~l~la~~L~~--rGh~Vt---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (464)
|.|-=.-.+.||++|.+ .|++|. |+++....+ +.... ..| .+..+|. -++. .......+.+...
T Consensus 6 ghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e---~~~ip--~~g---~~~~~~s-gg~~--~~~~~~~~~~~~~ 74 (396)
T TIGR03492 6 GHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQ---NLGIP--IIG---PTKELPS-GGFS--YQSLRGLLRDLRA 74 (396)
T ss_pred CchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHh---hCCCc--eeC---CCCCCCC-CCcc--CCCHHHHHHHHHh
Confidence 44445567889999998 699999 998874432 11000 001 2222221 1111 1111111222222
Q ss_pred ---hhHHHHHHhhhhC--CCCEEEeCCCchhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCceecCC
Q 048562 92 ---MLQEPLKSLLVDS--RPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVVPG 166 (464)
Q Consensus 92 ---~~~~~l~~~l~~~--~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 166 (464)
....+-..++++. +||+||+-.-+. ...+|+..|+|++.+.+.-...+ ... .+ .....+.-...||
T Consensus 75 gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~-----~~~-~~--~~~~~~~~~~~~G 145 (396)
T TIGR03492 75 GLVGLTLGQWRALRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYY-----WES-GP--RRSPSDEYHRLEG 145 (396)
T ss_pred hHHHHHHHHHHHHHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEeecccee-----ecC-CC--CCccchhhhccCC
Confidence 1122333556666 999999997776 78889999999999643210000 000 00 0000000001133
Q ss_pred CCCccccChhhhhhh-ccccEEEEcCccccChHHHHHHHhhhCCCCeEEeCcccccccCcchhhhcCCCCCCCccccccc
Q 048562 167 LPDKIELTALSFRFE-EKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKILSF 245 (464)
Q Consensus 167 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 245 (464)
... .+|...... ..+..+++ .+ +... +++.. . +.++.+||--..+.-.. ... ..
T Consensus 146 ~~~---~p~e~n~l~~~~a~~v~~-~~-~~t~---~~l~~-~-g~k~~~vGnPv~d~l~~------------~~~--~~- 200 (396)
T TIGR03492 146 SLY---LPWERWLMRSRRCLAVFV-RD-RLTA---RDLRR-Q-GVRASYLGNPMMDGLEP------------PER--KP- 200 (396)
T ss_pred Ccc---CHHHHHHhhchhhCEEeC-CC-HHHH---HHHHH-C-CCeEEEeCcCHHhcCcc------------ccc--cc-
Confidence 221 111111112 12222222 22 1222 22332 2 46889999322221100 000 01
Q ss_pred cCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhC----CCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCC--
Q 048562 246 LDSKETNSVLYISFGSLARLSPEQLLEIAYGLEAS----NHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGES-- 319 (464)
Q Consensus 246 l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~-- 319 (464)
+ .+++++|.+-.||-.......+..+++++..+ +..|++.+.+. .+ . +.+.+...+.
T Consensus 201 l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~----------~~----~-~~~~~~l~~~g~ 263 (396)
T TIGR03492 201 L--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPS----------LS----L-EKLQAILEDLGW 263 (396)
T ss_pred c--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCC----------CC----H-HHHHHHHHhcCc
Confidence 1 22346888888998643333344555555553 56788877433 01 1 1111111100
Q ss_pred --------------CCcEEecCcc-cHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhHHHHHhhh--
Q 048562 320 --------------KRGLIIRGWA-PQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVL-- 382 (464)
Q Consensus 320 --------------~~nv~v~~~v-pq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~-- 382 (464)
.+++.+..+. +..+++..+++ +|+-+|..| .|+...|+|+|++|.-..|. |+... ++.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~-~~~~~ 338 (396)
T TIGR03492 264 QLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA-EAQSR 338 (396)
T ss_pred eecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH-HhhHh
Confidence 1235554554 45778888888 999999877 99999999999999877776 98877 454
Q ss_pred --cceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCC
Q 048562 383 --KIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTG 420 (464)
Q Consensus 383 --G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~ 420 (464)
|.++.+.. .+.+.|.+++.++++|+
T Consensus 339 l~g~~~~l~~-------------~~~~~l~~~l~~ll~d~ 365 (396)
T TIGR03492 339 LLGGSVFLAS-------------KNPEQAAQVVRQLLADP 365 (396)
T ss_pred hcCCEEecCC-------------CCHHHHHHHHHHHHcCH
Confidence 66666633 45699999999999986
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.37 E-value=2.1e-10 Score=115.59 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=69.4
Q ss_pred CcEEecCccc-HHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccc-hhHHHHHhhhcceEEeccccccCCCC
Q 048562 321 RGLIIRGWAP-QLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQF-SNEKLISDVLKIGVKVGSVNWVSWST 398 (464)
Q Consensus 321 ~nv~v~~~vp-q~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~-~na~~v~~~~G~G~~l~~~~~~~~~~ 398 (464)
.++.+.+|++ ..+++..+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+. +.|.|..+
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~-~~g~g~~~---------- 331 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVV-DNGFGAFS---------- 331 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHH-hCCceeec----------
Confidence 4688889987 4678888887 999999999999999999999998766665 7999994 89999754
Q ss_pred CCCCccChHHHHHHHHHHhcC-C
Q 048562 399 EPSAAVGRDKVEVAVKRLMGT-G 420 (464)
Q Consensus 399 ~~~~~~~~~~l~~ai~~il~~-~ 420 (464)
-+++.|.++|.+++.| +
T Consensus 332 -----~~~~~la~~i~~ll~~~~ 349 (382)
T PLN02605 332 -----ESPKEIARIVAEWFGDKS 349 (382)
T ss_pred -----CCHHHHHHHHHHHHcCCH
Confidence 2789999999999987 5
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.31 E-value=1.2e-09 Score=108.04 Aligned_cols=95 Identities=17% Similarity=0.156 Sum_probs=71.6
Q ss_pred CCcEEecCcccHHH---HhcccCceeeccccc----hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecccc
Q 048562 320 KRGLIIRGWAPQLL---ILEHTAVGGFMTHCG----WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVN 392 (464)
Q Consensus 320 ~~nv~v~~~vpq~~---lL~~~~~~~~ItHGG----~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 392 (464)
..|+.+.+|+++.+ ++..+++ +|+.+. .+++.||+++|+|+|+.+.. .+...+ +..+.|..++.
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i-~~~~~g~~~~~-- 316 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIV-TDGENGLLVEP-- 316 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----Cchhhh-cCCcceEEcCC--
Confidence 67899999998655 6777777 775543 47899999999999987744 355667 57788988855
Q ss_pred ccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 048562 393 WVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELG 434 (464)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 434 (464)
-+.+++.++|.+++.|++..+.+.+++.+..
T Consensus 317 -----------~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 317 -----------GDAEAFAAALAALLADPELRRRMAARARAEA 347 (364)
T ss_pred -----------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 3778899999999999865555555555444
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.27 E-value=1.8e-09 Score=111.78 Aligned_cols=142 Identities=19% Similarity=0.151 Sum_probs=92.6
Q ss_pred EEEEecCCCCCCCHHhHHHHHHHHhhC-CCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHH
Q 048562 254 VLYISFGSLARLSPEQLLEIAYGLEAS-NHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQL 332 (464)
Q Consensus 254 ~V~vs~GS~~~~~~~~~~~~~~al~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~ 332 (464)
.+++..|++. ....+..++++++.. +.++++ +|.. . ..+.+.+... ..++...+|+++.
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~i-vG~G-----------~----~~~~l~~~~~--~~~V~f~G~v~~~ 323 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAF-VGDG-----------P----YREELEKMFA--GTPTVFTGMLQGD 323 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEE-EeCC-----------h----HHHHHHHHhc--cCCeEEeccCCHH
Confidence 4556668775 344466677888775 445444 4433 1 2223333333 4578888999754
Q ss_pred H---HhcccCceeeccccc----hhhHHHHHHcCCceeecccccccchhHHHHHhh---hcceEEeccccccCCCCCCCC
Q 048562 333 L---ILEHTAVGGFMTHCG----WNSTLESVSAGVPMVTWPITAEQFSNEKLISDV---LKIGVKVGSVNWVSWSTEPSA 402 (464)
Q Consensus 333 ~---lL~~~~~~~~ItHGG----~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~---~G~G~~l~~~~~~~~~~~~~~ 402 (464)
+ ++..+++ ||.-.. ..++.||+++|+|+|+.... .....+ +. -+.|..++..
T Consensus 324 ev~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv~~~----------- 385 (465)
T PLN02871 324 ELSQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLYTPG----------- 385 (465)
T ss_pred HHHHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEeCCC-----------
Confidence 4 6667777 664332 45799999999999987542 233444 45 5778888653
Q ss_pred ccChHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048562 403 AVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGE 435 (464)
Q Consensus 403 ~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~ 435 (464)
+.+++.++|.++++|++..+.+.+++++..+
T Consensus 386 --d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 416 (465)
T PLN02871 386 --DVDDCVEKLETLLADPELRERMGAAAREEVE 416 (465)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 7899999999999988666666666665443
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.25 E-value=2.4e-08 Score=98.43 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=67.6
Q ss_pred CCcEEecCcccHHH---HhcccCceeec--c--ccc-hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccc
Q 048562 320 KRGLIIRGWAPQLL---ILEHTAVGGFM--T--HCG-WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSV 391 (464)
Q Consensus 320 ~~nv~v~~~vpq~~---lL~~~~~~~~I--t--HGG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 391 (464)
..++.+.+|+++.+ ++..+++ +| + ..| ..++.||+++|+|+|+.+. ..+...+ +..+.|..++..
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~~~~ 314 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLFPPG 314 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEECCC
Confidence 57899999997554 5777887 55 2 233 4589999999999998654 3456667 466678888653
Q ss_pred cccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048562 392 NWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGE 432 (464)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~ 432 (464)
+.+++.+++.++++|++..+.+.+++++
T Consensus 315 -------------d~~~l~~~i~~l~~~~~~~~~~~~~~~~ 342 (359)
T cd03823 315 -------------DAEDLAAALERLIDDPDLLERLRAGIEP 342 (359)
T ss_pred -------------CHHHHHHHHHHHHhChHHHHHHHHhHHH
Confidence 6899999999999988555555554433
No 47
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.25 E-value=2.3e-08 Score=99.89 Aligned_cols=331 Identities=13% Similarity=0.073 Sum_probs=168.2
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 8 VEMFFFPYV-GGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 8 ~~vl~~~~~-~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
|||+++++| ..|.-.-...+++.|.++||+|++++.......... ..++.+..++.+ .+. . ....
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~--~---~~~~ 66 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSRPFRLDEY--------SPNIFFHEVEVP-QYP--L---FQYP 66 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCCCcchhhh--------ccCeEEEEeccc-ccc--h---hhcc
Confidence 467777765 677777899999999999999999987532211111 113444333211 000 0 0000
Q ss_pred HHHHhhhHHHHHHhhhhCCCCEEEeCCCch--hhHHHHHH-c---CCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCC
Q 048562 87 RTDTSMLQEPLKSLLVDSRPDCIVHDMFHH--WSADVINS-M---NIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYE 160 (464)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~--~~~~~A~~-~---giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (464)
. ........+.+++++.+||+|.+-.... ....++.. . ++|++..........
T Consensus 67 ~-~~~~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-------------------- 125 (371)
T cd04962 67 P-YDLALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITL-------------------- 125 (371)
T ss_pred h-hHHHHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCcccc--------------------
Confidence 0 0112346777888889999998754322 12223322 2 799887532210000
Q ss_pred ceecCCCCCccccChhhhhhhccccEEEEcCccccChHHHHHHHhhh-CCCCeEEeCcccccccCcchhhhcCCCCCCCc
Q 048562 161 PFVVPGLPDKIELTALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDL-GNDKAWFVGPVSLCNRNIEDKAERGQKTSIDE 239 (464)
Q Consensus 161 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~ 239 (464)
. +... .+.+.........+.+++.+- ...+...... ...++..++......... ....
T Consensus 126 ---~-~~~~--~~~~~~~~~~~~~d~ii~~s~-----~~~~~~~~~~~~~~~i~vi~n~~~~~~~~----------~~~~ 184 (371)
T cd04962 126 ---V-GQDP--SFQPATRFSIEKSDGVTAVSE-----SLRQETYELFDITKEIEVIPNFVDEDRFR----------PKPD 184 (371)
T ss_pred ---c-cccc--cchHHHHHHHhhCCEEEEcCH-----HHHHHHHHhcCCcCCEEEecCCcCHhhcC----------CCch
Confidence 0 0000 000000122334555554332 1112222221 023455554321110000 0001
Q ss_pred cccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhh----CCCceEEEEccCCCCCCCCcCCcccccCCchhHHHh
Q 048562 240 GKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEA----SNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEER 315 (464)
Q Consensus 240 ~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~ 315 (464)
....+..... ++..+++.+|.... ...+..+++++.. .+.++++.-.+. . .+.+.+.
T Consensus 185 ~~~~~~~~~~-~~~~~il~~g~l~~--~K~~~~li~a~~~l~~~~~~~l~i~G~g~-----------~-----~~~~~~~ 245 (371)
T cd04962 185 EALKRRLGAP-EGEKVLIHISNFRP--VKRIDDVIRIFAKVRKEVPARLLLVGDGP-----------E-----RSPAERL 245 (371)
T ss_pred HHHHHhcCCC-CCCeEEEEeccccc--ccCHHHHHHHHHHHHhcCCceEEEEcCCc-----------C-----HHHHHHH
Confidence 1111111211 23356667777763 3334444444432 355655553322 1 1112111
Q ss_pred hc--CCCCcEEecCcccH-HHHhcccCceeecc----ccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEe
Q 048562 316 MG--ESKRGLIIRGWAPQ-LLILEHTAVGGFMT----HCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKV 388 (464)
Q Consensus 316 ~~--~~~~nv~v~~~vpq-~~lL~~~~~~~~It----HGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l 388 (464)
.. ...+++...++.++ .+++..+++ +|. -|...++.||+++|+|+|+... ......+ ++-..|..+
T Consensus 246 ~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i-~~~~~G~~~ 318 (371)
T cd04962 246 ARELGLQDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVV-KHGETGFLV 318 (371)
T ss_pred HHHcCCCceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhh-cCCCceEEc
Confidence 11 11456888887763 567877777 442 2345699999999999998643 3455566 355678777
Q ss_pred ccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048562 389 GSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGEL 433 (464)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 433 (464)
+. -+.+++.++|.++++|++..+.+++++++.
T Consensus 319 ~~-------------~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 319 DV-------------GDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred CC-------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 54 378999999999999876556667776665
No 48
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.25 E-value=6.2e-12 Score=107.81 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=78.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCC--CCCCCcccHH
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEI--PDTDMSATPR 87 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~ 87 (464)
|+|.+.|+.||++|++.||++|++|||+|++++++.+.+.+... ++.+..++.+..+.. ........+.
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~---------Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA---------GLEFVPIPGDSRLPRSLEPLANLRRLA 71 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT---------T-EEEESSSCGGGGHHHHHHHHHHCHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc---------CceEEEecCCcCcCcccchhhhhhhHH
Confidence 78999999999999999999999999999999999999988765 788888763201110 0000000111
Q ss_pred HH---HhhhHHHHHHhhh--------hCCCCEEEeCCCchhhHHHHHHcCCCeEEEeccchH
Q 048562 88 TD---TSMLQEPLKSLLV--------DSRPDCIVHDMFHHWSADVINSMNIPRIVFNGNCCF 138 (464)
Q Consensus 88 ~~---~~~~~~~l~~~l~--------~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~~~~ 138 (464)
.. .....+.+.+... ....|+++++.....+..+|+++|||++.....+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 72 RLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 11 1111111111111 136888888877778899999999999998766543
No 49
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.24 E-value=1.4e-08 Score=100.56 Aligned_cols=97 Identities=21% Similarity=0.218 Sum_probs=70.2
Q ss_pred CCcEEecCcccHHH---HhcccCceeeccc----cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecccc
Q 048562 320 KRGLIIRGWAPQLL---ILEHTAVGGFMTH----CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVN 392 (464)
Q Consensus 320 ~~nv~v~~~vpq~~---lL~~~~~~~~ItH----GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 392 (464)
..++...+++|+.+ ++..+++ +|.. |...++.||+++|+|+|+... ...+..+ +..+.|..++..
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~~- 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPPG- 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCCC-
Confidence 56899999998655 5777877 5532 345789999999999998653 3455666 466788888653
Q ss_pred ccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 048562 393 WVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKA 437 (464)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~ 437 (464)
+. ++.+++.++++|++..+.+.+++++..+..
T Consensus 330 ------------~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 361 (374)
T cd03817 330 ------------DE-ALAEALLRLLQDPELRRRLSKNAEESAEKF 361 (374)
T ss_pred ------------CH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 22 899999999999865555666666655543
No 50
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=4.3e-09 Score=96.75 Aligned_cols=294 Identities=15% Similarity=0.202 Sum_probs=180.7
Q ss_pred cEEEEEcCC----CccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCc
Q 048562 8 VEMFFFPYV----GGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMS 83 (464)
Q Consensus 8 ~~vl~~~~~----~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (464)
|||+|.+-+ |.||+.+++.||++|.++|..++|++.+...+.+.+... .+.+...-
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~~-------~f~~~~~~------------- 60 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVYE-------GFKVLEGR------------- 60 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhhh-------hccceeee-------------
Confidence 568887743 889999999999999999999999999876654444211 12211110
Q ss_pred ccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch---hhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCC
Q 048562 84 ATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH---WSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYE 160 (464)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~---~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (464)
. ...+++.++|++|.|.+.. -.-.+...++.+.+.+-.-...+.
T Consensus 61 -----~--------~n~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~-------------------- 107 (318)
T COG3980 61 -----G--------NNLIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSF-------------------- 107 (318)
T ss_pred -----c--------ccccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccch--------------------
Confidence 0 0178889999999998876 244466678999999832211110
Q ss_pred ceecCCCCCccccChhhhhhhccccEEEEcCccccChHHHHHHHhhhCCCCeEEeCccccccc-CcchhhhcCCCCCCCc
Q 048562 161 PFVVPGLPDKIELTALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNR-NIEDKAERGQKTSIDE 239 (464)
Q Consensus 161 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp~~~~~~-~~~~~~~~~~~~~~~~ 239 (464)
... ...+|.... ...+ ....+.+--++.||-..+-+ .... +.
T Consensus 108 -------~d~---------------d~ivN~~~~-a~~~----y~~v~~k~~~~lGp~y~~lr~eF~~----------~r 150 (318)
T COG3980 108 -------KDN---------------DLIVNAILN-ANDY----YGLVPNKTRYYLGPGYAPLRPEFYA----------LR 150 (318)
T ss_pred -------hhh---------------Hhhhhhhhc-chhh----ccccCcceEEEecCCceeccHHHHH----------hH
Confidence 000 000000000 0000 00111233356666433211 0000 11
Q ss_pred cccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCC
Q 048562 240 GKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGES 319 (464)
Q Consensus 240 ~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 319 (464)
++. +.. +..-|+|++|-.- +....-.++..+.+.+..+-.+++.. +| + + .++..+..+
T Consensus 151 ~~~---~~r--~~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~--~p-------~----l-~~l~k~~~~- 208 (318)
T COG3980 151 EEN---TER--PKRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS--NP-------T----L-KNLRKRAEK- 208 (318)
T ss_pred HHH---hhc--chheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC--Cc-------c----h-hHHHHHHhh-
Confidence 111 111 2336888888764 33456667788888777777777743 11 1 2 122222221
Q ss_pred CCcEEecCccc-HHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCC
Q 048562 320 KRGLIIRGWAP-QLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWST 398 (464)
Q Consensus 320 ~~nv~v~~~vp-q~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~ 398 (464)
.+|+....... ...++..+++ .|+-||. |++|++.-|+|.+++|+...|--.|... +.+|+-..++.
T Consensus 209 ~~~i~~~~~~~dma~LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~-------- 276 (318)
T COG3980 209 YPNINLYIDTNDMAELMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGY-------- 276 (318)
T ss_pred CCCeeeEecchhHHHHHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccC--------
Confidence 55666655553 5668888887 8888775 8999999999999999999999999999 69999888865
Q ss_pred CCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048562 399 EPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGEL 433 (464)
Q Consensus 399 ~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 433 (464)
.+++......+.++..|. ..|.+...-
T Consensus 277 ----~l~~~~~~~~~~~i~~d~----~~rk~l~~~ 303 (318)
T COG3980 277 ----HLKDLAKDYEILQIQKDY----ARRKNLSFG 303 (318)
T ss_pred ----CCchHHHHHHHHHhhhCH----HHhhhhhhc
Confidence 477888888889999886 455444433
No 51
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.17 E-value=2.6e-08 Score=100.37 Aligned_cols=341 Identities=12% Similarity=0.094 Sum_probs=169.9
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHH
Q 048562 17 GGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEP 96 (464)
Q Consensus 17 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (464)
..|+-..+..|+++|+++||+|++++............ ...++.++.++......... . .+..........
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~ 90 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVE-----LAPGVRVVRVPAGPAEYLPK-E---ELWPYLDEFADD 90 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCcccCCccc-----cccceEEEecccccccCCCh-h---hcchhHHHHHHH
Confidence 46788899999999999999999998653322111000 01245555554211100100 0 011111123344
Q ss_pred HHHhhhhC--CCCEEEeCCCch--hhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCceecCCCC-Ccc
Q 048562 97 LKSLLVDS--RPDCIVHDMFHH--WSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVVPGLP-DKI 171 (464)
Q Consensus 97 l~~~l~~~--~pD~Vi~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~ 171 (464)
+.+.++.. +||+|++..... .+..+++.+|+|+|......... .......... ...
T Consensus 91 ~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-------------------~~~~~~~~~~~~~~ 151 (398)
T cd03800 91 LLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAV-------------------KRRHLGAADTYEPA 151 (398)
T ss_pred HHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEEeeccccc-------------------CCcccccccccchh
Confidence 55556665 999999986443 45667888999988653221000 0000000000 000
Q ss_pred ccChhhhhhhccccEEEEcCccccChHHHHHHHhhhC--CCCeEEeCcccccccCcchhhhcCCCCCCCccc-cccccCc
Q 048562 172 ELTALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLG--NDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGK-ILSFLDS 248 (464)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~ 248 (464)
.............+.+++.+-.. ......... ..++..+.+...... . . +...... ...+...
T Consensus 152 ~~~~~~~~~~~~ad~ii~~s~~~-----~~~~~~~~~~~~~~~~vi~ng~~~~~-~-~-------~~~~~~~~~~~~~~~ 217 (398)
T cd03800 152 RRIEAEERLLRAADRVIASTPQE-----AEELYSLYGAYPRRIRVVPPGVDLER-F-T-------PYGRAEARRARLLRD 217 (398)
T ss_pred hhhhHHHHHHhhCCEEEEcCHHH-----HHHHHHHccccccccEEECCCCCccc-e-e-------cccchhhHHHhhccC
Confidence 00000012234455555544221 111111110 122444433221100 0 0 0000000 1112111
Q ss_pred CCCCcEEEEecCCCCCCCHHhHHHHHHHHhhC-----CCceEEEEccCCCCCCCCcCCcccccCCchh---HHHhhcCCC
Q 048562 249 KETNSVLYISFGSLARLSPEQLLEIAYGLEAS-----NHSFIWVVGKIFQSPGTRKENGIEENWLPSG---FEERMGESK 320 (464)
Q Consensus 249 ~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~---~~~~~~~~~ 320 (464)
++..+++..|+... ......+++++..+ +.++++.-+.. .......... +.+.. ...
T Consensus 218 --~~~~~i~~~gr~~~--~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~----------~~~~~~~~~~~~~~~~~~-~~~ 282 (398)
T cd03800 218 --PDKPRILAVGRLDP--RKGIDTLIRAYAELPELRERANLVIVGGPR----------DDILAMDEEELRELAREL-GVI 282 (398)
T ss_pred --CCCcEEEEEccccc--ccCHHHHHHHHHHHHHhCCCeEEEEEECCC----------CcchhhhhHHHHHHHHhc-CCC
Confidence 22356677788763 22344445555442 45555554433 0100000000 11111 114
Q ss_pred CcEEecCcccHHH---HhcccCceeeccc----cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccc
Q 048562 321 RGLIIRGWAPQLL---ILEHTAVGGFMTH----CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNW 393 (464)
Q Consensus 321 ~nv~v~~~vpq~~---lL~~~~~~~~ItH----GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 393 (464)
.|+...+|+|+.+ ++..+++ ++.. |-..++.||+++|+|+|+.... .....+ +..+.|..++.
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i-~~~~~g~~~~~--- 352 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV-VDGVTGLLVDP--- 352 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-cCCCCeEEeCC---
Confidence 6899999999765 4777777 6643 2246899999999999987543 355567 57778988865
Q ss_pred cCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 048562 394 VSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELG 434 (464)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 434 (464)
-+.+++.++|.++++|++..+.+.+++++..
T Consensus 353 ----------~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 383 (398)
T cd03800 353 ----------RDPEALAAALRRLLTDPALRRRLSRAGLRRA 383 (398)
T ss_pred ----------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3789999999999998755555666655543
No 52
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.12 E-value=7.9e-08 Score=94.35 Aligned_cols=329 Identities=16% Similarity=0.113 Sum_probs=167.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhh-hhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALS-FQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
||++++....|+...+..++++|.++||+|++++....... ... .++....++.... .. ...
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-------~~-~~~ 63 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEA---------LGVKVIPIPLDRR-------GI-NPF 63 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccccccc---------CCceEEecccccc-------cc-ChH
Confidence 57788777889999999999999999999999998755432 111 2455555542110 00 011
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCCCch--hhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCceecC
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDMFHH--WSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVVP 165 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 165 (464)
... .....+.+.+++.+||+|++..... .+..+++..+.|.+........... . ..
T Consensus 64 ~~~-~~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------~---~~ 121 (359)
T cd03808 64 KDL-KALLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------------T---SG 121 (359)
T ss_pred hHH-HHHHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh------------------c---cc
Confidence 111 1234566778889999999986544 2333444356665554322111100 0 00
Q ss_pred CCCCccccChhhhhhhccccEEEEcCccccChHHHHHHHhhhCC--CCeEEeCcccccccCcchhhhcCCCCCCCccccc
Q 048562 166 GLPDKIELTALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGN--DKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKIL 243 (464)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~ 243 (464)
.. ....+....-......+.+++.+- ...+........ .....+.|....... .
T Consensus 122 ~~-~~~~~~~~~~~~~~~~d~ii~~s~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~ 177 (359)
T cd03808 122 GL-KRRLYLLLERLALRFTDKVIFQNE-----DDRDLALKLGIIKKKKTVLIPGSGVDLDR------------------F 177 (359)
T ss_pred hh-HHHHHHHHHHHHHhhccEEEEcCH-----HHHHHHHHhcCCCcCceEEecCCCCChhh------------------c
Confidence 00 000000000011233345454331 111222221101 122222221111000 0
Q ss_pred cccCc-CCCCcEEEEecCCCCCC-CHHhHHHHHHHHhh--CCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCC
Q 048562 244 SFLDS-KETNSVLYISFGSLARL-SPEQLLEIAYGLEA--SNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGES 319 (464)
Q Consensus 244 ~~l~~-~~~~~~V~vs~GS~~~~-~~~~~~~~~~al~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 319 (464)
..... ..+++.+++..|+.... ..+.+.+.+..+.+ .+.++++. |.. . .. .. .......+. ..
T Consensus 178 ~~~~~~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~-G~~------~---~~-~~-~~~~~~~~~-~~ 244 (359)
T cd03808 178 SPSPEPIPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLV-GDG------D---EE-NP-AAILEIEKL-GL 244 (359)
T ss_pred CccccccCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEE-cCC------C---cc-hh-hHHHHHHhc-CC
Confidence 00000 12345778888887642 22333333333332 23344433 332 0 00 00 100001111 11
Q ss_pred CCcEEecCccc-HHHHhcccCceeecccc----chhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecccccc
Q 048562 320 KRGLIIRGWAP-QLLILEHTAVGGFMTHC----GWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWV 394 (464)
Q Consensus 320 ~~nv~v~~~vp-q~~lL~~~~~~~~ItHG----G~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 394 (464)
..++...++.. ...++..+++ +|... -.+++.||+.+|+|+|+.+.. .....+ +..+.|..++.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i-~~~~~g~~~~~---- 313 (359)
T cd03808 245 EGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAV-IDGVNGFLVPP---- 313 (359)
T ss_pred cceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhh-hcCcceEEECC----
Confidence 45777777653 4667888887 55433 257999999999999986543 345566 46678888755
Q ss_pred CCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048562 395 SWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGEL 433 (464)
Q Consensus 395 ~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 433 (464)
-+.+++.++|.+++.|++..+.+.+++++.
T Consensus 314 ---------~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 343 (359)
T cd03808 314 ---------GDAEALADAIERLIEDPELRARMGQAARKR 343 (359)
T ss_pred ---------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 378999999999999986555555555554
No 53
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.12 E-value=4e-08 Score=97.65 Aligned_cols=96 Identities=20% Similarity=0.214 Sum_probs=68.6
Q ss_pred CCcEEecCcccHHH---HhcccCceeeccccc---------hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEE
Q 048562 320 KRGLIIRGWAPQLL---ILEHTAVGGFMTHCG---------WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVK 387 (464)
Q Consensus 320 ~~nv~v~~~vpq~~---lL~~~~~~~~ItHGG---------~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~ 387 (464)
.+|+...+++++.+ ++..+++ +|.... -+++.||+++|+|+|+.+..+.+ ..+ ...+.|..
T Consensus 274 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~----~~~-~~~~~g~~ 346 (394)
T cd03794 274 LDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESA----ELV-EEAGAGLV 346 (394)
T ss_pred CCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCch----hhh-ccCCcceE
Confidence 57899999998654 5667777 553222 23479999999999998765433 334 34467877
Q ss_pred eccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048562 388 VGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGE 435 (464)
Q Consensus 388 l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~ 435 (464)
++.. +.+++.++|.+++.|++..+.+.+++++..+
T Consensus 347 ~~~~-------------~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 347 VPPG-------------DPEALAAAILELLDDPEERAEMGENGRRYVE 381 (394)
T ss_pred eCCC-------------CHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 7553 7899999999999988666666666665554
No 54
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.11 E-value=3.4e-08 Score=100.65 Aligned_cols=92 Identities=13% Similarity=0.208 Sum_probs=64.9
Q ss_pred CcEEec-CcccHHH---HhcccCceeecc-c----c--chhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEec
Q 048562 321 RGLIIR-GWAPQLL---ILEHTAVGGFMT-H----C--GWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVG 389 (464)
Q Consensus 321 ~nv~v~-~~vpq~~---lL~~~~~~~~It-H----G--G~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 389 (464)
+|+... +|+|..+ +|..+++ ++. + | --+++.||+++|+|+|+... ......+ ++-+.|..+
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv- 365 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLVF- 365 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEE-
Confidence 455544 5887544 5777887 542 1 1 23579999999999998643 3455566 577789877
Q ss_pred cccccCCCCCCCCccChHHHHHHHHHHhcC---ChHHHHHHHHHHHHH
Q 048562 390 SVNWVSWSTEPSAAVGRDKVEVAVKRLMGT---GEEAAEMRRRAGELG 434 (464)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~ai~~il~~---~~~~~~~~~~a~~l~ 434 (464)
. +.++++++|.++++| ++..+.|.+++++.+
T Consensus 366 -~-------------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 366 -G-------------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred -C-------------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 2 678999999999998 666666777776655
No 55
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.07 E-value=1e-07 Score=93.04 Aligned_cols=98 Identities=19% Similarity=0.201 Sum_probs=67.8
Q ss_pred CCcEEecCccc-HHHHhcccCceeecccc----chhhHHHHHHcCCceeecccccccchhHHHHHhhhc-ceEEeccccc
Q 048562 320 KRGLIIRGWAP-QLLILEHTAVGGFMTHC----GWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLK-IGVKVGSVNW 393 (464)
Q Consensus 320 ~~nv~v~~~vp-q~~lL~~~~~~~~ItHG----G~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~ 393 (464)
..++...++.. -..++..+++ +|.-. ..+++.||+++|+|+|+.+..+. ...+. ..| .|..++.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~----~~~~~-~~~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTG----PSEII-EDGVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCc----hHhhh-ccCcceEEeCC---
Confidence 45677777633 4667877877 55443 25789999999999998654332 23342 444 7888754
Q ss_pred cCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 048562 394 VSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKA 437 (464)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~ 437 (464)
-+.+++.++|.++++|++..+.+.+++++..+.+
T Consensus 304 ----------~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 337 (348)
T cd03820 304 ----------GDVEALAEALLRLMEDEELRKRMGANARESAERF 337 (348)
T ss_pred ----------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 3789999999999999866666666665555443
No 56
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.06 E-value=4.2e-07 Score=90.02 Aligned_cols=148 Identities=17% Similarity=0.117 Sum_probs=94.5
Q ss_pred cEEEEecCCCCCCCHHhHHHHHHHHhhCC-CceEEEEccCCCCCCCCcCCcccccCCchhHHHhh--cCCCCcEEecCcc
Q 048562 253 SVLYISFGSLARLSPEQLLEIAYGLEASN-HSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERM--GESKRGLIIRGWA 329 (464)
Q Consensus 253 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~nv~v~~~v 329 (464)
..+++..|+.. .......+++++.++. .++++.-.+. ....+.+.. .....||...+|+
T Consensus 191 ~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~----------------~~~~~~~~~~~~~~~~~V~~~g~v 252 (357)
T cd03795 191 RPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP----------------LEAELEALAAALGLLDRVRFLGRL 252 (357)
T ss_pred CcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh----------------hHHHHHHHHHhcCCcceEEEcCCC
Confidence 35667778765 3344666777777766 4444433221 111222211 1125689999999
Q ss_pred cHHH---HhcccCceeecc---ccc-hhhHHHHHHcCCceeecccccccchhHHHHHhh-hcceEEeccccccCCCCCCC
Q 048562 330 PQLL---ILEHTAVGGFMT---HCG-WNSTLESVSAGVPMVTWPITAEQFSNEKLISDV-LKIGVKVGSVNWVSWSTEPS 401 (464)
Q Consensus 330 pq~~---lL~~~~~~~~It---HGG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~-~G~G~~l~~~~~~~~~~~~~ 401 (464)
|+.+ ++..+++-++.+ +.| ..++.||+++|+|+|+....+ ....+ +. .+.|..++.
T Consensus 253 ~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~----~~~~i-~~~~~~g~~~~~----------- 316 (357)
T cd03795 253 DDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGT----GGSYV-NLHGVTGLVVPP----------- 316 (357)
T ss_pred CHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCC----chhHH-hhCCCceEEeCC-----------
Confidence 9754 666677743333 234 357999999999999865433 33444 34 567877754
Q ss_pred CccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 048562 402 AAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEK 436 (464)
Q Consensus 402 ~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~ 436 (464)
-+.+++.++|.++++|++..+.+++++++..++
T Consensus 317 --~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 349 (357)
T cd03795 317 --GDPAALAEAIRRLLEDPELRERLGEAARERAEE 349 (357)
T ss_pred --CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
Confidence 388999999999999987666777777665544
No 57
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.05 E-value=2.6e-07 Score=90.71 Aligned_cols=322 Identities=19% Similarity=0.140 Sum_probs=167.4
Q ss_pred ccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHHH
Q 048562 18 GGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEPL 97 (464)
Q Consensus 18 ~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 97 (464)
.|+...+..+++.|.+.||+|++++............. ...... ... ................+
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~-------~~~~~~--------~~~-~~~~~~~~~~~~~~~~~ 77 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVG-------GIVVVR--------PPP-LLRVRRLLLLLLLALRL 77 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeec-------Ccceec--------CCc-ccccchhHHHHHHHHHH
Confidence 78999999999999999999999998754322111100 000000 000 00111111222234566
Q ss_pred HHhhhhCCCCEEEeCCCchhhH--HHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCceecCCCCCccccCh
Q 048562 98 KSLLVDSRPDCIVHDMFHHWSA--DVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVVPGLPDKIELTA 175 (464)
Q Consensus 98 ~~~l~~~~pD~Vi~D~~~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 175 (464)
...++..+||+|++........ ..+...++|++........... ... ..... .....
T Consensus 78 ~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~------------------~~~--~~~~~-~~~~~ 136 (374)
T cd03801 78 RRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP------------------GNE--LGLLL-KLARA 136 (374)
T ss_pred HHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc------------------ccc--hhHHH-HHHHH
Confidence 7778888999999998766333 4777889999877433211100 000 00000 00000
Q ss_pred hhhhhhccccEEEEcCccccChHHHHHHHhhhCC--CCeEEeCcccccccCcchhhhcCCCCCCCccccccccCcCCCCc
Q 048562 176 LSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGN--DKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSKETNS 253 (464)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 253 (464)
.........+.+++.+- ...+.+...... .++..+.+........ . .......-.. ...+.
T Consensus 137 ~~~~~~~~~d~~i~~s~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~----------~~~~~~~~~~-~~~~~ 199 (374)
T cd03801 137 LERRALRRADRIIAVSE-----ATREELRELGGVPPEKITVIPNGVDTERFR-P----------APRAARRRLG-IPEDE 199 (374)
T ss_pred HHHHHHHhCCEEEEecH-----HHHHHHHhcCCCCCCcEEEecCcccccccC-c----------cchHHHhhcC-CcCCC
Confidence 00122344455554332 222223333211 2455554322110000 0 0000001111 12234
Q ss_pred EEEEecCCCCCCCHHhHHHHHHHHhhC-----CCceEEEEccCCCCCCCCcCCcccccCCchhHHHhh--cCCCCcEEec
Q 048562 254 VLYISFGSLARLSPEQLLEIAYGLEAS-----NHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERM--GESKRGLIIR 326 (464)
Q Consensus 254 ~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~nv~v~ 326 (464)
.+++.+|+... ...+..+++++... +.++++ +|.. . ....+.... .....++.+.
T Consensus 200 ~~i~~~g~~~~--~k~~~~~i~~~~~~~~~~~~~~l~i-~G~~-----------~----~~~~~~~~~~~~~~~~~v~~~ 261 (374)
T cd03801 200 PVILFVGRLVP--RKGVDLLLEALAKLRKEYPDVRLVI-VGDG-----------P----LREELEALAAELGLGDRVTFL 261 (374)
T ss_pred eEEEEecchhh--hcCHHHHHHHHHHHhhhcCCeEEEE-EeCc-----------H----HHHHHHHHHHHhCCCcceEEE
Confidence 66777787762 33344455555442 233333 3332 1 111111110 0126789999
Q ss_pred CcccHH---HHhcccCceeecc----ccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCC
Q 048562 327 GWAPQL---LILEHTAVGGFMT----HCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTE 399 (464)
Q Consensus 327 ~~vpq~---~lL~~~~~~~~It----HGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 399 (464)
+++++. .++..+++ +|. -|..+++.||+++|+|+|+.+. ......+ +..+.|..++.
T Consensus 262 g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~~~--------- 325 (374)
T cd03801 262 GFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLVPP--------- 325 (374)
T ss_pred eccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEeCC---------
Confidence 999744 46777777 552 3556799999999999998765 4456667 46778888865
Q ss_pred CCCccChHHHHHHHHHHhcCChHHHHHHHHHH
Q 048562 400 PSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAG 431 (464)
Q Consensus 400 ~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~ 431 (464)
.+.+++.++|.+++.|++..+.+.++++
T Consensus 326 ----~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 353 (374)
T cd03801 326 ----GDPEALAEAILRLLDDPELRRRLGEAAR 353 (374)
T ss_pred ----CCHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 3689999999999998854445555554
No 58
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.04 E-value=8.6e-07 Score=87.34 Aligned_cols=317 Identities=16% Similarity=0.095 Sum_probs=161.1
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHH
Q 048562 17 GGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEP 96 (464)
Q Consensus 17 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (464)
..|+...+..+++.|.+.||+|++++............. ........ ....... ................
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 82 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLK-------GRLVGVER--LPVLLPV-VPLLKGPLLYLLAARA 82 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcc-------cccccccc--cccCcch-hhccccchhHHHHHHH
Confidence 488888999999999999999999998654332222100 00000000 0000000 0000111112234556
Q ss_pred HHHhhh--hCCCCEEEeCCCch---hhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCceecCCCCCcc
Q 048562 97 LKSLLV--DSRPDCIVHDMFHH---WSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVVPGLPDKI 171 (464)
Q Consensus 97 l~~~l~--~~~pD~Vi~D~~~~---~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 171 (464)
+...++ ..++|+|++..... ....+++..++|++.......... .....
T Consensus 83 ~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-----------------------~~~~~--- 136 (377)
T cd03798 83 LLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNL-----------------------LPRKR--- 136 (377)
T ss_pred HHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcc-----------------------cCchh---
Confidence 777777 89999999986543 345566777889887643311100 00000
Q ss_pred ccChhh-hhhhccccEEEEcCccccChHHHHHHHhh-hCCCCeEEeCcccccccCcchhhhcCCCCCCCccccccccCcC
Q 048562 172 ELTALS-FRFEEKSFGIVVNSFYDLEPAYVEYFKQD-LGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKILSFLDSK 249 (464)
Q Consensus 172 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 249 (464)
..... .......+.+++.+ +...+..... ....++..+++........ . . ..... ..+..
T Consensus 137 -~~~~~~~~~~~~~d~ii~~s-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~--------~-~~~~~-~~~~~- 198 (377)
T cd03798 137 -LLRALLRRALRRADAVIAVS-----EALADELKALGIDPEKVTVIPNGVDTERFS-P--------A-DRAEA-RKLGL- 198 (377)
T ss_pred -hHHHHHHHHHhcCCeEEeCC-----HHHHHHHHHhcCCCCceEEcCCCcCcccCC-C--------c-chHHH-HhccC-
Confidence 00110 12234455555433 2222222222 1134555555322111000 0 0 00000 01111
Q ss_pred CCCcEEEEecCCCCCCCHHhHHHHHHHHhh---CCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhh--cCCCCcEE
Q 048562 250 ETNSVLYISFGSLARLSPEQLLEIAYGLEA---SNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERM--GESKRGLI 324 (464)
Q Consensus 250 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~nv~ 324 (464)
..+..+++..|+... .+.+..+++++.. .+..+.+.+.+. .. ....+.+.. .....|+.
T Consensus 199 ~~~~~~i~~~g~~~~--~k~~~~li~~~~~~~~~~~~~~l~i~g~----------~~----~~~~~~~~~~~~~~~~~v~ 262 (377)
T cd03798 199 PEDKKVILFVGRLVP--RKGIDYLIEALARLLKKRPDVHLVIVGD----------GP----LREALEALAAELGLEDRVT 262 (377)
T ss_pred CCCceEEEEeccCcc--ccCHHHHHHHHHHHHhcCCCeEEEEEcC----------Cc----chHHHHHHHHhcCCcceEE
Confidence 123467777787764 2233444444443 222344443332 01 111111111 01256899
Q ss_pred ecCcccHH---HHhcccCceeec--cccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCC
Q 048562 325 IRGWAPQL---LILEHTAVGGFM--THCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTE 399 (464)
Q Consensus 325 v~~~vpq~---~lL~~~~~~~~I--tHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 399 (464)
+.+++++. .++..+++-++. +-|..+++.||+++|+|+|+.+. ......+ +..+.|..++.
T Consensus 263 ~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~-~~~~~g~~~~~--------- 328 (377)
T cd03798 263 FLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEII-TDGENGLLVPP--------- 328 (377)
T ss_pred EeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecC----CChHHHh-cCCcceeEECC---------
Confidence 99999864 456667772222 22456789999999999998654 3355566 47777887765
Q ss_pred CCCccChHHHHHHHHHHhcCCh
Q 048562 400 PSAAVGRDKVEVAVKRLMGTGE 421 (464)
Q Consensus 400 ~~~~~~~~~l~~ai~~il~~~~ 421 (464)
-+.+++.++|.+++++.+
T Consensus 329 ----~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 329 ----GDPEALAEAILRLLADPW 346 (377)
T ss_pred ----CCHHHHHHHHHHHhcCcH
Confidence 488999999999999874
No 59
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.02 E-value=7.3e-08 Score=96.56 Aligned_cols=319 Identities=15% Similarity=0.148 Sum_probs=165.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEeCCcchhhhhhhhhhccCCCCCeEE-EEecCCCCCCCCCCCCcccH
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAH-GAKSTIITSPKHALSFQKSINRNQQSGLPITI-KTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 86 (464)
||+++. +++.|+.-+.++.++|.++ +.++.++.+....+........ .++.. +.+. ... .-...
T Consensus 2 ~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~-----~~i~~~~~~~------~~~--~~~~~ 67 (365)
T TIGR00236 2 KVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDL-----FHLPPDYDLN------IMS--PGQTL 67 (365)
T ss_pred eEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHh-----cCCCCCeeee------cCC--CCCCH
Confidence 676654 4999999999999999987 5555555444333333222110 12211 1111 111 12233
Q ss_pred HHHHhhhHHHHHHhhhhCCCCEEEeCC--Cc-hhhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCcee
Q 048562 87 RTDTSMLQEPLKSLLVDSRPDCIVHDM--FH-HWSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFV 163 (464)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~pD~Vi~D~--~~-~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (464)
..........+.+++++.+||+|++-. .. .+++.+|..+|||++-+...- .+ ....
T Consensus 68 ~~~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~-~s--------------------~~~~ 126 (365)
T TIGR00236 68 GEITSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL-RT--------------------GDRY 126 (365)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC-Cc--------------------CCCC
Confidence 445555668888999999999999964 22 257888999999987653210 00 0000
Q ss_pred cCCCCCccccChhhhhhhc-cccEEEEcCccccChHHHHHH-HhhhCCCCeEEeCcccccccCcchhhhcCCCCCCCccc
Q 048562 164 VPGLPDKIELTALSFRFEE-KSFGIVVNSFYDLEPAYVEYF-KQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGK 241 (464)
Q Consensus 164 ~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~ 241 (464)
..+++.. .+. ... ..+.+++.+ ...-+.+ ....++.+++.+|........... . ....++
T Consensus 127 -~~~~~~~--~r~---~~~~~ad~~~~~s-----~~~~~~l~~~G~~~~~I~vign~~~d~~~~~~--~-----~~~~~~ 188 (365)
T TIGR00236 127 -SPMPEEI--NRQ---LTGHIADLHFAPT-----EQAKDNLLRENVKADSIFVTGNTVIDALLTNV--E-----IAYSSP 188 (365)
T ss_pred -CCCccHH--HHH---HHHHHHHhccCCC-----HHHHHHHHHcCCCcccEEEeCChHHHHHHHHH--h-----hccchh
Confidence 0011110 000 011 112222211 1111122 112213467888843221100000 0 000112
Q ss_pred cccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhC-----CCceEEEEccCCCCCCCCcCCcccccCCchhHHHhh
Q 048562 242 ILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEAS-----NHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERM 316 (464)
Q Consensus 242 l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~ 316 (464)
+.+.+.. ++..|+++.+-.... .+.+..+++++.++ +.++++...++ .. .-..+.+..
T Consensus 189 ~~~~~~~--~~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~----------~~----~~~~~~~~~ 251 (365)
T TIGR00236 189 VLSEFGE--DKRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLN----------PV----VREPLHKHL 251 (365)
T ss_pred HHHhcCC--CCCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCC----------hH----HHHHHHHHh
Confidence 2222221 234666655432111 23466677777653 45566654432 11 111122211
Q ss_pred cCCCCcEEecCcccH---HHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccc
Q 048562 317 GESKRGLIIRGWAPQ---LLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNW 393 (464)
Q Consensus 317 ~~~~~nv~v~~~vpq---~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 393 (464)
. ..+++.+.+.+++ ..++.++++ +|+..|.. +.||+++|+|+|.++-.++++. +. ..|.|..+.
T Consensus 252 ~-~~~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~-~~g~~~lv~---- 318 (365)
T TIGR00236 252 G-DSKRVHLIEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TV-EAGTNKLVG---- 318 (365)
T ss_pred C-CCCCEEEECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HH-hcCceEEeC----
Confidence 1 1457888776654 456667776 88877654 7999999999999876555442 32 466666552
Q ss_pred cCCCCCCCCccChHHHHHHHHHHhcCC
Q 048562 394 VSWSTEPSAAVGRDKVEVAVKRLMGTG 420 (464)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~ai~~il~~~ 420 (464)
.++++|.+++.++++|+
T Consensus 319 ----------~d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 319 ----------TDKENITKAAKRLLTDP 335 (365)
T ss_pred ----------CCHHHHHHHHHHHHhCh
Confidence 37899999999999887
No 60
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.00 E-value=9.8e-07 Score=89.89 Aligned_cols=147 Identities=14% Similarity=0.105 Sum_probs=90.2
Q ss_pred cEEEEecCCCCCCCHHhHHHHHHHHhhC----CCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcC-CCCcEEecC
Q 048562 253 SVLYISFGSLARLSPEQLLEIAYGLEAS----NHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGE-SKRGLIIRG 327 (464)
Q Consensus 253 ~~V~vs~GS~~~~~~~~~~~~~~al~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~-~~~nv~v~~ 327 (464)
..+++..|++. ..+.+..+++|++.+ +.+++ .+|.. . ..+.+.+.... ...|+...+
T Consensus 229 ~~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~-ivG~g-----------~----~~~~l~~~~~~~~l~~v~f~G 290 (412)
T PRK10307 229 KKIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFV-ICGQG-----------G----GKARLEKMAQCRGLPNVHFLP 290 (412)
T ss_pred CEEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEE-EECCC-----------h----hHHHHHHHHHHcCCCceEEeC
Confidence 35666678886 333455566666543 23433 34433 1 11222221110 134799899
Q ss_pred cccHHH---HhcccCceeeccccch------hhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCC
Q 048562 328 WAPQLL---ILEHTAVGGFMTHCGW------NSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWST 398 (464)
Q Consensus 328 ~vpq~~---lL~~~~~~~~ItHGG~------~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~ 398 (464)
|+|+.+ ++..+++-++.+..+. +.+.|++.+|+|+|+....+. .....+ + +.|..++..
T Consensus 291 ~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~~------- 358 (412)
T PRK10307 291 LQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEPE------- 358 (412)
T ss_pred CCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCCC-------
Confidence 998654 6777887544444332 347899999999999864331 122333 3 788888654
Q ss_pred CCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048562 399 EPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGE 435 (464)
Q Consensus 399 ~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~ 435 (464)
+.++++++|.++++|++..+.+.+++++..+
T Consensus 359 ------d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~ 389 (412)
T PRK10307 359 ------SVEALVAAIAALARQALLRPKLGTVAREYAE 389 (412)
T ss_pred ------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 7899999999999987666677777776544
No 61
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.00 E-value=5.8e-07 Score=91.06 Aligned_cols=99 Identities=21% Similarity=0.179 Sum_probs=69.6
Q ss_pred CCcEEecCcccHHH---HhcccCceeeccc-cc-hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecccccc
Q 048562 320 KRGLIIRGWAPQLL---ILEHTAVGGFMTH-CG-WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWV 394 (464)
Q Consensus 320 ~~nv~v~~~vpq~~---lL~~~~~~~~ItH-GG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 394 (464)
.++|...+++|+.+ ++..+++-++.+. .| ..++.||+++|+|+|+.. .......+ +.-..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i-~~~~~G~lv~~---- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVI-TDGENGLLVDF---- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhc-ccCCceEEcCC----
Confidence 46899999998765 5566777333232 23 358999999999999864 34455566 35557887765
Q ss_pred CCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 048562 395 SWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEK 436 (464)
Q Consensus 395 ~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~ 436 (464)
-+++++.++|.++++|++..+.+.+++++..+.
T Consensus 351 ---------~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~ 383 (396)
T cd03818 351 ---------FDPDALAAAVIELLDDPARRARLRRAARRTALR 383 (396)
T ss_pred ---------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 379999999999999876555666666654443
No 62
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.00 E-value=8.7e-08 Score=98.06 Aligned_cols=88 Identities=16% Similarity=0.170 Sum_probs=64.4
Q ss_pred HHHhcccCceeecc----ccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccChH
Q 048562 332 LLILEHTAVGGFMT----HCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRD 407 (464)
Q Consensus 332 ~~lL~~~~~~~~It----HGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~ 407 (464)
..++..+++ +|+. -||..++.||+++|+|+|+.|...++......+ .+.|++... -+.+
T Consensus 314 ~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~---------------~d~~ 376 (425)
T PRK05749 314 GLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQV---------------EDAE 376 (425)
T ss_pred HHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEE---------------CCHH
Confidence 556777776 2331 134456999999999999999888888888877 477766653 2678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 048562 408 KVEVAVKRLMGTGEEAAEMRRRAGELGEK 436 (464)
Q Consensus 408 ~l~~ai~~il~~~~~~~~~~~~a~~l~~~ 436 (464)
+|.++|.++++|++..+.|.++++++.+.
T Consensus 377 ~La~~l~~ll~~~~~~~~m~~~a~~~~~~ 405 (425)
T PRK05749 377 DLAKAVTYLLTDPDARQAYGEAGVAFLKQ 405 (425)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 99999999999886555666666555433
No 63
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.96 E-value=4.4e-06 Score=82.75 Aligned_cols=322 Identities=11% Similarity=0.067 Sum_probs=163.2
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEeCCcchh-hhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHH
Q 048562 17 GGGHQIPMVDIARIFAAHGAKSTIITSPKHAL-SFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQE 95 (464)
Q Consensus 17 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (464)
..|--.-+..++++|.++||+|++++...... .+.. .++..+.++.. ..... .. .....
T Consensus 9 ~gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~---------~~~~~~~~~~~------~~~~~----~~-~~~~~ 68 (355)
T cd03819 9 SGGVERGTLELARALVERGHRSLVASAGGRLVAELEA---------EGSRHIKLPFI------SKNPL----RI-LLNVA 68 (355)
T ss_pred cCcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHh---------cCCeEEEcccc------ccchh----hh-HHHHH
Confidence 45666678999999999999999998754321 1221 14555554321 00001 11 11234
Q ss_pred HHHHhhhhCCCCEEEeCCCch--hhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCceecCCCCCcccc
Q 048562 96 PLKSLLVDSRPDCIVHDMFHH--WSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVVPGLPDKIEL 173 (464)
Q Consensus 96 ~l~~~l~~~~pD~Vi~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 173 (464)
.+.+.+++.+||+|++..... .+..+++.+++|++........... +
T Consensus 69 ~l~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~-------------------------------~ 117 (355)
T cd03819 69 RLRRLIREEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSVNF-------------------------------R 117 (355)
T ss_pred HHHHHHHHcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchhhHH-------------------------------H
Confidence 567778889999999976443 3444667789999876432111000 0
Q ss_pred ChhhhhhhccccEEEEcCccccChHHHHHHHhhh--CCCCeEEeCcccccccCcchhhhcCCCCCCCccc---cccccCc
Q 048562 174 TALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDL--GNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGK---ILSFLDS 248 (464)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~---l~~~l~~ 248 (464)
.. ..+...+.+++.+ ....+.....+ ...++..++.-....... . ......+ +.+-+..
T Consensus 118 -~~--~~~~~~~~vi~~s-----~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~-~-------~~~~~~~~~~~~~~~~~ 181 (355)
T cd03819 118 -YN--AIMARGDRVIAVS-----NFIADHIRENYGVDPDRIRVIPRGVDLDRFD-P-------GAVPPERILALAREWPL 181 (355)
T ss_pred -HH--HHHHhcCEEEEeC-----HHHHHHHHHhcCCChhhEEEecCCccccccC-c-------cccchHHHHHHHHHcCC
Confidence 00 1122334444322 11111222111 012344443211110000 0 0000000 0011111
Q ss_pred CCCCcEEEEecCCCCCC-CHHhHHHHHHHHhhC--CCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhc--CCCCcE
Q 048562 249 KETNSVLYISFGSLARL-SPEQLLEIAYGLEAS--NHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMG--ESKRGL 323 (464)
Q Consensus 249 ~~~~~~V~vs~GS~~~~-~~~~~~~~~~al~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~nv 323 (464)
.++..+++..|.+... ..+.+...+..+.+. +.+++++ |.. . .. .. +...+.+.+. +..++|
T Consensus 182 -~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~iv-G~~------~---~~-~~-~~~~~~~~~~~~~~~~~v 248 (355)
T cd03819 182 -PKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIV-GDA------Q---GR-RF-YYAELLELIKRLGLQDRV 248 (355)
T ss_pred -CCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEE-ECC------c---cc-ch-HHHHHHHHHHHcCCcceE
Confidence 2334667777876642 233444444444442 3343333 332 0 00 00 1111111111 114678
Q ss_pred EecCccc-HHHHhcccCceeecc--ccc-hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCC
Q 048562 324 IIRGWAP-QLLILEHTAVGGFMT--HCG-WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTE 399 (464)
Q Consensus 324 ~v~~~vp-q~~lL~~~~~~~~It--HGG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 399 (464)
...+|.+ ...++..+++-++-+ +-| .+++.||+++|+|+|+... ......+ +..+.|..++.
T Consensus 249 ~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i-~~~~~g~~~~~--------- 314 (355)
T cd03819 249 TFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETV-RPGETGLLVPP--------- 314 (355)
T ss_pred EEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHH-hCCCceEEeCC---------
Confidence 8888854 456788888833333 123 4699999999999998643 3345556 46567888865
Q ss_pred CCCccChHHHHHHHHHHh-cCChHHHHHHHHHHHHHHH
Q 048562 400 PSAAVGRDKVEVAVKRLM-GTGEEAAEMRRRAGELGEK 436 (464)
Q Consensus 400 ~~~~~~~~~l~~ai~~il-~~~~~~~~~~~~a~~l~~~ 436 (464)
-+.+++.++|..++ .|+++.+.+++++++..+.
T Consensus 315 ----~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 315 ----GDAEALAQALDQILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred ----CCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 38899999996555 4666556666666666554
No 64
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.94 E-value=1.2e-07 Score=94.78 Aligned_cols=322 Identities=15% Similarity=0.137 Sum_probs=164.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEeCCcch-hhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAH-GAKSTIITSPKHA-LSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
|+++ .+++..+.-+.+|.++|.++ |+++.++.+.... ........ ...+.....+............
T Consensus 2 i~~~-~gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~ 70 (363)
T cd03786 2 ILVV-TGTRPEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFF----------EILFIIKPDYDLLLGSDSQSLG 70 (363)
T ss_pred EEEE-EecCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHH----------HhhCCCCCCEEEecCCCCCCHH
Confidence 4444 45888888899999999998 9999976654332 22221111 0001100011100001111222
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCCCch---hhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCceec
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDMFHH---WSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVV 164 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~---~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (464)
.........+.+.+++.+||+|++-.... .+..+|+.+|+|++.+.... .++ ..
T Consensus 71 ~~~~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~~g~-~s~------------------~~---- 127 (363)
T cd03786 71 AQTAGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVEAGL-RSF------------------DR---- 127 (363)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEeccc-ccC------------------CC----
Confidence 22233456777788888999999975322 46678888999988653210 000 00
Q ss_pred CCCCCccccChhhhhhhccccEEEEcCccccChHHHHHH-HhhhCCCCeEEeCcccccccCcchhhhcCCCCCCCccc-c
Q 048562 165 PGLPDKIELTALSFRFEEKSFGIVVNSFYDLEPAYVEYF-KQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGK-I 242 (464)
Q Consensus 165 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~-l 242 (464)
+.+... .+ .......+.+++.+ +..-+.+ +....+.+++.+|.-..+... .... ...+. .
T Consensus 128 -~~~~~~---~r-~~~~~~ad~~~~~s-----~~~~~~l~~~G~~~~kI~vign~v~d~~~--~~~~------~~~~~~~ 189 (363)
T cd03786 128 -GMPDEE---NR-HAIDKLSDLHFAPT-----EEARRNLLQEGEPPERIFVVGNTMIDALL--RLLE------LAKKELI 189 (363)
T ss_pred -CCCchH---HH-HHHHHHhhhccCCC-----HHHHHHHHHcCCCcccEEEECchHHHHHH--HHHH------hhccchh
Confidence 000000 00 00011112222111 1111121 112223567788832211100 0000 00001 1
Q ss_pred ccccCcCCCCcEEEEecCCCCCC-CHHhHHHHHHHHhhCCC-ceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCC-
Q 048562 243 LSFLDSKETNSVLYISFGSLARL-SPEQLLEIAYGLEASNH-SFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGES- 319 (464)
Q Consensus 243 ~~~l~~~~~~~~V~vs~GS~~~~-~~~~~~~~~~al~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~- 319 (464)
.+.+.. ++++.|++++|..... ..+.+..+++++..+.. ++++..... .. ..+.+.+...+.
T Consensus 190 ~~~~~~-~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~----------~~----~~~~l~~~~~~~~ 254 (363)
T cd03786 190 LELLGL-LPKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNH----------PR----TRPRIREAGLEFL 254 (363)
T ss_pred hhhccc-CCCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECC----------CC----hHHHHHHHHHhhc
Confidence 111111 2355788888877643 35567788888877533 244444332 01 112222222111
Q ss_pred --CCcEEecCcccHH---HHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecccccc
Q 048562 320 --KRGLIIRGWAPQL---LILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWV 394 (464)
Q Consensus 320 --~~nv~v~~~vpq~---~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 394 (464)
.+++.+.++.+.. .++..+++ ||+..| |.+.|++++|+|+|+++.. |. +..+. +.|++..+.
T Consensus 255 ~~~~~v~~~~~~~~~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~-~~g~~~~~~----- 321 (363)
T cd03786 255 GHHPNVLLISPLGYLYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETV-ESGTNVLVG----- 321 (363)
T ss_pred cCCCCEEEECCcCHHHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhh-heeeEEecC-----
Confidence 3578777665543 45666776 999999 7788999999999998643 22 33453 667665552
Q ss_pred CCCCCCCCccChHHHHHHHHHHhcCC
Q 048562 395 SWSTEPSAAVGRDKVEVAVKRLMGTG 420 (464)
Q Consensus 395 ~~~~~~~~~~~~~~l~~ai~~il~~~ 420 (464)
-+.++|.++|.++++|+
T Consensus 322 ---------~~~~~i~~~i~~ll~~~ 338 (363)
T cd03786 322 ---------TDPEAILAAIEKLLSDE 338 (363)
T ss_pred ---------CCHHHHHHHHHHHhcCc
Confidence 25789999999999986
No 65
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.93 E-value=1.9e-06 Score=85.17 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=67.3
Q ss_pred CCcEEecCcccHHH---HhcccCceeeccc--------cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEe
Q 048562 320 KRGLIIRGWAPQLL---ILEHTAVGGFMTH--------CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKV 388 (464)
Q Consensus 320 ~~nv~v~~~vpq~~---lL~~~~~~~~ItH--------GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l 388 (464)
++|+...+++|+.+ ++..+++-++-+. |..+++.||+++|+|+|+.+... ....+ +....|..+
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~~~ 309 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGLLV 309 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceEEe
Confidence 57899999997544 5666777333222 33579999999999999875422 33345 355588888
Q ss_pred ccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048562 389 GSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGEL 433 (464)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 433 (464)
+. -+.+++.++|.++++|++..+.+.+++++.
T Consensus 310 ~~-------------~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~ 341 (355)
T cd03799 310 PP-------------GDPEALADAIERLLDDPELRREMGEAGRAR 341 (355)
T ss_pred CC-------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 54 388999999999999875555555555543
No 66
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.92 E-value=3.9e-07 Score=90.57 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=66.1
Q ss_pred CCcEEecCccc-HH---HHhcccCceeeccc----cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccc
Q 048562 320 KRGLIIRGWAP-QL---LILEHTAVGGFMTH----CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSV 391 (464)
Q Consensus 320 ~~nv~v~~~vp-q~---~lL~~~~~~~~ItH----GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 391 (464)
..++...+|++ +. .++..+++ +|.. |..+++.||+.+|+|+|+.... .....+ ...+.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~-~~~~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIV-DHGVTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhhe-eCCCceEEeCC-
Confidence 55788889998 43 46777777 6654 3357999999999999986532 333345 35456777654
Q ss_pred cccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 048562 392 NWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELG 434 (464)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 434 (464)
.+.+++.+++.++++|++..+.+.+++++..
T Consensus 315 ------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 345 (365)
T cd03825 315 ------------GDPEDLAEGIEWLLADPDEREELGEAARELA 345 (365)
T ss_pred ------------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 4788999999999998754445555555443
No 67
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.88 E-value=2.4e-06 Score=86.70 Aligned_cols=95 Identities=15% Similarity=0.073 Sum_probs=68.9
Q ss_pred CCcEEecCcccHH---HHhcccCceeecc---c-cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecccc
Q 048562 320 KRGLIIRGWAPQL---LILEHTAVGGFMT---H-CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVN 392 (464)
Q Consensus 320 ~~nv~v~~~vpq~---~lL~~~~~~~~It---H-GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 392 (464)
.+++...++++.. +++..+++ +|. + |...++.||+++|+|+|+.... .....+ +.-+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~~-- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAV-ADGETGLLVDG-- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhh-ccCCceEECCC--
Confidence 3579999999764 46778887 442 2 3346899999999999986543 344456 46667887754
Q ss_pred ccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 048562 393 WVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELG 434 (464)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 434 (464)
-+.+++.++|.++++|++..+.+.+++++..
T Consensus 353 -----------~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~ 383 (405)
T TIGR03449 353 -----------HDPADWADALARLLDDPRTRIRMGAAAVEHA 383 (405)
T ss_pred -----------CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3789999999999998755556666666544
No 68
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.87 E-value=1.2e-06 Score=85.51 Aligned_cols=321 Identities=14% Similarity=0.120 Sum_probs=159.9
Q ss_pred EEEEEcCC--CccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 9 EMFFFPYV--GGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 9 ~vl~~~~~--~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
||+++... ..|+...+..+++.|.+.||+|++++........... ......... .... ....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~-------~~~~~~~~~------~~~~-~~~~-- 64 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELL-------PSNVKLIPV------RVLK-LKSL-- 64 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCcccccc-------ccchhhhce------eeee-cccc--
Confidence 45555544 7888889999999999999999999886543322111 000000000 0000 0000
Q ss_pred HHHHhhhHHHHHHhhhhCCCCEEEeCCC-ch-hhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCceec
Q 048562 87 RTDTSMLQEPLKSLLVDSRPDCIVHDMF-HH-WSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVV 164 (464)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~pD~Vi~D~~-~~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (464)
........+.+++++.+||+|++... .. ....++...++|.+............
T Consensus 65 --~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------------------- 120 (353)
T cd03811 65 --RDLLAILRLRRLLRKEKPDVVISHLTTTPNVLALLAARLGTKLIVWEHNSLSLELK---------------------- 120 (353)
T ss_pred --cchhHHHHHHHHHHhcCCCEEEEcCccchhHHHHHHhhcCCceEEEEcCcchhhhc----------------------
Confidence 01112456777888889999999986 33 33334444478988864432211100
Q ss_pred CCCCCccccChhhhhhhccccEEEEcCccccChHHHHHHHhhhC--CCCeEEeCcccccccCcchhhhcCCCCCCCcccc
Q 048562 165 PGLPDKIELTALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLG--NDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKI 242 (464)
Q Consensus 165 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l 242 (464)
.... .. ..........+.+++.+-.. .+......+ ..++..+.+........ . ......
T Consensus 121 -~~~~-~~--~~~~~~~~~~d~ii~~s~~~-----~~~~~~~~~~~~~~~~vi~~~~~~~~~~-~---------~~~~~~ 181 (353)
T cd03811 121 -RKLR-LL--LLIRKLYRRADKIVAVSEGV-----KEDLLKLLGIPPDKIEVIYNPIDIEEIR-A---------LAEEPL 181 (353)
T ss_pred -cchh-HH--HHHHhhccccceEEEeccch-----hhhHHHhhcCCccccEEecCCcChhhcC-c---------ccchhh
Confidence 0000 00 01012234444444433211 111222220 13444444322111000 0 000000
Q ss_pred ccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhC-----CCceEEEEccCCCCCCCCcCCcccccCCchhH---HH
Q 048562 243 LSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEAS-----NHSFIWVVGKIFQSPGTRKENGIEENWLPSGF---EE 314 (464)
Q Consensus 243 ~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~---~~ 314 (464)
.+. ...+..+++..|+... ......+++++..+ +.++++. |.. . ....+ .+
T Consensus 182 -~~~--~~~~~~~i~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~-----------~----~~~~~~~~~~ 240 (353)
T cd03811 182 -ELG--IPPDGPVILAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVIL-GDG-----------P----LREELEALAK 240 (353)
T ss_pred -hcC--CCCCceEEEEEecchh--hcChHHHHHHHHHhhhcCCCceEEEE-cCC-----------c----cHHHHHHHHH
Confidence 011 1233477777888763 23344455555543 3344443 332 1 11111 11
Q ss_pred hhcCCCCcEEecCcccH-HHHhcccCceeeccc--cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccc
Q 048562 315 RMGESKRGLIIRGWAPQ-LLILEHTAVGGFMTH--CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSV 391 (464)
Q Consensus 315 ~~~~~~~nv~v~~~vpq-~~lL~~~~~~~~ItH--GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 391 (464)
+.. ...++...++.+. .+++..+++-++-++ |..+++.||+++|+|+|+.... .....+ +..+.|..++..
T Consensus 241 ~~~-~~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~~~ 314 (353)
T cd03811 241 ELG-LADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVPVG 314 (353)
T ss_pred hcC-CCccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEECCC
Confidence 111 1457888888753 567888887332222 3357899999999999986443 556667 577889888654
Q ss_pred cccCCCCCCCCccChHHH---HHHHHHHhcCChHHHHHHH
Q 048562 392 NWVSWSTEPSAAVGRDKV---EVAVKRLMGTGEEAAEMRR 428 (464)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l---~~ai~~il~~~~~~~~~~~ 428 (464)
+.+.+ .+++..++.+++..+.+++
T Consensus 315 -------------~~~~~~~~~~~i~~~~~~~~~~~~~~~ 341 (353)
T cd03811 315 -------------DEAALAAAALALLDLLLDPELRERLAA 341 (353)
T ss_pred -------------CHHHHHHHHHHHHhccCChHHHHHHHH
Confidence 66666 6666677776643333444
No 69
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.85 E-value=6.5e-06 Score=80.93 Aligned_cols=91 Identities=21% Similarity=0.232 Sum_probs=62.7
Q ss_pred CCcEEecCccc-HHHHhcccCceeeccccc----hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecccccc
Q 048562 320 KRGLIIRGWAP-QLLILEHTAVGGFMTHCG----WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWV 394 (464)
Q Consensus 320 ~~nv~v~~~vp-q~~lL~~~~~~~~ItHGG----~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 394 (464)
..++...+... ...++..+++ +|..+. .+++.||+++|+|+|+.. ...+...+ +. .|..++..
T Consensus 250 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~-~~--~g~~~~~~--- 317 (365)
T cd03807 250 EDKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELV-GD--TGFLVPPG--- 317 (365)
T ss_pred CceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHh-hc--CCEEeCCC---
Confidence 45666666543 4567888887 665433 479999999999999854 44555666 35 67777543
Q ss_pred CCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048562 395 SWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGE 432 (464)
Q Consensus 395 ~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~ 432 (464)
+.+++.++|.++++|++..+.+.+++++
T Consensus 318 ----------~~~~l~~~i~~l~~~~~~~~~~~~~~~~ 345 (365)
T cd03807 318 ----------DPEALAEAIEALLADPALRQALGEAARE 345 (365)
T ss_pred ----------CHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 6899999999999987544444444443
No 70
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.82 E-value=6.1e-06 Score=81.66 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=66.7
Q ss_pred CCcEEecC-cccHH---HHhcccCceeeccc----cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccc
Q 048562 320 KRGLIIRG-WAPQL---LILEHTAVGGFMTH----CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSV 391 (464)
Q Consensus 320 ~~nv~v~~-~vpq~---~lL~~~~~~~~ItH----GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 391 (464)
..++...+ |+|+. .++..+++-++-++ |..+++.||+++|+|+|+.+..+ ...+ ...+.|..++..
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~~~~ 319 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLVPPG 319 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEEcCC
Confidence 46777764 48754 46666777222222 33568999999999999977543 3345 366778877653
Q ss_pred cccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 048562 392 NWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEK 436 (464)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~ 436 (464)
+.+++.+++.++++|++..+.+.+++++..+.
T Consensus 320 -------------d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 351 (366)
T cd03822 320 -------------DPAALAEAIRRLLADPELAQALRARAREYARA 351 (366)
T ss_pred -------------CHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh
Confidence 68999999999999875555566665555444
No 71
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.82 E-value=4.8e-06 Score=82.25 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=66.8
Q ss_pred CCcEEecCcccHHH---HhcccCceeeccc--cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecccccc
Q 048562 320 KRGLIIRGWAPQLL---ILEHTAVGGFMTH--CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWV 394 (464)
Q Consensus 320 ~~nv~v~~~vpq~~---lL~~~~~~~~ItH--GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 394 (464)
.+++...+|+++.+ ++..+++-++-++ |-.+++.||+++|+|+|+.+. ......+ .. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~~~---- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVVDD---- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEeCC----
Confidence 57899999998544 5677777322232 224789999999999999653 3445556 35 78877743
Q ss_pred CCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048562 395 SWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGEL 433 (464)
Q Consensus 395 ~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 433 (464)
+.+++.++|.++++|++..+.+.+++++.
T Consensus 331 ----------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 ----------DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred ----------ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 44999999999999976555666666665
No 72
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.82 E-value=7.8e-06 Score=82.40 Aligned_cols=94 Identities=14% Similarity=0.080 Sum_probs=66.9
Q ss_pred CCcEEecCcccHH---HHhcccCceeeccc---cc-hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecccc
Q 048562 320 KRGLIIRGWAPQL---LILEHTAVGGFMTH---CG-WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVN 392 (464)
Q Consensus 320 ~~nv~v~~~vpq~---~lL~~~~~~~~ItH---GG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 392 (464)
.++|...+++|.. .++..+++ ++.. -| ..++.||+.+|+|+|+.-.. .....+ ...+.|..++
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i-~~~~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETV-VDGETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHh-ccCCceEEeC---
Confidence 4689999999865 46777777 5432 22 35789999999999997442 334456 3556677662
Q ss_pred ccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 048562 393 WVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELG 434 (464)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 434 (464)
.+.+++.++|.++++|++..+.+.+++++..
T Consensus 349 -----------~~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~ 379 (392)
T cd03805 349 -----------PTPEEFAEAMLKLANDPDLADRMGAAGRKRV 379 (392)
T ss_pred -----------CCHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 3789999999999999865666666666543
No 73
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.79 E-value=3e-06 Score=84.02 Aligned_cols=79 Identities=9% Similarity=0.097 Sum_probs=55.9
Q ss_pred CCcEEecCccc-HHHHhcccCceeeccc----cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecccccc
Q 048562 320 KRGLIIRGWAP-QLLILEHTAVGGFMTH----CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWV 394 (464)
Q Consensus 320 ~~nv~v~~~vp-q~~lL~~~~~~~~ItH----GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 394 (464)
..|+...++.. ..+++..+++ +|.- |..+++.||+.+|+|+|+. |...+...+ +. .|..+..
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~~~---- 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIVPI---- 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEeCC----
Confidence 45788888774 4678888887 4433 2257899999999999974 445555556 45 4555543
Q ss_pred CCCCCCCCccChHHHHHHHHHHhcCC
Q 048562 395 SWSTEPSAAVGRDKVEVAVKRLMGTG 420 (464)
Q Consensus 395 ~~~~~~~~~~~~~~l~~ai~~il~~~ 420 (464)
-+.+++.+++.+++++.
T Consensus 311 ---------~~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 311 ---------SDPEALANKIDEILKMS 327 (360)
T ss_pred ---------CCHHHHHHHHHHHHhCC
Confidence 47889999999999543
No 74
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.78 E-value=9.4e-06 Score=81.09 Aligned_cols=148 Identities=13% Similarity=0.164 Sum_probs=87.7
Q ss_pred cEEEEecCCCCCCCHHhHHHHHHHHhhCC--CceEEEEccCCCCCCCCcCCcccccCCchhHHHhhc--CCCCcEEecCc
Q 048562 253 SVLYISFGSLARLSPEQLLEIAYGLEASN--HSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMG--ESKRGLIIRGW 328 (464)
Q Consensus 253 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~nv~v~~~ 328 (464)
+.+++..|.+.......+..+++++.+.. .++++ +|.. + .-+.+.+.+. ..+.+|...+|
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~i-vG~g----------~-----~~~~l~~~~~~~~l~~~v~f~G~ 243 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHI-IGDG----------S-----DFEKCKAYSRELGIEQRIIWHGW 243 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEE-EeCC----------c-----cHHHHHHHHHHcCCCCeEEEecc
Confidence 35666777765323345667777777653 33333 3333 1 1112222221 12568999998
Q ss_pred ccH--HH---HhcccCceeecc--c--cchhhHHHHHHcCCceeecc-cccccchhHHHHHhhhcceEEeccccccCCCC
Q 048562 329 APQ--LL---ILEHTAVGGFMT--H--CGWNSTLESVSAGVPMVTWP-ITAEQFSNEKLISDVLKIGVKVGSVNWVSWST 398 (464)
Q Consensus 329 vpq--~~---lL~~~~~~~~It--H--GG~~s~~Eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~ 398 (464)
+++ .. .+..+++ +|. + |-..++.||+++|+|+|+.- ..+ ....+ +.-..|..++.
T Consensus 244 ~~~~~~~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~~-------- 308 (359)
T PRK09922 244 QSQPWEVVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYTP-------- 308 (359)
T ss_pred cCCcHHHHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEECC--------
Confidence 743 22 3444565 553 3 33579999999999999875 322 22345 45557888854
Q ss_pred CCCCccChHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHH
Q 048562 399 EPSAAVGRDKVEVAVKRLMGTGE--EAAEMRRRAGELGEK 436 (464)
Q Consensus 399 ~~~~~~~~~~l~~ai~~il~~~~--~~~~~~~~a~~l~~~ 436 (464)
-+.+++.++|.++++|++ ..+.++++++++.+.
T Consensus 309 -----~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~ 343 (359)
T PRK09922 309 -----GNIDEFVGKLNKVISGEVKYQHDAIPNSIERFYEV 343 (359)
T ss_pred -----CCHHHHHHHHHHHHhCcccCCHHHHHHHHHHhhHH
Confidence 489999999999999984 233445555555444
No 75
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.77 E-value=7.6e-06 Score=81.54 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=68.8
Q ss_pred CCcEEecCcccHHH---HhcccCceeeccc----------cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceE
Q 048562 320 KRGLIIRGWAPQLL---ILEHTAVGGFMTH----------CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGV 386 (464)
Q Consensus 320 ~~nv~v~~~vpq~~---lL~~~~~~~~ItH----------GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 386 (464)
..++...+++|+.+ ++..+++ +|.. |-.+++.||+++|+|+|+-+.. .+...+ +..+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeE
Confidence 56888999998654 4777777 4432 2357999999999999987653 366666 4777888
Q ss_pred EeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048562 387 KVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGEL 433 (464)
Q Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 433 (464)
.++. -+.+++.++|.++++|++..+.+.+++++.
T Consensus 317 ~~~~-------------~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 350 (367)
T cd05844 317 LVPE-------------GDVAALAAALGRLLADPDLRARMGAAGRRR 350 (367)
T ss_pred EECC-------------CCHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 8864 378999999999999875444555555443
No 76
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.74 E-value=1.1e-05 Score=80.03 Aligned_cols=83 Identities=12% Similarity=0.057 Sum_probs=58.5
Q ss_pred CCcEEecCccc-HHHHhcccCceeeccc----cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecccccc
Q 048562 320 KRGLIIRGWAP-QLLILEHTAVGGFMTH----CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWV 394 (464)
Q Consensus 320 ~~nv~v~~~vp-q~~lL~~~~~~~~ItH----GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 394 (464)
..++...++.. -..++..+++ +|.- |-.+++.||+++|+|+|+....+ ....+ +. +.|.....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~~---- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSLD---- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeCC----
Confidence 46788878753 3667877887 4432 44689999999999999865433 34445 35 66655533
Q ss_pred CCCCCCCCccChHHHHHHHHHHhcCChHH
Q 048562 395 SWSTEPSAAVGRDKVEVAVKRLMGTGEEA 423 (464)
Q Consensus 395 ~~~~~~~~~~~~~~l~~ai~~il~~~~~~ 423 (464)
-++++++++|.++++|++..
T Consensus 316 ---------~~~~~~a~~i~~l~~~~~~~ 335 (358)
T cd03812 316 ---------ESPEIWAEEILKLKSEDRRE 335 (358)
T ss_pred ---------CCHHHHHHHHHHHHhCcchh
Confidence 35799999999999998433
No 77
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.69 E-value=1.4e-05 Score=78.21 Aligned_cols=111 Identities=18% Similarity=0.159 Sum_probs=70.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
|||.+--. ..-|+.-+..+.++|.++||+|.+.+-... .+...+.. .++.+..+... .......+.
T Consensus 1 MkIwiDi~-~p~hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~~-----yg~~y~~iG~~------g~~~~~Kl~ 66 (335)
T PF04007_consen 1 MKIWIDIT-HPAHVHFFKNIIRELEKRGHEVLITARDKD--ETEELLDL-----YGIDYIVIGKH------GDSLYGKLL 66 (335)
T ss_pred CeEEEECC-CchHHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHHH-----cCCCeEEEcCC------CCCHHHHHH
Confidence 34544433 344999999999999999999998776533 22222221 25666665310 011111111
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEec
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNG 134 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~ 134 (464)
. .....-++.+++++.+||++|+- ....+..+|..+|+|+|.+.=
T Consensus 67 ~-~~~R~~~l~~~~~~~~pDv~is~-~s~~a~~va~~lgiP~I~f~D 111 (335)
T PF04007_consen 67 E-SIERQYKLLKLIKKFKPDVAISF-GSPEAARVAFGLGIPSIVFND 111 (335)
T ss_pred H-HHHHHHHHHHHHHhhCCCEEEec-CcHHHHHHHHHhCCCeEEEec
Confidence 1 12234566777888999999975 344677899999999999853
No 78
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.68 E-value=1.9e-05 Score=80.04 Aligned_cols=103 Identities=12% Similarity=0.020 Sum_probs=60.6
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHH
Q 048562 17 GGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEP 96 (464)
Q Consensus 17 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (464)
..|--.-+..+++.|.++||+|+++++.......... . ..++.++.+|...... ......+ ......
T Consensus 13 ~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~-~-----~~~i~v~~~p~~~~~~---~~~~~~~----~~~~~~ 79 (398)
T cd03796 13 LGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRY-L-----TNGLKVYYLPFVVFYN---QSTLPTF----FGTFPL 79 (398)
T ss_pred cccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCccc-c-----cCceeEEEecceeccC---Cccccch----hhhHHH
Confidence 4555678899999999999999999975321110000 0 1245555554221100 0001111 112346
Q ss_pred HHHhhhhCCCCEEEeCCCch----hhHHHHHHcCCCeEEE
Q 048562 97 LKSLLVDSRPDCIVHDMFHH----WSADVINSMNIPRIVF 132 (464)
Q Consensus 97 l~~~l~~~~pD~Vi~D~~~~----~~~~~A~~~giP~v~~ 132 (464)
+.+.++..+||+|.+-.... .+..+++.+++|+|..
T Consensus 80 l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 80 LRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred HHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 66777788999999876432 2455678899998875
No 79
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.67 E-value=2.5e-05 Score=80.35 Aligned_cols=95 Identities=14% Similarity=0.118 Sum_probs=65.0
Q ss_pred CCcEEecCcccHHHH---hccc--Cceeecccc---c-hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecc
Q 048562 320 KRGLIIRGWAPQLLI---LEHT--AVGGFMTHC---G-WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGS 390 (464)
Q Consensus 320 ~~nv~v~~~vpq~~l---L~~~--~~~~~ItHG---G-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 390 (464)
.++|...+++++.++ +..+ ++.+||... | ..++.||+++|+|+|+.... .....+ +.-..|..++.
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv-~~~~~G~lv~~ 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDII-ANCRNGLLVDV 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHh-cCCCcEEEeCC
Confidence 456777777776554 5444 123376543 3 46999999999999987543 344555 35557888865
Q ss_pred ccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048562 391 VNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGE 432 (464)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~ 432 (464)
. ++++++++|.++++|++..+.+.+++++
T Consensus 391 ~-------------d~~~la~~i~~ll~~~~~~~~~~~~a~~ 419 (439)
T TIGR02472 391 L-------------DLEAIASALEDALSDSSQWQLWSRNGIE 419 (439)
T ss_pred C-------------CHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 4 7899999999999987544455555544
No 80
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.65 E-value=2.7e-05 Score=78.02 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=64.2
Q ss_pred CcEEecCccc-HHHHhcccCceeeccc--cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCC
Q 048562 321 RGLIIRGWAP-QLLILEHTAVGGFMTH--CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWS 397 (464)
Q Consensus 321 ~nv~v~~~vp-q~~lL~~~~~~~~ItH--GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 397 (464)
.++.+.++.. -..++..+++-++-++ |-.+++.||+++|+|+|+... ..+...+ +.-..|..++..
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i-~~~~~g~~~~~~------ 323 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELV-QHGVTGALVPPG------ 323 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHh-cCCCceEEeCCC------
Confidence 4455555543 4677888888222233 345799999999999999664 3355556 455678877653
Q ss_pred CCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048562 398 TEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGEL 433 (464)
Q Consensus 398 ~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 433 (464)
+.+++.++|.++++|++..+.+.+++++.
T Consensus 324 -------d~~~la~~i~~l~~~~~~~~~~~~~a~~~ 352 (374)
T TIGR03088 324 -------DAVALARALQPYVSDPAARRAHGAAGRAR 352 (374)
T ss_pred -------CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 78899999999999875444455555543
No 81
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.64 E-value=6.6e-05 Score=74.46 Aligned_cols=89 Identities=21% Similarity=0.243 Sum_probs=55.8
Q ss_pred CCcEEecCcccHHH---HhcccCceeecccc----ch-hhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccc
Q 048562 320 KRGLIIRGWAPQLL---ILEHTAVGGFMTHC----GW-NSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSV 391 (464)
Q Consensus 320 ~~nv~v~~~vpq~~---lL~~~~~~~~ItHG----G~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 391 (464)
.++|...+++++.+ ++..+++ ++.+. |. +++.||+++|+|+|+..... +...+ +. -|..++..
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~~~~ 317 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYFKVG 317 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEecCc
Confidence 57899999998765 4555665 44333 32 58999999999999875432 22223 23 34444322
Q ss_pred cccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048562 392 NWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGE 432 (464)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~ 432 (464)
+ .+.++|.++++|++....+.+++++
T Consensus 318 -------------~--~l~~~i~~l~~~~~~~~~~~~~~~~ 343 (363)
T cd04955 318 -------------D--DLASLLEELEADPEEVSAMAKAARE 343 (363)
T ss_pred -------------h--HHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 1 2999999999987444344444443
No 82
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.61 E-value=5.7e-05 Score=74.09 Aligned_cols=130 Identities=9% Similarity=0.048 Sum_probs=78.0
Q ss_pred EEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHH--
Q 048562 255 LYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQL-- 332 (464)
Q Consensus 255 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~-- 332 (464)
+++..|... ..+....+++++++.+.++++.-... .. ..+-....+... ..+++...+++++.
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~----------~~--~~~~~~~~~~~~-~~~~v~~~G~~~~~~~ 237 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVS----------DP--DYFYREIAPELL-DGPDIEYLGEVGGAEK 237 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCC----------CH--HHHHHHHHHhcc-cCCcEEEeCCCCHHHH
Confidence 444557664 34445667788888887766654332 00 001001111100 14689999999875
Q ss_pred -HHhcccCceeecc--ccc-hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHH
Q 048562 333 -LILEHTAVGGFMT--HCG-WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDK 408 (464)
Q Consensus 333 -~lL~~~~~~~~It--HGG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~ 408 (464)
.+++.+++-++-+ +-| ..++.||+++|+|+|+.... .+...+ +.-..|..++ . .++
T Consensus 238 ~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~~~~g~l~~-------------~--~~~ 297 (335)
T cd03802 238 AELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-EDGVTGFLVD-------------S--VEE 297 (335)
T ss_pred HHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eCCCcEEEeC-------------C--HHH
Confidence 4577788743333 234 45899999999999987542 333344 2333566651 2 889
Q ss_pred HHHHHHHHhcC
Q 048562 409 VEVAVKRLMGT 419 (464)
Q Consensus 409 l~~ai~~il~~ 419 (464)
+.++|.+++..
T Consensus 298 l~~~l~~l~~~ 308 (335)
T cd03802 298 LAAAVARADRL 308 (335)
T ss_pred HHHHHHHHhcc
Confidence 99999998764
No 83
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.60 E-value=6.5e-05 Score=73.95 Aligned_cols=319 Identities=15% Similarity=0.152 Sum_probs=177.5
Q ss_pred CccCHHHHHHHHHHHHhC--CCcEEEEe-CCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhh
Q 048562 17 GGGHQIPMVDIARIFAAH--GAKSTIIT-SPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSML 93 (464)
Q Consensus 17 ~~GH~~p~l~la~~L~~r--Gh~Vt~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (464)
+.|-++-..+|.++|.++ ++.+++-+ ++...+.+.... |..+....+|.+ .
T Consensus 58 SVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~------~~~v~h~YlP~D--------------------~ 111 (419)
T COG1519 58 SVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF------GDSVIHQYLPLD--------------------L 111 (419)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc------CCCeEEEecCcC--------------------c
Confidence 899999999999999999 89988877 555556555542 223444455421 1
Q ss_pred HHHHHHhhhhCCCCEEEeCCCch--hhHHHHHHcCCCeEEEecc-chHHHHHHHHHHhhCCCCCCCCCCCceecCCCCCc
Q 048562 94 QEPLKSLLVDSRPDCIVHDMFHH--WSADVINSMNIPRIVFNGN-CCFSRCILENVRKYKPHEKVSSDYEPFVVPGLPDK 170 (464)
Q Consensus 94 ~~~l~~~l~~~~pD~Vi~D~~~~--~~~~~A~~~giP~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 170 (464)
...+++.++..+||++|.-.... ....-++..|+|.+.++.= +.-++..+....
T Consensus 112 ~~~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~----------------------- 168 (419)
T COG1519 112 PIAVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNARLSDRSFARYAKLK----------------------- 168 (419)
T ss_pred hHHHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHH-----------------------
Confidence 34566778889999988766544 5666788899999998531 111111000000
Q ss_pred cccChhhhhhhccccEEEEcCccccChHHHHHHHhhhCCCCeEEeCcccccccCcchhhhcCCCCCCCc---cccccccC
Q 048562 171 IELTALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDE---GKILSFLD 247 (464)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~ 247 (464)
.+.+ ..+.+-+.++..+ +.+.+. +. .+|.+++..+|.+-........ +. +.+...++
T Consensus 169 -~~~~---~~~~~i~li~aQs--e~D~~R---f~-~LGa~~v~v~GNlKfd~~~~~~----------~~~~~~~~r~~l~ 228 (419)
T COG1519 169 -FLAR---LLFKNIDLILAQS--EEDAQR---FR-SLGAKPVVVTGNLKFDIEPPPQ----------LAAELAALRRQLG 228 (419)
T ss_pred -HHHH---HHHHhcceeeecC--HHHHHH---HH-hcCCcceEEecceeecCCCChh----------hHHHHHHHHHhcC
Confidence 0000 1122233333333 222222 22 2334556667754322110000 11 12233333
Q ss_pred cCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhC--CCceEEEEccCCCCCCCCcCCcccccCCchhHHHhh---------
Q 048562 248 SKETNSVLYISFGSLARLSPEQLLEIAYGLEAS--NHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERM--------- 316 (464)
Q Consensus 248 ~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~--------- 316 (464)
.. + .+.|..+|.. ...+.......++.+. +...||+=.-. +.+.. . +++..+.
T Consensus 229 ~~--r-~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVPRHp----------ERf~~-v-~~l~~~~gl~~~~rS~ 292 (419)
T COG1519 229 GH--R-PVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVPRHP----------ERFKA-V-ENLLKRKGLSVTRRSQ 292 (419)
T ss_pred CC--C-ceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEecCCh----------hhHHH-H-HHHHHHcCCeEEeecC
Confidence 32 2 3444444422 2344444455555443 23444442111 12111 0 0111000
Q ss_pred ---cCCCCcEEecCccc-HHHHhcccCcee-----eccccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEE
Q 048562 317 ---GESKRGLIIRGWAP-QLLILEHTAVGG-----FMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVK 387 (464)
Q Consensus 317 ---~~~~~nv~v~~~vp-q~~lL~~~~~~~-----~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~ 387 (464)
.....+|.+.+-+- ...++.-+++ + ++.+||+| ..|.+++|+|+|.-|...-|.+-++++ +..|.|+.
T Consensus 293 ~~~~~~~tdV~l~DtmGEL~l~y~~adi-AFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l-~~~ga~~~ 369 (419)
T COG1519 293 GDPPFSDTDVLLGDTMGELGLLYGIADI-AFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERL-LQAGAGLQ 369 (419)
T ss_pred CCCCCCCCcEEEEecHhHHHHHHhhccE-EEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHH-HhcCCeEE
Confidence 00022455555442 3444444554 3 45689987 679999999999999999999999999 69999999
Q ss_pred eccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 048562 388 VGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAK 438 (464)
Q Consensus 388 l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~ 438 (464)
++ +++.|.+++..+++|++..+.|.+++.++=+..+
T Consensus 370 v~---------------~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 370 VE---------------DADLLAKAVELLLADEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred EC---------------CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 93 3678888999888887666667666666655555
No 84
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.56 E-value=6.9e-05 Score=75.39 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=87.5
Q ss_pred EEEEecCCCCCCCHHhHHHHHHHHhhC--CCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCC---CCcEEe-cC
Q 048562 254 VLYISFGSLARLSPEQLLEIAYGLEAS--NHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGES---KRGLII-RG 327 (464)
Q Consensus 254 ~V~vs~GS~~~~~~~~~~~~~~al~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~---~~nv~v-~~ 327 (464)
.+++..|.+. ..+.+..+++++..+ +.++++..++. .. .. +-+.+.+...+. ..++.. ..
T Consensus 202 ~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~----------~~-~~-~~~~~~~~~~~~~~~~~~v~~~~~ 267 (388)
T TIGR02149 202 PYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAP----------DT-PE-VAEEVRQAVALLDRNRTGIIWINK 267 (388)
T ss_pred eEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCC----------Cc-HH-HHHHHHHHHHHhccccCceEEecC
Confidence 4566667765 334466667777664 45555554433 00 00 111122111100 223443 45
Q ss_pred cccH---HHHhcccCceeeccc----cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCC
Q 048562 328 WAPQ---LLILEHTAVGGFMTH----CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEP 400 (464)
Q Consensus 328 ~vpq---~~lL~~~~~~~~ItH----GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~ 400 (464)
+++. ..++..+++ +|.- |...++.||+++|+|+|+... ......+ +..+.|..++..+ .
T Consensus 268 ~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~-------~ 333 (388)
T TIGR02149 268 MLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDN-------S 333 (388)
T ss_pred CCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCC-------C
Confidence 6764 446777887 5532 334678999999999998654 3455566 4666788886540 0
Q ss_pred CCccChHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 048562 401 SAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELG 434 (464)
Q Consensus 401 ~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 434 (464)
+..-..+++.++|.++++|++..+.+.+++++..
T Consensus 334 ~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~ 367 (388)
T TIGR02149 334 DADGFQAELAKAINILLADPELAKKMGIAGRKRA 367 (388)
T ss_pred cccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 0011238899999999998765556666665543
No 85
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.50 E-value=0.00014 Score=80.29 Aligned_cols=98 Identities=19% Similarity=0.133 Sum_probs=67.6
Q ss_pred CCcEEecCcccHHH---HhcccC--ceeeccc---cc-hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecc
Q 048562 320 KRGLIIRGWAPQLL---ILEHTA--VGGFMTH---CG-WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGS 390 (464)
Q Consensus 320 ~~nv~v~~~vpq~~---lL~~~~--~~~~ItH---GG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 390 (464)
.++|...+++++.+ ++..++ ..+||.- =| ..++.||+++|+|+|+....+ ....+ +.-.-|..++.
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEECC
Confidence 45688888887655 444442 1236664 33 469999999999999986432 33344 34456888865
Q ss_pred ccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048562 391 VNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGE 435 (464)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~ 435 (464)
-+++.|+++|.++++|++..+.+.+++.+..+
T Consensus 622 -------------~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~ 653 (1050)
T TIGR02468 622 -------------HDQQAIADALLKLVADKQLWAECRQNGLKNIH 653 (1050)
T ss_pred -------------CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 38899999999999998666667776665543
No 86
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.49 E-value=6.3e-06 Score=81.19 Aligned_cols=156 Identities=15% Similarity=0.026 Sum_probs=88.2
Q ss_pred cEEEEecCCCCCCCHHhHHHHHHHHhhCCCc-eEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccH
Q 048562 253 SVLYISFGSLARLSPEQLLEIAYGLEASNHS-FIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQ 331 (464)
Q Consensus 253 ~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq 331 (464)
++|.+-.||-...-...+-.++++...+..+ .++.+... .+ . +.+.+...+ ...+.+.+ ..
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a----------~~----~-~~i~~~~~~-~~~~~~~~--~~ 229 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSF----------FK----G-KDLKEIYGD-ISEFEISY--DT 229 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCC----------Cc----H-HHHHHHHhc-CCCcEEec--cH
Confidence 6899999998753334444444555543322 23333222 01 1 122222211 12222322 44
Q ss_pred HHHhcccCceeeccccchhhHHHHHHcCCceeeccc--ccccchhHHHHHh---hhcceEEecc----ccccCCCCCCCC
Q 048562 332 LLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPI--TAEQFSNEKLISD---VLKIGVKVGS----VNWVSWSTEPSA 402 (464)
Q Consensus 332 ~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~--~~DQ~~na~~v~~---~~G~G~~l~~----~~~~~~~~~~~~ 402 (464)
.+++..+++ +|+-.|..|+ |+...|+|||+ ++ ..-|+.||+++ . ..|+.-.+-. +....+ =...
T Consensus 230 ~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~l-v~~~~igL~Nii~~~~~~~~vvPE--llQ~ 302 (347)
T PRK14089 230 HKALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMF-VKLKHIGLANIFFDFLGKEPLHPE--LLQE 302 (347)
T ss_pred HHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHH-HcCCeeehHHHhcCCCcccccCch--hhcc
Confidence 678888888 9999999999 99999999998 44 45789999998 4 3333322210 000000 0012
Q ss_pred ccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 048562 403 AVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAK 438 (464)
Q Consensus 403 ~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~ 438 (464)
.+|++.|.+++.+. . .+.+++...++++.+.
T Consensus 303 ~~t~~~la~~i~~~-~----~~~~~~~~~~l~~~l~ 333 (347)
T PRK14089 303 FVTVENLLKAYKEM-D----REKFFKKSKELREYLK 333 (347)
T ss_pred cCCHHHHHHHHHHH-H----HHHHHHHHHHHHHHhc
Confidence 68899999999872 1 1256666666666543
No 87
>PLN02275 transferase, transferring glycosyl groups
Probab=98.43 E-value=0.00036 Score=70.11 Aligned_cols=121 Identities=9% Similarity=-0.113 Sum_probs=66.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCC-cEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcc-
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGA-KSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSA- 84 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh-~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~- 84 (464)
+.|+.+...+-.|.-..+..++..|+++|| +|++++........+.. .+.++.++.++.+.... .......
T Consensus 4 ~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~------~~~~v~v~r~~~~~~~~-~~~~~~~~ 76 (371)
T PLN02275 4 RGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALL------NHPSIHIHLMVQPRLLQ-RLPRVLYA 76 (371)
T ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHh------cCCcEEEEECCCccccc-ccccchHH
Confidence 455666666788888999999999999986 79999865432111111 13357777765321111 0001111
Q ss_pred -cHHHHHhhhHHHHHHh--hhhCCCCEEEeCCCch-----hhHHHHHHcCCCeEEEec
Q 048562 85 -TPRTDTSMLQEPLKSL--LVDSRPDCIVHDMFHH-----WSADVINSMNIPRIVFNG 134 (464)
Q Consensus 85 -~~~~~~~~~~~~l~~~--l~~~~pD~Vi~D~~~~-----~~~~~A~~~giP~v~~~~ 134 (464)
.+..........+... ++..+||+|++-.... .+..+++..++|++..+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h 134 (371)
T PLN02275 77 LALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWH 134 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcC
Confidence 0111110111222222 3568999999853221 234456678999987643
No 88
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.42 E-value=9.6e-05 Score=74.91 Aligned_cols=95 Identities=22% Similarity=0.230 Sum_probs=65.7
Q ss_pred CCcEEecCcccH-HHHhcccCceeeccc--cch-hhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccC
Q 048562 320 KRGLIIRGWAPQ-LLILEHTAVGGFMTH--CGW-NSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVS 395 (464)
Q Consensus 320 ~~nv~v~~~vpq-~~lL~~~~~~~~ItH--GG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 395 (464)
..+|.+.+++++ ..++..+++-++-++ .|. +.+.||+.+|+|+|+.+...+. .. +..|.|..+. .
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~-~~~~~g~lv~-~---- 347 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----ID-ALPGAELLVA-A---- 347 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEecCccccc-----cc-ccCCcceEeC-C----
Confidence 567888899874 557788887322232 354 4799999999999998753321 12 2446677663 3
Q ss_pred CCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 048562 396 WSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELG 434 (464)
Q Consensus 396 ~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 434 (464)
+++++.++|.++++|++..+.+.+++++..
T Consensus 348 ---------~~~~la~ai~~ll~~~~~~~~~~~~ar~~v 377 (397)
T TIGR03087 348 ---------DPADFAAAILALLANPAEREELGQAARRRV 377 (397)
T ss_pred ---------CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 789999999999998755555666665543
No 89
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.39 E-value=9.3e-05 Score=73.09 Aligned_cols=94 Identities=15% Similarity=0.206 Sum_probs=63.3
Q ss_pred CCcEEecCcccHH---HHhcccCceeeccc----cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecccc
Q 048562 320 KRGLIIRGWAPQL---LILEHTAVGGFMTH----CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVN 392 (464)
Q Consensus 320 ~~nv~v~~~vpq~---~lL~~~~~~~~ItH----GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 392 (464)
..++...+++|+. .++..+++ +|.- |..+++.||+++|+|+|+.... .....+ +. .|..+..
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~-~~--~~~~~~~-- 320 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVA-GD--AALYFDP-- 320 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----Ccccee-cC--ceeeeCC--
Confidence 6789999999865 45666776 4432 3356899999999999986542 122222 22 3555543
Q ss_pred ccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 048562 393 WVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGE 435 (464)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~ 435 (464)
-+.+++.++|.+++.|++..+.+.+++++..+
T Consensus 321 -----------~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 352 (365)
T cd03809 321 -----------LDPEALAAAIERLLEDPALREELRERGLARAK 352 (365)
T ss_pred -----------CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 37899999999999998555555555554333
No 90
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.36 E-value=0.0001 Score=73.23 Aligned_cols=127 Identities=10% Similarity=0.113 Sum_probs=85.8
Q ss_pred EEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHH--
Q 048562 255 LYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQL-- 332 (464)
Q Consensus 255 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~-- 332 (464)
.++..|.+. .......++++++.++.+++++-.+. ..+.+.+.. .+||...+++|+.
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~----------------~~~~l~~~~---~~~V~~~g~~~~~~~ 255 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP----------------ELDRLRAKA---GPNVTFLGRVSDEEL 255 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh----------------hHHHHHhhc---CCCEEEecCCCHHHH
Confidence 344567765 33457778888888887766554332 112222222 6799999999974
Q ss_pred -HHhcccCceeeccccch-hhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHH
Q 048562 333 -LILEHTAVGGFMTHCGW-NSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVE 410 (464)
Q Consensus 333 -~lL~~~~~~~~ItHGG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~ 410 (464)
.++..+++-++-+.-|. .++.||+++|+|+|+....+ ....+ +.-+.|..++.. +.+++.
T Consensus 256 ~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~~-------------~~~~la 317 (351)
T cd03804 256 RDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEEQ-------------TVESLA 317 (351)
T ss_pred HHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCCC-------------CHHHHH
Confidence 46777887333344443 46789999999999976433 33445 466678888653 788899
Q ss_pred HHHHHHhcCC
Q 048562 411 VAVKRLMGTG 420 (464)
Q Consensus 411 ~ai~~il~~~ 420 (464)
++|.++++|+
T Consensus 318 ~~i~~l~~~~ 327 (351)
T cd03804 318 AAVERFEKNE 327 (351)
T ss_pred HHHHHHHhCc
Confidence 9999999987
No 91
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.34 E-value=0.00019 Score=71.89 Aligned_cols=320 Identities=16% Similarity=0.169 Sum_probs=165.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEeCCcchh-hh---hhhhhhccCCCCCeEEEEecCCCCCC--CCCCC
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAH-GAKSTIITSPKHAL-SF---QKSINRNQQSGLPITIKTLHLPDDIE--IPDTD 81 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~-~~---~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~ 81 (464)
||+++. +++..+.-+.++.++|.+. +.++.++.+....+ .. ...... .+|... .... ... .
T Consensus 2 ki~~v~-GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~-----~~~~~~-----~~~~~~~~~-~ 69 (365)
T TIGR03568 2 KICVVT-GTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEK-----DGFDID-----EKIEILLDS-D 69 (365)
T ss_pred eEEEEE-ecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHH-----cCCCCC-----CccccccCC-C
Confidence 565554 5888999999999999985 78888776653322 11 111000 012110 0111 111 1
Q ss_pred CcccHHHHHhhhHHHHHHhhhhCCCCEEEeCC-Cc-h-hhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCC
Q 048562 82 MSATPRTDTSMLQEPLKSLLVDSRPDCIVHDM-FH-H-WSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSD 158 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~-~~-~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (464)
....+...+..+...+.+++++.+||+|++-. .+ . +++.+|..+|||++-+..+-.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~r--------------------- 128 (365)
T TIGR03568 70 SNAGMAKSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEV--------------------- 128 (365)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCcc---------------------
Confidence 12244555556678899999999999999876 32 2 678899999999996633210
Q ss_pred CCceecCCCCCccccChhhhhhhccccEEEEcCccccChHHHHH-HHhhhCCCCeEEeCcccccccCcchhhhcCCCCCC
Q 048562 159 YEPFVVPGLPDKIELTALSFRFEEKSFGIVVNSFYDLEPAYVEY-FKQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSI 237 (464)
Q Consensus 159 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~ 237 (464)
. . +.++. ..+. ...+...+.+-. ....... .+....+.+++.+|......-.... ..
T Consensus 129 -s-~---~~~eE--~~r~---~i~~la~l~f~~----t~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~--------~~ 186 (365)
T TIGR03568 129 -T-E---GAIDE--SIRH---AITKLSHLHFVA----TEEYRQRVIQMGEDPDRVFNVGSPGLDNILSLD--------LL 186 (365)
T ss_pred -C-C---CCchH--HHHH---HHHHHHhhccCC----CHHHHHHHHHcCCCCCcEEEECCcHHHHHHhhh--------cc
Confidence 0 0 00110 0000 001100011000 0111111 1122213467778843322110000 00
Q ss_pred CccccccccCcCCCCcEEEEecCCCC--C-CCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHH
Q 048562 238 DEGKILSFLDSKETNSVLYISFGSLA--R-LSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEE 314 (464)
Q Consensus 238 ~~~~l~~~l~~~~~~~~V~vs~GS~~--~-~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~ 314 (464)
..+++.+.+.-..+++.|+|++=... . ...+.+..+++++.+.+..+++..... +|... . +-..+.+
T Consensus 187 ~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~--~p~~~----~----i~~~i~~ 256 (365)
T TIGR03568 187 SKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNA--DAGSR----I----INEAIEE 256 (365)
T ss_pred CHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCC--CCCch----H----HHHHHHH
Confidence 11222222221113458778775443 3 346779999999988776666655332 01000 0 1111111
Q ss_pred hhcCCCCcEEecCcc---cHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccc
Q 048562 315 RMGESKRGLIIRGWA---PQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSV 391 (464)
Q Consensus 315 ~~~~~~~nv~v~~~v---pq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 391 (464)
...+ .+|+.+.+-+ ....++.++++ +|+.++.+- .||...|+|+|.+- + |- |-.-.|..+-.-
T Consensus 257 ~~~~-~~~v~l~~~l~~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~------R~-e~~~~g~nvl~v 322 (365)
T TIGR03568 257 YVNE-HPNFRLFKSLGQERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---T------RQ-KGRLRADSVIDV 322 (365)
T ss_pred HhcC-CCCEEEECCCChHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---C------Cc-hhhhhcCeEEEe
Confidence 1110 3578777654 45667888887 998886555 89999999999874 2 21 122223221101
Q ss_pred cccCCCCCCCCccChHHHHHHHHHHhc
Q 048562 392 NWVSWSTEPSAAVGRDKVEVAVKRLMG 418 (464)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~ai~~il~ 418 (464)
..++++|.++++++++
T Consensus 323 -----------g~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 323 -----------DPDKEEIVKAIEKLLD 338 (365)
T ss_pred -----------CCCHHHHHHHHHHHhC
Confidence 3578999999999654
No 92
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.32 E-value=0.0019 Score=69.85 Aligned_cols=95 Identities=9% Similarity=0.043 Sum_probs=60.5
Q ss_pred CCcEEecCcc-cH---HHHhcc-cC-ceeeccc----cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEec
Q 048562 320 KRGLIIRGWA-PQ---LLILEH-TA-VGGFMTH----CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVG 389 (464)
Q Consensus 320 ~~nv~v~~~v-pq---~~lL~~-~~-~~~~ItH----GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 389 (464)
.++|...++. +. .+++.+ ++ .++||.- +-..++.||+++|+|+|+.-. ......+ +.-.-|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV-~dg~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEII-QDGVSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEEeC
Confidence 3567766664 32 345543 22 1236632 334699999999999998643 3455666 3656698887
Q ss_pred cccccCCCCCCCCccChHHHHHHHHHHh----cCChHHHHHHHHHHH
Q 048562 390 SVNWVSWSTEPSAAVGRDKVEVAVKRLM----GTGEEAAEMRRRAGE 432 (464)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~ai~~il----~~~~~~~~~~~~a~~ 432 (464)
.. ++++++++|.+++ .|++..+.+.+++.+
T Consensus 693 p~-------------D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~ 726 (784)
T TIGR02470 693 PY-------------HGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQ 726 (784)
T ss_pred CC-------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 64 7888999998876 576555555555543
No 93
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.30 E-value=9.2e-06 Score=80.50 Aligned_cols=300 Identities=16% Similarity=0.160 Sum_probs=145.1
Q ss_pred HHHHhC-CCcEEEEeCCcc-hhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHHHHHhhhhCCC
Q 048562 29 RIFAAH-GAKSTIITSPKH-ALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEPLKSLLVDSRP 106 (464)
Q Consensus 29 ~~L~~r-Gh~Vt~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~p 106 (464)
++|.++ +.++.++.+... .......... |+++.-..+. +.. .. ......+..+...+.+.+++.+|
T Consensus 1 ~~l~~~~~~~~~li~tG~H~~~~~g~~~~~----~f~i~~~~~~------l~~-~~-~~~~~~~~~~~~~~~~~~~~~~P 68 (346)
T PF02350_consen 1 KALQKDPGFELILIVTGQHLDPEMGDTFFE----GFGIPKPDYL------LDS-DS-QSMAKSTGLAIIELADVLEREKP 68 (346)
T ss_dssp -HHHCSTTEEEEEEEECSS--CHHHHHHHH----HTT--SEEEE--------S-TT-S-HHHHHHHHHHHHHHHHHHHT-
T ss_pred ChhhhCCCCCEEEEEeCCCCCHHHHHHHHh----hCCCCCCCcc------ccc-cc-chHHHHHHHHHHHHHHHHHhcCC
Confidence 467777 888887765443 2222222111 2333111111 111 12 45556666778899999999999
Q ss_pred CEEEeCC--Cch-hhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCceecCCCCCccccChhhhhhhcc
Q 048562 107 DCIVHDM--FHH-WSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVVPGLPDKIELTALSFRFEEK 183 (464)
Q Consensus 107 D~Vi~D~--~~~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 183 (464)
|+||+=. +.. +++.+|..++||++=+..+ ..+. . .-.+.++.. .+ ....+
T Consensus 69 d~Vlv~GD~~~~la~alaA~~~~ipv~HieaG-lRs~--------------------d-~~~g~~de~--~R---~~i~~ 121 (346)
T PF02350_consen 69 DAVLVLGDRNEALAAALAAFYLNIPVAHIEAG-LRSG--------------------D-RTEGMPDEI--NR---HAIDK 121 (346)
T ss_dssp SEEEEETTSHHHHHHHHHHHHTT-EEEEES------S----------------------TTSSTTHHH--HH---HHHHH
T ss_pred CEEEEEcCCchHHHHHHHHHHhCCCEEEecCC-CCcc--------------------c-cCCCCchhh--hh---hhhhh
Confidence 9998754 333 6788999999996655222 0000 0 000122211 00 11111
Q ss_pred -ccEEEEcCccccChHHHHHHH-hhhCCCCeEEeCcccccccCcchhhhcCCCCCCCcccc--ccccCcCCCCcEEEEec
Q 048562 184 -SFGIVVNSFYDLEPAYVEYFK-QDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSIDEGKI--LSFLDSKETNSVLYISF 259 (464)
Q Consensus 184 -~~~~~~~~~~~l~~~~~~~~~-~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~~~~~~~V~vs~ 259 (464)
++..++.+ +...+.+. ....+.+++.||......-.... .. ..+.+ .+++.. .+++.|++++
T Consensus 122 la~lhf~~t-----~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~--~~------~~~~~~~~~i~~~-~~~~~iLvt~ 187 (346)
T PF02350_consen 122 LAHLHFAPT-----EEARERLLQEGEPPERIFVVGNPGIDALLQNK--EE------IEEKYKNSGILQD-APKPYILVTL 187 (346)
T ss_dssp H-SEEEESS-----HHHHHHHHHTT--GGGEEE---HHHHHHHHHH--HT------TCC-HHHHHHHHC-TTSEEEEEE-
T ss_pred hhhhhccCC-----HHHHHHHHhcCCCCCeEEEEChHHHHHHHHhH--HH------HhhhhhhHHHHhc-cCCCEEEEEe
Confidence 22222222 22222221 11114688999964433210000 00 11111 122222 4567999998
Q ss_pred CCCCCCC-H---HhHHHHHHHHhhC-CCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCccc---H
Q 048562 260 GSLARLS-P---EQLLEIAYGLEAS-NHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAP---Q 331 (464)
Q Consensus 260 GS~~~~~-~---~~~~~~~~al~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vp---q 331 (464)
=...+.. + +.+..+++++.+. +..+||.+... +. ....+.+++.+. +|+++.+-++ .
T Consensus 188 H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~----------p~----~~~~i~~~l~~~-~~v~~~~~l~~~~~ 252 (346)
T PF02350_consen 188 HPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNN----------PR----GSDIIIEKLKKY-DNVRLIEPLGYEEY 252 (346)
T ss_dssp S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-----------HH----HHHHHHHHHTT--TTEEEE----HHHH
T ss_pred CcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCC----------ch----HHHHHHHHhccc-CCEEEECCCCHHHH
Confidence 5554444 3 3455566666665 77899998743 11 112334445444 5888776664 5
Q ss_pred HHHhcccCceeeccccchhhHH-HHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHH
Q 048562 332 LLILEHTAVGGFMTHCGWNSTL-ESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVE 410 (464)
Q Consensus 332 ~~lL~~~~~~~~ItHGG~~s~~-Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~ 410 (464)
..+|.++++ +|+..| ++. ||.+.|+|+|.+ .|+-..-.-+ ..|..+-+ ..+.++|.
T Consensus 253 l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i---R~~geRqe~r--~~~~nvlv--------------~~~~~~I~ 309 (346)
T PF02350_consen 253 LSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI---RDSGERQEGR--ERGSNVLV--------------GTDPEAII 309 (346)
T ss_dssp HHHHHHESE--EEESSH--HHHHHGGGGT--EEEC---SSS-S-HHHH--HTTSEEEE--------------TSSHHHHH
T ss_pred HHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe---cCCCCCHHHH--hhcceEEe--------------CCCHHHHH
Confidence 667888888 999999 666 999999999999 2222222222 33334333 36899999
Q ss_pred HHHHHHhcC
Q 048562 411 VAVKRLMGT 419 (464)
Q Consensus 411 ~ai~~il~~ 419 (464)
+++++++++
T Consensus 310 ~ai~~~l~~ 318 (346)
T PF02350_consen 310 QAIEKALSD 318 (346)
T ss_dssp HHHHHHHH-
T ss_pred HHHHHHHhC
Confidence 999999986
No 94
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.28 E-value=0.00099 Score=69.05 Aligned_cols=134 Identities=11% Similarity=0.087 Sum_probs=74.5
Q ss_pred cEEEEecCCCCCCCHHhHHHHHHHHhh---CCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEe-cCc
Q 048562 253 SVLYISFGSLARLSPEQLLEIAYGLEA---SNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLII-RGW 328 (464)
Q Consensus 253 ~~V~vs~GS~~~~~~~~~~~~~~al~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v-~~~ 328 (464)
..+++..|.+.. .+.+..+++|+.. .+.++++.-++. .. +.+.+.+...+.+.++.+ ..|
T Consensus 282 ~~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lvivG~g~----------~~----~~~~l~~l~~~~~~~v~~~~g~ 345 (466)
T PRK00654 282 APLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLLGTGD----------PE----LEEAFRALAARYPGKVGVQIGY 345 (466)
T ss_pred CcEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEEecCc----------HH----HHHHHHHHHHHCCCcEEEEEeC
Confidence 356666777753 3335555555544 356666553221 01 112233322223455543 455
Q ss_pred ccH--HHHhcccCceeecc---ccch-hhHHHHHHcCCceeeccccc--ccchhHHHHHhhhcceEEeccccccCCCCCC
Q 048562 329 APQ--LLILEHTAVGGFMT---HCGW-NSTLESVSAGVPMVTWPITA--EQFSNEKLISDVLKIGVKVGSVNWVSWSTEP 400 (464)
Q Consensus 329 vpq--~~lL~~~~~~~~It---HGG~-~s~~Eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~ 400 (464)
-.. ..++..+++ +|. +-|. .+.+||+.+|+|.|+....+ |...+...- ...+.|..++..
T Consensus 346 ~~~~~~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv~~~--------- 413 (466)
T PRK00654 346 DEALAHRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVFDDF--------- 413 (466)
T ss_pred CHHHHHHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEeCCC---------
Confidence 322 256777877 553 2344 48999999999999865432 222111111 123678888654
Q ss_pred CCccChHHHHHHHHHHhc
Q 048562 401 SAAVGRDKVEVAVKRLMG 418 (464)
Q Consensus 401 ~~~~~~~~l~~ai~~il~ 418 (464)
+++++.++|.++++
T Consensus 414 ----d~~~la~~i~~~l~ 427 (466)
T PRK00654 414 ----NAEDLLRALRRALE 427 (466)
T ss_pred ----CHHHHHHHHHHHHH
Confidence 78999999999886
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=0.0013 Score=70.74 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=64.0
Q ss_pred CCcEEecCcccH-HHHhcccCceeecc---ccc-hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecccccc
Q 048562 320 KRGLIIRGWAPQ-LLILEHTAVGGFMT---HCG-WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWV 394 (464)
Q Consensus 320 ~~nv~v~~~vpq-~~lL~~~~~~~~It---HGG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 394 (464)
.++|...+|.+. ..++..+++ ||. +.| -+++.||+.+|+|+|+.... .....+ +.-..|..++..
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv~~~--- 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTLPAD--- 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEeCCC---
Confidence 467888888764 567777877 543 455 47999999999999997642 344455 355568888764
Q ss_pred CCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048562 395 SWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGEL 433 (464)
Q Consensus 395 ~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 433 (464)
..+++++.+++.+++.+....+.+++++++.
T Consensus 643 --------d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~ 673 (694)
T PRK15179 643 --------TVTAPDVAEALARIHDMCAADPGIARKAADW 673 (694)
T ss_pred --------CCChHHHHHHHHHHHhChhccHHHHHHHHHH
Confidence 4566778888877765432122555555443
No 96
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.20 E-value=0.00082 Score=68.64 Aligned_cols=81 Identities=11% Similarity=0.026 Sum_probs=54.1
Q ss_pred CCcEEecCcccHHH---HhcccCceeeccc----cchhhHHHHHHcCCceeecccccccchhHHHHHh---hhcceEEec
Q 048562 320 KRGLIIRGWAPQLL---ILEHTAVGGFMTH----CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISD---VLKIGVKVG 389 (464)
Q Consensus 320 ~~nv~v~~~vpq~~---lL~~~~~~~~ItH----GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~---~~G~G~~l~ 389 (464)
.++|...+++|+.+ +|..+++ +|+- |=..++.||+++|+|+|+.-..+. ....+ + .-..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv-~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIV-VPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chhee-eccCCCCceEEe-
Confidence 46888989988654 6666776 4431 223588999999999998653321 11112 2 23456553
Q ss_pred cccccCCCCCCCCccChHHHHHHHHHHhcCCh
Q 048562 390 SVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGE 421 (464)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~ 421 (464)
. +++++.++|.+++++++
T Consensus 377 -------------~-d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 -------------S-TAEEYAEAIEKILSLSE 394 (419)
T ss_pred -------------C-CHHHHHHHHHHHHhCCH
Confidence 2 78999999999999763
No 97
>PLN00142 sucrose synthase
Probab=98.20 E-value=0.0013 Score=71.15 Aligned_cols=72 Identities=10% Similarity=0.089 Sum_probs=48.3
Q ss_pred eccc---cch-hhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHH--
Q 048562 343 FMTH---CGW-NSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRL-- 416 (464)
Q Consensus 343 ~ItH---GG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~i-- 416 (464)
||.- -|. .++.||+++|+|+|+... ......+ +.-.-|..++.. ++++++++|.++
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV-~dG~tG~LV~P~-------------D~eaLA~aI~~lLe 731 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEII-VDGVSGFHIDPY-------------HGDEAANKIADFFE 731 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEEeCCC-------------CHHHHHHHHHHHHH
Confidence 6543 444 589999999999998644 3455555 354568888664 677788887654
Q ss_pred --hcCChHHHHHHHHHHH
Q 048562 417 --MGTGEEAAEMRRRAGE 432 (464)
Q Consensus 417 --l~~~~~~~~~~~~a~~ 432 (464)
+.|++..+.+.+++.+
T Consensus 732 kLl~Dp~lr~~mg~~Ar~ 749 (815)
T PLN00142 732 KCKEDPSYWNKISDAGLQ 749 (815)
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 5677555566665544
No 98
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.16 E-value=0.001 Score=68.02 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=50.4
Q ss_pred ecCcccHHHHhcccCceeecccc----chhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCC
Q 048562 325 IRGWAPQLLILEHTAVGGFMTHC----GWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEP 400 (464)
Q Consensus 325 v~~~vpq~~lL~~~~~~~~ItHG----G~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~ 400 (464)
...+.+..+++...++ ||.-+ =.+++.||+++|+|+|+.-... + ..+ ..-+-|...
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~------------ 347 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY------------ 347 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec------------
Confidence 4455566678888877 87764 3579999999999999975432 2 333 233334333
Q ss_pred CCccChHHHHHHHHHHhcCC
Q 048562 401 SAAVGRDKVEVAVKRLMGTG 420 (464)
Q Consensus 401 ~~~~~~~~l~~ai~~il~~~ 420 (464)
-+.+++.+++.++|.+.
T Consensus 348 ---~~~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 348 ---DDGKGFVRATLKALAEE 364 (462)
T ss_pred ---CCHHHHHHHHHHHHccC
Confidence 25778999999999864
No 99
>PLN02949 transferase, transferring glycosyl groups
Probab=98.12 E-value=0.016 Score=59.94 Aligned_cols=98 Identities=11% Similarity=0.072 Sum_probs=60.3
Q ss_pred CCcEEecCcccHHH---HhcccCceeecc---ccch-hhHHHHHHcCCceeecccccccchhHHHHHhh-hc-ceEEecc
Q 048562 320 KRGLIIRGWAPQLL---ILEHTAVGGFMT---HCGW-NSTLESVSAGVPMVTWPITAEQFSNEKLISDV-LK-IGVKVGS 390 (464)
Q Consensus 320 ~~nv~v~~~vpq~~---lL~~~~~~~~It---HGG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~-~G-~G~~l~~ 390 (464)
.++|....++|+.+ +|..+++ +|+ +-|. .++.||+++|+|+|+....+-- ...+.+. .| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 56788889997654 5666776 552 2333 4899999999999998643310 0111000 01 13221
Q ss_pred ccccCCCCCCCCccChHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHH
Q 048562 391 VNWVSWSTEPSAAVGRDKVEVAVKRLMGT-GEEAAEMRRRAGELGEKA 437 (464)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~ai~~il~~-~~~~~~~~~~a~~l~~~~ 437 (464)
-+.++++++|.+++++ ++..+.+.+++++..+++
T Consensus 407 -------------~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~F 441 (463)
T PLN02949 407 -------------TTVEEYADAILEVLRMRETERLEIAAAARKRANRF 441 (463)
T ss_pred -------------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 2688999999999985 344445666666554443
No 100
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.11 E-value=0.0027 Score=65.92 Aligned_cols=84 Identities=10% Similarity=0.009 Sum_probs=52.2
Q ss_pred CCcEEecCcccH---HHHhcccCceeeccc----cchhhHHHHHHcCCceeeccccc--ccchhHHHHHhhhcceEEecc
Q 048562 320 KRGLIIRGWAPQ---LLILEHTAVGGFMTH----CGWNSTLESVSAGVPMVTWPITA--EQFSNEKLISDVLKIGVKVGS 390 (464)
Q Consensus 320 ~~nv~v~~~vpq---~~lL~~~~~~~~ItH----GG~~s~~Eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~ 390 (464)
+.|+.+..-.++ ..++..+++ ++.- |-..+.+||+++|+|+|+....+ |...+.... ...|.|..++.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEeCC
Confidence 456664333333 246677777 5532 22357899999999999865432 322222112 13457888865
Q ss_pred ccccCCCCCCCCccChHHHHHHHHHHhcC
Q 048562 391 VNWVSWSTEPSAAVGRDKVEVAVKRLMGT 419 (464)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~ai~~il~~ 419 (464)
. +.+++.++|.+++++
T Consensus 427 ~-------------~~~~l~~~i~~~l~~ 442 (476)
T cd03791 427 Y-------------NADALLAALRRALAL 442 (476)
T ss_pred C-------------CHHHHHHHHHHHHHH
Confidence 3 789999999998863
No 101
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.11 E-value=1.1e-05 Score=67.42 Aligned_cols=119 Identities=13% Similarity=0.133 Sum_probs=77.2
Q ss_pred EEEEecCCCCCC---CHHhHHHHHHHHhhCCC-ceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcc
Q 048562 254 VLYISFGSLARL---SPEQLLEIAYGLEASNH-SFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWA 329 (464)
Q Consensus 254 ~V~vs~GS~~~~---~~~~~~~~~~al~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~v 329 (464)
.+||+-||.... ..-.-.+..+.+.+.|. +.+...|.. . . +.++.......-..-.+...+|-
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg------~----~---~~~d~~~~~~k~~gl~id~y~f~ 71 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRG------Q----P---FFGDPIDLIRKNGGLTIDGYDFS 71 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCC------c----c---CCCCHHHhhcccCCeEEEEEecC
Confidence 799999999741 11112334556666666 667778775 1 1 12211111101002234456677
Q ss_pred cH-HHHhcccCceeeccccchhhHHHHHHcCCceeeccc----ccccchhHHHHHhhhcceEEe
Q 048562 330 PQ-LLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPI----TAEQFSNEKLISDVLKIGVKV 388 (464)
Q Consensus 330 pq-~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~G~~l 388 (464)
|- .+..+.+++ +|.|+|.||++|.|..|+|.|+++- --.|..-|..++ +.|.=.+-
T Consensus 72 psl~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~~C 132 (170)
T KOG3349|consen 72 PSLTEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLYYC 132 (170)
T ss_pred ccHHHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEEEe
Confidence 74 666666787 9999999999999999999999995 346999999995 88765554
No 102
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.10 E-value=0.0037 Score=62.67 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=59.9
Q ss_pred CCcEEecCcc--cHH---HHhcccCceeecccc----chhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecc
Q 048562 320 KRGLIIRGWA--PQL---LILEHTAVGGFMTHC----GWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGS 390 (464)
Q Consensus 320 ~~nv~v~~~v--pq~---~lL~~~~~~~~ItHG----G~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 390 (464)
..++.+..+. ++. .++..+++ |+... -..++.||+++|+|+|+.... .....+ +.-..|..++
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i-~~~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQI-EDGETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhc-ccCCceEEeC-
Confidence 4567776775 432 45666776 66433 245999999999999987533 233445 3555676552
Q ss_pred ccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 048562 391 VNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGEL 433 (464)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l 433 (464)
+.+.+..+|.+++.|++..+.+.+++++.
T Consensus 323 --------------~~~~~a~~i~~ll~~~~~~~~~~~~a~~~ 351 (372)
T cd03792 323 --------------TVEEAAVRILYLLRDPELRRKMGANAREH 351 (372)
T ss_pred --------------CcHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 34678889999998875445555555553
No 103
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.03 E-value=0.00047 Score=71.68 Aligned_cols=270 Identities=10% Similarity=0.058 Sum_probs=141.0
Q ss_pred hHHHHHHhhhhCCCCEEEe-CCCch--hhHHHHHHcCC--CeEEEeccchHHHHHHHHHHhhCCCCCCCCCCCceecCCC
Q 048562 93 LQEPLKSLLVDSRPDCIVH-DMFHH--WSADVINSMNI--PRIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVVPGL 167 (464)
Q Consensus 93 ~~~~l~~~l~~~~pD~Vi~-D~~~~--~~~~~A~~~gi--P~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 167 (464)
..+++.+.+++.+||+||. |.-.. -.+..+++.|+ |.+.+.+.....+.
T Consensus 298 ~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVWAWR-------------------------- 351 (608)
T PRK01021 298 RYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIWAWR-------------------------- 351 (608)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccceeeC--------------------------
Confidence 3566777777899999988 64322 35556777896 98887544333221
Q ss_pred CCccccChhhhhhhccc-cEEEEcCccccChHHHHHHHhhhCCCCeEEeC-cccccccCcchhhhcCCCCCCCccccccc
Q 048562 168 PDKIELTALSFRFEEKS-FGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVG-PVSLCNRNIEDKAERGQKTSIDEGKILSF 245 (464)
Q Consensus 168 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 245 (464)
+.+ ...+.+. +.++ ....+|.+++. . . +.++.||| |+.-.-+. ....++..+.
T Consensus 352 ~~R-------ikki~k~vD~ll--~IfPFE~~~y~---~-~-gv~v~yVGHPL~d~i~~-----------~~~~~~~r~~ 406 (608)
T PRK01021 352 PKR-------KTILEKYLDLLL--LILPFEQNLFK---D-S-PLRTVYLGHPLVETISS-----------FSPNLSWKEQ 406 (608)
T ss_pred cch-------HHHHHHHhhhhe--ecCccCHHHHH---h-c-CCCeEEECCcHHhhccc-----------CCCHHHHHHH
Confidence 000 1111111 1111 23335555543 2 3 67899999 55322110 0012223333
Q ss_pred cCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHh--hC--CCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCC-
Q 048562 246 LDSKETNSVLYISFGSLARLSPEQLLEIAYGLE--AS--NHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESK- 320 (464)
Q Consensus 246 l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~--~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~- 320 (464)
++-.+++++|-+-.||-.+.-...+-.+++|.+ .. +.+++...... . ..+.+.+...+.+
T Consensus 407 lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~-----------~----~~~~i~~~~~~~~~ 471 (608)
T PRK01021 407 LHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANP-----------K----YDHLILEVLQQEGC 471 (608)
T ss_pred cCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCch-----------h----hHHHHHHHHhhcCC
Confidence 333335679999999986533344555566665 33 33454432211 0 1112222221001
Q ss_pred CcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeec-ccccccchhHHHHHhhh----------cceEEec
Q 048562 321 RGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTW-PITAEQFSNEKLISDVL----------KIGVKVG 389 (464)
Q Consensus 321 ~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~-P~~~DQ~~na~~v~~~~----------G~G~~l~ 389 (464)
-++.+..--...++++.+++ .+.-.|.. +.|+...|+|||++ -...=-+.-++++. +. =+|..+=
T Consensus 472 ~~~~ii~~~~~~~~m~aaD~--aLaaSGTa-TLEaAL~g~PmVV~YK~s~Lty~Iak~Lv-ki~i~yIsLpNIIagr~Vv 547 (608)
T PRK01021 472 LHSHIVPSQFRYELMRECDC--ALAKCGTI-VLETALNQTPTIVTCQLRPFDTFLAKYIF-KIILPAYSLPNIILGSTIF 547 (608)
T ss_pred CCeEEecCcchHHHHHhcCe--eeecCCHH-HHHHHHhCCCEEEEEecCHHHHHHHHHHH-hccCCeeehhHHhcCCCcc
Confidence 12222210013678888887 77777764 56888889999984 22222334455554 31 0122221
Q ss_pred cccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 048562 390 SVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAK 438 (464)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~ 438 (464)
.+ -+++ ..+++++.|.+++ ++|.|+++.+.+++..+++++.+.
T Consensus 548 PE---llqg--Q~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg 590 (608)
T PRK01021 548 PE---FIGG--KKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAMN 590 (608)
T ss_pred hh---hcCC--cccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhc
Confidence 11 0000 0268999999997 888888666677777777777664
No 104
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.01 E-value=0.0016 Score=63.83 Aligned_cols=335 Identities=14% Similarity=0.175 Sum_probs=181.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEeCCcch--hhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCC
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAAHG-AKSTIITSPKHA--LSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTD 81 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~rG-h~Vt~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 81 (464)
|+|+||+++. |++=.+.-+.+|.+++.+.+ .+..++.+.... +..... ++...+..| ++.+.-..
T Consensus 1 m~~~Kv~~I~-GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~----------le~~~i~~p-dy~L~i~~ 68 (383)
T COG0381 1 MKMLKVLTIF-GTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQV----------LELFGIRKP-DYDLNIMK 68 (383)
T ss_pred CCceEEEEEE-ecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHH----------HHHhCCCCC-Ccchhccc
Confidence 4567777664 58999999999999999997 666666554443 222222 111122211 22222222
Q ss_pred CcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCc--h-hhHHHHHHcCCCeEEEeccchHHHHHHHHHHhhCCCCCCCCC
Q 048562 82 MSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFH--H-WSADVINSMNIPRIVFNGNCCFSRCILENVRKYKPHEKVSSD 158 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~--~-~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (464)
....+...+..+...+.+++.+.+||+|++-.=. . +++.+|.+.+||+.=+-.+- .
T Consensus 69 ~~~tl~~~t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGl---------------------R 127 (383)
T COG0381 69 PGQTLGEITGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGL---------------------R 127 (383)
T ss_pred cCCCHHHHHHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEeccc---------------------c
Confidence 2445666677778999999999999999986533 2 56778889999988763220 0
Q ss_pred CCceecCCCCCccccChhhhhhhccccEE-EEcCccccChHHHHHHHhhhCCCCeEEeCcccccccCcchhhhcCCCCCC
Q 048562 159 YEPFVVPGLPDKIELTALSFRFEEKSFGI-VVNSFYDLEPAYVEYFKQDLGNDKAWFVGPVSLCNRNIEDKAERGQKTSI 237 (464)
Q Consensus 159 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~v~~vGp~~~~~~~~~~~~~~~~~~~~ 237 (464)
....+ +|+.++ ++ .......+ ++++ ++... .-.++.....+++.+|-.....-.. .+.. ..
T Consensus 128 t~~~~---~PEE~N--R~---l~~~~S~~hfapt--e~ar~--nLl~EG~~~~~IfvtGnt~iDal~~----~~~~--~~ 189 (383)
T COG0381 128 TGDLY---FPEEIN--RR---LTSHLSDLHFAPT--EIARK--NLLREGVPEKRIFVTGNTVIDALLN----TRDR--VL 189 (383)
T ss_pred cCCCC---CcHHHH--HH---HHHHhhhhhcCCh--HHHHH--HHHHcCCCccceEEeCChHHHHHHH----HHhh--hc
Confidence 01111 222110 00 00000000 1100 11111 1123333234688888533221000 0000 00
Q ss_pred Ccccccc-ccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhh----C-CCceEEEEccCCCCCCCCcCCcccccCCchh
Q 048562 238 DEGKILS-FLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEA----S-NHSFIWVVGKIFQSPGTRKENGIEENWLPSG 311 (464)
Q Consensus 238 ~~~~l~~-~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~----~-~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~ 311 (464)
.+..... +++.. .+..|.+|+=-..+.. +.+..+.+++.+ . +..+|+-+..+ .. +- +
T Consensus 190 ~~~~~~~~~~~~~-~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~----------~~----v~-e 252 (383)
T COG0381 190 EDSKILAKGLDDK-DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPR----------PR----VR-E 252 (383)
T ss_pred cchhhHHhhhccc-cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCC----------hh----hh-H
Confidence 1111111 12222 3448888754333332 445555555443 3 44555444332 11 11 1
Q ss_pred HH-HhhcCCCCcEEe---cCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEE
Q 048562 312 FE-ERMGESKRGLII---RGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVK 387 (464)
Q Consensus 312 ~~-~~~~~~~~nv~v---~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~ 387 (464)
+. ..+. ...++.+ .+|.+...++.++.+ ++|-.|. -.-||-..|+|++++-...+++. ++ +.|.-+.
T Consensus 253 ~~~~~L~-~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v--~agt~~l 323 (383)
T COG0381 253 LVLKRLK-NVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV--EAGTNIL 323 (383)
T ss_pred HHHHHhC-CCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce--ecCceEE
Confidence 11 2222 1335654 456678889989877 8988775 35789999999999999999987 33 4454444
Q ss_pred eccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 048562 388 VGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELG 434 (464)
Q Consensus 388 l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 434 (464)
+ ..+.+.|.+++.++++++ ...+|.+...
T Consensus 324 v--------------g~~~~~i~~~~~~ll~~~----~~~~~m~~~~ 352 (383)
T COG0381 324 V--------------GTDEENILDAATELLEDE----EFYERMSNAK 352 (383)
T ss_pred e--------------CccHHHHHHHHHHHhhCh----HHHHHHhccc
Confidence 4 467799999999999987 5555544433
No 105
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=0.00052 Score=66.98 Aligned_cols=355 Identities=14% Similarity=0.127 Sum_probs=175.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
|+||++++.-..|++. .-.|.++|.+|=-+|.|++-..- .+.+. ++ .++-...++. -..+...+
T Consensus 1 ~~ki~i~AGE~SGDll-Ga~LikaLk~~~~~~efvGvgG~--~m~ae---------G~--~sl~~~~els--vmGf~EVL 64 (381)
T COG0763 1 MLKIALSAGEASGDLL-GAGLIKALKARYPDVEFVGVGGE--KMEAE---------GL--ESLFDMEELS--VMGFVEVL 64 (381)
T ss_pred CceEEEEecccchhhH-HHHHHHHHHhhCCCeEEEEeccH--HHHhc---------cC--ccccCHHHHH--HhhHHHHH
Confidence 4688888888888865 45678888887227777765422 23333 22 1110000000 00111111
Q ss_pred HHHH--hhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHH---HcC--CCeEEEeccchHHHHHHHHHHhhCCCCCCCCCC
Q 048562 87 RTDT--SMLQEPLKSLLVDSRPDCIVHDMFHHWSADVIN---SMN--IPRIVFNGNCCFSRCILENVRKYKPHEKVSSDY 159 (464)
Q Consensus 87 ~~~~--~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~---~~g--iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (464)
.... -...+++.+.+...+||++|.=..--+...+++ +.| +|.|-+...+...|...
T Consensus 65 ~~lp~llk~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVWAWr~~---------------- 128 (381)
T COG0763 65 GRLPRLLKIRRELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWAWRPK---------------- 128 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcceeeechh----------------
Confidence 1111 112455555666789999886444434444554 456 88887754433322100
Q ss_pred CceecCCCCCccccChhhhhhhccccEEEEcCccccChHHHHHHHhhhCCCCeEEeC-cccccccCcchhhhcCCCCCCC
Q 048562 160 EPFVVPGLPDKIELTALSFRFEEKSFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVG-PVSLCNRNIEDKAERGQKTSID 238 (464)
Q Consensus 160 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vG-p~~~~~~~~~~~~~~~~~~~~~ 238 (464)
|...-....+-++ .+.-+|+++++. + +-+..||| |+.-..+. ..+
T Consensus 129 ----------------Ra~~i~~~~D~lL--ailPFE~~~y~k----~-g~~~~yVGHpl~d~i~~-----------~~~ 174 (381)
T COG0763 129 ----------------RAVKIAKYVDHLL--AILPFEPAFYDK----F-GLPCTYVGHPLADEIPL-----------LPD 174 (381)
T ss_pred ----------------hHHHHHHHhhHee--eecCCCHHHHHh----c-CCCeEEeCChhhhhccc-----------ccc
Confidence 0000011111111 233355665432 2 33488999 44322110 002
Q ss_pred ccccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhh-----CCCceEEEEccCCCCCCCCcCCcccccCCchhHH
Q 048562 239 EGKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEA-----SNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFE 313 (464)
Q Consensus 239 ~~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~ 313 (464)
.+...+-+....+++++.+-.||-.+.-...+..+.++... .+.+|+.-+... .... + ..
T Consensus 175 r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~-----------~~~~-~---~~ 239 (381)
T COG0763 175 REAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNA-----------KYRR-I---IE 239 (381)
T ss_pred HHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcH-----------HHHH-H---HH
Confidence 23333334333456699999999875222223333333333 255766665432 1000 1 01
Q ss_pred HhhcCCCCcEEecCcc-c--HHHHhcccCceeeccccchhhHHHHHHcCCceeecc-cccccchhHHHHHhhhc------
Q 048562 314 ERMGESKRGLIIRGWA-P--QLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWP-ITAEQFSNEKLISDVLK------ 383 (464)
Q Consensus 314 ~~~~~~~~nv~v~~~v-p--q~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G------ 383 (464)
+... .......-++ + -.+++..+++ .+.-+|.. +.|+..+|+|||+.= ...=-+.-+++.. ...
T Consensus 240 ~~~~--~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it~~iak~lv-k~~yisLpN 313 (381)
T COG0763 240 EALK--WEVAGLSLILIDGEKRKAFAAADA--ALAASGTA-TLEAALAGTPMVVAYKVKPITYFIAKRLV-KLPYVSLPN 313 (381)
T ss_pred HHhh--ccccCceEEecCchHHHHHHHhhH--HHHhccHH-HHHHHHhCCCEEEEEeccHHHHHHHHHhc-cCCcccchH
Confidence 1110 1110011122 2 2335666666 66666665 568888899999851 1111122233332 222
Q ss_pred --ceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048562 384 --IGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALLQELK 459 (464)
Q Consensus 384 --~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~~~ 459 (464)
+|..+-.+ -....++++.|.+++..++.|+++.+.+++...++++.++ .+++++..++.+++.+.
T Consensus 314 Ii~~~~ivPE-------liq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 314 ILAGREIVPE-------LIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLELLL 380 (381)
T ss_pred HhcCCccchH-------HHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhc
Confidence 12111110 0012688999999999999998666678888888888877 55566666667776653
No 106
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.97 E-value=0.011 Score=61.30 Aligned_cols=130 Identities=9% Similarity=-0.021 Sum_probs=73.7
Q ss_pred cEEEEecCCCCCCCHHhHHHHHHHHhh---CCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcc
Q 048562 253 SVLYISFGSLARLSPEQLLEIAYGLEA---SNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWA 329 (464)
Q Consensus 253 ~~V~vs~GS~~~~~~~~~~~~~~al~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~v 329 (464)
..+++..|.+.. .+.+..+++++.. .+.++++.-.+. .. +.+.+.+...+.+.++.+....
T Consensus 291 ~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~----------~~----~~~~l~~~~~~~~~~v~~~~~~ 354 (473)
T TIGR02095 291 VPLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVLGTGD----------PE----LEEALRELAERYPGNVRVIIGY 354 (473)
T ss_pred CCEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEECCCC----------HH----HHHHHHHHHHHCCCcEEEEEcC
Confidence 356666777763 2234444444443 345555443221 01 2222322222235566665445
Q ss_pred cHH---HHhcccCceeeccc---cch-hhHHHHHHcCCceeecccccccchhHHHHHhhh------cceEEeccccccCC
Q 048562 330 PQL---LILEHTAVGGFMTH---CGW-NSTLESVSAGVPMVTWPITAEQFSNEKLISDVL------KIGVKVGSVNWVSW 396 (464)
Q Consensus 330 pq~---~lL~~~~~~~~ItH---GG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~------G~G~~l~~~~~~~~ 396 (464)
+.. .+++.+++ ++.- -|. .+.+||+++|+|+|+....+ ....+ +.- +.|..++.
T Consensus 355 ~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~~~------ 421 (473)
T TIGR02095 355 DEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLFEE------ 421 (473)
T ss_pred CHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEeCC------
Confidence 543 46777777 5532 233 48899999999999865432 22222 232 67888855
Q ss_pred CCCCCCccChHHHHHHHHHHhc
Q 048562 397 STEPSAAVGRDKVEVAVKRLMG 418 (464)
Q Consensus 397 ~~~~~~~~~~~~l~~ai~~il~ 418 (464)
-+++++.++|.+++.
T Consensus 422 -------~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 422 -------YDPGALLAALSRALR 436 (473)
T ss_pred -------CCHHHHHHHHHHHHH
Confidence 478899999999987
No 107
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.94 E-value=8.6e-05 Score=75.24 Aligned_cols=153 Identities=24% Similarity=0.267 Sum_probs=86.0
Q ss_pred CCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHH-hhcCCCCcEEecCcc
Q 048562 251 TNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEE-RMGESKRGLIIRGWA 329 (464)
Q Consensus 251 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~~~~~nv~v~~~v 329 (464)
++.++|+||.+..+.+++.+....+.|++.+...+|..... ......+-..+.+ .+. ++.+.+.++.
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~----------~~~~~~l~~~~~~~Gv~--~~Ri~f~~~~ 350 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFP----------ASGEARLRRRFAAHGVD--PDRIIFSPVA 350 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETS----------TTHHHHHHHHHHHTTS---GGGEEEEE--
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCC----------HHHHHHHHHHHHHcCCC--hhhEEEcCCC
Confidence 45699999999999999999999999999999999988654 1111112112221 122 5567777776
Q ss_pred cHHHHh---cccCcee-eccccchhhHHHHHHcCCceeeccc-ccccchhHHHHHhhhcceEEeccccccCCCCCCCCcc
Q 048562 330 PQLLIL---EHTAVGG-FMTHCGWNSTLESVSAGVPMVTWPI-TAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAV 404 (464)
Q Consensus 330 pq~~lL---~~~~~~~-~ItHGG~~s~~Eal~~GvP~v~~P~-~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~ 404 (464)
++.+-| ...++-+ -...+|.+|++|||+.|||+|.+|- ..=...-+..+ ..+|+...+ ..
T Consensus 351 ~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElI--------------A~ 415 (468)
T PF13844_consen 351 PREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELI--------------AD 415 (468)
T ss_dssp -HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB---------------S
T ss_pred CHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhc--------------CC
Confidence 654433 4455522 2356888999999999999999994 33445556677 588888655 34
Q ss_pred ChHHHHHHHHHHhcCChHHHHHHHHH
Q 048562 405 GRDKVEVAVKRLMGTGEEAAEMRRRA 430 (464)
Q Consensus 405 ~~~~l~~ai~~il~~~~~~~~~~~~a 430 (464)
+.++-.+.--++-.|.++...+|++.
T Consensus 416 s~~eYv~~Av~La~D~~~l~~lR~~L 441 (468)
T PF13844_consen 416 SEEEYVEIAVRLATDPERLRALRAKL 441 (468)
T ss_dssp SHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55665555555666764333344333
No 108
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.87 E-value=0.0034 Score=62.77 Aligned_cols=102 Identities=14% Similarity=0.190 Sum_probs=73.8
Q ss_pred CCcEEecCcccH-HHHhcccCceeeccc--cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCC
Q 048562 320 KRGLIIRGWAPQ-LLILEHTAVGGFMTH--CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSW 396 (464)
Q Consensus 320 ~~nv~v~~~vpq-~~lL~~~~~~~~ItH--GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 396 (464)
+.++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+ +.-..|..++.
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~~------ 329 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVPK------ 329 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeCC------
Confidence 457777777654 557888888555554 33569999999999999864321 234445 35667888865
Q ss_pred CCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 048562 397 STEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAK 438 (464)
Q Consensus 397 ~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~ 438 (464)
-+.+++.++|..++.|++..+.+.+++.+..+++.
T Consensus 330 -------~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s 364 (372)
T cd04949 330 -------GDIEALAEAIIELLNDPKLLQKFSEAAYENAERYS 364 (372)
T ss_pred -------CcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 38899999999999998777777788777766554
No 109
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.77 E-value=0.00013 Score=64.47 Aligned_cols=147 Identities=16% Similarity=0.234 Sum_probs=91.0
Q ss_pred CCcEEEEecCCCCCCCHHhHHHHHHHHhh-----CCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEe
Q 048562 251 TNSVLYISFGSLARLSPEQLLEIAYGLEA-----SNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLII 325 (464)
Q Consensus 251 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v 325 (464)
.++.+++..|.... ...+..+++++.. .+.-.++.+|.. .. ...+- ...+.. ....++.+
T Consensus 13 ~~~~~il~~g~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~~----------~~-~~~~~-~~~~~~-~~~~~i~~ 77 (172)
T PF00534_consen 13 DKKKIILFIGRLDP--EKGIDLLIEAFKKLKEKKNPNYKLVIVGDG----------EY-KKELK-NLIEKL-NLKENIIF 77 (172)
T ss_dssp TTSEEEEEESESSG--GGTHHHHHHHHHHHHHHHHTTEEEEEESHC----------CH-HHHHH-HHHHHT-TCGTTEEE
T ss_pred CCCeEEEEEecCcc--ccCHHHHHHHHHHHHhhcCCCeEEEEEccc----------cc-ccccc-cccccc-cccccccc
Confidence 44577777888763 3445555555553 233334444422 00 00011 111111 12568888
Q ss_pred cCccc---HHHHhcccCceeeccc----cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCC
Q 048562 326 RGWAP---QLLILEHTAVGGFMTH----CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWST 398 (464)
Q Consensus 326 ~~~vp---q~~lL~~~~~~~~ItH----GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~ 398 (464)
..+++ ...++..+++ +|+. |...++.||+.+|+|+|+. |...+...+ ...+.|..++.
T Consensus 78 ~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~~-------- 142 (172)
T PF00534_consen 78 LGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFDP-------- 142 (172)
T ss_dssp EESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEEST--------
T ss_pred ccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeCC--------
Confidence 89987 3557777777 6655 5677999999999999974 456666667 57777988865
Q ss_pred CCCCccChHHHHHHHHHHhcCChHHHHHHHHHHH
Q 048562 399 EPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGE 432 (464)
Q Consensus 399 ~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~ 432 (464)
-+.+++.++|.++++|+++.+.+.+++++
T Consensus 143 -----~~~~~l~~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 143 -----NDIEELADAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp -----TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 39999999999999987555555555544
No 110
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.61 E-value=0.016 Score=60.56 Aligned_cols=153 Identities=10% Similarity=0.133 Sum_probs=91.3
Q ss_pred cEEEEecCCCCCCCHHhHHHHHHHHhh----CCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcC--CCCcEEec
Q 048562 253 SVLYISFGSLARLSPEQLLEIAYGLEA----SNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGE--SKRGLIIR 326 (464)
Q Consensus 253 ~~V~vs~GS~~~~~~~~~~~~~~al~~----~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~--~~~nv~v~ 326 (464)
+.++++.|.+. +...+..+++|+.. .+.--+..+|.. . ..+.+.+.+.+ ..++|...
T Consensus 319 ~~~il~vGrl~--~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G-----------~----~~~~l~~~i~~~~l~~~V~f~ 381 (500)
T TIGR02918 319 PFSIITASRLA--KEKHIDWLVKAVVKAKKSVPELTFDIYGEG-----------G----EKQKLQKIINENQAQDYIHLK 381 (500)
T ss_pred CeEEEEEeccc--cccCHHHHHHHHHHHHhhCCCeEEEEEECc-----------h----hHHHHHHHHHHcCCCCeEEEc
Confidence 35666777776 34445566666643 222223334543 1 11223222221 14568888
Q ss_pred CcccHHHHhcccCceeecc---ccc-hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCC
Q 048562 327 GWAPQLLILEHTAVGGFMT---HCG-WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSA 402 (464)
Q Consensus 327 ~~vpq~~lL~~~~~~~~It---HGG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~ 402 (464)
++.+..+++..+++ +|. .-| ..++.||+++|+|+|+.... ..+...+ +.-.-|..++..+ .
T Consensus 382 G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI-~~g~nG~lv~~~~---------~ 446 (500)
T TIGR02918 382 GHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFI-EDNKNGYLIPIDE---------E 446 (500)
T ss_pred CCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHc-cCCCCEEEEeCCc---------c
Confidence 88888889988888 553 234 46999999999999997542 1234445 3444677775310 0
Q ss_pred ccC----hHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 048562 403 AVG----RDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAK 438 (464)
Q Consensus 403 ~~~----~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~ 438 (464)
.-+ .+.++++|.++++ ++....|.+++.+.++.+.
T Consensus 447 ~~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 447 EDDEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIAEGFL 485 (500)
T ss_pred ccchhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHhcC
Confidence 112 7789999999995 4455567777777665544
No 111
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.60 E-value=0.0018 Score=65.94 Aligned_cols=95 Identities=20% Similarity=0.275 Sum_probs=68.4
Q ss_pred CCcEEecCcccHHH---HhcccCceeecc--c-------cch-hhHHHHHHcCCceeecccccccchhHHHHHhhhcceE
Q 048562 320 KRGLIIRGWAPQLL---ILEHTAVGGFMT--H-------CGW-NSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGV 386 (464)
Q Consensus 320 ~~nv~v~~~vpq~~---lL~~~~~~~~It--H-------GG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 386 (464)
.+++.+.+|+|+.+ ++..+++ ||. + -|. ++++||+.+|+|+|+.... .....+ +.-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceE
Confidence 46799999998765 5666777 543 2 344 6799999999999997543 234445 3555788
Q ss_pred EeccccccCCCCCCCCccChHHHHHHHHHHhc-CChHHHHHHHHHHHHH
Q 048562 387 KVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMG-TGEEAAEMRRRAGELG 434 (464)
Q Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~-~~~~~~~~~~~a~~l~ 434 (464)
.++.. +.+++.++|.++++ |++..+.+.+++++..
T Consensus 351 lv~~~-------------d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v 386 (406)
T PRK15427 351 LVPEN-------------DAQALAQRLAAFSQLDTDELAPVVKRAREKV 386 (406)
T ss_pred EeCCC-------------CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 88653 78999999999999 8765566666665543
No 112
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.59 E-value=0.00078 Score=68.55 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=68.2
Q ss_pred CCcEEecCcccHHHH---hcccCceeeccccc----hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecccc
Q 048562 320 KRGLIIRGWAPQLLI---LEHTAVGGFMTHCG----WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVN 392 (464)
Q Consensus 320 ~~nv~v~~~vpq~~l---L~~~~~~~~ItHGG----~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 392 (464)
..+|...+|+++.++ +..+++.+||...- -++++||+++|+|+|+... ......+ +..+.|..+..
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i-~~~~~G~l~~~-- 360 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIV-DNGGNGLLLSK-- 360 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHh-cCCCcEEEeCC--
Confidence 346888999997654 44444444665442 4689999999999998643 3355566 45558887754
Q ss_pred ccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 048562 393 WVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELG 434 (464)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 434 (464)
.-+.+++.++|.++++|++..+.+++++++.-
T Consensus 361 ----------~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~ 392 (407)
T cd04946 361 ----------DPTPNELVSSLSKFIDNEEEYQTMREKAREKW 392 (407)
T ss_pred ----------CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 25789999999999998765555666655543
No 113
>PLN02316 synthase/transferase
Probab=97.57 E-value=0.19 Score=56.23 Aligned_cols=106 Identities=11% Similarity=0.024 Sum_probs=62.3
Q ss_pred CCcEEecCcccHH---HHhcccCceeeccc----cchhhHHHHHHcCCceeeccccc--ccchhH----HHH--Hhhhcc
Q 048562 320 KRGLIIRGWAPQL---LILEHTAVGGFMTH----CGWNSTLESVSAGVPMVTWPITA--EQFSNE----KLI--SDVLKI 384 (464)
Q Consensus 320 ~~nv~v~~~vpq~---~lL~~~~~~~~ItH----GG~~s~~Eal~~GvP~v~~P~~~--DQ~~na----~~v--~~~~G~ 384 (464)
+.++.+....+.. .+++.+++ |+.- +=..+.+||+++|+|.|+....+ |..... .+. ...-+-
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 4456554444432 56777776 7643 22468999999999988865432 222111 000 001246
Q ss_pred eEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCC
Q 048562 385 GVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGS 446 (464)
Q Consensus 385 G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~ 446 (464)
|..++. .+++.|..+|.+++.+ |.+....+++..+++++..-+
T Consensus 977 Gflf~~-------------~d~~aLa~AL~raL~~------~~~~~~~~~~~~r~~m~~dFS 1019 (1036)
T PLN02316 977 GFSFDG-------------ADAAGVDYALNRAISA------WYDGRDWFNSLCKRVMEQDWS 1019 (1036)
T ss_pred eEEeCC-------------CCHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHHhhCC
Confidence 777754 4889999999999974 444444455555555544443
No 114
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.50 E-value=0.0029 Score=62.89 Aligned_cols=282 Identities=16% Similarity=0.140 Sum_probs=140.0
Q ss_pred hHHHHHHhhhhCCCCEEEeCCCch---hhHHHHHHcCCC--eEEEeccchHHHHHHHHHHhhCCCCCCCCCCCceecCCC
Q 048562 93 LQEPLKSLLVDSRPDCIVHDMFHH---WSADVINSMNIP--RIVFNGNCCFSRCILENVRKYKPHEKVSSDYEPFVVPGL 167 (464)
Q Consensus 93 ~~~~l~~~l~~~~pD~Vi~D~~~~---~~~~~A~~~giP--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 167 (464)
....+.+.+++.+||+||.=.+-. -.+-.++..|+| .+.+.+.....|.
T Consensus 70 ~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~PqvWAWr-------------------------- 123 (373)
T PF02684_consen 70 LFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQVWAWR-------------------------- 123 (373)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCceeeeC--------------------------
Confidence 356777778889999987543433 344455577888 6666433222220
Q ss_pred CCccccChhhhhhhcc-ccEEEEcCccccChHHHHHHHhhhCCCCeEEeC-cccccccCcchhhhcCCCCCCCccccccc
Q 048562 168 PDKIELTALSFRFEEK-SFGIVVNSFYDLEPAYVEYFKQDLGNDKAWFVG-PVSLCNRNIEDKAERGQKTSIDEGKILSF 245 (464)
Q Consensus 168 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vG-p~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 245 (464)
.+| ...+.+ .+.++ .+..+|.+++. . . +.++.||| |+.-.... ........+.
T Consensus 124 ------~~R-~~~i~~~~D~ll--~ifPFE~~~y~---~-~-g~~~~~VGHPl~d~~~~-----------~~~~~~~~~~ 178 (373)
T PF02684_consen 124 ------PGR-AKKIKKYVDHLL--VIFPFEPEFYK---K-H-GVPVTYVGHPLLDEVKP-----------EPDRAEAREK 178 (373)
T ss_pred ------ccH-HHHHHHHHhhee--ECCcccHHHHh---c-c-CCCeEEECCcchhhhcc-----------CCCHHHHHHh
Confidence 000 111111 12222 13334555442 2 3 56789999 54322111 0011222233
Q ss_pred cCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhh-----CCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCC
Q 048562 246 LDSKETNSVLYISFGSLARLSPEQLLEIAYGLEA-----SNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESK 320 (464)
Q Consensus 246 l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~ 320 (464)
+ -.+++++|-+-.||--+.-...+-.++++.+. .+.++++..... . ..+.+.+......
T Consensus 179 ~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~-----------~----~~~~i~~~~~~~~ 242 (373)
T PF02684_consen 179 L-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPE-----------V----HEELIEEILAEYP 242 (373)
T ss_pred c-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCH-----------H----HHHHHHHHHHhhC
Confidence 2 22356799999999865223333444555433 244555544322 1 1111111111113
Q ss_pred CcEEecCc-ccHHHHhcccCceeeccccchhhHHHHHHcCCceeecc-cccccchhHHHHHhhhcc-eEEeccccccCCC
Q 048562 321 RGLIIRGW-APQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWP-ITAEQFSNEKLISDVLKI-GVKVGSVNWVSWS 397 (464)
Q Consensus 321 ~nv~v~~~-vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~-G~~l~~~~~~~~~ 397 (464)
.++.+.-. -...+++..+++ .+.-.|. .+.|+...|+|||++= ...=.+..|++++ .... |+.=-..+.--..
T Consensus 243 ~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lv-k~~~isL~Niia~~~v~P 318 (373)
T PF02684_consen 243 PDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLV-KVKYISLPNIIAGREVVP 318 (373)
T ss_pred CCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhh-cCCEeechhhhcCCCcch
Confidence 33333211 246678888887 6666665 4678888999998852 3333444555554 3331 1100000000000
Q ss_pred CCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 048562 398 TEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFI 449 (464)
Q Consensus 398 ~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~ 449 (464)
|---..++++.|.+++..++.|++ .++......+.+++..+.|.++.+
T Consensus 319 EliQ~~~~~~~i~~~~~~ll~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 319 ELIQEDATPENIAAELLELLENPE----KRKKQKELFREIRQLLGPGASSRA 366 (373)
T ss_pred hhhcccCCHHHHHHHHHHHhcCHH----HHHHHHHHHHHHHHhhhhccCCHH
Confidence 000236899999999999999984 344444444444444446666665
No 115
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.35 E-value=0.0083 Score=60.45 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=59.4
Q ss_pred CCcEEecCcccHHH---HhcccCceeeccc----cch-hhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccc
Q 048562 320 KRGLIIRGWAPQLL---ILEHTAVGGFMTH----CGW-NSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSV 391 (464)
Q Consensus 320 ~~nv~v~~~vpq~~---lL~~~~~~~~ItH----GG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 391 (464)
..++...+++|+.+ ++..+++ +|.. .|. .++.||+++|+|+|+.... .+...+ +.-..|..+..
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv-~~~~~G~~l~~- 327 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFV-LEGITGYHLAE- 327 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhc-ccCCceEEEeC-
Confidence 56788889998544 5777887 5532 343 6789999999999997653 344455 35556875532
Q ss_pred cccCCCCCCCCccChHHHHHHHHHHhcCCh
Q 048562 392 NWVSWSTEPSAAVGRDKVEVAVKRLMGTGE 421 (464)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~ai~~il~~~~ 421 (464)
..+.+++.++|.++++|++
T Consensus 328 -----------~~d~~~la~~I~~ll~d~~ 346 (380)
T PRK15484 328 -----------PMTSDSIISDINRTLADPE 346 (380)
T ss_pred -----------CCCHHHHHHHHHHHHcCHH
Confidence 2488999999999999873
No 116
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.0019 Score=53.20 Aligned_cols=108 Identities=18% Similarity=0.235 Sum_probs=71.0
Q ss_pred EEEecCCCCCCCHHh--HHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcc--c
Q 048562 255 LYISFGSLARLSPEQ--LLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWA--P 330 (464)
Q Consensus 255 V~vs~GS~~~~~~~~--~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~v--p 330 (464)
+||+-||....-... -.++.+-.+....++|..+|.. +. .|- .++++.+|. +
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~----------d~----kpv----------agl~v~~F~~~~ 57 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNG----------DI----KPV----------AGLRVYGFDKEE 57 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCC----------Cc----ccc----------cccEEEeechHH
Confidence 789999985311111 1123333333455889999876 11 321 224555554 4
Q ss_pred -HHHHhcccCceeeccccchhhHHHHHHcCCceeeccccc--------ccchhHHHHHhhhcceEEec
Q 048562 331 -QLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITA--------EQFSNEKLISDVLKIGVKVG 389 (464)
Q Consensus 331 -q~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~--------DQ~~na~~v~~~~G~G~~l~ 389 (464)
.+.+...+++ +|+|+|.||+..++.-++|.|++|-.. .|..-|..++ +.+.=....
T Consensus 58 kiQsli~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~s 122 (161)
T COG5017 58 KIQSLIHDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACS 122 (161)
T ss_pred HHHHHhhcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEc
Confidence 4566666666 999999999999999999999999633 4777788886 777665554
No 117
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.23 E-value=0.0053 Score=51.98 Aligned_cols=103 Identities=14% Similarity=0.160 Sum_probs=67.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHH
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRT 88 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (464)
|||+++.....| ...+++.|.++||+|++++.....+..... .++.+..++.+ ... ...
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~--------~~i~~~~~~~~---------~k~-~~~ 59 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEII--------EGIKVIRLPSP---------RKS-PLN 59 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHh--------CCeEEEEecCC---------CCc-cHH
Confidence 577777766555 567899999999999999995543222221 36777776421 111 111
Q ss_pred HHhhhHHHHHHhhhhCCCCEEEeCCCch---hhHHHHHHcC-CCeEEEec
Q 048562 89 DTSMLQEPLKSLLVDSRPDCIVHDMFHH---WSADVINSMN-IPRIVFNG 134 (464)
Q Consensus 89 ~~~~~~~~l~~~l~~~~pD~Vi~D~~~~---~~~~~A~~~g-iP~v~~~~ 134 (464)
... .. .+.+++++.+||+|.+-.... .+..+++..+ +|+|....
T Consensus 60 ~~~-~~-~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 60 YIK-YF-RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHH-HH-HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 222 23 788999999999998776553 2444667788 89986543
No 118
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.22 E-value=0.28 Score=49.15 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=52.5
Q ss_pred CCcEEecCcccHHH---HhcccCceeec------cccch-hhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEec
Q 048562 320 KRGLIIRGWAPQLL---ILEHTAVGGFM------THCGW-NSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVG 389 (464)
Q Consensus 320 ~~nv~v~~~vpq~~---lL~~~~~~~~I------tHGG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 389 (464)
.+||...+++|..+ .+.++++.++- +.++. +.+.|++++|+|+|..++ ...+ +..+ |..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~-~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYED-EVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcC-cEEEe
Confidence 47999999998555 56678874332 22333 469999999999998753 1222 2333 33332
Q ss_pred cccccCCCCCCCCccChHHHHHHHHHHhcCC
Q 048562 390 SVNWVSWSTEPSAAVGRDKVEVAVKRLMGTG 420 (464)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~ 420 (464)
. -+.+++.++|.+++.+.
T Consensus 324 ~-------------~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 324 A-------------DDPEEFVAAIEKALLED 341 (373)
T ss_pred C-------------CCHHHHHHHHHHHHhcC
Confidence 2 37899999999987654
No 119
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.20 E-value=0.18 Score=51.30 Aligned_cols=114 Identities=12% Similarity=0.077 Sum_probs=65.4
Q ss_pred EEEecCCCCCCCHHhHHHHHHHHhhCCCce-EEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcc-cH-
Q 048562 255 LYISFGSLARLSPEQLLEIAYGLEASNHSF-IWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWA-PQ- 331 (464)
Q Consensus 255 V~vs~GS~~~~~~~~~~~~~~al~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~v-pq- 331 (464)
+++..|.........+..+++|+..++..+ ++.+|.. .. . . ..++....+. ++
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g----------~~-~--~-----------~~~v~~~g~~~~~~ 298 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKF----------SP-F--T-----------AGNVVNHGFETDKR 298 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCC----------Cc-c--c-----------ccceEEecCcCCHH
Confidence 344445433223344677888888765443 3444433 00 0 1 2345555555 33
Q ss_pred --HHHhcccCceeeccc----cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccC
Q 048562 332 --LLILEHTAVGGFMTH----CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVG 405 (464)
Q Consensus 332 --~~lL~~~~~~~~ItH----GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~ 405 (464)
.+++..+++ ||.- |--+++.||+++|+|+|+....+ ....+ ..+-|..++.. +
T Consensus 299 ~l~~~y~~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv--~~~~G~lv~~~-------------d 357 (405)
T PRK10125 299 KLMSALNQMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL--QKSGGKTVSEE-------------E 357 (405)
T ss_pred HHHHHHHhCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE--eCCcEEEECCC-------------C
Confidence 334555666 6543 33468999999999999987654 22233 23568888664 6
Q ss_pred hHHHHHHH
Q 048562 406 RDKVEVAV 413 (464)
Q Consensus 406 ~~~l~~ai 413 (464)
.+.|++++
T Consensus 358 ~~~La~~~ 365 (405)
T PRK10125 358 VLQLAQLS 365 (405)
T ss_pred HHHHHhcc
Confidence 77777654
No 120
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.14 E-value=0.14 Score=46.30 Aligned_cols=68 Identities=21% Similarity=0.364 Sum_probs=51.6
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHH
Q 048562 17 GGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEP 96 (464)
Q Consensus 17 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (464)
..|+-.....+++.|.++||+|++++ .....
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~-------------------------------------------------~~~~~ 42 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA-------------------------------------------------LLLLL 42 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE-------------------------------------------------echHH
Confidence 67999999999999999999999988 11222
Q ss_pred HHHhhhhCCCCEEEeCCCchhhH---HHHHHcCCCeEEEe
Q 048562 97 LKSLLVDSRPDCIVHDMFHHWSA---DVINSMNIPRIVFN 133 (464)
Q Consensus 97 l~~~l~~~~pD~Vi~D~~~~~~~---~~A~~~giP~v~~~ 133 (464)
+...+++.+||+|++........ ..+...++|++...
T Consensus 43 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~i~~~ 82 (229)
T cd01635 43 LLRILRGFKPDVVHAHGYYPAPLALLLAARLLGIPLVLTV 82 (229)
T ss_pred HHHHHhhcCCCEEEEcCCCcHHHHHHHHHhhCCCCEEEEE
Confidence 33444578999999987765333 35677889988763
No 121
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.07 E-value=0.18 Score=53.75 Aligned_cols=76 Identities=13% Similarity=0.002 Sum_probs=51.2
Q ss_pred cEEecCcccHH-HHhcccCceeeccc---cc-hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCC
Q 048562 322 GLIIRGWAPQL-LILEHTAVGGFMTH---CG-WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSW 396 (464)
Q Consensus 322 nv~v~~~vpq~-~lL~~~~~~~~ItH---GG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 396 (464)
++...++.+.. ++++.+++ ||.- =| .+++.||+++|+|+|+....+.. . + .. |.+-.+
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e----~-V-~~-g~nGll-------- 664 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNE----F-F-RS-FPNCLT-------- 664 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCc----e-E-ee-cCCeEe--------
Confidence 45556666644 58888887 6653 23 47899999999999998665422 1 3 12 222222
Q ss_pred CCCCCCccChHHHHHHHHHHhcCC
Q 048562 397 STEPSAAVGRDKVEVAVKRLMGTG 420 (464)
Q Consensus 397 ~~~~~~~~~~~~l~~ai~~il~~~ 420 (464)
.-+.+++.++|.++|+|+
T Consensus 665 ------~~D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 665 ------YKTSEDFVAKVKEALANE 682 (794)
T ss_pred ------cCCHHHHHHHHHHHHhCc
Confidence 136899999999999986
No 122
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.06 E-value=0.025 Score=58.79 Aligned_cols=95 Identities=20% Similarity=0.184 Sum_probs=68.0
Q ss_pred CCcEEecCcccHHHHhcccCceeeccc----cchhhHHHHHHcCCceeecccccccchhHHHHHhhh------cceEEec
Q 048562 320 KRGLIIRGWAPQLLILEHTAVGGFMTH----CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVL------KIGVKVG 389 (464)
Q Consensus 320 ~~nv~v~~~vpq~~lL~~~~~~~~ItH----GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~------G~G~~l~ 389 (464)
.++|...+...-.+++..+++ +|.- |--+++.||+++|+|+|+- |.......+ +.. ..|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEEC
Confidence 468888886667778888887 4432 3347999999999999995 444445555 352 2687776
Q ss_pred cccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 048562 390 SVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELG 434 (464)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 434 (464)
. -+.+++.++|.++++|++..+.+.+++++..
T Consensus 426 ~-------------~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v 457 (475)
T cd03813 426 P-------------ADPEALARAILRLLKDPELRRAMGEAGRKRV 457 (475)
T ss_pred C-------------CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 5 4889999999999999865556666665433
No 123
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.93 E-value=0.0038 Score=52.53 Aligned_cols=80 Identities=24% Similarity=0.339 Sum_probs=50.4
Q ss_pred CCcEEecCccc-HHHHhcccCceeeccc--cc-hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccC
Q 048562 320 KRGLIIRGWAP-QLLILEHTAVGGFMTH--CG-WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVS 395 (464)
Q Consensus 320 ~~nv~v~~~vp-q~~lL~~~~~~~~ItH--GG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 395 (464)
.+|+...+|++ ..+++..+++.+..+. .| .+++.|++.+|+|+|+.+. .....+ +..+.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~-~~~~~~~~~-~----- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIV-EEDGCGVLV-A----- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE--T-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhhe-eecCCeEEE-C-----
Confidence 45899999986 3557888888665442 23 4899999999999999876 122234 357788777 3
Q ss_pred CCCCCCCccChHHHHHHHHHHhcC
Q 048562 396 WSTEPSAAVGRDKVEVAVKRLMGT 419 (464)
Q Consensus 396 ~~~~~~~~~~~~~l~~ai~~il~~ 419 (464)
-+++++.++|.++++|
T Consensus 120 --------~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 --------NDPEELAEAIERLLND 135 (135)
T ss_dssp --------T-HHHHHHHHHHHHH-
T ss_pred --------CCHHHHHHHHHHHhcC
Confidence 3899999999999875
No 124
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.67 E-value=0.0044 Score=53.16 Aligned_cols=95 Identities=22% Similarity=0.227 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHHHHHhh
Q 048562 22 IPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEPLKSLL 101 (464)
Q Consensus 22 ~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 101 (464)
.-+..|+++|.++||+|++++.......-... ..++.+..++.+.... .+. . ......+.+++
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~--------~~~-~-~~~~~~~~~~l 67 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEEE-------EDGVRVHRLPLPRRPW--------PLR-L-LRFLRRLRRLL 67 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SEE-------ETTEEEEEE--S-SSS--------GGG-H-CCHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccccc-------cCCceEEeccCCccch--------hhh-h-HHHHHHHHHHH
Confidence 34678999999999999999976554322111 1357777766431110 000 0 11235566777
Q ss_pred --hhCCCCEEEeCCCch-hhHHHHH-HcCCCeEEEe
Q 048562 102 --VDSRPDCIVHDMFHH-WSADVIN-SMNIPRIVFN 133 (464)
Q Consensus 102 --~~~~pD~Vi~D~~~~-~~~~~A~-~~giP~v~~~ 133 (464)
++.+||+|.+..... ....+++ ..++|+|...
T Consensus 68 ~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 68 AARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred hhhccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 789999999987443 3334444 7899999874
No 125
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.62 E-value=0.2 Score=49.00 Aligned_cols=107 Identities=15% Similarity=0.030 Sum_probs=68.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCcEEEEeCCcchhhhhhhhhhccCCCCCeE-EEEecCCCCCCCCCCCCccc
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAH--GAKSTIITSPKHALSFQKSINRNQQSGLPIT-IKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~ 85 (464)
|||++-....|++.-+.++.++|+++ +.+|++++.+.+.+.++.. +.+. ++.++.. . ....
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~--------p~vd~v~~~~~~------~--~~~~ 64 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLH--------PAVDEVIPVALR------R--WRKT 64 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcC--------CCccEEEEechh------h--hhhc
Confidence 58999999999999999999999998 9999999998887776653 2343 4444311 0 0000
Q ss_pred HH-HHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEE
Q 048562 86 PR-TDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIV 131 (464)
Q Consensus 86 ~~-~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~ 131 (464)
+. ...-.....+.+.++..+||+||.-........++...+.+.+.
T Consensus 65 ~~~~~~~~~~~~~~~~lr~~~yD~vi~~~~~~~s~~l~~~~~~~r~g 111 (319)
T TIGR02193 65 LFSAATWREIKALRALLRAERYDAVIDAQGLIKSALVARMARGPRHG 111 (319)
T ss_pred cccchhHHHHHHHHHHHhhccchhhhhhhhhHHHHHHHHhhCCceec
Confidence 00 00001234455667788999998654333444566666644343
No 126
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.60 E-value=0.017 Score=57.05 Aligned_cols=110 Identities=14% Similarity=0.228 Sum_probs=77.3
Q ss_pred CCcEEecCcccHHHHhcc--cCceeeccc-------cch------hhHHHHHHcCCceeecccccccchhHHHHHhhhcc
Q 048562 320 KRGLIIRGWAPQLLILEH--TAVGGFMTH-------CGW------NSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKI 384 (464)
Q Consensus 320 ~~nv~v~~~vpq~~lL~~--~~~~~~ItH-------GG~------~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~ 384 (464)
.+||...+|+|+.++..+ .+..++... +.. +-+.+.+++|+|+|+. ++...+..| ++.++
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~~ 280 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENGL 280 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCCc
Confidence 668999999998776432 133222221 111 2277889999999985 456778888 69999
Q ss_pred eEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 048562 385 GVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALL 455 (464)
Q Consensus 385 G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~ 455 (464)
|..++ +.+++.+++..+. .++.+.|++|+++++++++ .|.-....+.+++
T Consensus 281 G~~v~---------------~~~el~~~l~~~~--~~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~ 330 (333)
T PRK09814 281 GFVVD---------------SLEELPEIIDNIT--EEEYQEMVENVKKISKLLR----NGYFTKKALVDAI 330 (333)
T ss_pred eEEeC---------------CHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHH
Confidence 99984 3467999998864 3456689999999999999 5665555454444
No 127
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.39 E-value=0.028 Score=57.80 Aligned_cols=124 Identities=20% Similarity=0.287 Sum_probs=80.9
Q ss_pred CCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHH-hhcCCCCcEEecCcc
Q 048562 251 TNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEE-RMGESKRGLIIRGWA 329 (464)
Q Consensus 251 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~~~~~nv~v~~~v 329 (464)
++.+||++|--....+++.++...+.|.+.+..++|....+ .+.+.. +-....+ .+. |+.+...+-+
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfP------a~ge~r----f~ty~~~~Gl~--p~riifs~va 824 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFP------AVGEQR----FRTYAEQLGLE--PDRIIFSPVA 824 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEecc------ccchHH----HHHHHHHhCCC--ccceeecccc
Confidence 44599999999889999999999999999999999999876 211000 0001111 112 5555554444
Q ss_pred cH-----HHHhcccCceeeccccchhhHHHHHHcCCceeecccccc-cchhHHHHHhhhcceEEe
Q 048562 330 PQ-----LLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAE-QFSNEKLISDVLKIGVKV 388 (464)
Q Consensus 330 pq-----~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~D-Q~~na~~v~~~~G~G~~l 388 (464)
.. .-.|..-.++-+.+. |+.|.++.|+.|||||.+|.-.- -..-+-.+. .+|+|..+
T Consensus 825 ~k~eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~-~~Gl~hli 887 (966)
T KOG4626|consen 825 AKEEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLT-ALGLGHLI 887 (966)
T ss_pred chHHHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHH-HcccHHHH
Confidence 42 223333333335555 67889999999999999997443 333444564 88999855
No 128
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.19 E-value=0.54 Score=46.52 Aligned_cols=105 Identities=12% Similarity=0.088 Sum_probs=70.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCcEEEEeCCcchhhhhhhhhhccCCCCCeE-EEEecCCCCCCCCCCCCccc
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAH--GAKSTIITSPKHALSFQKSINRNQQSGLPIT-IKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~ 85 (464)
|||++-..+.|++.-+.++.+.|+++ +.+|++++...+.+.++.. +.+. ++.++.. .....
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~vd~vi~~~~~--------~~~~~ 64 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN--------PDINALYGLDRK--------KAKAG 64 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC--------CCccEEEEeChh--------hhcch
Confidence 58999999999999999999999997 8999999999887766653 2332 3343210 00000
Q ss_pred HHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEE
Q 048562 86 PRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIV 131 (464)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~ 131 (464)
....... -.+...|+..+||++|.-........++...|.|.-+
T Consensus 65 -~~~~~~~-~~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 65 -ERKLANQ-FHLIKVLRANRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred -HHHHHHH-HHHHHHHHhCCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 0111111 2234556778999999765444567788888988654
No 129
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.12 E-value=0.85 Score=43.59 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=67.8
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEeCCcc--hhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHH---HHh
Q 048562 17 GGGHQIPMVDIARIFAAHGAKSTIITSPKH--ALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRT---DTS 91 (464)
Q Consensus 17 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 91 (464)
-.-|+.-+..|-++|.++||+|.+-+-... .+.+... +|.+..+.- .....+.. ...
T Consensus 9 n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y---------gf~~~~Igk---------~g~~tl~~Kl~~~~ 70 (346)
T COG1817 9 NPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY---------GFPYKSIGK---------HGGVTLKEKLLESA 70 (346)
T ss_pred CcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh---------CCCeEeecc---------cCCccHHHHHHHHH
Confidence 456888899999999999999886654322 1222322 565555531 11122221 112
Q ss_pred hhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEecc
Q 048562 92 MLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNGN 135 (464)
Q Consensus 92 ~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~ 135 (464)
.....|.+++.+++||+.|.- ..+-+..+|..+|+|.|.+.-+
T Consensus 71 eR~~~L~ki~~~~kpdv~i~~-~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 71 ERVYKLSKIIAEFKPDVAIGK-HSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred HHHHHHHHHHhhcCCceEeec-CCcchhhHHhhcCCceEEecCC
Confidence 235678888999999999994 5557889999999999998655
No 130
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.054 Score=55.58 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=83.1
Q ss_pred CCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHH--hhcCCCCcEEecC
Q 048562 250 ETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEE--RMGESKRGLIIRG 327 (464)
Q Consensus 250 ~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~~~~~~~nv~v~~ 327 (464)
+++.+||+|++...+..++.+..-++.++..+..++|..+++ .. ++...-|- +..+ .++ ...+++.+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~------~~--~~~~~~l~-~la~~~Gv~--~eRL~f~p 495 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG------DD--AEINARLR-DLAEREGVD--SERLRFLP 495 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC------Cc--HHHHHHHH-HHHHHcCCC--hhheeecC
Confidence 356799999999999999999999999999999999998774 00 11111011 1111 122 45566655
Q ss_pred cccHH---HHhcccCceeec---cccchhhHHHHHHcCCceeecccccccch--hHHHHHhhhcceEEe
Q 048562 328 WAPQL---LILEHTAVGGFM---THCGWNSTLESVSAGVPMVTWPITAEQFS--NEKLISDVLKIGVKV 388 (464)
Q Consensus 328 ~vpq~---~lL~~~~~~~~I---tHGG~~s~~Eal~~GvP~v~~P~~~DQ~~--na~~v~~~~G~G~~l 388 (464)
-.|.. +=+..+++ |+ -=||+.|..|+|+.|||+|..+ ++|+- |+.-++..+|+-..+
T Consensus 496 ~~~~~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 496 PAPNEDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred CCCCHHHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 55533 33334665 55 4599999999999999999986 66652 333332466766555
No 131
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.84 E-value=2 Score=41.90 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=41.5
Q ss_pred cHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccch----hHHHHHhhhcceEEec
Q 048562 330 PQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFS----NEKLISDVLKIGVKVG 389 (464)
Q Consensus 330 pq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~----na~~v~~~~G~G~~l~ 389 (464)
|....|..++. +|||=--.+-+.||+..|+|+.++++-. +.. ..+.+ ++.|+-..++
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L-~~~g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSL-EERGAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHH-HHCCCEEECC
Confidence 67788988887 5666666799999999999999999876 332 23345 3566665554
No 132
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.37 E-value=0.092 Score=47.45 Aligned_cols=121 Identities=16% Similarity=0.204 Sum_probs=65.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
||||+..-.+. +---+..|+++|.+.||+|+++.+...+......... ...++...... +........+..--
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~----~~pl~~~~~~~--~~~~~~~~~~~v~G 73 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITL----HKPLRVTEVEP--GHDPGGVEAYAVSG 73 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--S----SSEEEEEEEE---TTCCSTTEEEEESS
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecC----CCCeEEEEEEe--cccCCCCCEEEEcC
Confidence 57888776666 4456788999998889999999998765443332111 11233322210 00000001111000
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCC----------Cch---hhHHHHHHcCCCeEEEecc
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDM----------FHH---WSADVINSMNIPRIVFNGN 135 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~----------~~~---~~~~~A~~~giP~v~~~~~ 135 (464)
.-.+...-.+..++.+.+||+||+-. +++ .++.-|...|||.|.++..
T Consensus 74 TPaDcv~~al~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 74 TPADCVKLALDGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp -HHHHHHHHHHCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred cHHHHHHHHHHhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 01122355677777777899999853 222 3455566789999999755
No 133
>PHA01633 putative glycosyl transferase group 1
Probab=95.31 E-value=0.23 Score=48.85 Aligned_cols=103 Identities=17% Similarity=0.101 Sum_probs=61.9
Q ss_pred CCcEEec---CcccHH---HHhcccCceeeccc---cc-hhhHHHHHHcCCceeeccc------cccc------chhHHH
Q 048562 320 KRGLIIR---GWAPQL---LILEHTAVGGFMTH---CG-WNSTLESVSAGVPMVTWPI------TAEQ------FSNEKL 377 (464)
Q Consensus 320 ~~nv~v~---~~vpq~---~lL~~~~~~~~ItH---GG-~~s~~Eal~~GvP~v~~P~------~~DQ------~~na~~ 377 (464)
++++... +++++. ++++.+++ ||.- -| ..++.||+++|+|+|+--. .+|+ ..+...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 5677776 455543 56777777 6653 23 4689999999999998633 3333 333333
Q ss_pred HHh-hhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 048562 378 ISD-VLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAK 438 (464)
Q Consensus 378 v~~-~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~ 438 (464)
.++ ..|.|..++ ..++++++++|.+++...+ .+....++++.++++.
T Consensus 278 ~~~~~~g~g~~~~-------------~~d~~~la~ai~~~~~~~~-~~~~~~~~~~~a~~f~ 325 (335)
T PHA01633 278 YYDKEHGQKWKIH-------------KFQIEDMANAIILAFELQD-REERSMKLKELAKKYD 325 (335)
T ss_pred hcCcccCceeeec-------------CCCHHHHHHHHHHHHhccC-hhhhhHHHHHHHHhcC
Confidence 321 345565554 4699999999999965432 1123334444444443
No 134
>PRK14098 glycogen synthase; Provisional
Probab=95.12 E-value=0.52 Score=49.14 Aligned_cols=81 Identities=7% Similarity=0.025 Sum_probs=53.9
Q ss_pred CCCcEEecCcccHH---HHhcccCceeecccc---c-hhhHHHHHHcCCceeeccccc--ccchhHHHHHhhhcceEEec
Q 048562 319 SKRGLIIRGWAPQL---LILEHTAVGGFMTHC---G-WNSTLESVSAGVPMVTWPITA--EQFSNEKLISDVLKIGVKVG 389 (464)
Q Consensus 319 ~~~nv~v~~~vpq~---~lL~~~~~~~~ItHG---G-~~s~~Eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~ 389 (464)
.+.++.+..+++.. .+++.+++ |+.-. | ..+.+||+.+|+|.|+....+ |...+ .. +.-+.|..++
T Consensus 360 ~~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~-~~~~~G~l~~ 434 (489)
T PRK14098 360 HPEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VS-EDKGSGFIFH 434 (489)
T ss_pred CCCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CC-CCCCceeEeC
Confidence 36678887777753 57777777 65432 2 247889999999988876533 22111 11 1345687775
Q ss_pred cccccCCCCCCCCccChHHHHHHHHHHh
Q 048562 390 SVNWVSWSTEPSAAVGRDKVEVAVKRLM 417 (464)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~ai~~il 417 (464)
. .+++.+.++|.+++
T Consensus 435 ~-------------~d~~~la~ai~~~l 449 (489)
T PRK14098 435 D-------------YTPEALVAKLGEAL 449 (489)
T ss_pred C-------------CCHHHHHHHHHHHH
Confidence 4 47899999999876
No 135
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=94.95 E-value=0.045 Score=43.31 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=45.4
Q ss_pred CccccccccCcCCCCcEEEEecCCCCCC---CH--HhHHHHHHHHhhCCCceEEEEccC
Q 048562 238 DEGKILSFLDSKETNSVLYISFGSLARL---SP--EQLLEIAYGLEASNHSFIWVVGKI 291 (464)
Q Consensus 238 ~~~~l~~~l~~~~~~~~V~vs~GS~~~~---~~--~~~~~~~~al~~~~~~~v~~~~~~ 291 (464)
....+..|+....+++-|++|+||.... .. ..+..++++++.++..+|..+...
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 3456778998888899999999999863 22 478999999999999999999765
No 136
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.75 E-value=2.3 Score=40.58 Aligned_cols=101 Identities=16% Similarity=0.064 Sum_probs=64.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCcEEEEeCCcchhhhhhhhhhccCCCCCe-EEEEecCCCCCCCCCCCCccc
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAH--GAKSTIITSPKHALSFQKSINRNQQSGLPI-TIKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (464)
|||++-..+.|++.-+.++.++|+++ +.+|++++.....+.++.. +.+ +++.++.. .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~--------p~id~v~~~~~~--------~~~~~ 64 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM--------PEVDRVIVLPKK--------HGKLG 64 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC--------CccCEEEEcCCc--------ccccc
Confidence 58999999999999999999999997 4899999999877766653 223 23333211 00111
Q ss_pred HHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeE
Q 048562 86 PRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRI 130 (464)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v 130 (464)
+ . ....+...++..++|+++--........++...+++..
T Consensus 65 ~-~----~~~~~~~~l~~~~~D~vi~~~~~~~~~~~~~~~~~~~~ 104 (279)
T cd03789 65 L-G----ARRRLARALRRRRYDLAIDLQGSLRSALLPFLAGAPRR 104 (279)
T ss_pred h-H----HHHHHHHHHhhcCCCEEEECCCccHHHHHHHHhCCCeE
Confidence 1 1 12234445667799999987655443444555555443
No 137
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=94.68 E-value=0.17 Score=43.87 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=52.8
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHH
Q 048562 17 GGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEP 96 (464)
Q Consensus 17 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (464)
..|=-.-+..|+++|+++||+|++++........... ........ .. ........ ......
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~---------~~~~~~~~------~~---~~~~~~~~-~~~~~~ 71 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEEL---------VKIFVKIP------YP---IRKRFLRS-FFFMRR 71 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SSTE---------EEE---TT-------S---STSS--HH-HHHHHH
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhhc---------cceeeeee------cc---cccccchh-HHHHHH
Confidence 5666678999999999999999999876433221110 01111110 00 01111111 123567
Q ss_pred HHHhhhhCCCCEEEeCCCch-hhHHHHHHcCCCeEEEecc
Q 048562 97 LKSLLVDSRPDCIVHDMFHH-WSADVINSMNIPRIVFNGN 135 (464)
Q Consensus 97 l~~~l~~~~pD~Vi~D~~~~-~~~~~A~~~giP~v~~~~~ 135 (464)
+.+++++.+||+|-+-.... +....+.. ++|.+...-.
T Consensus 72 ~~~~i~~~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~ 110 (177)
T PF13439_consen 72 LRRLIKKEKPDIVHIHGPPAFWIALLACR-KVPIVYTIHG 110 (177)
T ss_dssp HHHHHHHHT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-H
T ss_pred HHHHHHHcCCCeEEecccchhHHHHHhcc-CCCEEEEeCC
Confidence 77888888999995554333 33333333 9999987544
No 138
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.59 E-value=0.27 Score=43.27 Aligned_cols=90 Identities=12% Similarity=0.080 Sum_probs=55.3
Q ss_pred hCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCC---CCCCCCcccHHHHHhhhHHHHHHhhhh-CCCCE
Q 048562 33 AHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIE---IPDTDMSATPRTDTSMLQEPLKSLLVD-SRPDC 108 (464)
Q Consensus 33 ~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~pD~ 108 (464)
++||+|+|+|.......- . +++...+..+.+-. .+-...+..-...-..+...+.++.++ ..||+
T Consensus 1 q~gh~v~fl~~~~~~~~~--~---------GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~av~~a~~~L~~~Gf~PDv 69 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP--P---------GVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQAVARAARQLRAQGFVPDV 69 (171)
T ss_pred CCCCEEEEEecCCCCCCC--C---------CcEEEEeCCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHcCCCCCE
Confidence 479999999965443322 2 56766665432222 111111111122223445566555554 78999
Q ss_pred EEeCCCchhhHHHHHHc-CCCeEEEe
Q 048562 109 IVHDMFHHWSADVINSM-NIPRIVFN 133 (464)
Q Consensus 109 Vi~D~~~~~~~~~A~~~-giP~v~~~ 133 (464)
||+-..+..+..+-..+ +.|.+.+.
T Consensus 70 I~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 70 IIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred EEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 99998888888888888 99999874
No 139
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.33 E-value=1.5 Score=45.96 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=47.0
Q ss_pred CCcEEecCccc-HHHHhcccCceeecc---ccc-hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccc
Q 048562 320 KRGLIIRGWAP-QLLILEHTAVGGFMT---HCG-WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSV 391 (464)
Q Consensus 320 ~~nv~v~~~vp-q~~lL~~~~~~~~It---HGG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 391 (464)
.++|...+|.. -..+|..+++ ||. .-| .+++.||+++|+|+|+... ..+...+ +.-..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LVp~~ 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFILDDA 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEECCC
Confidence 46788888864 3557888887 764 345 5799999999999998754 3455666 466678888654
No 140
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=93.22 E-value=2.2 Score=43.55 Aligned_cols=86 Identities=13% Similarity=0.132 Sum_probs=58.1
Q ss_pred HHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEE-eccccccCCCCCCCCccChHHHHH
Q 048562 333 LILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVK-VGSVNWVSWSTEPSAAVGRDKVEV 411 (464)
Q Consensus 333 ~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~~~~~~~~~~~~~~~~~l~~ 411 (464)
.+++++++ +|..== -++.-|+..|||.+.+++ | +-....+ +.+|.... ++.. .++.++|.+
T Consensus 323 ~iIs~~dl--~ig~Rl-Ha~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~~~~~-----------~l~~~~Li~ 384 (426)
T PRK10017 323 KILGACEL--TVGTRL-HSAIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMAIDIR-----------HLLDGSLQA 384 (426)
T ss_pred HHHhhCCE--EEEecc-hHHHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEEechh-----------hCCHHHHHH
Confidence 67777665 765433 345557888999999997 3 4444555 58888866 5665 789999999
Q ss_pred HHHHHhcCChHH-HHHHHHHHHHHHH
Q 048562 412 AVKRLMGTGEEA-AEMRRRAGELGEK 436 (464)
Q Consensus 412 ai~~il~~~~~~-~~~~~~a~~l~~~ 436 (464)
.++++++|.+.. +.+++++.+++++
T Consensus 385 ~v~~~~~~r~~~~~~l~~~v~~~r~~ 410 (426)
T PRK10017 385 MVADTLGQLPALNARLAEAVSRERQT 410 (426)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 999999985422 1234444444443
No 141
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.16 E-value=0.69 Score=35.86 Aligned_cols=65 Identities=12% Similarity=0.198 Sum_probs=41.9
Q ss_pred ccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHH
Q 048562 346 HCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAE 425 (464)
Q Consensus 346 HGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~ 425 (464)
+|-..-+.|++++|+|+|.-.. ..... ...-|...-.- . +.+++.++|..+++|+++.+.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~----~~~~~~~~~~~-----------~-~~~el~~~i~~ll~~~~~~~~ 68 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLRE----IFEDGEHIITY-----------N-DPEELAEKIEYLLENPEERRR 68 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHH----HcCCCCeEEEE-----------C-CHHHHHHHHHHHHCCHHHHHH
Confidence 5556789999999999999764 22222 22223222221 3 899999999999999854333
Q ss_pred HHHHH
Q 048562 426 MRRRA 430 (464)
Q Consensus 426 ~~~~a 430 (464)
+++++
T Consensus 69 ia~~a 73 (92)
T PF13524_consen 69 IAKNA 73 (92)
T ss_pred HHHHH
Confidence 43333
No 142
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.15 E-value=0.51 Score=41.62 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=60.7
Q ss_pred EcCCCccCHHHHHHHHHHH-HhC-CCcEEEEeCCcchhh--hhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHH
Q 048562 13 FPYVGGGHQIPMVDIARIF-AAH-GAKSTIITSPKHALS--FQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRT 88 (464)
Q Consensus 13 ~~~~~~GH~~p~l~la~~L-~~r-Gh~Vt~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (464)
+..+++||..-|+.|.+.+ .++ .++..+++....... +....... +....+..++. -... ........+.
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~---~~~~~~~~~~r--~r~v-~q~~~~~~~~ 76 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSS---SKRHKILEIPR--AREV-GQSYLTSIFT 76 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhc---cccceeeccce--EEEe-chhhHhhHHH
Confidence 4456999999999999999 344 455555554433222 22110000 00112222220 0000 0011112222
Q ss_pred HHhhhHHHHHHhhhhCCCCEEEeCCCch--hhHHHHHHc------CCCeEEEec
Q 048562 89 DTSMLQEPLKSLLVDSRPDCIVHDMFHH--WSADVINSM------NIPRIVFNG 134 (464)
Q Consensus 89 ~~~~~~~~l~~~l~~~~pD~Vi~D~~~~--~~~~~A~~~------giP~v~~~~ 134 (464)
....+...+ .++...+||+||+..-.. ..+.+|+.+ |.+.|.+-+
T Consensus 77 ~l~~~~~~~-~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 77 TLRAFLQSL-RILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred HHHHHHHHH-HHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 222233444 344567899999998765 467788888 999998743
No 143
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.72 E-value=9.1 Score=37.70 Aligned_cols=106 Identities=13% Similarity=0.035 Sum_probs=73.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC--CCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAH--GAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSA 84 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (464)
|+|||++-....|++.-..++.+.|+++ +.++++++...+.+.+... +.+.-+..- .......
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~--------p~I~~vi~~-------~~~~~~~ 65 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN--------PEIDKVIII-------DKKKKGL 65 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC--------hHhhhhccc-------ccccccc
Confidence 6789999999999999999999999998 6999999999887766653 122211110 0000000
Q ss_pred cHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEE
Q 048562 85 TPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVF 132 (464)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~ 132 (464)
.+ .-...+.+.|++.++|+||.=....-...++...++|.-.-
T Consensus 66 ~~-----~~~~~l~~~lr~~~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 66 GL-----KERLALLRTLRKERYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred ch-----HHHHHHHHHhhccCCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 01 12345667777789999998766665666777778877653
No 144
>PHA01630 putative group 1 glycosyl transferase
Probab=92.58 E-value=2 Score=42.35 Aligned_cols=41 Identities=10% Similarity=0.004 Sum_probs=27.5
Q ss_pred cccHHH---HhcccCceeeccc-cc-hhhHHHHHHcCCceeecccc
Q 048562 328 WAPQLL---ILEHTAVGGFMTH-CG-WNSTLESVSAGVPMVTWPIT 368 (464)
Q Consensus 328 ~vpq~~---lL~~~~~~~~ItH-GG-~~s~~Eal~~GvP~v~~P~~ 368 (464)
++|+.+ ++..+++-++-++ .| ..++.||+++|+|+|+.-..
T Consensus 197 ~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~g 242 (331)
T PHA01630 197 PLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKG 242 (331)
T ss_pred cCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCC
Confidence 366444 5777777322233 32 56899999999999997643
No 145
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=92.13 E-value=0.95 Score=38.36 Aligned_cols=49 Identities=8% Similarity=-0.007 Sum_probs=42.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
|++.+|++.+.++.+|-.-..-++..|.++|++|++++..-..+.+...
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 5788999999999999999999999999999999999987665555544
No 146
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=92.05 E-value=1.6 Score=43.37 Aligned_cols=107 Identities=11% Similarity=0.041 Sum_probs=71.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhC--CCcEEEEeCCcchhhhhhhhhhccCCCCCeE-EEEecCCCCCCCCCCCC
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAH--GAKSTIITSPKHALSFQKSINRNQQSGLPIT-IKTLHLPDDIEIPDTDM 82 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~ 82 (464)
.++|||++-....|++.-+.++.+.|+++ +.+|++++.+.+.+.++.. +.+. ++.++.. .
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~id~vi~~~~~--------~- 66 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN--------PEINALYGIKNK--------K- 66 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC--------CCceEEEEeccc--------c-
Confidence 47789999999999999999999999998 9999999998887766543 2332 3333210 0
Q ss_pred cccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEE
Q 048562 83 SATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIV 131 (464)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~ 131 (464)
........ ....+...|+..+||++|.-........++...|.|..+
T Consensus 67 -~~~~~~~~-~~~~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 67 -AGASEKIK-NFFSLIKVLRANKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred -ccHHHHHH-HHHHHHHHHhhCCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 00011111 122344567778999999764443455667777877655
No 147
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.48 E-value=1.7 Score=37.66 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=66.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCC-------CCC
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDI-------EIP 78 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~ 78 (464)
.++||++...|+.|-..-++.|+..|.++|+.|-=+-++... .-+.+. +|+++++..-+.. ..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR----~gGkR~-----GF~Ivdl~tg~~~~la~~~~~~~ 74 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR----EGGKRI-----GFKIVDLATGEEGILARVGFSRP 74 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee----cCCeEe-----eeEEEEccCCceEEEEEcCCCCc
Confidence 368999999999999999999999999999998755555433 221211 6777776422111 112
Q ss_pred CCCCcccHHHHHh-hhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 79 DTDMSATPRTDTS-MLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 79 ~~~~~~~~~~~~~-~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
...-+....+.++ ...+++++.+++ .|+||.|...+
T Consensus 75 rvGkY~V~v~~le~i~~~al~rA~~~--aDvIIIDEIGp 111 (179)
T COG1618 75 RVGKYGVNVEGLEEIAIPALRRALEE--ADVIIIDEIGP 111 (179)
T ss_pred ccceEEeeHHHHHHHhHHHHHHHhhc--CCEEEEecccc
Confidence 2223334444544 456777777765 79999998643
No 148
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=90.61 E-value=3.7 Score=33.59 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=36.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhh
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQK 52 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (464)
||++.+.++..|.....-++..|.++|++|.+.......+.+.+
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~ 44 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVE 44 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 58899999999999999999999999999998876544444433
No 149
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=90.44 E-value=1.9 Score=40.23 Aligned_cols=113 Identities=19% Similarity=0.267 Sum_probs=62.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
||||+.---+ =|---+..|++.|. .+++|+++.+...+.-+....... .+++...+. . ..+..--
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~----~Plr~~~~~--------~-~~~av~G 65 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLH----EPLRVRQVD--------N-GAYAVNG 65 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccc----cCceeeEec--------c-ceEEecC
Confidence 4566655433 23334566777777 999999999986654333321100 112211211 0 0111000
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCCC----------ch---hhHHHHHHcCCCeEEEecc
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDMF----------HH---WSADVINSMNIPRIVFNGN 135 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~~----------~~---~~~~~A~~~giP~v~~~~~ 135 (464)
.-.+-..=.+..++++.+||+||+..- ++ .++.=|..+|||.|.++..
T Consensus 66 TPaDCV~lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 66 TPADCVILGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred ChHHHHHHHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 111223557778888888999998532 22 3444456789999999765
No 150
>PRK14099 glycogen synthase; Provisional
Probab=90.27 E-value=6.4 Score=41.05 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=31.2
Q ss_pred CCCcEEEEEcC-----C-CccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 5 SSPVEMFFFPY-----V-GGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 5 ~~~~~vl~~~~-----~-~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
|+++||||++. - +.|=-.-+-+|.++|+++||+|.++.+..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 46788999872 2 44444567788999999999999998853
No 151
>PLN02939 transferase, transferring glycosyl groups
Probab=89.83 E-value=7.9 Score=43.27 Aligned_cols=84 Identities=10% Similarity=0.075 Sum_probs=53.5
Q ss_pred CCcEEecCcccHH---HHhcccCceeeccc----cchhhHHHHHHcCCceeeccccc--ccchh--HHHHHhhhcceEEe
Q 048562 320 KRGLIIRGWAPQL---LILEHTAVGGFMTH----CGWNSTLESVSAGVPMVTWPITA--EQFSN--EKLISDVLKIGVKV 388 (464)
Q Consensus 320 ~~nv~v~~~vpq~---~lL~~~~~~~~ItH----GG~~s~~Eal~~GvP~v~~P~~~--DQ~~n--a~~v~~~~G~G~~l 388 (464)
.++|....+.+.. .+++.+++ ||.- +-..+.+||+++|+|.|+....+ |-..+ ...+.+.-+-|..+
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 3568777777653 57877777 6643 22458999999999999876543 22211 11110123457776
Q ss_pred ccccccCCCCCCCCccChHHHHHHHHHHhc
Q 048562 389 GSVNWVSWSTEPSAAVGRDKVEVAVKRLMG 418 (464)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~~ai~~il~ 418 (464)
+. .+++.+.++|.+++.
T Consensus 914 ~~-------------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT-------------PDEQGLNSALERAFN 930 (977)
T ss_pred cC-------------CCHHHHHHHHHHHHH
Confidence 54 478889999988775
No 152
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=89.82 E-value=3.1 Score=41.24 Aligned_cols=103 Identities=14% Similarity=-0.013 Sum_probs=70.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCcEEEEeCCcchhhhhhhhhhccCCCCCeEE-EEecCCCCCCCCCCCCcc
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAH--GAKSTIITSPKHALSFQKSINRNQQSGLPITI-KTLHLPDDIEIPDTDMSA 84 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 84 (464)
||||++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.++.. +.+.- +.++. . ....
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------P~vd~vi~~~~------~--~~~~ 64 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM--------PEVNEAIPMPL------G--HGAL 64 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC--------CccCEEEeccc------c--cchh
Confidence 479999999999999999999999997 9999999998877766654 23322 22221 0 0000
Q ss_pred cHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEE
Q 048562 85 TPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIV 131 (464)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~ 131 (464)
.+. ....+...|+..+||+||.=....-...++...|+|.-.
T Consensus 65 ~~~-----~~~~l~~~lr~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 65 EIG-----ERRRLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred hhH-----HHHHHHHHHHhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 110 122345667778999999765444556677777887654
No 153
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=89.79 E-value=7.8 Score=39.76 Aligned_cols=92 Identities=11% Similarity=0.078 Sum_probs=63.0
Q ss_pred CCcEEe-cCccc--HHHHhcccCceeeccccc--hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecccccc
Q 048562 320 KRGLII-RGWAP--QLLILEHTAVGGFMTHCG--WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWV 394 (464)
Q Consensus 320 ~~nv~v-~~~vp--q~~lL~~~~~~~~ItHGG--~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 394 (464)
.+|+++ ..+.+ -.+++..+++-+-|+||. ..++.||+.+|+|++..=.... +...+ .. |..+..
T Consensus 327 y~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i-~~---g~l~~~---- 395 (438)
T TIGR02919 327 YDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFI-AS---ENIFEH---- 395 (438)
T ss_pred cCCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---Ccccc-cC---CceecC----
Confidence 356555 44455 367899999999999987 5899999999999998753321 22333 12 545543
Q ss_pred CCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 048562 395 SWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELG 434 (464)
Q Consensus 395 ~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~ 434 (464)
-+.+++.++|.++|.|++ .++++..+-+
T Consensus 396 ---------~~~~~m~~~i~~lL~d~~---~~~~~~~~q~ 423 (438)
T TIGR02919 396 ---------NEVDQLISKLKDLLNDPN---QFRELLEQQR 423 (438)
T ss_pred ---------CCHHHHHHHHHHHhcCHH---HHHHHHHHHH
Confidence 378999999999999873 3444444333
No 154
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=89.35 E-value=2.5 Score=39.90 Aligned_cols=91 Identities=14% Similarity=0.188 Sum_probs=56.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchh-hhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHAL-SFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
+||+++..-+. -..|++.|.++||+|+..+...+.. .+... | ..... .. .+
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~-------g-~~~v~-~g-----------~l--- 52 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSEGKHLYPIH-------Q-ALTVH-TG-----------AL--- 52 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCCcccccccc-------C-CceEE-EC-----------CC---
Confidence 35666544332 5689999999999999887765432 22211 0 11111 10 11
Q ss_pred HHHHhhhHHHHHHhhhhCCCCEEEeCCCch------hhHHHHHHcCCCeEEE
Q 048562 87 RTDTSMLQEPLKSLLVDSRPDCIVHDMFHH------WSADVINSMNIPRIVF 132 (464)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~------~~~~~A~~~giP~v~~ 132 (464)
-...+.+++++.++|+||--.+-+ -+..+++.+|||++.+
T Consensus 53 ------~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 53 ------DPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred ------CHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 123477888999999877554422 3567888999999998
No 155
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=88.76 E-value=1.9 Score=45.22 Aligned_cols=93 Identities=10% Similarity=0.108 Sum_probs=66.9
Q ss_pred CcEEecCcccH---HHHhcccCceeecccc---chhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEecccccc
Q 048562 321 RGLIIRGWAPQ---LLILEHTAVGGFMTHC---GWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWV 394 (464)
Q Consensus 321 ~nv~v~~~vpq---~~lL~~~~~~~~ItHG---G~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 394 (464)
..|.+.++... ..++..+.+ +|.=+ |.++..||+.+|+|+| .......| +...=|.-+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li--~--- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII--D--- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe--C---
Confidence 46777777763 345555555 77655 6779999999999999 44445556 466667776 2
Q ss_pred CCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 048562 395 SWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAK 438 (464)
Q Consensus 395 ~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~ 438 (464)
+..+|.++|..+|.+.+.+..+...+-+.++++.
T Consensus 474 ----------d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 474 ----------DISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred ----------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 6789999999999998666667777766666655
No 156
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=88.71 E-value=8.2 Score=36.40 Aligned_cols=117 Identities=18% Similarity=0.224 Sum_probs=61.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCccc
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (464)
++||||+.---+.-- --+..|+++|.+.| +|+++.+...+.-...... .+..+++..+..+.+.. .......
T Consensus 4 ~~M~ILltNDDGi~a-~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait----~~~pl~~~~~~~~~~~~--~y~v~GT 75 (257)
T PRK13932 4 KKPHILVCNDDGIEG-EGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMT----LGVPLRIKEYQKNNRFF--GYTVSGT 75 (257)
T ss_pred CCCEEEEECCCCCCC-HHHHHHHHHHHhCC-CEEEEcCCCCCCCCccccc----CCCCeEEEEEccCCCce--EEEEcCc
Confidence 456888877544322 34677889998888 7998888765433322211 01234444332110100 0000001
Q ss_pred HHHHHhhhHHHHHHhhhhCCCCEEEeCCC----------ch---hhHHHHHHcCCCeEEEec
Q 048562 86 PRTDTSMLQEPLKSLLVDSRPDCIVHDMF----------HH---WSADVINSMNIPRIVFNG 134 (464)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~----------~~---~~~~~A~~~giP~v~~~~ 134 (464)
-.+ ...-.+..++ ..+||+||+-.- ++ .++.-|..+|||.|.++.
T Consensus 76 PaD---CV~lal~~~~-~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 76 PVD---CIKVALSHIL-PEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred HHH---HHHHHHHhhc-CCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 111 1223344444 357999998542 22 345556678999999975
No 157
>PRK12342 hypothetical protein; Provisional
Probab=88.07 E-value=4.6 Score=38.05 Aligned_cols=95 Identities=11% Similarity=0.030 Sum_probs=53.7
Q ss_pred HHHHHHHHHhCCCcEEEEeCCcch--hh-h-hhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHHHHH
Q 048562 24 MVDIARIFAAHGAKSTIITSPKHA--LS-F-QKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEPLKS 99 (464)
Q Consensus 24 ~l~la~~L~~rGh~Vt~~~~~~~~--~~-~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (464)
.+..|-.|++.|.+|+.++-.... .. + ...+. . |.+=-+.-.. . .+.. . ........|..
T Consensus 40 AlE~AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~ala-m---GaD~avli~d---~-~~~g---~-----D~~ata~~La~ 103 (254)
T PRK12342 40 AIEAASQLATDGDEIAALTVGGSLLQNSKVRKDVLS-R---GPHSLYLVQD---A-QLEH---A-----LPLDTAKALAA 103 (254)
T ss_pred HHHHHHHHhhcCCEEEEEEeCCChHhHHHHHHHHHH-c---CCCEEEEEec---C-ccCC---C-----CHHHHHHHHHH
Confidence 466677788779999998765432 22 2 22211 1 3221111111 0 0000 0 11123445555
Q ss_pred hhhhCCCCEEEeCCCch------hhHHHHHHcCCCeEEEec
Q 048562 100 LLVDSRPDCIVHDMFHH------WSADVINSMNIPRIVFNG 134 (464)
Q Consensus 100 ~l~~~~pD~Vi~D~~~~------~~~~~A~~~giP~v~~~~ 134 (464)
.++...||+|++..... .+..+|+.+|+|+++...
T Consensus 104 ~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 104 AIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 56666799999976543 388899999999998753
No 158
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=86.41 E-value=11 Score=35.27 Aligned_cols=115 Identities=12% Similarity=0.176 Sum_probs=60.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
||||+.---+. |---+..|+++|.+.| +|+++.+...+..+...... ...+++..+...++.. .+.....-.
T Consensus 1 M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~----~~pl~~~~~~~~~~~~--~~~v~GTPa 72 (244)
T TIGR00087 1 MKILLTNDDGI-HSPGIRALYQALKELG-EVTVVAPARQRSGTGHSLTL----FEPLRVGQVKVKNGAH--IYAVDGTPT 72 (244)
T ss_pred CeEEEECCCCC-CCHhHHHHHHHHHhCC-CEEEEeCCCCccccccCcCC----CCCeEEEEeccCCCcc--EEEEcCcHH
Confidence 36666554332 2234678899999988 89999887665443332111 1234444432111110 000000111
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCCC----------ch---hhHHHHHHcCCCeEEEec
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDMF----------HH---WSADVINSMNIPRIVFNG 134 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~~----------~~---~~~~~A~~~giP~v~~~~ 134 (464)
+ ...-.+..++ ..+||+||+-.- ++ .++.-|..+|||.|.++.
T Consensus 73 D---cv~~gl~~l~-~~~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~ 128 (244)
T TIGR00087 73 D---CVILGINELM-PEVPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISL 128 (244)
T ss_pred H---HHHHHHHHhc-cCCCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEe
Confidence 1 1222343444 457999998642 22 355556678999999964
No 159
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=85.81 E-value=13 Score=35.11 Aligned_cols=116 Identities=17% Similarity=0.199 Sum_probs=58.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
||||+.---+. |---+..|+++|.+ +|+|+++.+...+.-....... ...++...+..+ +.....+..-..-.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg~g~sit~----~~pl~~~~~~~~-~~~~~~~~v~GTPa 73 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSASSHSITI----YEPIIIKEVKLE-GINSKAYSISGTPA 73 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCccccccccC----CCCeEEEeeccC-CCCccEEEECCcHH
Confidence 46777764443 22237788888865 6899999887654332221110 112222222110 00000000001111
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCCC----------ch---hhHHHHHHcCCCeEEEec
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDMF----------HH---WSADVINSMNIPRIVFNG 134 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~~----------~~---~~~~~A~~~giP~v~~~~ 134 (464)
+ ...-.+..++ ..+||+||+-.- ++ .++.-|..+|||.|.++.
T Consensus 74 D---cV~lal~~l~-~~~pDLVvSGIN~G~N~g~dv~ySGTVgAA~ea~~~GiPsiA~S~ 129 (253)
T PRK13933 74 D---CVRVALDKLV-PDNIDMVISGINKGLNIGNDILYSGTVSAAIEGAIYKVPSIAVSA 129 (253)
T ss_pred H---HHHHHHHHhc-CCCCCEEEECCcCCCCCCcCCccchhHHHHHHHHHcCCCeEEEEe
Confidence 1 1223344444 468999998532 22 355556678999999975
No 160
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=85.41 E-value=7.3 Score=36.79 Aligned_cols=41 Identities=20% Similarity=0.003 Sum_probs=31.0
Q ss_pred HHHHHHhhhhCCCCEEEeCCCch------hhHHHHHHcCCCeEEEec
Q 048562 94 QEPLKSLLVDSRPDCIVHDMFHH------WSADVINSMNIPRIVFNG 134 (464)
Q Consensus 94 ~~~l~~~l~~~~pD~Vi~D~~~~------~~~~~A~~~giP~v~~~~ 134 (464)
...|...+++..||+|++..... .+..+|+.+|+|++++..
T Consensus 101 A~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 101 ASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred HHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 45555666666799999965432 578899999999999754
No 161
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=85.39 E-value=16 Score=32.56 Aligned_cols=112 Identities=10% Similarity=-0.005 Sum_probs=58.4
Q ss_pred CcEEEEEcC---C-CccCHHH-HHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCC
Q 048562 7 PVEMFFFPY---V-GGGHQIP-MVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTD 81 (464)
Q Consensus 7 ~~~vl~~~~---~-~~GH~~p-~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 81 (464)
|.||.++.. | -+|=+-- .-.|+..|+++||+|+++|.....+.-... =.+++...+|.| ...
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~-------y~gv~l~~i~~~------~~g 67 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFE-------YNGVRLVYIPAP------KNG 67 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcc-------cCCeEEEEeCCC------CCC
Confidence 567777663 2 3454443 446788888899999999986554322221 125677777633 222
Q ss_pred CcccHHHHHhhhHHHHHHhhh-hCCCCEEEeCCCc--hhhHHHHHH---cCCCeEE
Q 048562 82 MSATPRTDTSMLQEPLKSLLV-DSRPDCIVHDMFH--HWSADVINS---MNIPRIV 131 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~-~~~pD~Vi~D~~~--~~~~~~A~~---~giP~v~ 131 (464)
....+..+...+..++.-.-. +.+.|+|..=... .+...+.+. .|+|+++
T Consensus 68 ~~~si~yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~v 123 (185)
T PF09314_consen 68 SAESIIYDFLSLLHALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVV 123 (185)
T ss_pred chHHHHHHHHHHHHHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEE
Confidence 222333333333333322222 2467777765544 233334443 3567666
No 162
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=84.94 E-value=9.2 Score=38.36 Aligned_cols=103 Identities=15% Similarity=0.146 Sum_probs=71.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
.-||+---|+-|--.-+++++..|+++| .|.|++.+.....++-...+. ++... .+.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL-----~~~~~-----------------~l~ 150 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRL-----GLPTN-----------------NLY 150 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHh-----CCCcc-----------------ceE
Confidence 3467777889999999999999999999 999999988876665542221 11000 001
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCCCch---------------------hhHHHHHHcCCCeEEEe
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDMFHH---------------------WSADVINSMNIPRIVFN 133 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~---------------------~~~~~A~~~giP~v~~~ 133 (464)
-..+...+.+.+.+.+.+||+||.|.... ....+|+..|++.+.+-
T Consensus 151 l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 151 LLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred EehhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 11223466677778889999999998622 23457778888888764
No 163
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=84.85 E-value=35 Score=32.15 Aligned_cols=98 Identities=18% Similarity=0.252 Sum_probs=55.1
Q ss_pred EEEEecCCCCC--CCHHhHHH----HHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEE---
Q 048562 254 VLYISFGSLAR--LSPEQLLE----IAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLI--- 324 (464)
Q Consensus 254 ~V~vs~GS~~~--~~~~~~~~----~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~--- 324 (464)
+-++-.|+... ..++.... +.+.+++.+..|+...+.. +| ++....+. ..+.. .+.+.
T Consensus 164 vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRR--Tp------~~~~s~l~----~~l~s-~~~i~w~~ 230 (329)
T COG3660 164 VAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRR--TP------DTVKSILK----NNLNS-SPGIVWNN 230 (329)
T ss_pred EEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecC--Cc------HHHHHHHH----hcccc-CceeEeCC
Confidence 33444455443 44444333 3456677899999998776 11 11111111 00110 11111
Q ss_pred -ecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeec
Q 048562 325 -IRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTW 365 (464)
Q Consensus 325 -v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~ 365 (464)
=.++=|..+.|+.++. .++|---.|-..||...|+|+.++
T Consensus 231 ~d~g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 231 EDTGYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCCCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 1245589999988776 344555568889999999999774
No 164
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=84.79 E-value=12 Score=38.56 Aligned_cols=104 Identities=15% Similarity=0.094 Sum_probs=65.2
Q ss_pred cCcccHHHH---hcccCceeecc---ccc-hhhHHHHHHcCCc----eeecccccccchhHHHHHhhhcceEEecccccc
Q 048562 326 RGWAPQLLI---LEHTAVGGFMT---HCG-WNSTLESVSAGVP----MVTWPITAEQFSNEKLISDVLKIGVKVGSVNWV 394 (464)
Q Consensus 326 ~~~vpq~~l---L~~~~~~~~It---HGG-~~s~~Eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 394 (464)
...+++.++ +..+++ |+. +-| ..+..|++++|+| +|+--..+ .+..+ +-|..++.
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllVnP---- 406 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLVNP---- 406 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEECC----
Confidence 345566554 555776 553 346 4688999999999 55554332 22223 24777765
Q ss_pred CCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048562 395 SWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALLQELK 459 (464)
Q Consensus 395 ~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~~~ 459 (464)
.+.++++++|.++|+++. ++.+++.+++++... . -+...-++.++++|.
T Consensus 407 ---------~d~~~lA~aI~~aL~~~~--~er~~r~~~~~~~v~----~-~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 ---------YDIDGMADAIARALTMPL--EEREERHRAMMDKLR----K-NDVQRWREDFLSDLN 455 (456)
T ss_pred ---------CCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHh----h-CCHHHHHHHHHHHhh
Confidence 488999999999998641 245555666666655 2 334444577777764
No 165
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=84.64 E-value=12 Score=35.45 Aligned_cols=113 Identities=12% Similarity=0.165 Sum_probs=57.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
||||+.---|. |---+..|+++|.+.| +|+++.+...+.-....... ...++...+.. ++.. .+.....-.
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg~g~aiT~----~~pl~~~~~~~-~~~~--~y~v~GTPa 71 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSATGLGITL----HKPLRMYEVDL-CGFK--VYATSGTPS 71 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCccccccccC----CCCcEEEEecc-CCcc--eEEeCCCHH
Confidence 36666665444 3355778899998887 89988887654333222110 11233333320 0110 000001111
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCC-----------Cch---hhHHHHHHcCCCeEEEec
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDM-----------FHH---WSADVINSMNIPRIVFNG 134 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~-----------~~~---~~~~~A~~~giP~v~~~~ 134 (464)
+. ..-.+..+ ..+||+||+-. +++ .++.-|..+|||.|.++.
T Consensus 72 DC---V~lal~~l--~~~pDLViSGIN~G~NlG~d~v~ySGTVgAA~Ea~~~GIPsIAvS~ 127 (266)
T PRK13934 72 DT---IYLATYGL--GRKYDLVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPAVAYSA 127 (266)
T ss_pred HH---HHHHHHhc--cCCCCeEEecCccCCCCCcCcccccHhHHHHHHHHhcCCCEEEEec
Confidence 11 11233333 56899999742 222 344455568999999975
No 166
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.61 E-value=43 Score=32.92 Aligned_cols=128 Identities=16% Similarity=-0.046 Sum_probs=75.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcc
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSA 84 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (464)
.++.|+.++..|-.||--.|.-=|..|++.|.+|.+++.......-+-. . -++++++.++.+.-.+..+ ....
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~-~-----hprI~ih~m~~l~~~~~~p-~~~~ 82 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELL-N-----HPRIRIHGMPNLPFLQGGP-RVLF 82 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHh-c-----CCceEEEeCCCCcccCCCc-hhhh
Confidence 4678999999999999888999999999999999999865442111111 1 2478898887554322111 1111
Q ss_pred cHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch-hhHHHH----HHcCCCeEEEeccchHH
Q 048562 85 TPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH-WSADVI----NSMNIPRIVFNGNCCFS 139 (464)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~-~~~~~A----~~~giP~v~~~~~~~~~ 139 (464)
......-....-+..++.-..+|+++..+--. ....++ ...|..+++=+....++
T Consensus 83 l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 83 LPLKVFWQFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred hHHHHHHHHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 11111111222233334457889988876422 233333 34577788766554443
No 167
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=84.54 E-value=7 Score=35.43 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=39.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
..||++.+.++..|-....-++..|..+|++|++++..-..+.+...
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~ 128 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEA 128 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 57999999999999999999999999999999998876444444443
No 168
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.22 E-value=5.3 Score=39.08 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=31.8
Q ss_pred CcEEEEEc-CCCccCHHHHHHHHHHHHhCCCcEEEEeCCcch
Q 048562 7 PVEMFFFP-YVGGGHQIPMVDIARIFAAHGAKSTIITSPKHA 47 (464)
Q Consensus 7 ~~~vl~~~-~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 47 (464)
++||+|+. -||-|-..-..++|-.|++.|..|.+++++...
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 35665555 568999888999999999999988887665443
No 169
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=84.18 E-value=23 Score=31.84 Aligned_cols=101 Identities=14% Similarity=0.091 Sum_probs=62.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCC-----cchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCC
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSP-----KHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDT 80 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (464)
..-.|.++...+.|-....+++|-+.+.+|++|.++-.- ..+..+.+. -.++.+.... .++.+..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~-------l~~v~~~~~g--~~~~~~~- 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEF-------GGGVEFHVMG--TGFTWET- 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhc-------CCCcEEEECC--CCCcccC-
Confidence 345788888889999999999999999999999998432 111112211 1245555543 2222111
Q ss_pred CCcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 81 DMSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
.....-...........++.+.+.++|+||.|....
T Consensus 91 ~~~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~ 126 (191)
T PRK05986 91 QDRERDIAAAREGWEEAKRMLADESYDLVVLDELTY 126 (191)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhH
Confidence 111122222333456667777889999999997764
No 170
>PRK05973 replicative DNA helicase; Provisional
Probab=84.16 E-value=4.1 Score=37.96 Aligned_cols=112 Identities=11% Similarity=0.066 Sum_probs=66.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHH
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRT 88 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (464)
-+++...||.|-..-++.++...+++|+.|.|++.+...+.+....... ++.+..+- +.+.......+ .
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~-----g~d~~~~~--~~~~~d~~d~~-~--- 134 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRAL-----GADRAQFA--DLFEFDTSDAI-C--- 134 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHc-----CCChHHhc--cceEeecCCCC-C---
Confidence 3567777899999999999999999999999999887765555443321 22111100 00000000010 0
Q ss_pred HHhhhHHHHHHhhhhCCCCEEEeCCCchh---------------hHHHHHHcCCCeEEEecc
Q 048562 89 DTSMLQEPLKSLLVDSRPDCIVHDMFHHW---------------SADVINSMNIPRIVFNGN 135 (464)
Q Consensus 89 ~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~---------------~~~~A~~~giP~v~~~~~ 135 (464)
....+.++..+.++++||.|..... ...+|+.+|+|.+.++..
T Consensus 135 ----~~~ii~~l~~~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~~gitvIl~sQl 192 (237)
T PRK05973 135 ----ADYIIARLASAPRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARERGLIIVFISQI 192 (237)
T ss_pred ----HHHHHHHHHHhhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 0112334444567899999986421 223667788998888543
No 171
>PRK06849 hypothetical protein; Provisional
Probab=84.02 E-value=4 Score=41.17 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=50.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchh-hhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcc
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHAL-SFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSA 84 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (464)
++++||+.... ....+.+++.|.++||+|+++......- ...+. --.+..+|.| ..
T Consensus 3 ~~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~---------~d~~~~~p~p--------~~-- 59 (389)
T PRK06849 3 TKKTVLITGAR----APAALELARLFHNAGHTVILADSLKYPLSRFSRA---------VDGFYTIPSP--------RW-- 59 (389)
T ss_pred CCCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHh---------hhheEEeCCC--------CC--
Confidence 47888888543 2368999999999999999987764321 11111 1123344322 00
Q ss_pred cHHHHHhhhHHHHHHhhhhCCCCEEEeCC
Q 048562 85 TPRTDTSMLQEPLKSLLVDSRPDCIVHDM 113 (464)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~ 113 (464)
......+.+.+++++.++|+||.-.
T Consensus 60 ----d~~~~~~~L~~i~~~~~id~vIP~~ 84 (389)
T PRK06849 60 ----DPDAYIQALLSIVQRENIDLLIPTC 84 (389)
T ss_pred ----CHHHHHHHHHHHHHHcCCCEEEECC
Confidence 1223456777888888899999753
No 172
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=83.89 E-value=16 Score=34.33 Aligned_cols=115 Identities=12% Similarity=0.191 Sum_probs=57.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
||||+..--+. |---+..|+++|.+ +|+|+++.+...+.-....... ...++...+...++.. .......-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg~g~ait~----~~pl~~~~~~~~~~~~--~y~v~GTPa 72 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSATGHAITI----RVPLWAKKVFISERFV--AYATTGTPA 72 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCccccccccC----CCCceEEEeecCCCcc--EEEECCcHH
Confidence 36777665444 22346777888864 6899999887654333222110 1122333322111110 000001111
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCC----------Cch---hhHHHHHHcCCCeEEEec
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDM----------FHH---WSADVINSMNIPRIVFNG 134 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~----------~~~---~~~~~A~~~giP~v~~~~ 134 (464)
+ ...-.+..++ ..+||+||+-. +++ .++.-|..+|||.|.++.
T Consensus 73 D---cV~lal~~~~-~~~pDLVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 128 (253)
T PRK13935 73 D---CVKLGYDVIM-DKKVDLVISGINRGPNLGTDVLYSGTVSGALEGAMMGVPSIAISS 128 (253)
T ss_pred H---HHHHHHHhhc-cCCCCEEEeCCccCCCCCcCCcccHhHHHHHHHHhcCCCeEEEEc
Confidence 1 1223344444 45799999853 232 344555668999999975
No 173
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=83.77 E-value=7 Score=38.38 Aligned_cols=101 Identities=13% Similarity=0.012 Sum_probs=68.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCcEEEEeCCcchhhhhhhhhhccCCCCCeE-EEEecCCCCCCCCCCCCccc
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAH--GAKSTIITSPKHALSFQKSINRNQQSGLPIT-IKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~ 85 (464)
|||++-..+.|++.-..++.+.|++. +.+|+|++.+.+.+.++.. +.+. ++.++. . .....
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~--------p~id~v~~~~~------~--~~~~~ 64 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM--------PEIRQAIDMPL------G--HGALE 64 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC--------chhceeeecCC------c--ccchh
Confidence 58999999999999999999999997 9999999988776665543 2232 222221 0 00001
Q ss_pred HHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeE
Q 048562 86 PRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRI 130 (464)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v 130 (464)
+. ....+...++..+||++|.-....-...++...|+|.-
T Consensus 65 ~~-----~~~~~~~~lr~~~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 65 LT-----ERRRLGRSLREERYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred hh-----HHHHHHHHHhhcCCCEEEECCCCHHHHHHHHHcCCCce
Confidence 11 11244566777899999987655555666777788754
No 174
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=82.99 E-value=6.8 Score=38.28 Aligned_cols=45 Identities=7% Similarity=-0.038 Sum_probs=40.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCcEEEEeCCcchhhhhh
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAH--GAKSTIITSPKHALSFQK 52 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~ 52 (464)
||||++-..+.|++.-..++.+.|+++ +.+|++++.+.+.+.++.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~ 47 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSW 47 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhc
Confidence 489999999999999999999999998 999999999877665543
No 175
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=82.61 E-value=19 Score=33.87 Aligned_cols=111 Identities=17% Similarity=0.222 Sum_probs=59.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
||||+.---|. |---+..|+++|.+. |+|+++.+...+.-+...... ...+++..+. ++ .......-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~----~~pl~~~~~~--~~----~~~v~GTPa 68 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSGASHSLTL----TRPLRVEKVD--NG----FYAVDGTPT 68 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccccC----CCCeEEEEec--CC----eEEECCcHH
Confidence 36776665443 334477889999988 799999887654333322110 1123333321 00 000000111
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCCC----------ch---hhHHHHHHcCCCeEEEec
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDMF----------HH---WSADVINSMNIPRIVFNG 134 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~~----------~~---~~~~~A~~~giP~v~~~~ 134 (464)
+ ...-.+..++. .+||+||+-.- ++ .++.-|...|||.|.++.
T Consensus 69 D---cV~~gl~~l~~-~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~ 124 (250)
T PRK00346 69 D---CVHLALNGLLD-PKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSL 124 (250)
T ss_pred H---HHHHHHHhhcc-CCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 1 12233444443 58999998542 22 355556678999999975
No 176
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=82.46 E-value=16 Score=32.97 Aligned_cols=50 Identities=10% Similarity=-0.010 Sum_probs=42.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhh
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSIN 55 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~ 55 (464)
...||++.+.++..|-....-++..|..+|++|++++..-..+.+.....
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~ 132 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVK 132 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999999999999999999988766555555433
No 177
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=81.31 E-value=5.1 Score=35.84 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCccCHHH------------HHHHHHHHHhCCCcEEEEeCCc
Q 048562 7 PVEMFFFPYVGGGHQIP------------MVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p------------~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
..|||+...++.-++.| -..||+++..+||+|+++.++.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 34566666555555544 4789999999999999999984
No 178
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=81.16 E-value=5.6 Score=34.61 Aligned_cols=108 Identities=17% Similarity=0.264 Sum_probs=62.2
Q ss_pred EEEEcCCCccCHHH----HHHHHHHHHhC-CCcEEEEeCCc---chhhhhhhhhhccCCCCCe-EEEEecCCCCCCCCCC
Q 048562 10 MFFFPYVGGGHQIP----MVDIARIFAAH-GAKSTIITSPK---HALSFQKSINRNQQSGLPI-TIKTLHLPDDIEIPDT 80 (464)
Q Consensus 10 vl~~~~~~~GH~~p----~l~la~~L~~r-Gh~Vt~~~~~~---~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~ 80 (464)
|+++.--..|.+++ .+..|++|++. |.+|+.++-.. ..+.+.+.... .+. +.+.+..+
T Consensus 2 ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~-----~G~d~v~~~~~~-------- 68 (164)
T PF01012_consen 2 ILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAK-----YGADKVYHIDDP-------- 68 (164)
T ss_dssp EEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHS-----TTESEEEEEE-G--------
T ss_pred EEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhh-----cCCcEEEEecCc--------
Confidence 45555444555555 67889999886 88888776542 22222221110 133 23333211
Q ss_pred CCcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch---hhHHHHHHcCCCeEEEe
Q 048562 81 DMSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH---WSADVINSMNIPRIVFN 133 (464)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~---~~~~~A~~~giP~v~~~ 133 (464)
....+ ..+.....+.+++++.+||+|+.-.... .+..+|.++|.|++.-.
T Consensus 69 -~~~~~--~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v 121 (164)
T PF01012_consen 69 -ALAEY--DPEAYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDV 121 (164)
T ss_dssp -GGTTC---HHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEE
T ss_pred -ccccc--CHHHHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceE
Confidence 11111 2234577888888889999999987654 57789999999999853
No 179
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=80.89 E-value=12 Score=34.20 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=34.6
Q ss_pred CcEEEEEcCC--CccCHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 048562 7 PVEMFFFPYV--GGGHQIPMVDIARIFAAHGAKSTIITSPKH 46 (464)
Q Consensus 7 ~~~vl~~~~~--~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 46 (464)
|.++++++.+ +-|-..-.-.|+..|+.+|+.|.++-..-.
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiG 42 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIG 42 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcC
Confidence 5678888877 889999999999999999999999876543
No 180
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=80.31 E-value=11 Score=28.98 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHHHHHhhhh
Q 048562 24 MVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEPLKSLLVD 103 (464)
Q Consensus 24 ~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 103 (464)
++.+++.|.+.|+++ ++|.. ..+.++.. ++.......+ ... -.+.+.+++++
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~g-Ta~~L~~~---------Gi~~~~~~~k---------i~~--------~~~~i~~~i~~ 53 (90)
T smart00851 2 LVELAKRLAELGFEL-VATGG-TAKFLREA---------GLPVKTLHPK---------VHG--------GILAILDLIKN 53 (90)
T ss_pred HHHHHHHHHHCCCEE-EEccH-HHHHHHHC---------CCcceeccCC---------CCC--------CCHHHHHHhcC
Confidence 468999999999997 45553 44555554 3433211100 000 01247788899
Q ss_pred CCCCEEEeCCC---------chhhHHHHHHcCCCeEE
Q 048562 104 SRPDCIVHDMF---------HHWSADVINSMNIPRIV 131 (464)
Q Consensus 104 ~~pD~Vi~D~~---------~~~~~~~A~~~giP~v~ 131 (464)
.++|+||.-.. ......+|-..+||+++
T Consensus 54 g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~T 90 (90)
T smart00851 54 GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGAT 90 (90)
T ss_pred CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCeeC
Confidence 99999999543 11355678888999863
No 181
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=80.05 E-value=34 Score=29.74 Aligned_cols=98 Identities=11% Similarity=0.081 Sum_probs=58.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEE---eCC--cchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCc
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTII---TSP--KHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMS 83 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~---~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (464)
-|.+++.++.|-....+++|-+.+.+|++|.|+ -+. ..+..+.+.. .++.+..... ++.+.. ...
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-------~~v~~~~~g~--~~~~~~-~~~ 73 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL-------PNIEIHRMGR--GFFWTT-END 73 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC-------CCcEEEECCC--CCccCC-CCh
Confidence 467778889999999999999999999999994 332 1222222221 2455555431 111111 111
Q ss_pred ccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 84 ATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
..-...........++.+.+.++|+||.|....
T Consensus 74 ~~~~~~a~~~~~~a~~~~~~~~~dLlVLDEi~~ 106 (159)
T cd00561 74 EEDIAAAAEGWAFAKEAIASGEYDLVILDEINY 106 (159)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEechHh
Confidence 111122233455566777788999999998764
No 182
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=79.85 E-value=17 Score=32.28 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=58.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCc--EEEE-eCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcc
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAK--STII-TSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSA 84 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~--Vt~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (464)
|||+|+..++. ..+..+.++|.+++|+ +..+ +.+........... ..+....+.. ..+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~------~~~~~~~~~~---------~~~- 61 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIK------NGIPAQVADE---------KNF- 61 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHH------TTHHEEEHHG---------GGS-
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEecccccccccccccc------CCCCEEeccc---------cCC-
Confidence 58888876544 5567778899999998 4444 44333221121111 1222222210 000
Q ss_pred cHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch-hhHHHHHHcCCCeEEEecc
Q 048562 85 TPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH-WSADVINSMNIPRIVFNGN 135 (464)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~-~~~~~A~~~giP~v~~~~~ 135 (464)
.......+++.+.+++.+||++|+-.+.. ....+.......++-++++
T Consensus 62 ---~~~~~~~~~~~~~l~~~~~Dl~v~~~~~~il~~~~l~~~~~~~iNiHps 110 (181)
T PF00551_consen 62 ---QPRSENDEELLELLESLNPDLIVVAGYGRILPKEFLSIPPYGIINIHPS 110 (181)
T ss_dssp ---SSHHHHHHHHHHHHHHTT-SEEEESS-SS---HHHHHHSTTSEEEEESS
T ss_pred ---CchHhhhhHHHHHHHhhccceeehhhhHHHhhhhhhhcccccEEEEeec
Confidence 01123456788899999999999886643 4555667777777887544
No 183
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=79.54 E-value=13 Score=29.80 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=57.1
Q ss_pred cCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHHHH
Q 048562 19 GHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEPLK 98 (464)
Q Consensus 19 GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 98 (464)
++-.-++.+++.|.+.|+++ ++| +...+.+.+. ++.+..+..+ . .-.+.+.
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l-~aT-~gT~~~l~~~---------gi~~~~v~~~--------~----------~~~~~i~ 60 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL-VAT-EGTAKYLQEA---------GIPVEVVNKV--------S----------EGRPNIV 60 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE-EEc-hHHHHHHHHc---------CCeEEEEeec--------C----------CCchhHH
Confidence 35567889999999999997 344 4455556655 3443333110 0 0236678
Q ss_pred HhhhhCCCCEEEeCCC-------chhhHHHHHHcCCCeEEE
Q 048562 99 SLLVDSRPDCIVHDMF-------HHWSADVINSMNIPRIVF 132 (464)
Q Consensus 99 ~~l~~~~pD~Vi~D~~-------~~~~~~~A~~~giP~v~~ 132 (464)
+++++.++|+||.-.. .......|-.+|||++.-
T Consensus 61 ~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 61 DLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred HHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEec
Confidence 8889999999999432 235677888999999963
No 184
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=79.20 E-value=2.8 Score=34.51 Aligned_cols=39 Identities=5% Similarity=-0.105 Sum_probs=26.6
Q ss_pred cEEEEEcCCCcc---CHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 048562 8 VEMFFFPYVGGG---HQIPMVDIARIFAAHGAKSTIITSPKH 46 (464)
Q Consensus 8 ~~vl~~~~~~~G---H~~p~l~la~~L~~rGh~Vt~~~~~~~ 46 (464)
+||+|+.-|-.+ .-.-.+.++.+.++|||+|.+++....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 578888776333 345789999999999999999887644
No 185
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.83 E-value=7.7 Score=37.11 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=50.5
Q ss_pred CcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccCh
Q 048562 327 GWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGR 406 (464)
Q Consensus 327 ~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~ 406 (464)
.|-...++|.++++ .|--.|. .+-+++--|+|+|.+|-.+-|+.-.....+.+=+|..+..- -.+
T Consensus 301 sqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv------------~~~ 365 (412)
T COG4370 301 SQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLV------------RPE 365 (412)
T ss_pred eHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeec------------CCc
Confidence 44456667777666 5544443 23456888999999999999987655433333344444332 123
Q ss_pred HHHHHHH-HHHhcCChHHHHHH
Q 048562 407 DKVEVAV-KRLMGTGEEAAEMR 427 (464)
Q Consensus 407 ~~l~~ai-~~il~~~~~~~~~~ 427 (464)
.+....+ ++++.|+++...+|
T Consensus 366 aq~a~~~~q~ll~dp~r~~air 387 (412)
T COG4370 366 AQAAAQAVQELLGDPQRLTAIR 387 (412)
T ss_pred hhhHHHHHHHHhcChHHHHHHH
Confidence 3344444 45999994333333
No 186
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=78.69 E-value=16 Score=33.10 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=56.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC--CcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHG--AKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSA 84 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rG--h~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (464)
|+||+++..+..+= +..|.+.+.+.+ ++|.++.+......+.....+ .++.+..++.. ..
T Consensus 1 m~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~-----~gIp~~~~~~~--------~~-- 62 (200)
T PRK05647 1 MKRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEA-----AGIPTFVLDHK--------DF-- 62 (200)
T ss_pred CceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHH-----cCCCEEEECcc--------cc--
Confidence 58899998865433 346666777664 778776544321112111111 14444443210 00
Q ss_pred cHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch-hhHHHHHHcCCCeEEEe
Q 048562 85 TPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH-WSADVINSMNIPRIVFN 133 (464)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~-~~~~~A~~~giP~v~~~ 133 (464)
.........+.+.+++.+||++|+-.+.. ....+-..+...++-++
T Consensus 63 ---~~~~~~~~~~~~~l~~~~~D~iv~~~~~~ii~~~~l~~~~~~~iNiH 109 (200)
T PRK05647 63 ---PSREAFDAALVEALDAYQPDLVVLAGFMRILGPTFVSAYEGRIINIH 109 (200)
T ss_pred ---CchhHhHHHHHHHHHHhCcCEEEhHHhhhhCCHHHHhhccCCEEEEe
Confidence 01112345677888899999999865533 33334444444456553
No 187
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=78.39 E-value=12 Score=31.66 Aligned_cols=49 Identities=14% Similarity=0.043 Sum_probs=40.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
.++.||++.+.+.-||=.-.--+++.|+..|.+|...+.....+.+...
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~a 58 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRA 58 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHH
Confidence 3689999999999999999999999999999999988765554444433
No 188
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=78.36 E-value=21 Score=35.78 Aligned_cols=102 Identities=17% Similarity=0.247 Sum_probs=65.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHH
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTD 89 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (464)
+++...++.|--.-++.++..++++|..|.|++.....+.+.....+. | +....+ . ..
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rl---g--~~~~~l------~-----l~------ 142 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRL---G--ISTENL------Y-----LL------ 142 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHc---C--CCcccE------E-----EE------
Confidence 566667799999999999999999999999998876555444322211 1 111000 0 00
Q ss_pred HhhhHHHHHHhhhhCCCCEEEeCCCchh---------------------hHHHHHHcCCCeEEEe
Q 048562 90 TSMLQEPLKSLLVDSRPDCIVHDMFHHW---------------------SADVINSMNIPRIVFN 133 (464)
Q Consensus 90 ~~~~~~~l~~~l~~~~pD~Vi~D~~~~~---------------------~~~~A~~~giP~v~~~ 133 (464)
.......+.+.+++.+||+||.|..... ...+|+..|++.+.+.
T Consensus 143 ~e~~le~I~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvg 207 (372)
T cd01121 143 AETNLEDILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVG 207 (372)
T ss_pred ccCcHHHHHHHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 0012344555666789999999986321 2245777899988874
No 189
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=78.11 E-value=3.9 Score=39.78 Aligned_cols=39 Identities=18% Similarity=0.270 Sum_probs=32.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchh
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHAL 48 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 48 (464)
++|..-||-|-..-..++|-.++++|++|.+++.+....
T Consensus 4 ~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 4 LFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred EEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 455567799999999999999999999999998876643
No 190
>PRK09620 hypothetical protein; Provisional
Probab=77.89 E-value=14 Score=34.30 Aligned_cols=38 Identities=11% Similarity=-0.129 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCccCHHH------------HHHHHHHHHhCCCcEEEEeCC
Q 048562 7 PVEMFFFPYVGGGHQIP------------MVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p------------~l~la~~L~~rGh~Vt~~~~~ 44 (464)
-+|||+...|+.=.+.| -..||++|.++||+|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 45677776665444333 367899999999999999765
No 191
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=77.78 E-value=36 Score=30.43 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=59.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCC----cc-hhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCC
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSP----KH-ALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDM 82 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~----~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (464)
-=|.+++..+.|-....+.+|-+..-+|.+|.++-.- .+ +......+ +..+.++..+ +++.+.....
T Consensus 29 Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~------~~~v~~~~~~--~g~tw~~~~~ 100 (198)
T COG2109 29 GLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF------GLGVEFHGMG--EGFTWETQDR 100 (198)
T ss_pred CeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh------ccceeEEecC--CceeCCCcCc
Confidence 3367777779998888888887777788888876421 11 12222221 2345555553 5554333222
Q ss_pred cccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 83 SATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
-... ..........++.+.+.++|+||.|.+.+
T Consensus 101 ~~d~-~aa~~~w~~a~~~l~~~~ydlviLDEl~~ 133 (198)
T COG2109 101 EADI-AAAKAGWEHAKEALADGKYDLVILDELNY 133 (198)
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCCEEEEehhhH
Confidence 1122 33333455666788889999999998765
No 192
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=77.29 E-value=7.7 Score=34.70 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=50.5
Q ss_pred CCCccCHHHHHHHHHHHHhC--CCcEEEEeCC-cchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHh
Q 048562 15 YVGGGHQIPMVDIARIFAAH--GAKSTIITSP-KHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTS 91 (464)
Q Consensus 15 ~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (464)
..+.|-++-..+|+++|.++ |++|.+-++. ...+.+.+... ..+....+|.+
T Consensus 28 a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~D------------------- 82 (186)
T PF04413_consen 28 AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPLD------------------- 82 (186)
T ss_dssp -SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE---S-------------------
T ss_pred ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCcc-------------------
Confidence 33889999999999999998 9999887764 33343433311 12222233321
Q ss_pred hhHHHHHHhhhhCCCCEEEeCCCch--hhHHHHHHcCCCeEEEec
Q 048562 92 MLQEPLKSLLVDSRPDCIVHDMFHH--WSADVINSMNIPRIVFNG 134 (464)
Q Consensus 92 ~~~~~l~~~l~~~~pD~Vi~D~~~~--~~~~~A~~~giP~v~~~~ 134 (464)
....+++.|+..+||++|.-.... .....|++.|||.+.++.
T Consensus 83 -~~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 83 -FPWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -SHHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -CHHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 134456777778999988876554 466678888999999853
No 193
>PRK04328 hypothetical protein; Provisional
Probab=77.16 E-value=46 Score=31.20 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=61.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCC---------CeEEEEecCCCCCC-
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGL---------PITIKTLHLPDDIE- 76 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~---------~~~~~~~~~~~~~~- 76 (464)
..-+++...++.|-..-++.++.+-+++|+.+.|++.....+.+....... |. .+.+.... +....
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~---g~d~~~~~~~~~l~iid~~-~~~~~~ 98 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQF---GWDVRKYEEEGKFAIVDAF-TGGIGS 98 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHc---CCCHHHHhhcCCEEEEecc-cccccc
Confidence 344677777799999999999888778899999999877665554432221 21 12222211 11111
Q ss_pred CCCCCCcc-cHHHHHhhhHHHHHHhhhhCCCCEEEeCCCc
Q 048562 77 IPDTDMSA-TPRTDTSMLQEPLKSLLVDSRPDCIVHDMFH 115 (464)
Q Consensus 77 ~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~ 115 (464)
......+. .-......+...+.+.+++.+++.||.|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt 138 (249)
T PRK04328 99 AAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVS 138 (249)
T ss_pred ccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChh
Confidence 00000000 0001223455667777778899999999875
No 194
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=76.94 E-value=14 Score=34.78 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=59.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
|++|+++..-+.|+ .||+.|.++|+.|++.+...+.. ... .+.....= .+.
T Consensus 2 ~~~IlvlgGT~egr-----~la~~L~~~g~~v~~Svat~~g~-~~~---------~~~~v~~G------------~l~-- 52 (248)
T PRK08057 2 MPRILLLGGTSEAR-----ALARALAAAGVDIVLSLAGRTGG-PAD---------LPGPVRVG------------GFG-- 52 (248)
T ss_pred CceEEEEechHHHH-----HHHHHHHhCCCeEEEEEccCCCC-ccc---------CCceEEEC------------CCC--
Confidence 56788887766654 78999999999988876654433 111 11211110 010
Q ss_pred HHHHhhhHHHHHHhhhhCCCCEEEeCCCch-------hhHHHHHHcCCCeEEE
Q 048562 87 RTDTSMLQEPLKSLLVDSRPDCIVHDMFHH-------WSADVINSMNIPRIVF 132 (464)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~-------~~~~~A~~~giP~v~~ 132 (464)
-.+.+.++|++.+.++|| |..-+ -+..+|+.+|||++.+
T Consensus 53 ------~~~~l~~~l~~~~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 53 ------GAEGLAAYLREEGIDLVI-DATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred ------CHHHHHHHHHHCCCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 246778888999999976 43322 3667888999999998
No 195
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=76.85 E-value=16 Score=29.56 Aligned_cols=85 Identities=11% Similarity=0.112 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHHHHH
Q 048562 20 HQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEPLKS 99 (464)
Q Consensus 20 H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (464)
+=.-++.+|+.|.+.|+++ ++| +.....+.+. ++....+... . . .-.+.+.+
T Consensus 10 ~K~~~~~~a~~l~~~G~~i-~AT-~gTa~~L~~~---------Gi~~~~v~~~-----~--~----------~g~~~i~~ 61 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL-FAT-GGTSRVLADA---------GIPVRAVSKR-----H--E----------DGEPTVDA 61 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE-EEC-cHHHHHHHHc---------CCceEEEEec-----C--C----------CCCcHHHH
Confidence 4456889999999999997 344 4455555554 3433332100 0 0 02366778
Q ss_pred hhhh-CCCCEEEeCC--Cc--------hhhHHHHHHcCCCeEEE
Q 048562 100 LLVD-SRPDCIVHDM--FH--------HWSADVINSMNIPRIVF 132 (464)
Q Consensus 100 ~l~~-~~pD~Vi~D~--~~--------~~~~~~A~~~giP~v~~ 132 (464)
++++ .++|+||.-. .. .....+|-..+||+++-
T Consensus 62 ~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 62 AIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred HHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 8888 8999999832 22 23566788899999974
No 196
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=76.49 E-value=19 Score=34.58 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=67.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCC---CCCCCCc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIE---IPDTDMS 83 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~ 83 (464)
..+|.+...|+-|-=.-.-.|.+.|.++||+|-++.-.+.....-.... |..++...+...++.- .+.....
T Consensus 51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL-----GDRiRM~~~~~~~~vFiRs~~srG~l 125 (323)
T COG1703 51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL-----GDRIRMQRLAVDPGVFIRSSPSRGTL 125 (323)
T ss_pred CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc-----ccHhhHHhhccCCCeEEeecCCCccc
Confidence 4567888899999999999999999999999999876544322211100 2223333322111110 1121222
Q ss_pred ccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch--hhHHHHHHcCCCeEEE
Q 048562 84 ATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH--WSADVINSMNIPRIVF 132 (464)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~--~~~~~A~~~giP~v~~ 132 (464)
..+.+ .......+|....+|+||.+-.-. .=..+++...+=.+.+
T Consensus 126 GGlS~----at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~ 172 (323)
T COG1703 126 GGLSR----ATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVM 172 (323)
T ss_pred hhhhH----HHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEe
Confidence 22222 234455777889999999996544 3444566555444443
No 197
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=76.05 E-value=50 Score=30.59 Aligned_cols=106 Identities=14% Similarity=0.151 Sum_probs=62.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCC---------CeEEEEecCCCCCC-
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGL---------PITIKTLHLPDDIE- 76 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~---------~~~~~~~~~~~~~~- 76 (464)
..-+++...|+.|-..-.+.++.+-+++|..|.|++.....+.+....... |. .+.+.... +..+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~---g~~~~~~~~~g~l~~~d~~-~~~~~~ 96 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQF---GWDVRKYEEEGKFAIVDAF-TGGIGE 96 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHh---CCCHHHHhhcCCEEEEecc-cccccc
Confidence 344677778899999999999888778999999999887665554432221 21 12222211 11111
Q ss_pred CCCCC-CcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 77 IPDTD-MSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 77 ~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
..... ....-......+...+.+.+++.+++.||.|....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 97 AAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred ccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 00000 00000112334566777777788999999998654
No 198
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=76.03 E-value=34 Score=29.80 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=34.0
Q ss_pred hhHHHHHHhhhhCCCCEEEeCCCch---hhHHHHHHcCCCeEEEe
Q 048562 92 MLQEPLKSLLVDSRPDCIVHDMFHH---WSADVINSMNIPRIVFN 133 (464)
Q Consensus 92 ~~~~~l~~~l~~~~pD~Vi~D~~~~---~~~~~A~~~giP~v~~~ 133 (464)
.....+.+++++.+||+|+.-.... .+..+|.++|.|+++-.
T Consensus 70 ~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv 114 (168)
T cd01715 70 PYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDV 114 (168)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeE
Confidence 4566777888888899999987654 58889999999999853
No 199
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=75.97 E-value=12 Score=32.89 Aligned_cols=44 Identities=11% Similarity=0.045 Sum_probs=36.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
+++...|+.|=..-++.++.+.+++|..|.|++.....+.+...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHH
Confidence 56777789999999999999999999999999987766655443
No 200
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=75.30 E-value=38 Score=27.34 Aligned_cols=45 Identities=11% Similarity=0.179 Sum_probs=36.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhh
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQK 52 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (464)
.|+++...+..-|-.-..-|+..|.++||+|.++......+.+..
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~ 45 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVE 45 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHH
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHH
Confidence 378999999999999999999999999999999966554344433
No 201
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=75.20 E-value=3.4 Score=34.51 Aligned_cols=45 Identities=11% Similarity=0.023 Sum_probs=35.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
+||++...|+.+=+. ...+.++|.++|++|.++.++...+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 478888887655555 999999999999999999998877776665
No 202
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=75.05 E-value=29 Score=35.77 Aligned_cols=107 Identities=13% Similarity=0.187 Sum_probs=62.3
Q ss_pred CCcEEEEEcCC-CccCHHHHHHHHHHHHhCCCcEEEEeCCc-chhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCc
Q 048562 6 SPVEMFFFPYV-GGGHQIPMVDIARIFAAHGAKSTIITSPK-HALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMS 83 (464)
Q Consensus 6 ~~~~vl~~~~~-~~GH~~p~l~la~~L~~rGh~Vt~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (464)
+|.++++.... +-|-..-...|++.|+++|++|..+-+.. +.+ ...... ..|.. ... .....+
T Consensus 2 ~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d---~~~~~~-~~g~~--~~~--------ld~~~~- 66 (451)
T PRK01077 2 RMPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYID---PAYHTA-ATGRP--SRN--------LDSWMM- 66 (451)
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCccc---HHHHHH-HhCCC--ccc--------CCceeC-
Confidence 35667777554 78899999999999999999998885531 111 110000 00100 000 110000
Q ss_pred ccHHHHHhhhHHHHHHhhhh--CCCCEEEeCCC------------chhhHHHHHHcCCCeEEEeccc
Q 048562 84 ATPRTDTSMLQEPLKSLLVD--SRPDCIVHDMF------------HHWSADVINSMNIPRIVFNGNC 136 (464)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~--~~pD~Vi~D~~------------~~~~~~~A~~~giP~v~~~~~~ 136 (464)
. .+.+++.++. .+.|++|++.. ......+|+.++.|+|.+....
T Consensus 67 -----~----~~~v~~~~~~~~~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~pviLV~~~~ 124 (451)
T PRK01077 67 -----G----EELVRALFARAAQGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAPVVLVVDAS 124 (451)
T ss_pred -----C----HHHHHHHHHHhcccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCCEEEEECCc
Confidence 0 1233333332 46899998654 1236789999999999997654
No 203
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=74.05 E-value=51 Score=29.09 Aligned_cols=99 Identities=12% Similarity=0.105 Sum_probs=59.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEE---eCC--cchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTII---TSP--KHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTD 81 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~---~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 81 (464)
+--|.++...+.|-..-.+.+|-+.+.+|++|.++ =+. ..+..+... .++.+.... .++.+.. .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~--------~~~~~~~~g--~g~~~~~-~ 73 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP--------HGVEFQVMG--TGFTWET-Q 73 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh--------cCcEEEECC--CCCeecC-C
Confidence 34567777789999999999999999999999665 222 111112111 145555443 2222111 1
Q ss_pred CcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 82 MSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
....-...........++.+.+.++|+||.|....
T Consensus 74 ~~~~~~~~~~~~~~~a~~~l~~~~~DlvVLDEi~~ 108 (173)
T TIGR00708 74 NREADTAIAKAAWQHAKEMLADPELDLVLLDELTY 108 (173)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCEEEehhhHH
Confidence 11111222333456667777788999999997654
No 204
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=74.03 E-value=6.5 Score=34.45 Aligned_cols=42 Identities=21% Similarity=0.308 Sum_probs=29.1
Q ss_pred hhHHHHHHhhhhCCCCEEEeCCCchhhH--H-H--HHHc-CCCeEEEe
Q 048562 92 MLQEPLKSLLVDSRPDCIVHDMFHHWSA--D-V--INSM-NIPRIVFN 133 (464)
Q Consensus 92 ~~~~~l~~~l~~~~pD~Vi~D~~~~~~~--~-~--A~~~-giP~v~~~ 133 (464)
...+.+.++|++.+||+||+...+.... . + ...+ ++|++.+.
T Consensus 76 ~~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvv 123 (169)
T PF06925_consen 76 LFARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVV 123 (169)
T ss_pred HHHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEE
Confidence 3467899999999999999998775333 1 1 1123 57877664
No 205
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=73.62 E-value=19 Score=37.54 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=63.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCC---------eEEEEecCCCCCCCC
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLP---------ITIKTLHLPDDIEIP 78 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~~~ 78 (464)
.-+|+...++.|--.-.+.++.+.+++|..|.|++.....+.+.....+. |.+ +.+... .
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~l---g~~~~~~~~~g~l~~~~~--------~ 332 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSW---GIDFEEMEQQGLLKIICA--------Y 332 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHc---CCChHHHhhCCcEEEEEc--------c
Confidence 44677778899999999999999999999999999988877666653322 211 111111 0
Q ss_pred CCCCcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 79 DTDMSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
+... ..+.....+.+.+++.++|+||.|....
T Consensus 333 p~~~------~~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 333 PESA------GLEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred cccC------ChHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 0000 1133466677778888999999998764
No 206
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=73.00 E-value=18 Score=33.52 Aligned_cols=102 Identities=17% Similarity=0.138 Sum_probs=60.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCC-C---CCCCCCc
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDI-E---IPDTDMS 83 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~---~~~~~~~ 83 (464)
.-+++...++.|...-+..++...+++|..|.|++.....+.+.+...+. ++.+...- ..+. . ..... .
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~-----g~~~~~~~-~~g~l~i~~~~~~~-~ 98 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESV-----KIDISDFF-LWGYLRIFPLNTEG-F 98 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHC-----CCChhHHH-hCCCceEEeccccc-c
Confidence 44667777799999999999988888999999999876655544433221 22111100 0000 0 00000 0
Q ss_pred ccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 84 ATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
.........+...+.+.+++.++++||.|....
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~ 131 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTI 131 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHH
Confidence 000112233456666777778999999997663
No 207
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=72.61 E-value=12 Score=37.70 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=41.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhh
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSI 54 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~ 54 (464)
++..|+++..-+.|-..-+-.||+.|.++|+.|.+++.+-++...-.++
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL 147 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQL 147 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHH
Confidence 3566788888899999999999999999999999999988875554443
No 208
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=72.50 E-value=41 Score=31.04 Aligned_cols=120 Identities=19% Similarity=0.176 Sum_probs=63.7
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCcEEEEe----CCc------chhhhhhhhhhccCCCCCeEEEEecCCCCCC
Q 048562 8 VEMFFFPYV-GGGHQIPMVDIARIFAAHGAKSTIIT----SPK------HALSFQKSINRNQQSGLPITIKTLHLPDDIE 76 (464)
Q Consensus 8 ~~vl~~~~~-~~GH~~p~l~la~~L~~rGh~Vt~~~----~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 76 (464)
+++++.... +-|-..-...|++.|+.+|++|.++= ... ....+.+...... +-..++.+.+..| ..
T Consensus 3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqsG~~~~~~~~D~~~l~~~~~~~~-~~~~~~py~f~~P--~s 79 (223)
T COG0132 3 KRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQTGSEETAENSDALVLQRLSGLDL-SYELINPYRFKEP--LS 79 (223)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceeeCCCCCCCCchHHHHHHhcCCCc-ccccccceecCCC--CC
Confidence 334444444 88999999999999999999999862 111 1122222200000 0001222222111 00
Q ss_pred CCCCCCccc----HHHHHhhhHHHHHHhhhhCCCCEEEeCCCch---------hhHHHHHHcCCCeEEEeccc
Q 048562 77 IPDTDMSAT----PRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH---------WSADVINSMNIPRIVFNGNC 136 (464)
Q Consensus 77 ~~~~~~~~~----~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~---------~~~~~A~~~giP~v~~~~~~ 136 (464)
+ .... .....+.+...+.++.+ ++|+|+++.... ...+++..+++|+|.+....
T Consensus 80 --P--hlAa~~eg~~I~~~~l~~~l~~l~~--~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~ 146 (223)
T COG0132 80 --P--HLAAELEGRTIDLEKLSQGLRQLLK--KYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIK 146 (223)
T ss_pred --c--HHHHhhcCCcccHHHHHHHHHhhhc--ccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCC
Confidence 0 0000 00112223344444443 899999997522 46778889999999987654
No 209
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.17 E-value=8.2 Score=38.28 Aligned_cols=50 Identities=14% Similarity=0.300 Sum_probs=41.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhh
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSIN 55 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~ 55 (464)
++.-|+|+..-+.|-..-|-.+|..+.++|+.+.++|.+.++.-...++.
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLk 149 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLK 149 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHH
Confidence 34556777788999999999999999999999999999888755544433
No 210
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=71.23 E-value=37 Score=27.50 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHHHHH
Q 048562 20 HQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEPLKS 99 (464)
Q Consensus 20 H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (464)
+-.-++.+++.|.+.|++| + ++....+.+... |..+..+.-.. +. ... -.+.+.+
T Consensus 11 dk~~~~~~a~~l~~~G~~i-~-aT~gTa~~L~~~-------gi~~~~v~~~~--~~-----~~~---------~~~~i~~ 65 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKL-Y-ATEGTADFLLEN-------GIPVTPVAWPS--EE-----PQN---------DKPSLRE 65 (116)
T ss_pred cchhHHHHHHHHHHCCCEE-E-EccHHHHHHHHc-------CCCceEeeecc--CC-----CCC---------CchhHHH
Confidence 4456889999999999997 3 444555555554 32333222110 00 000 0256778
Q ss_pred hhhhCCCCEEEeCCC---------chhhHHHHHHcCCCeEE
Q 048562 100 LLVDSRPDCIVHDMF---------HHWSADVINSMNIPRIV 131 (464)
Q Consensus 100 ~l~~~~pD~Vi~D~~---------~~~~~~~A~~~giP~v~ 131 (464)
++++.++|+||.-.. .......|-.+|||+++
T Consensus 66 ~i~~~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 66 LLAEGKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred HHHcCCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 888999999999532 12466678889999974
No 211
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=71.23 E-value=15 Score=37.66 Aligned_cols=92 Identities=15% Similarity=0.092 Sum_probs=57.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCccc
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (464)
++||||++..+++-| +|++.|.+-++-..+++.+.+...... . .....+ . ..
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn~g~~~~----------~-~~~~~~------~---~~--- 54 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGNGGFPDD----------E-LLPADS------F---SI--- 54 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCchHHhcc----------c-cccccC------c---Cc---
Confidence 468999999998888 689999998866555555544211110 0 000000 0 00
Q ss_pred HHHHHhhhHHHHHHhhhhCCCCEEEeCCCchh---hHHHHHHcCCCeEE
Q 048562 86 PRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHW---SADVINSMNIPRIV 131 (464)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~---~~~~A~~~giP~v~ 131 (464)
.-.+.+.+++++.++|+||.+.-... .+.+++.+|+|++.
T Consensus 55 ------~d~~~l~~~a~~~~iD~Vv~g~E~~l~~glad~~~~~Gip~~G 97 (426)
T PRK13789 55 ------LDKSSVQSFLKSNPFDLIVVGPEDPLVAGFADWAAELGIPCFG 97 (426)
T ss_pred ------CCHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHHHcCCCcCC
Confidence 01345566788889999999865542 44566779999753
No 212
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=70.92 E-value=30 Score=30.54 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=33.0
Q ss_pred hhHHHHHHhhhhCCCCEEEeCCCch---hhHHHHHHcCCCeEEE
Q 048562 92 MLQEPLKSLLVDSRPDCIVHDMFHH---WSADVINSMNIPRIVF 132 (464)
Q Consensus 92 ~~~~~l~~~l~~~~pD~Vi~D~~~~---~~~~~A~~~giP~v~~ 132 (464)
...+.+.+++++.+||+|++-.... .+..+|.++|.|+++=
T Consensus 78 ~~a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsd 121 (181)
T cd01985 78 ATAKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISD 121 (181)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCccee
Confidence 3456677777778899999987654 5888999999999874
No 213
>PRK11823 DNA repair protein RadA; Provisional
Probab=70.76 E-value=37 Score=34.97 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=66.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHH
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRT 88 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (464)
-+++...++.|--.-++.++..++++|+.|.|++.....+.+.....+. |....-..+ ..
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rl---g~~~~~l~~-------~~---------- 141 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERL---GLPSDNLYL-------LA---------- 141 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHc---CCChhcEEE-------eC----------
Confidence 3566777799999999999999999999999999876665544322211 111110000 00
Q ss_pred HHhhhHHHHHHhhhhCCCCEEEeCCCchh---------------------hHHHHHHcCCCeEEEe
Q 048562 89 DTSMLQEPLKSLLVDSRPDCIVHDMFHHW---------------------SADVINSMNIPRIVFN 133 (464)
Q Consensus 89 ~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~---------------------~~~~A~~~giP~v~~~ 133 (464)
+.....+.+.+++.++++||.|..... ...+|+.+|++++.+.
T Consensus 142 --e~~l~~i~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~ 205 (446)
T PRK11823 142 --ETNLEAILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVG 205 (446)
T ss_pred --CCCHHHHHHHHHhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 011234555566789999999986421 2335778899999874
No 214
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=70.41 E-value=20 Score=36.24 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=26.4
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHhCCCcEEEE
Q 048562 9 EMFFFP-YVGGGHQIPMVDIARIFAAHGAKSTII 41 (464)
Q Consensus 9 ~vl~~~-~~~~GH~~p~l~la~~L~~rGh~Vt~~ 41 (464)
+|++.. ..+.|-..-.+.|.++|++||++|.=+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 344444 448899999999999999999999744
No 215
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=70.29 E-value=21 Score=33.78 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=34.8
Q ss_pred CCcEEecCcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecc
Q 048562 320 KRGLIIRGWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWP 366 (464)
Q Consensus 320 ~~nv~v~~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P 366 (464)
...+.+.+-++-.++|.+++. +||-.+. .-.||+.+|+|++++.
T Consensus 182 ~~~~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 182 PNVVIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFG 225 (269)
T ss_pred CCeEEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEec
Confidence 334555666788899999887 7777665 6789999999999975
No 216
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=70.25 E-value=32 Score=35.55 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=66.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHH
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRT 88 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (464)
-+++...|+.|--.-++.++..+.++|+.|.|++.+...+.+.....+. |.......+ ..
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rl---g~~~~~l~~-------~~---------- 155 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRL---GLPEPNLYV-------LS---------- 155 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHc---CCChHHeEE-------cC----------
Confidence 3566667799999999999999999999999999876655443321111 111100000 00
Q ss_pred HHhhhHHHHHHhhhhCCCCEEEeCCCchh---------------------hHHHHHHcCCCeEEEe
Q 048562 89 DTSMLQEPLKSLLVDSRPDCIVHDMFHHW---------------------SADVINSMNIPRIVFN 133 (464)
Q Consensus 89 ~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~---------------------~~~~A~~~giP~v~~~ 133 (464)
+.....+.+.+++.++|+||.|..... ...+|+..|++++.+.
T Consensus 156 --e~~~~~I~~~i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~ 219 (454)
T TIGR00416 156 --ETNWEQICANIEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVG 219 (454)
T ss_pred --CCCHHHHHHHHHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 011245556677789999999976421 2235778899988874
No 217
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=70.16 E-value=7.2 Score=35.14 Aligned_cols=43 Identities=14% Similarity=-0.037 Sum_probs=32.9
Q ss_pred CCcEEEEEcCCCccCHHH-HHHHHHHHHhCCCcEEEEeCCcchhh
Q 048562 6 SPVEMFFFPYVGGGHQIP-MVDIARIFAAHGAKSTIITSPKHALS 49 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p-~l~la~~L~~rGh~Vt~~~~~~~~~~ 49 (464)
+.+||++-..|+. ..+- ...+++.|.++||+|.++.++...+.
T Consensus 4 ~~k~IllgVTGsi-aa~k~a~~lir~L~k~G~~V~vv~T~aA~~~ 47 (196)
T PRK08305 4 KGKRIGFGLTGSH-CTYDEVMPEIEKLVDEGAEVTPIVSYTVQTT 47 (196)
T ss_pred CCCEEEEEEcCHH-HHHHHHHHHHHHHHhCcCEEEEEECHhHHHH
Confidence 4567777766544 4555 79999999999999999988765443
No 218
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=69.40 E-value=25 Score=39.07 Aligned_cols=99 Identities=19% Similarity=0.168 Sum_probs=57.6
Q ss_pred HHhcccCceeecc---ccchh-hHHHHHHcCCc---eeecccccccchhHHHHHhhhc-ceEEeccccccCCCCCCCCcc
Q 048562 333 LILEHTAVGGFMT---HCGWN-STLESVSAGVP---MVTWPITAEQFSNEKLISDVLK-IGVKVGSVNWVSWSTEPSAAV 404 (464)
Q Consensus 333 ~lL~~~~~~~~It---HGG~~-s~~Eal~~GvP---~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~~~~~ 404 (464)
.++..+++ |+. .-|+| +..|++++|+| +++++-++ ..+. .+| -|+.++. .
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~----~l~~~allVnP-------------~ 428 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQ----SLGAGALLVNP-------------W 428 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchh----hhcCCeEEECC-------------C
Confidence 45666777 553 34664 78899999999 44444221 1121 233 4777765 4
Q ss_pred ChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 048562 405 GRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALLQELKS 460 (464)
Q Consensus 405 ~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~~~~ 460 (464)
+.++++++|.++|+.+. ++.+++.+++.+..+. . +...-++.+++.+++
T Consensus 429 D~~~lA~AI~~aL~m~~--~er~~r~~~~~~~v~~---~--~~~~Wa~~fl~~l~~ 477 (797)
T PLN03063 429 NITEVSSAIKEALNMSD--EERETRHRHNFQYVKT---H--SAQKWADDFMSELND 477 (797)
T ss_pred CHHHHHHHHHHHHhCCH--HHHHHHHHHHHHhhhh---C--CHHHHHHHHHHHHHH
Confidence 89999999999998431 1334444445544442 1 223334556665544
No 219
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=69.10 E-value=44 Score=34.14 Aligned_cols=91 Identities=14% Similarity=0.243 Sum_probs=55.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcc----hhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCc
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKH----ALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMS 83 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (464)
.|+.+...+.. .+.+++.|.+-|-+|..+++... .+........ .+..+ ...
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~~~~~~~~~---~~~~v----------------~~~ 341 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGAEDKRWLEM---LGVEV----------------KYR 341 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccHHHHHHHHh---cCCCc----------------eec
Confidence 36777776655 88999999999999998866531 1111111000 00000 000
Q ss_pred ccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEe
Q 048562 84 ATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFN 133 (464)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~ 133 (464)
..+.+. + +.+++.+||++|.... ...+|+++|||++.+.
T Consensus 342 ~dl~~~-------~-~~l~~~~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 342 ASLEDD-------M-EAVLEFEPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred cCHHHH-------H-HHHhhCCCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 112212 1 4557889999998833 5568999999999973
No 220
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=68.95 E-value=33 Score=29.28 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=31.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
+.+...++.|--..+..++..|.++|++|.++....
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 667777899999999999999999999999887653
No 221
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=67.89 E-value=1.1e+02 Score=28.83 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=58.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhh-hhccCCCCCe-----EEEEecCCCCCCCCCCC
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSI-NRNQQSGLPI-----TIKTLHLPDDIEIPDTD 81 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~-~~~~~~g~~~-----~~~~~~~~~~~~~~~~~ 81 (464)
.-+++...|+.|-..-++.++...+++|..|.|++.+...+.+.... .+....|.++ ++..+. .. .
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d~~~~~~~l~~id------~~--~ 108 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVDFDKIEENIILID------AA--S 108 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCCHHHHhCCEEEEE------CC--C
Confidence 34677777799999999999999989999999999874432211111 0000001111 111111 00 0
Q ss_pred CcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCc
Q 048562 82 MSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFH 115 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~ 115 (464)
..........+...+.+.+++.++|+||.|...
T Consensus 109 -~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls 141 (259)
T TIGR03878 109 -STELRENVPNLLATLAYAIKEYKVKNTVIDSIT 141 (259)
T ss_pred -chhhhhhHHHHHHHHHHHHHhhCCCEEEEcCch
Confidence 011112334456666777778899999999875
No 222
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=67.37 E-value=11 Score=28.35 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEE
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTII 41 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~ 41 (464)
..-++++..+...|...+-.+|+.|.++|+.|...
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 46789999999999999999999999999998865
No 223
>PLN00016 RNA-binding protein; Provisional
Probab=67.27 E-value=53 Score=32.78 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
.+++||++..-+.|+=.--..|++.|.++||+|+.++-..
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 3567887733333333344568899999999999888653
No 224
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=67.06 E-value=36 Score=31.12 Aligned_cols=48 Identities=13% Similarity=0.056 Sum_probs=40.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
+..||++.+.++..|-....-++..|..+|++|++++..--.+.+...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~ 134 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEA 134 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHH
Confidence 467999999999999999999999999999999999976555555444
No 225
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=66.70 E-value=17 Score=37.59 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=46.7
Q ss_pred ecCcccHHH---HhcccCceeecc---ccch-hhHHHHHHcCCc----eeecccccccchhHHHHHhhhcceEEeccccc
Q 048562 325 IRGWAPQLL---ILEHTAVGGFMT---HCGW-NSTLESVSAGVP----MVTWPITAEQFSNEKLISDVLKIGVKVGSVNW 393 (464)
Q Consensus 325 v~~~vpq~~---lL~~~~~~~~It---HGG~-~s~~Eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 393 (464)
...++++.+ ++..+++ ||. +-|+ .++.||+++|+| +|+--..+ -. +...-|..++.
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-------~~-~~~~~g~lv~p--- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-------AA-EELSGALLVNP--- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc-------ch-hhcCCCEEECC---
Confidence 345677655 4666777 552 3454 578999999999 44432211 01 11223666654
Q ss_pred cCCCCCCCCccChHHHHHHHHHHhcCC
Q 048562 394 VSWSTEPSAAVGRDKVEVAVKRLMGTG 420 (464)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~ai~~il~~~ 420 (464)
.+.++++++|.++++++
T Consensus 412 ----------~d~~~la~ai~~~l~~~ 428 (460)
T cd03788 412 ----------YDIDEVADAIHRALTMP 428 (460)
T ss_pred ----------CCHHHHHHHHHHHHcCC
Confidence 47899999999999876
No 226
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=66.48 E-value=7.9 Score=34.60 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=36.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHh-CCCcEEEEeCCcchhhhhh
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAA-HGAKSTIITSPKHALSFQK 52 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~~~~~~~~ 52 (464)
|+||++...|+.| .+-...++++|.+ .||+|.++.++...+.+..
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 5678888777666 7779999999999 5999999999877666554
No 227
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=65.92 E-value=40 Score=28.40 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=38.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
+.+|++-...+-+|-.----++..|.++|++|...+.....+.+.+.
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 35799999999999998888899999999999999887665555443
No 228
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=65.76 E-value=7.4 Score=34.71 Aligned_cols=45 Identities=7% Similarity=0.032 Sum_probs=35.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhh
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQK 52 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (464)
|+||++...++.|=+ -...+.+.|.++|++|.++.++...+.+..
T Consensus 1 ~k~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 1 MKNILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CCEEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHcCH
Confidence 567888877665544 589999999999999999998876665553
No 229
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=65.07 E-value=76 Score=25.96 Aligned_cols=44 Identities=14% Similarity=0.035 Sum_probs=37.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhh
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQK 52 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (464)
||++.+.++..|..-..-++.-|...|++|.+.+.....+.+..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~ 44 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVE 44 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 58899999999999999999999999999999987654444433
No 230
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=64.76 E-value=23 Score=29.15 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeCCcch-------------hhhh-hhhhhccCCCCCe-EEEEecCCCCCCCCCCCCcccHH
Q 048562 23 PMVDIARIFAAHGAKSTIITSPKHA-------------LSFQ-KSINRNQQSGLPI-TIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 23 p~l~la~~L~~rGh~Vt~~~~~~~~-------------~~~~-~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
-+-++...|.++|++|++++-.... ..+. +...+.. .-.++ ++..+.+|++....
T Consensus 13 ~~gg~i~~~~~~g~~v~vv~~t~G~~~~~~~~~~~~~~~~~R~~E~~~a~-~~lGv~~~~~l~~~D~~~~~--------- 82 (128)
T PF02585_consen 13 GCGGTIAKLAEAGHRVVVVTLTDGEAGHPDPTPWARELGEIRRAEARAAA-EILGVENVIFLDFPDGQLPG--------- 82 (128)
T ss_dssp HHHHHHHHHHHTT-EEEEEECE--TTTSSSSHHHHHSCHHHHHHHHHHHH-HHCT-EEEEEEEECTTSCTC---------
T ss_pred hhHHHHHHHHhcCCeEEEEEecccccCCcccchhhHhHHHHHHHHHHHHH-HHcCCceEEEeecCCCCccc---------
Confidence 3445666788899999998643210 1111 1111110 01244 44555444322111
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCC
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDM 113 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~ 113 (464)
.....+...+.+++++.+||+|++-.
T Consensus 83 ~~~~~~~~~l~~~i~~~~p~~V~t~~ 108 (128)
T PF02585_consen 83 WSWEELVRDLEDLIREFRPDVVFTPD 108 (128)
T ss_dssp HHHHHHHHHHHHHHHHH-ESEEEEE-
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEECC
Confidence 33445678899999999999998753
No 231
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=64.40 E-value=54 Score=31.08 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=56.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC---CCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCccc
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAH---GAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~r---Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (464)
|||+.---+. |---+..|++.|.+. |++|+++.+...+.-....... ...+++..+. ++. +.....
T Consensus 2 ~ILlTNDDGI-~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~----~~pl~~~~~~--~~~----yav~GT 70 (261)
T PRK13931 2 RILITNDDGI-NAPGLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISY----THPMMIAELG--PRR----FAAEGS 70 (261)
T ss_pred eEEEEcCCCC-CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccC----CCCeEEEEeC--CCe----EEEcCc
Confidence 5555543222 223355667777663 4799999887654333222110 1133333332 010 000001
Q ss_pred HHHHHhhhHHHHHHhhhhCCCCEEEeCC----------Cch---hhHHHHHHcCCCeEEEec
Q 048562 86 PRTDTSMLQEPLKSLLVDSRPDCIVHDM----------FHH---WSADVINSMNIPRIVFNG 134 (464)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~pD~Vi~D~----------~~~---~~~~~A~~~giP~v~~~~ 134 (464)
-.+ -..-.+..++...+||+||+-. +++ .++.-|..+|||.|.++.
T Consensus 71 PaD---CV~lal~~~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 71 PAD---CVLAALYDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred hHH---HHHHHHHHhcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 111 1233444555436899999853 233 344555678999999975
No 232
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=64.38 E-value=79 Score=28.84 Aligned_cols=102 Identities=11% Similarity=0.034 Sum_probs=59.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
.-+++...++.|-..-++.++...+++|+.|.|++.....+.+....... +..+..+-. ..+..-. .....+.
T Consensus 17 ~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~-----~~~~~~~~~-~~l~~~~-~~~~~~~ 89 (224)
T TIGR03880 17 HVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSK-----GWDLEDYID-KSLYIVR-LDPSDFK 89 (224)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHc-----CCChHHHHh-CCeEEEe-cCHHHHH
Confidence 34566667799998899999998888899999999987766665543322 111111000 0000000 0001111
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
.....+...+..++++.+++.||.|....
T Consensus 90 ~~~~~l~~~~~~~i~~~~~~~vVIDsls~ 118 (224)
T TIGR03880 90 TSLNRIKNELPILIKELGASRVVIDPISL 118 (224)
T ss_pred hhHHHHHHHHHHHHHHhCCCEEEEcChHH
Confidence 22334455666777788899999996553
No 233
>COG1422 Predicted membrane protein [Function unknown]
Probab=63.96 E-value=20 Score=32.07 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=49.1
Q ss_pred hHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHH
Q 048562 351 STLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRA 430 (464)
Q Consensus 351 s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a 430 (464)
|+.++++.+.=.+..|+-.=++..---++ +| .-..-+..-+++.+-|-++-+++++.+
T Consensus 24 ~~~~~i~~~ln~~f~P~i~~~~p~lvilV----~a------------------vi~gl~~~i~~~~liD~ekm~~~qk~m 81 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLSPLPPHLVILV----AA------------------VITGLYITILQKLLIDQEKMKELQKMM 81 (201)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHH----HH------------------HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 56666666666666665433333332222 11 222335567788888889999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 048562 431 GELGEKAKNAVEEGG 445 (464)
Q Consensus 431 ~~l~~~~~~~~~~gg 445 (464)
+++++++++|.++|.
T Consensus 82 ~efq~e~~eA~~~~d 96 (201)
T COG1422 82 KEFQKEFREAQESGD 96 (201)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999877766
No 234
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=63.77 E-value=52 Score=30.74 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 21 QIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 21 ~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
-.-+-.|+++|+++||+|+++++..
T Consensus 19 gdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 19 GDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred hHHHHHHHHHHHhcCCeEEEEEccc
Confidence 3456789999999999999999864
No 235
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=63.62 E-value=75 Score=32.58 Aligned_cols=97 Identities=12% Similarity=0.194 Sum_probs=56.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccC---CCCCeEEEEecCCCCCCCCCCCCc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQ---SGLPITIKTLHLPDDIEIPDTDMS 83 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~ 83 (464)
..|+.++.. -.-.+.+++.|.+-|-+|..+.................. .+.....+.
T Consensus 303 gkrv~i~g~-----~~~~~~la~~L~elGm~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~--------------- 362 (435)
T cd01974 303 GKKFALYGD-----PDFLIGLTSFLLELGMEPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYP--------------- 362 (435)
T ss_pred CCEEEEEcC-----hHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHhhcCCCCCcEEEE---------------
Confidence 466766643 234788888888889999776654332222221110000 000111100
Q ss_pred ccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEe
Q 048562 84 ATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFN 133 (464)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~ 133 (464)
..-...+.+.++..+||++|.... ...+|+++|+|++.+.
T Consensus 363 -------~~d~~e~~~~i~~~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 363 -------GKDLWHLRSLLFTEPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred -------CCCHHHHHHHHhhcCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 001345567777889999999854 5678999999998773
No 236
>PRK06988 putative formyltransferase; Provisional
Probab=63.55 E-value=53 Score=32.04 Aligned_cols=99 Identities=15% Similarity=0.204 Sum_probs=54.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchh-------hhhhhhhhccCCCCCeEEEEecCCCCCCCCC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHAL-------SFQKSINRNQQSGLPITIKTLHLPDDIEIPD 79 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 79 (464)
|+||+|+..+. ..+...+.|.++||+|..+.+..... .+..... ..++.+...
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~-----~~gip~~~~---------- 61 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAA-----EHGIPVITP---------- 61 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHH-----HcCCcEEcc----------
Confidence 57899986643 34566778888999988776643211 0111000 012222110
Q ss_pred CCCcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch-hhHHHHHHcCCCeEEEecc
Q 048562 80 TDMSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH-WSADVINSMNIPRIVFNGN 135 (464)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~-~~~~~A~~~giP~v~~~~~ 135 (464)
. ....+.+.+.+++.+||++|+-.+.. ....+-......++.++++
T Consensus 62 -~---------~~~~~~~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHps 108 (312)
T PRK06988 62 -A---------DPNDPELRAAVAAAAPDFIFSFYYRHMIPVDLLALAPRGAYNMHGS 108 (312)
T ss_pred -c---------cCCCHHHHHHHHhcCCCEEEEehhccccCHHHHhcCCCCEEEeeCc
Confidence 0 00133456778899999999876543 3334444455556766544
No 237
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=62.72 E-value=38 Score=30.50 Aligned_cols=90 Identities=12% Similarity=0.167 Sum_probs=52.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHH
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRT 88 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (464)
-|+|+...|-|-..-...||..+..+|..|.+++...++--...++..... -.++.+.... ....
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~-~l~vp~~~~~-----------~~~~--- 67 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAE-ILGVPFYVAR-----------TESD--- 67 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHH-HHTEEEEESS-----------TTSC---
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHH-Hhccccchhh-----------cchh---
Confidence 355666669999999999999999999999999988775333222211100 0145554432 0001
Q ss_pred HHhhhHHHHHHhhhhCCCCEEEeCCC
Q 048562 89 DTSMLQEPLKSLLVDSRPDCIVHDMF 114 (464)
Q Consensus 89 ~~~~~~~~l~~~l~~~~pD~Vi~D~~ 114 (464)
......+.+ +.+++.+.|+|+.|-.
T Consensus 68 ~~~~~~~~l-~~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 68 PAEIAREAL-EKFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHHHHHH-HHHHHTTSSEEEEEE-
T ss_pred hHHHHHHHH-HHHhhcCCCEEEEecC
Confidence 111122233 3345678999999964
No 238
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=62.64 E-value=87 Score=31.98 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=28.9
Q ss_pred HHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEe
Q 048562 95 EPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFN 133 (464)
Q Consensus 95 ~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~ 133 (464)
..+.+++++.+||+||.+... ..+|+++|+|++.+.
T Consensus 361 ~el~~~i~~~~pdliig~~~~---~~~a~~~~ip~i~~~ 396 (428)
T cd01965 361 WDLESLAKEEPVDLLIGNSHG---RYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHHhhccCCCEEEECchh---HHHHHhcCCCEEEec
Confidence 456678888899999999644 567888999998763
No 239
>PRK07206 hypothetical protein; Provisional
Probab=62.43 E-value=32 Score=34.88 Aligned_cols=93 Identities=10% Similarity=0.053 Sum_probs=51.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
|.+++++-.... ...+++++.++|+++.+++........-.. .+...... ....
T Consensus 2 ~k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~---------~~~~~~~~----------~~i~-- 55 (416)
T PRK07206 2 MKKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSCLLDPYYYA---------SFDTSDFI----------EVII-- 55 (416)
T ss_pred CCeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCCCCchhhhc---------ccCcccch----------hhhc--
Confidence 456666665332 346899999999999988876432110000 01000000 0000
Q ss_pred HHHHhhhHHHHHHhhhhCCCCEEEeCC--CchhhHHHHHHcCCCe
Q 048562 87 RTDTSMLQEPLKSLLVDSRPDCIVHDM--FHHWSADVINSMNIPR 129 (464)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~pD~Vi~D~--~~~~~~~~A~~~giP~ 129 (464)
. .-...+.+.+++.++|.||.-. ....+..+++.+++|+
T Consensus 56 --~--~~~~~l~~~~~~~~~d~vi~~~e~~~~~~a~l~~~l~l~~ 96 (416)
T PRK07206 56 --N--GDIDDLVEFLRKLGPEAIIAGAESGVELADRLAEILTPQY 96 (416)
T ss_pred --C--CCHHHHHHHHHHcCCCEEEECCCccHHHHHHHHHhcCCCc
Confidence 0 1134666778888999999643 2224555777788883
No 240
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=62.34 E-value=47 Score=33.82 Aligned_cols=93 Identities=14% Similarity=0.217 Sum_probs=53.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhh-hhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSF-QKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
|++++..+.. .+.+++.|.+-|-+|..+++....... ........ ..++.+ .....+.
T Consensus 282 kv~v~g~~~~-----~~~la~~L~elGmevv~~~t~~~~~~~~~~~~~~l~--~~~~~v--------------~~~~~~~ 340 (416)
T cd01980 282 RVLVSGYEGN-----ELLVARLLIESGAEVPYVSTSIPKTSLSAPDYEWLS--ALGVEV--------------RYRKSLE 340 (416)
T ss_pred eEEEECCCch-----hHHHHHHHHHcCCEEEEEecCCCChhhhHHHHHHHH--hcCCcc--------------ccCCCHH
Confidence 6656554433 566999999999999998876321111 11100000 001000 0001111
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEe
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFN 133 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~ 133 (464)
...+.+++.+||++|.. +.+..+|+++|||++.+.
T Consensus 341 --------~~~~~~~~~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 341 --------DDIAAVEEYRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred --------HHHHHHhhcCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 11355667899999987 336678999999999873
No 241
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=62.33 E-value=38 Score=31.24 Aligned_cols=43 Identities=12% Similarity=0.086 Sum_probs=34.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEeCCcchhhhhh
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAH-GAKSTIITSPKHALSFQK 52 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~~~~ 52 (464)
+++...++.|=..-++.++..++.+ |+.|.|++.+...+.+..
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 4556667999999999999999888 999999998876655444
No 242
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=61.17 E-value=1.2e+02 Score=28.35 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=45.1
Q ss_pred ceEEeccccccCCCCCCCCccChHHHHHHHHHHhcC---ChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 048562 384 IGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGT---GEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALLQELKS 460 (464)
Q Consensus 384 ~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~---~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~~~~ 460 (464)
.|+++.+. ..+.++-.+.|+..+.. .-+.+.++++|.+|+.. .||.|...+..+++++.+
T Consensus 185 FGL~l~F~-----------~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~------rg~RSGRtA~QF~~~l~g 247 (249)
T PF05673_consen 185 FGLWLSFY-----------PPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALR------RGGRSGRTARQFIDDLAG 247 (249)
T ss_pred CCcEEEec-----------CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHhc
Confidence 78888886 78999888888877731 11113677888777665 788889999999998875
No 243
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=60.13 E-value=61 Score=30.45 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=57.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
|||+++..-+.| ..|++.|.++|+ |++-+..++........ ........ ..+.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~------~~~~~v~~------------G~lg--- 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPE------LPGLEVRV------------GRLG--- 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhccc------cCCceEEE------------CCCC---
Confidence 567777765555 479999999999 76655544443333210 00111111 0110
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCCCch-------hhHHHHHHcCCCeEEE
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDMFHH-------WSADVINSMNIPRIVF 132 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~-------~~~~~A~~~giP~v~~ 132 (464)
-...+.++|++.++|+|| |..-+ -+..+|+.+|||++.+
T Consensus 54 -----~~~~l~~~l~~~~i~~vI-DATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 54 -----DEEGLAEFLRENGIDAVI-DATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred -----CHHHHHHHHHhCCCcEEE-ECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 256778889999999987 33322 3666888999999998
No 244
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=59.65 E-value=47 Score=28.62 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=24.3
Q ss_pred CCCccCHHHHHHHHHHHHhCCCcEEEE
Q 048562 15 YVGGGHQIPMVDIARIFAAHGAKSTII 41 (464)
Q Consensus 15 ~~~~GH~~p~l~la~~L~~rGh~Vt~~ 41 (464)
.++.|-..-.+.|++.|.++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 457888899999999999999999986
No 245
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=59.09 E-value=43 Score=30.69 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=57.6
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCe---------EEEEecCCCCCCCCCCC
Q 048562 11 FFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPI---------TIKTLHLPDDIEIPDTD 81 (464)
Q Consensus 11 l~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~~~~~~~~ 81 (464)
++-.--+.|--.-+..++..+...||.|++++++.....+-++.... +.++ .+.++. ..
T Consensus 32 lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl---~ydv~~~~l~G~l~~~~~~------~~--- 99 (235)
T COG2874 32 LIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESL---SYDVSDFLLSGRLLFFPVN------LE--- 99 (235)
T ss_pred EEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhc---CCCchHHHhcceeEEEEec------cc---
Confidence 33334488888889999999999999999999986654444432221 1111 122211 00
Q ss_pred CcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchh
Q 048562 82 MSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHW 117 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~ 117 (464)
....-......+.+.+.+.++..+.|+||.|.+...
T Consensus 100 ~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~ 135 (235)
T COG2874 100 PVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAF 135 (235)
T ss_pred ccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHH
Confidence 011111223334566666677789999999987653
No 246
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=58.90 E-value=38 Score=35.11 Aligned_cols=40 Identities=25% Similarity=0.224 Sum_probs=33.9
Q ss_pred CCcEEEEEcCCCccCHHHH------------HHHHHHHHhCCCcEEEEeCCc
Q 048562 6 SPVEMFFFPYVGGGHQIPM------------VDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~------------l~la~~L~~rGh~Vt~~~~~~ 45 (464)
+..|||+...|+.=.+.|. ..||+++..+|++||+++++.
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 4578999888888888774 689999999999999999764
No 247
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=58.22 E-value=36 Score=36.07 Aligned_cols=79 Identities=9% Similarity=0.011 Sum_probs=46.4
Q ss_pred HHHHhcccCceeecc---ccc-hhhHHHHHHcCCceeeccccc-ccchhHHHHHhhh-cceEEeccccccCCCCCCCCcc
Q 048562 331 QLLILEHTAVGGFMT---HCG-WNSTLESVSAGVPMVTWPITA-EQFSNEKLISDVL-KIGVKVGSVNWVSWSTEPSAAV 404 (464)
Q Consensus 331 q~~lL~~~~~~~~It---HGG-~~s~~Eal~~GvP~v~~P~~~-DQ~~na~~v~~~~-G~G~~l~~~~~~~~~~~~~~~~ 404 (464)
..+++..+++ ||. +=| ..++.||+++|+|+|+....+ .... ..+...- ..|+.+...+. .+-.-
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v--~E~v~~~~~~gi~V~~r~~------~~~~e 537 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM--EEHIEDPESYGIYIVDRRF------KSPDE 537 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh--HHHhccCCCceEEEecCCc------cchHH
Confidence 4556666666 554 345 459999999999999986532 2222 1121111 25777753210 00123
Q ss_pred ChHHHHHHHHHHhcC
Q 048562 405 GRDKVEVAVKRLMGT 419 (464)
Q Consensus 405 ~~~~l~~ai~~il~~ 419 (464)
+.++|++++.+++..
T Consensus 538 ~v~~La~~m~~~~~~ 552 (590)
T cd03793 538 SVQQLTQYMYEFCQL 552 (590)
T ss_pred HHHHHHHHHHHHhCC
Confidence 567788888888854
No 248
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=57.86 E-value=1e+02 Score=29.43 Aligned_cols=105 Identities=10% Similarity=0.114 Sum_probs=58.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
|+=|++...|+.|-......|.+.|.+.|.+|.++...... +... . +.. ...-
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~----------~-y~~--------------~~~E 53 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRN----------D-YAD--------------SKKE 53 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTS----------S-S----------------GGGH
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchh----------h-hhc--------------hhhh
Confidence 34578888999999999999999999999999988744221 1110 1 111 1111
Q ss_pred HHHHhhhHHHHHHhhhhCCCCEEEeCCCch------hhHHHHHHcCCCeEEEeccchHHH
Q 048562 87 RTDTSMLQEPLKSLLVDSRPDCIVHDMFHH------WSADVINSMNIPRIVFNGNCCFSR 140 (464)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~------~~~~~A~~~giP~v~~~~~~~~~~ 140 (464)
......+...+.+.+... ++||+|...+ -...+|+.++.+++.+........
T Consensus 54 k~~R~~l~s~v~r~ls~~--~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~ 111 (270)
T PF08433_consen 54 KEARGSLKSAVERALSKD--TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLET 111 (270)
T ss_dssp HHHHHHHHHHHHHHHTT---SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHH
T ss_pred HHHHHHHHHHHHHhhccC--eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHH
Confidence 222233455666666433 8999998653 367799999999998765544333
No 249
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=57.65 E-value=17 Score=28.31 Aligned_cols=85 Identities=14% Similarity=0.177 Sum_probs=48.6
Q ss_pred HHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHHHHHhhhh
Q 048562 24 MVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEPLKSLLVD 103 (464)
Q Consensus 24 ~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 103 (464)
++.+|+.|.+.||++ +++....+.+.+. ++....+... ....+.. .-..++.+++++
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~---------Gi~~~~v~~~----~~~~~~~--------~g~~~i~~~i~~ 58 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEH---------GIEVTEVVNK----IGEGESP--------DGRVQIMDLIKN 58 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHT---------T--EEECCEE----HSTG-GG--------THCHHHHHHHHT
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHc---------CCCceeeeee----cccCccC--------CchhHHHHHHHc
Confidence 578999999999874 3444445556655 4443332100 0000000 001167899999
Q ss_pred CCCCEEEeCCCch---------hhHHHHHHcCCCeEE
Q 048562 104 SRPDCIVHDMFHH---------WSADVINSMNIPRIV 131 (464)
Q Consensus 104 ~~pD~Vi~D~~~~---------~~~~~A~~~giP~v~ 131 (464)
.+.|+||....-. ....+|...+||+++
T Consensus 59 ~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 59 GKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp TSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred CCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 9999999986532 235577788999863
No 250
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=57.55 E-value=1.1e+02 Score=27.30 Aligned_cols=105 Identities=11% Similarity=0.078 Sum_probs=54.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC--cEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCccc
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGA--KSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh--~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (464)
+||+++..+..+ .+..+.+.+.+.++ +|.++.++...........+ .++.+..+... ..
T Consensus 1 ~riail~sg~gs---~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~-----~gip~~~~~~~--------~~--- 61 (190)
T TIGR00639 1 KRIVVLISGNGS---NLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQ-----AGIPTFVLSLK--------DF--- 61 (190)
T ss_pred CeEEEEEcCCCh---hHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHH-----cCCCEEEECcc--------cc---
Confidence 468787775443 34567777777665 66665444221111111110 14444433210 00
Q ss_pred HHHHHhhhHHHHHHhhhhCCCCEEEeCCCch-hhHHHHHHcCCCeEEEe
Q 048562 86 PRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH-WSADVINSMNIPRIVFN 133 (464)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~-~~~~~A~~~giP~v~~~ 133 (464)
...+.....+.+.+++.++|++|+-.+.. ....+-..+...++-++
T Consensus 62 --~~~~~~~~~~~~~l~~~~~D~iv~~~~~~il~~~~l~~~~~~~iNiH 108 (190)
T TIGR00639 62 --PSREAFDQAIIEELRAHEVDLVVLAGFMRILGPTFLSRFAGRILNIH 108 (190)
T ss_pred --CchhhhhHHHHHHHHhcCCCEEEEeCcchhCCHHHHhhccCCEEEEe
Confidence 01122345677889999999999976643 34444444444556653
No 251
>PRK05920 aromatic acid decarboxylase; Validated
Probab=56.56 E-value=15 Score=33.29 Aligned_cols=45 Identities=9% Similarity=-0.027 Sum_probs=35.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhh
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQK 52 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (464)
++||++--.| ....+-...+.+.|.+.||+|.++.+....+.+..
T Consensus 3 ~krIllgITG-siaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITG-ASGAIYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeC-HHHHHHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 5677776665 44457899999999999999999998876665543
No 252
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=56.55 E-value=73 Score=33.42 Aligned_cols=101 Identities=10% Similarity=0.075 Sum_probs=60.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCC-CCCCCccc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEI-PDTDMSAT 85 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 85 (464)
..-+++...++.|-..-+..++...+++|..|.|++.....+.+....... ++.+..+-....+.. .......
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~-----g~~~~~~~~~g~l~i~~~~~~~~- 346 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSW-----GIDLEKMEEKGLLKIICARPESY- 346 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHc-----CCChHHHhhcCCceeecCCcccC-
Confidence 345667777799999999999999999999999999877666555442221 221111100000000 0000000
Q ss_pred HHHHHhhhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 86 PRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
........+.+.+++.++|+||.|....
T Consensus 347 ---~~~~~~~~i~~~i~~~~~~~vVIDslt~ 374 (509)
T PRK09302 347 ---GLEDHLIIIKREIEEFKPSRVAIDPLSA 374 (509)
T ss_pred ---CHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 1123345666777788999999998754
No 253
>PRK14099 glycogen synthase; Provisional
Probab=56.55 E-value=17 Score=37.80 Aligned_cols=96 Identities=13% Similarity=0.204 Sum_probs=52.0
Q ss_pred CCcE-EecCcccHH-HHh-cccCceeecc---ccc-hhhHHHHHHcCCceeeccccc--ccchhHHHHHh--hhcceEEe
Q 048562 320 KRGL-IIRGWAPQL-LIL-EHTAVGGFMT---HCG-WNSTLESVSAGVPMVTWPITA--EQFSNEKLISD--VLKIGVKV 388 (464)
Q Consensus 320 ~~nv-~v~~~vpq~-~lL-~~~~~~~~It---HGG-~~s~~Eal~~GvP~v~~P~~~--DQ~~na~~v~~--~~G~G~~l 388 (464)
+.++ ...+|-... .++ +.+++ |+. +=| ..+.+||+++|+|.|+....+ |-........+ ..+.|..+
T Consensus 349 ~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~ 426 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQF 426 (485)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEe
Confidence 4454 345653222 222 23555 664 334 357889999998777654322 32211111100 11468888
Q ss_pred ccccccCCCCCCCCccChHHHHHHHHH---HhcCChHHHHHHHHH
Q 048562 389 GSVNWVSWSTEPSAAVGRDKVEVAVKR---LMGTGEEAAEMRRRA 430 (464)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~~ai~~---il~~~~~~~~~~~~a 430 (464)
+. -++++|.++|.+ +++|++..+.+.+++
T Consensus 427 ~~-------------~d~~~La~ai~~a~~l~~d~~~~~~l~~~~ 458 (485)
T PRK14099 427 SP-------------VTADALAAALRKTAALFADPVAWRRLQRNG 458 (485)
T ss_pred CC-------------CCHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 65 378999999997 566664444444444
No 254
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=56.36 E-value=52 Score=31.61 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=17.4
Q ss_pred hhhHHHHHHhhhhCCCCEEEe
Q 048562 91 SMLQEPLKSLLVDSRPDCIVH 111 (464)
Q Consensus 91 ~~~~~~l~~~l~~~~pD~Vi~ 111 (464)
......+.++|++.+||+||.
T Consensus 107 ~~~~~~L~~iIr~~~PdvVvT 127 (283)
T TIGR03446 107 EEAAEPLVRVIREFRPHVITT 127 (283)
T ss_pred HHHHHHHHHHHHHcCCEEEEe
Confidence 345688889999999999987
No 255
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=55.95 E-value=62 Score=29.88 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCc-EEEEeCC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAK-STIITSP 44 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~-Vt~~~~~ 44 (464)
|+-|+|...|..|--.....|.+.|.++||. ++.+...
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d 39 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDD 39 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEech
Confidence 4568888899999999999999999999986 4444443
No 256
>PRK14098 glycogen synthase; Provisional
Probab=55.94 E-value=19 Score=37.60 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=31.2
Q ss_pred CCCcEEEEEcC-----C-CccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 5 SSPVEMFFFPY-----V-GGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 5 ~~~~~vl~~~~-----~-~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
.+|+||||++. - +.|=-.-+-+|.++|+++||+|.++.+..
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 45799999872 1 44444557788999999999999998853
No 257
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=55.72 E-value=90 Score=30.41 Aligned_cols=32 Identities=6% Similarity=0.070 Sum_probs=23.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCC
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 44 (464)
|||+|+..+.. .+...++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcC
Confidence 47888866543 367778899999999866553
No 258
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=55.31 E-value=98 Score=24.94 Aligned_cols=42 Identities=12% Similarity=-0.027 Sum_probs=33.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhh
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQ 51 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 51 (464)
++....++..|-....-++..|.++|++|.+.......+.+.
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~ 43 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIV 43 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHH
Confidence 566777799999999999999999999999987654443333
No 259
>PRK10867 signal recognition particle protein; Provisional
Probab=55.26 E-value=51 Score=33.75 Aligned_cols=44 Identities=11% Similarity=0.199 Sum_probs=36.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEeCCcchhhh
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAH-GAKSTIITSPKHALSF 50 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~~ 50 (464)
+.-|+|+..+|.|-..-+..||..|+++ |+.|.+++.+.+....
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAA 144 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHH
Confidence 3445666666999999999999999999 9999999998776544
No 260
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=55.20 E-value=26 Score=32.04 Aligned_cols=69 Identities=12% Similarity=0.118 Sum_probs=44.6
Q ss_pred CcEEEEEcCCCcc--CHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcc
Q 048562 7 PVEMFFFPYVGGG--HQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSA 84 (464)
Q Consensus 7 ~~~vl~~~~~~~G--H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (464)
|+|||+..+.-+| ..||...++++|.... .. +..+....+|.
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~~~--------------~~---------~~~v~~~~LPV------------- 44 (211)
T PRK13196 1 MPTLLLTGFEPFHTHPVNPSAQAAQALNGEQ--------------AG---------ALRVHSALLPV------------- 44 (211)
T ss_pred CCEEEEEeecCCCCCCCCcHHHHHHhccccc--------------CC---------CcEEEEEEeCC-------------
Confidence 6789888876333 5899999999996541 00 11244445542
Q ss_pred cHHHHHhhhHHHHHHhhhhCCCCEEEeCCCc
Q 048562 85 TPRTDTSMLQEPLKSLLVDSRPDCIVHDMFH 115 (464)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~ 115 (464)
......+.+.+++++.+||+||+=...
T Consensus 45 ----~~~~~~~~l~~~~~~~~Pd~vi~~G~a 71 (211)
T PRK13196 45 ----EPRAAMAALSRLLDELQPSAVLLTGLA 71 (211)
T ss_pred ----ChhHHHHHHHHHHHHhCCCEEEEeccc
Confidence 122235677788888999999987544
No 261
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=54.63 E-value=96 Score=31.49 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=36.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcch
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHA 47 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 47 (464)
+..|+|+...|.|-..-+..||..|..+|+.|.+++.+.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 45677777789999999999999999999999999987764
No 262
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=54.08 E-value=75 Score=32.50 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=35.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchh
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHAL 48 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 48 (464)
.-|+|+..+|.|-..-+..||..|.++|+.|.+++...+..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 34566667799999999999999999999999999887763
No 263
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=53.89 E-value=31 Score=37.96 Aligned_cols=111 Identities=19% Similarity=0.120 Sum_probs=61.5
Q ss_pred EecCcccHHH---HhcccCceeeccc---cc-hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCC
Q 048562 324 IIRGWAPQLL---ILEHTAVGGFMTH---CG-WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSW 396 (464)
Q Consensus 324 ~v~~~vpq~~---lL~~~~~~~~ItH---GG-~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 396 (464)
...+++++.+ ++..+++ |+.- -| .....|++++|+|-.+.|+..+--.-+..+ .-|+.++.
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P------ 412 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP------ 412 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC------
Confidence 3456777665 4455776 5543 34 468899999987633333222222222222 23777765
Q ss_pred CCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Q 048562 397 STEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALLQELKS 460 (464)
Q Consensus 397 ~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~~~~ 460 (464)
.+.++++++|.++|.++.+ +.+++.+++++.++ . -+...-++.+++.+++
T Consensus 413 -------~d~~~la~ai~~~l~~~~~--e~~~r~~~~~~~v~----~-~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 413 -------NDIEGIAAAIKRALEMPEE--EQRERMQAMQERLR----R-YDVHKWASDFLDELRE 462 (726)
T ss_pred -------CCHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHH----h-CCHHHHHHHHHHHHHH
Confidence 4899999999999986521 23333344444433 1 2333445566665554
No 264
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=53.85 E-value=1.3e+02 Score=30.10 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=54.7
Q ss_pred CCcEEEEEc-CCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcc
Q 048562 6 SPVEMFFFP-YVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSA 84 (464)
Q Consensus 6 ~~~~vl~~~-~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (464)
.+.+|.++. .|..|. .+|+.|.++||+|+++...... ....... +.++.+...|..
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~~~~-~~~~~~~-----~aDlVilavP~~------------ 153 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQDDWD-RAEDILA-----DAGMVIVSVPIH------------ 153 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCCcch-hHHHHHh-----cCCEEEEeCcHH------------
Confidence 357898886 676665 6899999999999998764321 1111111 235555555410
Q ss_pred cHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch---hhHHHHHHcCCCeEEE
Q 048562 85 TPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH---WSADVINSMNIPRIVF 132 (464)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~---~~~~~A~~~giP~v~~ 132 (464)
. ..+.+.++.. .+++.||.|.... ....+++.+..++|..
T Consensus 154 ----~---~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~~~fvg~ 196 (374)
T PRK11199 154 ----L---TEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHSGPVLGL 196 (374)
T ss_pred ----H---HHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCCCCEEee
Confidence 1 1222233333 6899999997653 1223344444455544
No 265
>PRK05595 replicative DNA helicase; Provisional
Probab=53.72 E-value=46 Score=34.22 Aligned_cols=42 Identities=14% Similarity=0.128 Sum_probs=33.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEeCCcchhhhh
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFA-AHGAKSTIITSPKHALSFQ 51 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~~ 51 (464)
+++...|+.|-..-++.+|..++ ++|+.|.|++.+...+.+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~ 246 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLA 246 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHH
Confidence 45666779999999999998876 6799999998876654443
No 266
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=52.86 E-value=43 Score=30.94 Aligned_cols=97 Identities=11% Similarity=0.139 Sum_probs=52.0
Q ss_pred CCcEEEEecCCCCC---CCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCC-C-CcEEe
Q 048562 251 TNSVLYISFGSLAR---LSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGES-K-RGLII 325 (464)
Q Consensus 251 ~~~~V~vs~GS~~~---~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~-~-~nv~v 325 (464)
+++.|.+..|+... .+.+.+.++++.+.+.+..+++..+.. +.. ....+.+.+. . ..+.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~----------~~~-----~~~~~~~~~~~~~~~~~~ 168 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE----------EQE-----KEIADQIAAGLQNPVINL 168 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH----------HHH-----HHHHHHHHTTHTTTTEEE
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch----------HHH-----HHHHHHHHHhcccceEee
Confidence 45688888888764 678899999999988886766554433 100 0111111100 1 13334
Q ss_pred cCccc---HHHHhcccCceeeccccchhhHHHHHHcCCceeec
Q 048562 326 RGWAP---QLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTW 365 (464)
Q Consensus 326 ~~~vp---q~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~ 365 (464)
.+-.. ...++.++++ +|+.- .|.+.=|.+.|+|+|++
T Consensus 169 ~~~~~l~e~~ali~~a~~--~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 169 AGKTSLRELAALISRADL--VIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp TTTS-HHHHHHHHHTSSE--EEEES-SHHHHHHHHTT--EEEE
T ss_pred cCCCCHHHHHHHHhcCCE--EEecC-ChHHHHHHHHhCCEEEE
Confidence 33332 3567778886 77754 45667778889999998
No 267
>PRK00784 cobyric acid synthase; Provisional
Probab=52.74 E-value=1.1e+02 Score=32.02 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=29.6
Q ss_pred CcEEEEEcCC-CccCHHHHHHHHHHHHhCCCcEEEEeC
Q 048562 7 PVEMFFFPYV-GGGHQIPMVDIARIFAAHGAKSTIITS 43 (464)
Q Consensus 7 ~~~vl~~~~~-~~GH~~p~l~la~~L~~rGh~Vt~~~~ 43 (464)
|..+++.... .-|-..-+..|++.|+++|++|..+=+
T Consensus 2 ~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 2 AKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 3456666554 689999999999999999999987644
No 268
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=52.71 E-value=1.3e+02 Score=30.86 Aligned_cols=35 Identities=14% Similarity=0.315 Sum_probs=29.0
Q ss_pred HHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEE
Q 048562 95 EPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVF 132 (464)
Q Consensus 95 ~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~ 132 (464)
..+.+++++.+||++|.+.. ...+|+++|+|++.+
T Consensus 362 ~e~~~~l~~~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKELKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHhcCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 45677788889999999965 457899999999976
No 269
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=52.59 E-value=1e+02 Score=28.97 Aligned_cols=107 Identities=12% Similarity=0.100 Sum_probs=66.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeE-EEE---ecCCCCCC-CCCCC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPIT-IKT---LHLPDDIE-IPDTD 81 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~---~~~~~~~~-~~~~~ 81 (464)
..-+++...|+.|...-..+++...+++|..|.|++.....+.+.+...+. |-.+. +.. +-..+.+. .....
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~---g~d~~~~~~~g~l~i~d~~~~~~~~~ 99 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSF---GWDLEVYIEKGKLAILDAFLSEKGLV 99 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHc---CCCHHHHhhcCCEEEEEccccccccc
Confidence 345677778899999999999999999999999999988877776654432 21221 000 00000110 00000
Q ss_pred -CcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 82 -MSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 82 -~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
...........+...+.++.++.+++.+|.|....
T Consensus 100 ~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~ 135 (260)
T COG0467 100 SIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITE 135 (260)
T ss_pred cccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCch
Confidence 00000113344677888888888899999998763
No 270
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=52.28 E-value=62 Score=33.21 Aligned_cols=91 Identities=10% Similarity=0.023 Sum_probs=53.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
++|||++..+++.| .|++.|++.|++|.++..+.+.....-. . .+..+.
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~~~Npg~~~~a---------~-~~~~~~---------------- 50 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIGHENPSIKKLS---------K-KYLFYD---------------- 50 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEECCCChhhhhcc---------c-ceeecC----------------
Confidence 57899988888777 5788898889887777443221100000 0 011110
Q ss_pred HHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHH---HHcCCCeEEE
Q 048562 87 RTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVI---NSMNIPRIVF 132 (464)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A---~~~giP~v~~ 132 (464)
. .-.+.+.+++++.++|+||...-......++ +..|+|++.-
T Consensus 51 --~--~d~e~l~~~~~~~~id~Vi~~~d~~l~~~~~~~l~~~Gi~v~gp 95 (435)
T PRK06395 51 --E--KDYDLIEDFALKNNVDIVFVGPDPVLATPLVNNLLKRGIKVASP 95 (435)
T ss_pred --C--CCHHHHHHHHHHhCCCEEEECCChHHHHHHHHHHHHCCCcEECC
Confidence 0 1136677888889999999975433222222 3558887654
No 271
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=52.18 E-value=72 Score=30.82 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKH 46 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 46 (464)
+..|.+...++.|--.-+..++..|.++|+.|.++.....
T Consensus 34 ~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 34 AHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4556666677999999999999999999999999886643
No 272
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=52.03 E-value=22 Score=33.56 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=39.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
...++|+..+|.|-..=..+||.+|.++|+.|+|++.+.....+...
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 44688888888888888999999999889999999998766555543
No 273
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=52.00 E-value=1.2e+02 Score=31.42 Aligned_cols=94 Identities=10% Similarity=0.104 Sum_probs=53.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
..|++++..+ ...+++++.|.+.|-+|..+........-........ +....++.
T Consensus 324 Gk~vaI~~~~-----~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~--~~~~~v~~------------------ 378 (475)
T PRK14478 324 GKRVLLYTGG-----VKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELM--GPDAHMID------------------ 378 (475)
T ss_pred CCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHc--CCCcEEEe------------------
Confidence 3566664433 3455788888889999987765433221111110000 00111100
Q ss_pred HHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEE
Q 048562 87 RTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVF 132 (464)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~ 132 (464)
..-...+.+.+++.+||++|.. .....+|+++|||++..
T Consensus 379 ----d~~~~e~~~~i~~~~pDliig~---s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 379 ----DANPRELYKMLKEAKADIMLSG---GRSQFIALKAGMPWLDI 417 (475)
T ss_pred ----CCCHHHHHHHHhhcCCCEEEec---CchhhhhhhcCCCEEEc
Confidence 0113455567778899999997 34567899999999844
No 274
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=51.22 E-value=1.1e+02 Score=30.74 Aligned_cols=95 Identities=14% Similarity=0.122 Sum_probs=56.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC-CcEEEEeCC-cchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHG-AKSTIITSP-KHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSA 84 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rG-h~Vt~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (464)
|++|+++..|..|+ .+|.-|+++| ++|++++-. ...+.+.... +..++...++..
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~~~------~~~v~~~~vD~~------------ 57 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAELI------GGKVEALQVDAA------------ 57 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHhhc------cccceeEEeccc------------
Confidence 67899988766665 5789999999 999999865 3334443320 123444444210
Q ss_pred cHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch---hhHHHHHHcCCCeEEEec
Q 048562 85 TPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH---WSADVINSMNIPRIVFNG 134 (464)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~---~~~~~A~~~giP~v~~~~ 134 (464)
-.+++.++|++. |+||.=.-.+ ..+.+|-..|++++-++-
T Consensus 58 --------d~~al~~li~~~--d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 58 --------DVDALVALIKDF--DLVINAAPPFVDLTILKACIKTGVDYVDTSY 100 (389)
T ss_pred --------ChHHHHHHHhcC--CEEEEeCCchhhHHHHHHHHHhCCCEEEccc
Confidence 134566666655 6666544322 344466667777776644
No 275
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=51.18 E-value=29 Score=30.15 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=29.2
Q ss_pred EEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEcc
Q 048562 254 VLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGK 290 (464)
Q Consensus 254 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~ 290 (464)
.+|+++||....+.+.++..+.++.+.+..-|+.++.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~S~ 39 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAVSP 39 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEecc
Confidence 6999999999877778899999998877644555443
No 276
>PRK08760 replicative DNA helicase; Provisional
Probab=51.15 E-value=56 Score=33.96 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=33.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCcEEEEeCCcchhhhh
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAA-HGAKSTIITSPKHALSFQ 51 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~~~~~~~ 51 (464)
+++..-|+.|-..-.+.+|...+. .|+.|.|++.+...+.+.
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~ 274 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLA 274 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHH
Confidence 566667799999999999998875 599999998876654433
No 277
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=50.44 E-value=1.5e+02 Score=27.90 Aligned_cols=92 Identities=13% Similarity=0.160 Sum_probs=57.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
+++|+++..- .=...|++.|...++.+++.+...+-...... .+ . .... .+
T Consensus 2 ~~~ilvlGGT-----~Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~------~~-~---~~~~----------G~---- 52 (257)
T COG2099 2 MMRILLLGGT-----SDARALAKKLAAAPVDIILSSLTGYGAKLAEQ------IG-P---VRVG----------GF---- 52 (257)
T ss_pred CceEEEEecc-----HHHHHHHHHhhccCccEEEEEcccccccchhc------cC-C---eeec----------Cc----
Confidence 4566665443 23578999999999888777665443222211 01 1 1110 00
Q ss_pred HHHHhhhHHHHHHhhhhCCCCEEEeCCCch------hhHHHHHHcCCCeEEE
Q 048562 87 RTDTSMLQEPLKSLLVDSRPDCIVHDMFHH------WSADVINSMNIPRIVF 132 (464)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~------~~~~~A~~~giP~v~~ 132 (464)
.-.+.+.++|++.+.|+||=-.+-+ -+..+|+..|||++.+
T Consensus 53 -----l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 53 -----LGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred -----CCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 1257888999999999987443321 2567889999999998
No 278
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=50.20 E-value=1.7e+02 Score=27.99 Aligned_cols=42 Identities=17% Similarity=0.172 Sum_probs=33.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
+++|+++..|..|. .+|+.|+++||.|.++..+...+.....
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 67889998887776 5899999999999999888776555443
No 279
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=50.08 E-value=74 Score=32.41 Aligned_cols=42 Identities=14% Similarity=0.076 Sum_probs=34.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEeCCcchhhhh
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFA-AHGAKSTIITSPKHALSFQ 51 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~~ 51 (464)
+++...|+.|-..-++.+|..++ +.|+.|.|++.+...+.+.
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~ 239 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLG 239 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHH
Confidence 46666779999999999998887 6799999999876654443
No 280
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=49.79 E-value=29 Score=34.05 Aligned_cols=45 Identities=11% Similarity=0.224 Sum_probs=33.3
Q ss_pred HHhhhHHHHHHhhhhCCCCEEEeCCCch-------hh---HHHHHHcCCCeEEEe
Q 048562 89 DTSMLQEPLKSLLVDSRPDCIVHDMFHH-------WS---ADVINSMNIPRIVFN 133 (464)
Q Consensus 89 ~~~~~~~~l~~~l~~~~pD~Vi~D~~~~-------~~---~~~A~~~giP~v~~~ 133 (464)
..+...+.+.+++++.+||+||+.+.+. |+ ..+.+.++||.++-.
T Consensus 64 n~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 64 NKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 3445678888999999999999998653 21 224557999999753
No 281
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=49.53 E-value=1.4e+02 Score=30.76 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=28.3
Q ss_pred HHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEe
Q 048562 94 QEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFN 133 (464)
Q Consensus 94 ~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~ 133 (464)
...+.+.+++.+||++|... ....+|+++|+|++.+.
T Consensus 384 ~~e~~~~i~~~~pDl~ig~~---~~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 384 PRELLKLLLEYKADLLIAGG---KERYTALKLGIPFCDIN 420 (456)
T ss_pred HHHHHHHHhhcCCCEEEEcc---chHHHHHhcCCCEEEcc
Confidence 34566778888999999862 34567889999998763
No 282
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=49.34 E-value=26 Score=33.09 Aligned_cols=118 Identities=12% Similarity=0.079 Sum_probs=62.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCC---CCCCCCc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIE---IPDTDMS 83 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~ 83 (464)
..+|.+.-.|+-|-=.-.-.|++.|.++||+|-+++-++.....-.... |..++...+...+++- ......
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL-----GDRiRM~~~~~d~~vfIRS~atRG~- 102 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL-----GDRIRMQELSRDPGVFIRSMATRGS- 102 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-------GGGCHHHHTSTTEEEEEE---SS-
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc-----ccHHHhcCcCCCCCEEEeecCcCCC-
Confidence 4567788888999999999999999999999999876544322111100 2222222221111100 111111
Q ss_pred ccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch--hhHHHHHHcCCCeEEEe
Q 048562 84 ATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH--WSADVINSMNIPRIVFN 133 (464)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~--~~~~~A~~~giP~v~~~ 133 (464)
.-...........+++...+|+||.+-.-. .-..++....+-++.+.
T Consensus 103 ---lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~ 151 (266)
T PF03308_consen 103 ---LGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLV 151 (266)
T ss_dssp ---HHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEE
T ss_pred ---CCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEec
Confidence 112222244455778889999999996543 34556666665555553
No 283
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=49.30 E-value=1.2e+02 Score=31.09 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=61.9
Q ss_pred CcEEEEEcCC-CccCHHHHHHHHHHHHhCCCcEEEEeC-CcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcc
Q 048562 7 PVEMFFFPYV-GGGHQIPMVDIARIFAAHGAKSTIITS-PKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSA 84 (464)
Q Consensus 7 ~~~vl~~~~~-~~GH~~p~l~la~~L~~rGh~Vt~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (464)
|.++++.... +.|-..-.+.|++.|.++|.+|..+=+ +.+.+...-. .. .|... ..+ .++ +.
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~iD~~~~~--~~--~g~~~--~nl--------d~~-~~- 64 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGPDFIDPSHHE--AV--AGRPS--RTL--------DPW-LS- 64 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCCCHHHHH--HH--hCCCc--ccC--------Chh-hC-
Confidence 3457666665 889999999999999999999976633 3332211000 00 01111 011 110 00
Q ss_pred cHHHHHhhhHHHHHHhhhhCCCCEEEeCCCc-------hhhHHHHHHcCCCeEEEeccc
Q 048562 85 TPRTDTSMLQEPLKSLLVDSRPDCIVHDMFH-------HWSADVINSMNIPRIVFNGNC 136 (464)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~-------~~~~~~A~~~giP~v~~~~~~ 136 (464)
. .+.+++.+.....|++|++... .....+|+.+++|+|.+....
T Consensus 65 ----~----~~~i~~~~~~~~~d~~vIEG~gGl~dg~~~s~adla~~l~~PviLVv~~~ 115 (433)
T PRK13896 65 ----G----EDGMRRNYYRGEGDICVVEGVMGLYDGDVSSTAMVAEALDLPVVLVVDAK 115 (433)
T ss_pred ----C----HHHHHHHHHhhcCCEEEEECCCccccCCCCCHHHHHHHHCCCEEEEEcCc
Confidence 0 1223333334458999988731 247889999999999987654
No 284
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=49.09 E-value=1.1e+02 Score=31.51 Aligned_cols=104 Identities=9% Similarity=0.102 Sum_probs=59.6
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHH
Q 048562 10 MFFFPYV-GGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRT 88 (464)
Q Consensus 10 vl~~~~~-~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (464)
+++.... +-|-..-+..|++.|+++|++|..+=+.. +.+....... ..|... .. ... +..
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~--d~~D~~~~~~-~~g~~~--~~--------ld~------~~~ 62 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGP--DYIDPMFHTQ-ATGRPS--RN--------LDS------FFM 62 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCC--CCCCHHHHHH-HhCCch--hh--------CCc------ccC
Confidence 5555444 67889999999999999999999885421 1111110000 001000 00 000 001
Q ss_pred HHhhhHHHHHHhhhh--CCCCEEEeCCCc------------hhhHHHHHHcCCCeEEEeccc
Q 048562 89 DTSMLQEPLKSLLVD--SRPDCIVHDMFH------------HWSADVINSMNIPRIVFNGNC 136 (464)
Q Consensus 89 ~~~~~~~~l~~~l~~--~~pD~Vi~D~~~------------~~~~~~A~~~giP~v~~~~~~ 136 (464)
. .+.+.+.+.+ .+.|++|++... .....+|+.++.|+|.+....
T Consensus 63 ~----~~~i~~~~~~~~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 63 S----EAQIQECFHRHSKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred C----HHHHHHHHHHhcccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 1 2233333332 468999987651 137789999999999998765
No 285
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=48.56 E-value=1.7e+02 Score=26.21 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=55.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCc-chhhhhhhhhhc-cCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPK-HALSFQKSINRN-QQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~-~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
+++...++.|=..-++.++..+.++|..|.|+.... ..+++....... ...-..+.+... ..+.
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~--------------~~~~ 80 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEV--------------FDFD 80 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEEC--------------CCHH
Confidence 466667799999999999999999999999999975 333333321110 000011211111 0111
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
........+.+.+.+.++++||.|....
T Consensus 81 -~~~~~~~~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 81 -EQGVAIQKTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred -HHHHHHHHHHHHHhhcCccEEEEeCcHH
Confidence 1122344555666667899999997764
No 286
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=48.39 E-value=1.7e+02 Score=25.21 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=70.4
Q ss_pred EEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHH
Q 048562 254 VLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLL 333 (464)
Q Consensus 254 ~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~ 333 (464)
.|.|-+||.. +....+++...|++.+..+-..+..- ++ .|+.+.+ |+..
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa------HR--------~p~~l~~-------------~~~~-- 50 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA------HR--------TPERLLE-------------FVKE-- 50 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T------TT--------SHHHHHH-------------HHHH--
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec------cC--------CHHHHHH-------------HHHH--
Confidence 4666677776 56778888888888886665555432 11 3332221 1111
Q ss_pred HhcccCceeeccccchh----hHHHHHHcCCceeecccccccchhHHH---HHh-hhcceEEeccccccCCCCCCCCccC
Q 048562 334 ILEHTAVGGFMTHCGWN----STLESVSAGVPMVTWPITAEQFSNEKL---ISD-VLKIGVKVGSVNWVSWSTEPSAAVG 405 (464)
Q Consensus 334 lL~~~~~~~~ItHGG~~----s~~Eal~~GvP~v~~P~~~DQ~~na~~---v~~-~~G~G~~l~~~~~~~~~~~~~~~~~ 405 (464)
+.+-.+++||.=.|.. ++.-++- -.|+|.+|....+.....- +.+ =.|++...-.- ++..+
T Consensus 51 -~~~~~~~viIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i---------~~~~n 119 (150)
T PF00731_consen 51 -YEARGADVIIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI---------NNGFN 119 (150)
T ss_dssp -TTTTTESEEEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS---------THHHH
T ss_pred -hccCCCEEEEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc---------cCchH
Confidence 1111223477777643 4444444 7999999987775543332 211 12444333110 01344
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 048562 406 RDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKN 439 (464)
Q Consensus 406 ~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~ 439 (464)
+.-+...|-.+ .|+ .++++.+..+++.++
T Consensus 120 AA~~A~~ILa~-~d~----~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 120 AALLAARILAL-KDP----ELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHT-T-H----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCH----HHHHHHHHHHHHHHc
Confidence 45555444443 334 788888888887764
No 287
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=48.34 E-value=40 Score=32.75 Aligned_cols=36 Identities=11% Similarity=0.001 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
+.++||+++-.|+.| ..+|..|++.||+|++++...
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 456789999877766 457888999999999998765
No 288
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.34 E-value=1.1e+02 Score=31.31 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
+..+++++. .|++ - +.+|+.|+++||+|+++....
T Consensus 4 ~~k~v~iiG---~g~~-G-~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVG---AGVS-G-LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEEC---CCHH-H-HHHHHHHHHCCCEEEEEeCCc
Confidence 456777763 3342 2 499999999999999886643
No 289
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=48.13 E-value=1.1e+02 Score=29.70 Aligned_cols=95 Identities=11% Similarity=-0.050 Sum_probs=55.2
Q ss_pred CcEEE-EecCCCCC--CCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCc
Q 048562 252 NSVLY-ISFGSLAR--LSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGW 328 (464)
Q Consensus 252 ~~~V~-vs~GS~~~--~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~ 328 (464)
++.|. +..||... .+.+.+.++++.+.+.+.++++..+.. .+. + .-+.+.+. ..++.+.+-
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~----------~e~-~-~~~~i~~~----~~~~~l~g~ 241 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAE----------HEE-Q-RAKRLAEG----FPYVEVLPK 241 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCH----------HHH-H-HHHHHHcc----CCcceecCC
Confidence 34554 44444432 788899999998877777776654442 110 0 11111111 223333332
Q ss_pred --cc-HHHHhcccCceeeccccchhhHHHHHHcCCceeec
Q 048562 329 --AP-QLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTW 365 (464)
Q Consensus 329 --vp-q~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~ 365 (464)
+. -..++.++++ ||+.- .|.+.=|...|+|+|++
T Consensus 242 ~sL~elaali~~a~l--~I~nD-SGp~HlA~A~g~p~val 278 (322)
T PRK10964 242 LSLEQVARVLAGAKA--VVSVD-TGLSHLTAALDRPNITL 278 (322)
T ss_pred CCHHHHHHHHHhCCE--EEecC-CcHHHHHHHhCCCEEEE
Confidence 22 4567888887 88764 45677778889999986
No 290
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=47.80 E-value=2e+02 Score=25.49 Aligned_cols=102 Identities=12% Similarity=0.076 Sum_probs=60.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCC-----cchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCC
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSP-----KHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDT 80 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (464)
.+--|.+++..+.|-..-.+.+|-+-+-+|.+|.++-.- ..+..+.+. -.++.+.....+..+.. .
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~-------~~~v~~~~~g~~~~~~~--~ 90 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQL-------GQNLDWVRCDLPRCLDT--P 90 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHh-------CCCcEEEECCCCCeeeC--C
Confidence 345578888889999988888888888888899887421 222222222 12455555432111111 1
Q ss_pred CCcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 81 DMSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
.....-...........++.+.+..+|+||.|....
T Consensus 91 ~~~~~~~~~~~~~~~~a~~~l~~~~~dlvVLDEi~~ 126 (178)
T PRK07414 91 HLDESEKKALQELWQYTQAVVDEGRYSLVVLDELSL 126 (178)
T ss_pred CcCHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhHH
Confidence 111122233334456677778889999999997654
No 291
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=47.60 E-value=65 Score=31.26 Aligned_cols=33 Identities=0% Similarity=-0.047 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC--CCcEEEEeCCc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAH--GAKSTIITSPK 45 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~ 45 (464)
|+|||+...++. + ++++.|.+. ||+|..+....
T Consensus 1 ~~~vLv~g~~~~-~-----~~~~~l~~~~~g~~vi~~d~~~ 35 (326)
T PRK12767 1 MMNILVTSAGRR-V-----QLVKALKKSLLKGRVIGADISE 35 (326)
T ss_pred CceEEEecCCcc-H-----HHHHHHHHhccCCEEEEECCCC
Confidence 688999988533 2 789999998 49988776553
No 292
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=47.59 E-value=31 Score=31.78 Aligned_cols=27 Identities=11% Similarity=-0.020 Sum_probs=20.4
Q ss_pred CcEEEEEcCCCcc--CHHHHHHHHHHHHh
Q 048562 7 PVEMFFFPYVGGG--HQIPMVDIARIFAA 33 (464)
Q Consensus 7 ~~~vl~~~~~~~G--H~~p~l~la~~L~~ 33 (464)
|+|||+..++-.| -+||...++++|..
T Consensus 1 m~~ILvTGF~PFgg~~~NPS~~~v~~L~~ 29 (222)
T PRK13195 1 MSKVLVTGFGPYGVTPVNPAQLTAEELDG 29 (222)
T ss_pred CCEEEEeeecCCCCCCcCchHHHHHhccc
Confidence 5778888877333 48999999999853
No 293
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=46.86 E-value=91 Score=31.88 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=34.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCcEEEEeCCcchhhhhh
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAA-HGAKSTIITSPKHALSFQK 52 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~~~~~~~~ 52 (464)
+++...|+.|-..-++.+|..++. .|+.|.|++.+...+.+..
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHH
Confidence 566667799999999999998875 6999999998866655443
No 294
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=46.67 E-value=40 Score=32.33 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=53.3
Q ss_pred CCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeec
Q 048562 265 LSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFM 344 (464)
Q Consensus 265 ~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~I 344 (464)
...+..+.+.+|+.+...+.||...+. + . -.++.++++...+-++|+. ||
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG------~----g------------------a~rlL~~ld~~~~~~~pK~--~i 95 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGG------Y----G------------------ANRLLPYLDYDLIRANPKI--FV 95 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCc------C----C------------------HHHhhhhCCHHHHhhCCeE--EE
Confidence 456778889999999999999999776 1 1 1234456666666567766 88
Q ss_pred cccchhhHHHHHHc--CCceeecccc
Q 048562 345 THCGWNSTLESVSA--GVPMVTWPIT 368 (464)
Q Consensus 345 tHGG~~s~~Eal~~--GvP~v~~P~~ 368 (464)
=.....++.-+++. |++.+--|..
T Consensus 96 GySDiTaL~~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 96 GYSDITALHLALYAKTGLVTFHGPML 121 (282)
T ss_pred EecHHHHHHHHHHHhcCceEEECccc
Confidence 88888878777754 7777777753
No 295
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=46.56 E-value=92 Score=30.87 Aligned_cols=26 Identities=19% Similarity=0.320 Sum_probs=23.0
Q ss_pred cCceeeccccchhh---HHHHHHcCCceeec
Q 048562 338 TAVGGFMTHCGWNS---TLESVSAGVPMVTW 365 (464)
Q Consensus 338 ~~~~~~ItHGG~~s---~~Eal~~GvP~v~~ 365 (464)
|++ +|++||.-| +..|...|+|+++.
T Consensus 92 Pdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 92 PDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred CCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 666 999999986 89999999999874
No 296
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=46.42 E-value=42 Score=30.68 Aligned_cols=98 Identities=12% Similarity=0.141 Sum_probs=60.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEeCCcchhhhhhhhhhccCCCC---------CeEEEEecCCCCCC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAH-GAKSTIITSPKHALSFQKSINRNQQSGL---------PITIKTLHLPDDIE 76 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~---------~~~~~~~~~~~~~~ 76 (464)
..-+++...++.|-..-++.++.+-+++ |..|.|++.....+.+....... |. .+.+....
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~---g~d~~~~~~~g~l~~~d~~------ 89 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSF---GWDLEEYEDSGKLKIIDAF------ 89 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTT---TS-HHHHHHTTSEEEEESS------
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHc---CCcHHHHhhcCCEEEEecc------
Confidence 3457777788999999999999888888 99999999887766655543322 21 12222211
Q ss_pred CCCCCCcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 77 IPDTDMSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
....... ......+...+.+.+++.+++.||.|....
T Consensus 90 --~~~~~~~-~~~~~~l~~~i~~~i~~~~~~~vVIDsls~ 126 (226)
T PF06745_consen 90 --PERIGWS-PNDLEELLSKIREAIEELKPDRVVIDSLSA 126 (226)
T ss_dssp --GGGST-T-SCCHHHHHHHHHHHHHHHTSSEEEEETHHH
T ss_pred --ccccccc-ccCHHHHHHHHHHHHHhcCCCEEEEECHHH
Confidence 0000000 112334567777788888899999997543
No 297
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=45.92 E-value=90 Score=31.97 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=35.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEeCCcchhhh
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFA-AHGAKSTIITSPKHALSF 50 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~ 50 (464)
.-++++..+|.|-..-+..||..|. ++|+.|.+++.+.+....
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a 143 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAA 143 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHH
Confidence 3456666779999999999999997 589999999998776443
No 298
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=45.74 E-value=15 Score=31.73 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=26.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
||.++..|.+|+ .+|..|.++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 466666666655 78999999999999999875
No 299
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=45.61 E-value=1.6e+02 Score=31.05 Aligned_cols=36 Identities=11% Similarity=0.291 Sum_probs=28.9
Q ss_pred HHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEe
Q 048562 95 EPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFN 133 (464)
Q Consensus 95 ~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~ 133 (464)
..+.+.+++.+||+||.+. ....+|+++|+|++.++
T Consensus 352 ~el~~~i~~~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 352 LEVEDAIAEAAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHHhcCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 4667788888999999875 35558889999998873
No 300
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=45.60 E-value=1.1e+02 Score=27.06 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=49.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcc-----hhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCC
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKH-----ALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDM 82 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (464)
-.|.+++..+.|-....+.+|-+-+-+|.+|.++-.-.. +..+.+.. .++.+..... ++.......
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l-------~~~~~~~~g~--~f~~~~~~~ 74 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKL-------PNVEIERFGK--GFVWRMNEE 74 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGG-------T--EEEE--T--T----GGGH
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhC-------CeEEEEEcCC--cccccCCCc
Confidence 347778888999988888888888888899988853222 11222221 1355555431 221111000
Q ss_pred cccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 83 SATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
... ...........++.+.+..+|+||.|....
T Consensus 75 ~~~-~~~~~~~~~~a~~~i~~~~~dlvILDEi~~ 107 (172)
T PF02572_consen 75 EED-RAAAREGLEEAKEAISSGEYDLVILDEINY 107 (172)
T ss_dssp HHH-HHHHHHHHHHHHHHTT-TT-SEEEEETHHH
T ss_pred HHH-HHHHHHHHHHHHHHHhCCCCCEEEEcchHH
Confidence 000 223333456666777788999999997654
No 301
>PRK08506 replicative DNA helicase; Provisional
Probab=45.55 E-value=1e+02 Score=32.09 Aligned_cols=43 Identities=7% Similarity=-0.025 Sum_probs=35.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhh
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQK 52 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (464)
+++...|+.|-..-.+.+|...+++|+.|.|++.+...+.+..
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~ 237 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLML 237 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHH
Confidence 5666677999999999999999889999999988766544443
No 302
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=45.53 E-value=25 Score=31.47 Aligned_cols=39 Identities=15% Similarity=-0.020 Sum_probs=31.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcch
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHA 47 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 47 (464)
||++--.|+.|=+.-.+.+.+.|.+.|++|.++.++...
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 677777766666666679999999999999999887554
No 303
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=45.53 E-value=2e+02 Score=29.14 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=27.4
Q ss_pred HHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEE
Q 048562 95 EPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVF 132 (464)
Q Consensus 95 ~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~ 132 (464)
..+.+.+++.+||++|.... ...+|+++|+|++..
T Consensus 346 ~e~~~~i~~~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 346 RELKKLLKEKKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHHhhcCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 45567778889999999944 346788999999865
No 304
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=44.96 E-value=1.6e+02 Score=30.24 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
..|+.+...+ .....+++.|.+.|-+|..+......+..... ... ...
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~-------~~~-----------------~~~--- 358 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQKL-------PVE-----------------TVV--- 358 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhC-------CcC-----------------cEE---
Confidence 3566655422 46678888888888888777665442221110 000 000
Q ss_pred HHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEE
Q 048562 87 RTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVF 132 (464)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~ 132 (464)
..+ ...+.+++++.++|++|.... ...+|+++|+|++.+
T Consensus 359 ~~D----~~~l~~~i~~~~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 359 IGD----LEDLEDLACAAGADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred eCC----HHHHHHHHhhcCCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 001 135567888889999998853 466899999999987
No 305
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=44.83 E-value=1e+02 Score=28.42 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=37.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
..-+++.-.++.|-...++.++..+.++|..+.+++.....+.+.+.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~ 70 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQ 70 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Confidence 34567777779999999999999999999999999987665444443
No 306
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=44.39 E-value=30 Score=31.48 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=32.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 44 (464)
|+-|++..+|+.|-....-.||++|.+++|+|...+..
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 45577888999999999999999999999998866654
No 307
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=44.05 E-value=93 Score=30.71 Aligned_cols=99 Identities=9% Similarity=0.092 Sum_probs=58.9
Q ss_pred CcEEEEecCCCCC---CCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCc
Q 048562 252 NSVLYISFGSLAR---LSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGW 328 (464)
Q Consensus 252 ~~~V~vs~GS~~~---~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~ 328 (464)
++.|.+..|+... .+.+.+.++++.|.+.+.++++..++. +.... ..+.+.+... .+..+...+-
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~----------e~e~~-~~~~i~~~~~-~~~~~~l~g~ 250 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPD----------KDDLA-CVNEIAQGCQ-TPPVTALAGK 250 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCC----------hHHHH-HHHHHHHhcC-CCccccccCC
Confidence 4688888888643 678899999999987788877665543 11000 1111221111 0111222232
Q ss_pred --cc-HHHHhcccCceeeccccchhhHHHHHHcCCceeec
Q 048562 329 --AP-QLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTW 365 (464)
Q Consensus 329 --vp-q~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~ 365 (464)
+. -..++.++++ ||++- .|-+.=|.+.|+|+|++
T Consensus 251 ~sL~el~ali~~a~l--~v~nD-SGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 251 TTFPELGALIDHAQL--FIGVD-SAPAHIAAAVNTPLICL 287 (352)
T ss_pred CCHHHHHHHHHhCCE--EEecC-CHHHHHHHHcCCCEEEE
Confidence 22 4567888887 88764 45566677889999876
No 308
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=44.05 E-value=47 Score=29.24 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=22.6
Q ss_pred cccCceeeccccchhhHHHHHHcCCceeeccccc
Q 048562 336 EHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITA 369 (464)
Q Consensus 336 ~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~ 369 (464)
.+..++++|++||...+..... ++|+|-++..+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 4455666999999999999877 99999999754
No 309
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=44.02 E-value=29 Score=32.11 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCcEEEEeCC
Q 048562 24 MVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 24 ~l~la~~L~~rGh~Vt~~~~~ 44 (464)
-..||++|.++||+|+++...
T Consensus 29 G~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 29 GKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHHhCCCEEEEEECc
Confidence 367889999999999998754
No 310
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=44.00 E-value=1.1e+02 Score=25.45 Aligned_cols=45 Identities=9% Similarity=0.027 Sum_probs=35.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
+|++-+..+-+|-.----++..|..+|++|...+.....+.+...
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~a 45 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDA 45 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 477888889999888878888999999999998876554444443
No 311
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=43.97 E-value=61 Score=31.74 Aligned_cols=47 Identities=13% Similarity=0.272 Sum_probs=39.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
+--|||+..-|.|-..-.-.||..|.+.|+.|.++....|+.-...+
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQ 185 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQ 185 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHH
Confidence 44567777889999999999999999999999999999887554443
No 312
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=43.86 E-value=1.8e+02 Score=33.70 Aligned_cols=45 Identities=7% Similarity=0.073 Sum_probs=32.8
Q ss_pred CCCCCCCcEEEEEcCCCc--cCH----HHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 1 MDSKSSPVEMFFFPYVGG--GHQ----IPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 1 m~~~~~~~~vl~~~~~~~--GH~----~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
|.......|||++..+.. |+. +....++++|.+.||+|.++.+..
T Consensus 1 m~~~~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np 51 (1068)
T PRK12815 1 MPKDTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNP 51 (1068)
T ss_pred CCCCCCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCc
Confidence 443344578999987743 432 267789999999999999887654
No 313
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=43.76 E-value=1.1e+02 Score=26.57 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=27.6
Q ss_pred ccHHHHhcccCceeeccccchhhHHH---HHHcCCceeeccc
Q 048562 329 APQLLILEHTAVGGFMTHCGWNSTLE---SVSAGVPMVTWPI 367 (464)
Q Consensus 329 vpq~~lL~~~~~~~~ItHGG~~s~~E---al~~GvP~v~~P~ 367 (464)
.+...++...+...++--||.||+.| ++.+++|+++++.
T Consensus 82 ~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 82 FARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred chHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 44666555544445667789887765 5889999999885
No 314
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=43.65 E-value=52 Score=30.53 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=40.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
|.+|.++--++.|--.-...++.+|++.||+|..++.++..+.....
T Consensus 1 mr~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~L 47 (278)
T COG1348 1 MRQIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLL 47 (278)
T ss_pred CceEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHH
Confidence 56899999999999999999999999999999999988877665443
No 315
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=43.54 E-value=71 Score=30.08 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=34.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEeCCcchhhhh
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAH-GAKSTIITSPKHALSFQ 51 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~~~ 51 (464)
-+++...++.|--.-++.++..++.. |+.|.|++.+...+.+.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~ 75 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTA 75 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHH
Confidence 35666677999999999999999887 99999999876554443
No 316
>PRK06321 replicative DNA helicase; Provisional
Probab=43.41 E-value=1.1e+02 Score=31.81 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=33.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEeCCcchhhh
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFA-AHGAKSTIITSPKHALSF 50 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~ 50 (464)
+++..-|+.|-..-.+.||...+ +.|..|.|++-+-..+.+
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 56677789999999999999987 459999999887655443
No 317
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=43.30 E-value=25 Score=31.26 Aligned_cols=43 Identities=9% Similarity=0.100 Sum_probs=31.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhh
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQK 52 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (464)
||++...|+-|- +-...+.+.|.++|++|.++.++.....+..
T Consensus 1 ~illgvtGsiaa-~ka~~lir~L~~~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 1 RIVVAMTGASGV-IYGIRLLEVLKEAGVEVHLVISDWAKETIKY 43 (181)
T ss_pred CEEEEEECHHHH-HHHHHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 355555555554 4458999999999999999999877666543
No 318
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=43.27 E-value=2.5e+02 Score=25.30 Aligned_cols=103 Identities=12% Similarity=0.143 Sum_probs=54.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCcEEEEeCCc-chhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcc
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAH--GAKSTIITSPK-HALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSA 84 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (464)
+||+++.++..+-+.-+ +++...- ..+|..+.++. ..--+++... .++....+. . ..+.
T Consensus 1 ~ki~VlaSG~GSNlqai---ida~~~~~~~a~i~~Visd~~~A~~lerA~~------~gIpt~~~~------~---k~~~ 62 (200)
T COG0299 1 KKIAVLASGNGSNLQAI---IDAIKGGKLDAEIVAVISDKADAYALERAAK------AGIPTVVLD------R---KEFP 62 (200)
T ss_pred CeEEEEEeCCcccHHHH---HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHH------cCCCEEEec------c---ccCC
Confidence 46788888777765544 4444422 35676665543 3222222211 134333321 0 0111
Q ss_pred cHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch-hhHHHHHHcCCCeEEE
Q 048562 85 TPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH-WSADVINSMNIPRIVF 132 (464)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~-~~~~~A~~~giP~v~~ 132 (464)
.-..+...+.+.|++.+||+|+.-.++- .+..+...+.-..+-+
T Consensus 63 ----~r~~~d~~l~~~l~~~~~dlvvLAGyMrIL~~~fl~~~~grIlNI 107 (200)
T COG0299 63 ----SREAFDRALVEALDEYGPDLVVLAGYMRILGPEFLSRFEGRILNI 107 (200)
T ss_pred ----CHHHHHHHHHHHHHhcCCCEEEEcchHHHcCHHHHHHhhcceEec
Confidence 2334577888999999999999998764 3343433333344443
No 319
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=42.81 E-value=98 Score=31.42 Aligned_cols=90 Identities=14% Similarity=0.086 Sum_probs=53.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
+||+++-.+..+| .|+++|.+-|+.+++++.+.+....... ...+.... .
T Consensus 1 ~kiliiG~G~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~-----------~----- 50 (423)
T TIGR00877 1 MKVLVIGNGGREH-----ALAWKLAQSPLVKYVYVAPGNAGTARLA---------KNKNVAIS-----------I----- 50 (423)
T ss_pred CEEEEECCChHHH-----HHHHHHHhCCCccEEEEECCCHHHhhhc---------ccccccCC-----------C-----
Confidence 4788888876644 6888888888887877665443221110 01111110 0
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCCCch---hhHHHHHHcCCCeEE
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDMFHH---WSADVINSMNIPRIV 131 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~---~~~~~A~~~giP~v~ 131 (464)
.-.+.+.+++++.++|+|+...-.. .....++.+|+|++.
T Consensus 51 ----~d~~~l~~~~~~~~id~vi~~~e~~l~~~~~~~l~~~gi~~~g 93 (423)
T TIGR00877 51 ----TDIEALVEFAKKKKIDLAVIGPEAPLVLGLVDALEEAGIPVFG 93 (423)
T ss_pred ----CCHHHHHHHHHHhCCCEEEECCchHHHHHHHHHHHHCCCeEEC
Confidence 0145566778888999999765332 234466677988764
No 320
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=42.79 E-value=1.8e+02 Score=25.02 Aligned_cols=39 Identities=13% Similarity=0.228 Sum_probs=33.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchh
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHAL 48 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 48 (464)
+++...++.|-......++..|.++|..|.++..+.+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 566777899999999999999999999999998876543
No 321
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=42.63 E-value=1.1e+02 Score=31.95 Aligned_cols=94 Identities=15% Similarity=0.073 Sum_probs=54.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCccc
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAH--GAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (464)
||||++..+++.| .|++.|++. |++|..+..+.+.....-. . ...-.++.++ ..
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~~Npg~~~~~-~-----~~~~~~~~~~-----------~~-- 56 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSYLNPGINSVV-K-----ATGGEYFIGN-----------IN-- 56 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECCCChhheeec-c-----cccCceEecC-----------CC--
Confidence 5899999888888 578888776 9998877553331110000 0 0000011110 00
Q ss_pred HHHHHhhhHHHHHHhhhhCCCCEEEeCCCch---hhHHHHHHcCCCeEEE
Q 048562 86 PRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH---WSADVINSMNIPRIVF 132 (464)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~---~~~~~A~~~giP~v~~ 132 (464)
-.+.+.+++++.++|+||...-.+ ..+...+.+|+|++.-
T Consensus 57 -------d~~~l~~~a~~~~id~Vi~g~E~~l~~glad~l~~~Gi~v~Gp 99 (486)
T PRK05784 57 -------SPEEVKKVAKEVNPDLVVIGPEEPLFAGVADVLREEGFPVFGA 99 (486)
T ss_pred -------CHHHHHHHHHHhCCCEEEECCchHHHHHHHHHHHhCCCCEECC
Confidence 023456777788999999965443 2345666789997653
No 322
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=42.59 E-value=48 Score=32.26 Aligned_cols=74 Identities=11% Similarity=-0.016 Sum_probs=52.5
Q ss_pred CCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeec
Q 048562 265 LSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFM 344 (464)
Q Consensus 265 ~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~I 344 (464)
...+....+.+|+.+...+.||.+.+. + . -.++.++++...+-.||+. ||
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG------~----g------------------~~rlL~~lD~~~i~~~PK~--fi 99 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGG------D----D------------------SNELLPYLDYELIKKNPKI--FI 99 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCcc------c----C------------------HhhhhhhcCHHHHhhCCCE--EE
Confidence 356778889999999999999999776 1 1 2235566666666667766 77
Q ss_pred cccchhhHHHHHH--cCCceeecccc
Q 048562 345 THCGWNSTLESVS--AGVPMVTWPIT 368 (464)
Q Consensus 345 tHGG~~s~~Eal~--~GvP~v~~P~~ 368 (464)
=.....++.-+++ +|++.+--|..
T Consensus 100 GySDiTaL~~al~~~~g~~t~hGp~~ 125 (308)
T cd07062 100 GYSDITALHLAIYKKTGLVTYYGPNL 125 (308)
T ss_pred eccHHHHHHHHHHHhcCCeEEECccc
Confidence 7777777777774 36766666654
No 323
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=42.16 E-value=2.6e+02 Score=25.19 Aligned_cols=146 Identities=11% Similarity=0.019 Sum_probs=74.7
Q ss_pred CCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCccc
Q 048562 251 TNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAP 330 (464)
Q Consensus 251 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vp 330 (464)
.+.+++|..|.++ ...++.|.+.+.++.++. +. +.+.+.+... ...+.......
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs-~~----------------~~~~l~~l~~--~~~i~~~~~~~ 63 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVIS-PE----------------LTENLVKLVE--EGKIRWKQKEF 63 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEc-CC----------------CCHHHHHHHh--CCCEEEEecCC
Confidence 4568888877765 334555666676655443 32 2222222221 22344433333
Q ss_pred HHHHhcccCceeeccccchhhHHHHHH----cCCceeecccccccchhHH-----HHHhhhcceEEeccccccCCCCCCC
Q 048562 331 QLLILEHTAVGGFMTHCGWNSTLESVS----AGVPMVTWPITAEQFSNEK-----LISDVLKIGVKVGSVNWVSWSTEPS 401 (464)
Q Consensus 331 q~~lL~~~~~~~~ItHGG~~s~~Eal~----~GvP~v~~P~~~DQ~~na~-----~v~~~~G~G~~l~~~~~~~~~~~~~ 401 (464)
+..-+..+++ +|.--+.-.+.+.++ .++++-+ .|.+..+. .+ ++-++-+.+... |..
T Consensus 64 ~~~~l~~adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~-----G~s-- 129 (202)
T PRK06718 64 EPSDIVDAFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTD-----GAS-- 129 (202)
T ss_pred ChhhcCCceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECC-----CCC--
Confidence 4445666666 776666555555544 4554433 34433322 22 222233333221 221
Q ss_pred CccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH
Q 048562 402 AAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKN 439 (464)
Q Consensus 402 ~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~ 439 (464)
-.-+..|++.|.+++ +++.+.+.+.+.++++.+++
T Consensus 130 -P~la~~lr~~ie~~~--~~~~~~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 130 -PKLAKKIRDELEALY--DESYESYIDFLYECRQKIKE 164 (202)
T ss_pred -hHHHHHHHHHHHHHc--chhHHHHHHHHHHHHHHHHH
Confidence 123355888888877 33455778888888888874
No 324
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=41.99 E-value=56 Score=29.97 Aligned_cols=27 Identities=7% Similarity=0.105 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCcc--CHHHHHHHHHHHHh
Q 048562 7 PVEMFFFPYVGGG--HQIPMVDIARIFAA 33 (464)
Q Consensus 7 ~~~vl~~~~~~~G--H~~p~l~la~~L~~ 33 (464)
|+|||+..+.-+| ..||.-.++++|..
T Consensus 1 m~~ILvTGF~PF~~~~~NPS~~~~~~L~~ 29 (215)
T PRK13197 1 MMKILVTGFDPFGGEKINPSWEAVKQLPG 29 (215)
T ss_pred CCEEEEeeccCCCCCCCCcHHHHHHHccc
Confidence 5678888877433 58999999999954
No 325
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=41.98 E-value=64 Score=30.91 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCcEEEEeCCcch
Q 048562 25 VDIARIFAAHGAKSTIITSPKHA 47 (464)
Q Consensus 25 l~la~~L~~rGh~Vt~~~~~~~~ 47 (464)
..+|..|+++|++|.++......
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 46888999999999999886554
No 326
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=41.92 E-value=1.2e+02 Score=28.60 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=35.8
Q ss_pred CCcEEEEEcC-CCccCHHHHHHHHHHHHhCCCcEEEEeCCcchh
Q 048562 6 SPVEMFFFPY-VGGGHQIPMVDIARIFAAHGAKSTIITSPKHAL 48 (464)
Q Consensus 6 ~~~~vl~~~~-~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 48 (464)
+..|..|+.. ++-|-..-...||-.|++.+|.|.++++.+...
T Consensus 17 ~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHN 60 (323)
T KOG2825|consen 17 TSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHN 60 (323)
T ss_pred ceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccc
Confidence 4567777764 489999999999999999999999999876543
No 327
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=41.89 E-value=42 Score=33.37 Aligned_cols=100 Identities=10% Similarity=0.160 Sum_probs=59.1
Q ss_pred CCcEEec-CcccHHHHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCC
Q 048562 320 KRGLIIR-GWAPQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWST 398 (464)
Q Consensus 320 ~~nv~v~-~~vpq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~ 398 (464)
..++... +..+-.++|..+++ +||-- ...+.|.+..+.|+|....-.|++.. .. |...+..+ .
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~------~r--g~~~~~~~---~-- 314 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEK------ER--GFYFDYEE---D-- 314 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTT------TS--SBSS-TTT---S--
T ss_pred CCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhh------cc--CCCCchHh---h--
Confidence 4566553 44567899999898 99987 45889999999999987655555522 22 22332210 0
Q ss_pred CCC-CccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Q 048562 399 EPS-AAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAK 438 (464)
Q Consensus 399 ~~~-~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~ 438 (464)
.++ ..-+.++|.++|..++++.+ .++++.++..+++-
T Consensus 315 ~pg~~~~~~~eL~~~i~~~~~~~~---~~~~~~~~~~~~~~ 352 (369)
T PF04464_consen 315 LPGPIVYNFEELIEAIENIIENPD---EYKEKREKFRDKFF 352 (369)
T ss_dssp SSS-EESSHHHHHHHHTTHHHHHH---HTHHHHHHHHHHHS
T ss_pred CCCceeCCHHHHHHHHHhhhhCCH---HHHHHHHHHHHHhC
Confidence 000 13467899999999987652 45566666666665
No 328
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=41.81 E-value=39 Score=34.25 Aligned_cols=48 Identities=8% Similarity=0.025 Sum_probs=38.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
++++||++...|+. ..+-...+.+.|.+.|++|.++.++.....+...
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~ 51 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTPL 51 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhHH
Confidence 45778888877655 5668899999999999999999988766665543
No 329
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=41.37 E-value=2.7e+02 Score=30.55 Aligned_cols=103 Identities=11% Similarity=0.186 Sum_probs=60.1
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 9 EMFFFPYV-GGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 9 ~vl~~~~~-~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
.+++.+.. ..|-..-++.|++.|.++|.+|.++=+-.... +... ... .+ ... ....
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~p-~~~~---------~~~--~~-------~~~-~~~~--- 60 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQPP-LTMS---------EVE--AL-------LAS-GQLD--- 60 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccCC-CCHH---------HHH--HH-------Hhc-cCCh---
Confidence 56666555 68889999999999999999999875421100 0000 000 00 000 0000
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCCCch---------hhHHHHHHcCCCeEEEeccc
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDMFHH---------WSADVINSMNIPRIVFNGNC 136 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~---------~~~~~A~~~giP~v~~~~~~ 136 (464)
..++.+...+.++ +.++|+||+|...+ ....+|+.++.|++.+....
T Consensus 61 ~~~~~I~~~~~~l--~~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 61 ELLEEIVARYHAL--AKDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred HHHHHHHHHHHHh--ccCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 1112223333322 25789999887542 24678999999999987654
No 330
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=40.87 E-value=20 Score=37.12 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=44.2
Q ss_pred eccccc---hhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcC
Q 048562 343 FMTHCG---WNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGT 419 (464)
Q Consensus 343 ~ItHGG---~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~ 419 (464)
+++-.+ .-++.||+++|.|+|+.= +-.-+..+ ...--|.-++.. .-....+++++.++..|
T Consensus 370 ~~qPa~E~FGiv~IEAMa~glPvvAt~----~GGP~EiV-~~~~tG~l~dp~-----------~e~~~~~a~~~~kl~~~ 433 (495)
T KOG0853|consen 370 LYQPANEHFGIVPIEAMACGLPVVATN----NGGPAEIV-VHGVTGLLIDPG-----------QEAVAELADALLKLRRD 433 (495)
T ss_pred EecCCCCCccceeHHHHhcCCCEEEec----CCCceEEE-EcCCcceeeCCc-----------hHHHHHHHHHHHHHhcC
Confidence 444444 247899999999999873 33334444 244457777553 33344799999999999
Q ss_pred ChHHHH
Q 048562 420 GEEAAE 425 (464)
Q Consensus 420 ~~~~~~ 425 (464)
++....
T Consensus 434 p~l~~~ 439 (495)
T KOG0853|consen 434 PELWAR 439 (495)
T ss_pred HHHHHH
Confidence 843333
No 331
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=40.69 E-value=50 Score=31.85 Aligned_cols=39 Identities=15% Similarity=0.178 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCC
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 44 (464)
+|.+|.|..-||-|-..-.+.||..|+++|++|.++-.+
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D 41 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 355666767779999999999999999999999999543
No 332
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=40.32 E-value=22 Score=30.83 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITS 43 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 43 (464)
|+||.|+-.+..| ..+|+.|.++||+|+++-.
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 6789998887555 4789999999999998753
No 333
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=40.30 E-value=2e+02 Score=27.71 Aligned_cols=102 Identities=7% Similarity=0.012 Sum_probs=57.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhC--CCcEEEEeCC-cch-hhhhhhhhhccCCCCCeEEEEecCCCCCCCCCC
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAAH--GAKSTIITSP-KHA-LSFQKSINRNQQSGLPITIKTLHLPDDIEIPDT 80 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~-~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (464)
.+++||+++..+..+.+ .+|.++.... +++|.++.++ ... ....+. ++.+..++.. .
T Consensus 87 ~~~~ri~vl~Sg~g~nl---~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~---------gIp~~~~~~~------~- 147 (286)
T PRK13011 87 AARPKVLIMVSKFDHCL---NDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWH---------GIPFHHFPIT------P- 147 (286)
T ss_pred ccCceEEEEEcCCcccH---HHHHHHHHcCCCCcEEEEEEECCccHHHHHHHh---------CCCEEEeCCC------c-
Confidence 46789999998864443 3444444333 6898887553 222 222222 5555554310 0
Q ss_pred CCcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch-hhHHHHHHcCCCeEEE
Q 048562 81 DMSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH-WSADVINSMNIPRIVF 132 (464)
Q Consensus 81 ~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~-~~~~~A~~~giP~v~~ 132 (464)
. ........+.+.|++.++|+++.-.|.. ....+.+.+.-..+-+
T Consensus 148 ---~----~~~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNi 193 (286)
T PRK13011 148 ---D----TKPQQEAQVLDVVEESGAELVVLARYMQVLSPELCRKLAGRAINI 193 (286)
T ss_pred ---C----chhhhHHHHHHHHHHhCcCEEEEeChhhhCCHHHHhhccCCeEEe
Confidence 0 1111244567788889999999887654 4555555555555555
No 334
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=40.14 E-value=2.5e+02 Score=24.32 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=21.8
Q ss_pred ceeeccccc------hhhHHHHHHcCCceeecc
Q 048562 340 VGGFMTHCG------WNSTLESVSAGVPMVTWP 366 (464)
Q Consensus 340 ~~~~ItHGG------~~s~~Eal~~GvP~v~~P 366 (464)
..++++|.| .+.+.+|...++|||++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 344788877 458899999999999996
No 335
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=39.90 E-value=2.1e+02 Score=26.95 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=45.9
Q ss_pred cceEEeccccccCCCCCCCCccChHHHHHHHHHHhcCC---hHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048562 383 KIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGTG---EEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALLQELK 459 (464)
Q Consensus 383 G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~~---~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~~~ 459 (464)
..|+++.+. ..++++-...|+-....- -.-+.....|.+|+.. .||.|...+-.+++++.
T Consensus 216 RFGLwL~F~-----------~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~------rg~RSGR~A~QF~~~~~ 278 (287)
T COG2607 216 RFGLWLSFY-----------PCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATT------RGGRSGRVAWQFIRDLA 278 (287)
T ss_pred hcceeeccc-----------CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh------cCCCccHhHHHHHHHHH
Confidence 468999887 789999888888775321 0012577788888765 78888888889999887
Q ss_pred hc
Q 048562 460 SV 461 (464)
Q Consensus 460 ~~ 461 (464)
+.
T Consensus 279 g~ 280 (287)
T COG2607 279 GR 280 (287)
T ss_pred hh
Confidence 64
No 336
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=39.85 E-value=44 Score=30.30 Aligned_cols=65 Identities=17% Similarity=0.282 Sum_probs=36.3
Q ss_pred cEEEEEcCCCcc--CHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCccc
Q 048562 8 VEMFFFPYVGGG--HQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 8 ~~vl~~~~~~~G--H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (464)
||||+..++-.| -.||.-.+++.|..+. .. +..+....+|. .
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~~~--------------~~---------~~~v~~~~lPV-------------~ 44 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPGEL--------------IG---------GAEVHTRELPV-------------S 44 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTTSE--------------ET---------TEEEEEEEE-S-------------S
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCCCc--------------CC---------CceEEEEEecC-------------c
Confidence 578887766333 4799999999997620 00 11344455552 1
Q ss_pred HHHHHhhhHHHHHHhhhhCCCCEEEeC
Q 048562 86 PRTDTSMLQEPLKSLLVDSRPDCIVHD 112 (464)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~pD~Vi~D 112 (464)
.....+.+.+++.+.+||+||.=
T Consensus 45 ----~~~~~~~l~~~l~~~~PdlVIhl 67 (202)
T PF01470_consen 45 ----YEKAFEALEELLEEHQPDLVIHL 67 (202)
T ss_dssp ----HHHHHHHHHHHHHHH--SEEEEE
T ss_pred ----hHhHHHHHHHHHHhcCCcEEEEE
Confidence 12235566777888899999965
No 337
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=39.69 E-value=50 Score=31.81 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=33.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCC
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 44 (464)
|||.|..-||-|-..-++.||..|+++|++|.++-..
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 4588899999999999999999999999999988543
No 338
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=39.46 E-value=2.1e+02 Score=32.63 Aligned_cols=96 Identities=13% Similarity=0.061 Sum_probs=55.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhh-hhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcc
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALS-FQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSA 84 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (464)
...|++++..+. ....+++.|.+-|-+|..++....... ........ +.+..++.
T Consensus 319 ~GKrv~i~~g~~-----~~~~la~~l~elGmevv~~g~~~~~~~d~~~~~~~~---~~~~~vi~---------------- 374 (917)
T PRK14477 319 EGKRVVLFTGGV-----KTWSMVNALRELGVEVLAAGTQNSTLEDFARMKALM---HKDAHIIE---------------- 374 (917)
T ss_pred cCCEEEEECCCc-----hHHHHHHHHHHCCCEEEEEcCCCCCHHHHHHHHHhc---CCCCEEEE----------------
Confidence 346777775442 356788888889999877554422211 11110000 00111110
Q ss_pred cHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEec
Q 048562 85 TPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNG 134 (464)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~ 134 (464)
..-...+.+++++.+||++|.... ...+|+++|||++-...
T Consensus 375 ------~~d~~el~~~i~~~~pDLlig~~~---~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 375 ------DTSTAGLLRVMREKMPDLIVAGGK---TKFLALKTRTPFLDINH 415 (917)
T ss_pred ------CCCHHHHHHHHHhcCCCEEEecCc---hhhHHHHcCCCeEEccC
Confidence 001345567788899999998643 35588999999997553
No 339
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=39.13 E-value=3.2e+02 Score=25.32 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=51.8
Q ss_pred CcEEecCccc---HHHHhcccCceeeccc---cch-hhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccc
Q 048562 321 RGLIIRGWAP---QLLILEHTAVGGFMTH---CGW-NSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNW 393 (464)
Q Consensus 321 ~nv~v~~~vp---q~~lL~~~~~~~~ItH---GG~-~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 393 (464)
.++....+++ ...++..+++ ++.. .|. .++.|++++|+|+|... .......+ ...+.|. +...
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~-~~~~~g~-~~~~-- 326 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVV-EDGETGL-LVPP-- 326 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHh-cCCCceE-ecCC--
Confidence 5777788887 3445666665 4444 344 34699999999996654 33333333 2333466 4321
Q ss_pred cCCCCCCCCccChHHHHHHHHHHhcCC
Q 048562 394 VSWSTEPSAAVGRDKVEVAVKRLMGTG 420 (464)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~ai~~il~~~ 420 (464)
.+.+++.+++..++++.
T Consensus 327 ----------~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 327 ----------GDVEELADALEQLLEDP 343 (381)
T ss_pred ----------CCHHHHHHHHHHHhcCH
Confidence 26889999999999875
No 340
>PRK09165 replicative DNA helicase; Provisional
Probab=39.10 E-value=1.1e+02 Score=32.06 Aligned_cols=43 Identities=14% Similarity=0.034 Sum_probs=33.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC---------------CCcEEEEeCCcchhhhhh
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAH---------------GAKSTIITSPKHALSFQK 52 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~r---------------Gh~Vt~~~~~~~~~~~~~ 52 (464)
+++..-|+.|-..-.+.+|...+.+ |..|.|++.+...+.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 5667778999999999999888754 889999988766654443
No 341
>PRK09739 hypothetical protein; Provisional
Probab=39.02 E-value=68 Score=28.78 Aligned_cols=38 Identities=5% Similarity=0.019 Sum_probs=23.0
Q ss_pred CCCcEEEEEcC-CC-ccCHHH-HHHHHHHHHhCCCcEEEEe
Q 048562 5 SSPVEMFFFPY-VG-GGHQIP-MVDIARIFAAHGAKSTIIT 42 (464)
Q Consensus 5 ~~~~~vl~~~~-~~-~GH~~p-~l~la~~L~~rGh~Vt~~~ 42 (464)
|+|+|||++.. +- .|.-.- .-.+++.|.++||+|+++-
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 45778877754 42 232222 3445667777899998664
No 342
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=38.95 E-value=2.7e+02 Score=27.07 Aligned_cols=82 Identities=12% Similarity=0.232 Sum_probs=50.2
Q ss_pred HHHHHHHhCCCcEEEEeCC--cchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHHHHHhhhh
Q 048562 26 DIARIFAAHGAKSTIITSP--KHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEPLKSLLVD 103 (464)
Q Consensus 26 ~la~~L~~rGh~Vt~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 103 (464)
..+.+|.++||+|+++=.- ...+.+... ...|+.-+ . . . ...|.+++++
T Consensus 15 Htv~~Ll~~G~~vvV~DNL~~g~~~~v~~~---------~~~f~~gD-----------i----~-D----~~~L~~vf~~ 65 (329)
T COG1087 15 HTVRQLLKTGHEVVVLDNLSNGHKIALLKL---------QFKFYEGD-----------L----L-D----RALLTAVFEE 65 (329)
T ss_pred HHHHHHHHCCCeEEEEecCCCCCHHHhhhc---------cCceEEec-----------c----c-c----HHHHHHHHHh
Confidence 4578899999999998543 333333322 01222211 0 0 1 3567788888
Q ss_pred CCCCEEEeCCC---------------------chhhHHHHHHcCCCeEEEeccc
Q 048562 104 SRPDCIVHDMF---------------------HHWSADVINSMNIPRIVFNGNC 136 (464)
Q Consensus 104 ~~pD~Vi~D~~---------------------~~~~~~~A~~~giP~v~~~~~~ 136 (464)
.++|.||.-.. +.....++...|+.-++|+++.
T Consensus 66 ~~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStA 119 (329)
T COG1087 66 NKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTA 119 (329)
T ss_pred cCCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecch
Confidence 89999987542 1134556777888888887653
No 343
>PRK06904 replicative DNA helicase; Validated
Probab=38.92 E-value=1.5e+02 Score=30.81 Aligned_cols=42 Identities=7% Similarity=-0.020 Sum_probs=33.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCcEEEEeCCcchhhhh
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAA-HGAKSTIITSPKHALSFQ 51 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~~~~~~~ 51 (464)
+++..-|+.|-..-++.+|...+. .|+.|.|++.+-..+.+.
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~ 266 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIM 266 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 566678899999999999998875 599999998876654443
No 344
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=38.78 E-value=2.3e+02 Score=23.62 Aligned_cols=114 Identities=13% Similarity=0.054 Sum_probs=66.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCccc
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (464)
++.||++...++.+|-.---=++..|...|++|...+.....+.+.....+. +..++.+. .
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~-----~adii~iS--------------s 61 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEA-----DVHVVGVS--------------S 61 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc-----CCCEEEEc--------------C
Confidence 3678999999999999988888999999999999988754443333322211 33334432 1
Q ss_pred HHHHHhhhHHHHHHhhhhCCC-CE-EEeCCCch-hhHHHHHHcCCCeEEEeccchH
Q 048562 86 PRTDTSMLQEPLKSLLVDSRP-DC-IVHDMFHH-WSADVINSMNIPRIVFNGNCCF 138 (464)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~p-D~-Vi~D~~~~-~~~~~A~~~giP~v~~~~~~~~ 138 (464)
+...+....+.+.+.|++... ++ |++-...+ .-....+.+|+--++...++..
T Consensus 62 l~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~ 117 (132)
T TIGR00640 62 LAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIP 117 (132)
T ss_pred chhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHH
Confidence 112222234555555555332 42 44443222 3344566678866665444433
No 345
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=38.62 E-value=2.5e+02 Score=29.51 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=29.2
Q ss_pred HHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEE
Q 048562 94 QEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVF 132 (464)
Q Consensus 94 ~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~ 132 (464)
...+++++.+.+||++|.... +..+|+.+|+|+|.+
T Consensus 426 l~~l~~~l~~~~~DlliG~s~---~k~~a~~~giPlir~ 461 (515)
T TIGR01286 426 LWHLRSLVFTEPVDFLIGNSY---GKYIQRDTLVPLIRI 461 (515)
T ss_pred HHHHHHHHhhcCCCEEEECch---HHHHHHHcCCCEEEe
Confidence 345668888889999998853 466899999999987
No 346
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=38.55 E-value=50 Score=31.13 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=31.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCC
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 44 (464)
|.|.|..-||-|...-++.||..|+++|++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 4577777889999999999999999999999988443
No 347
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=38.31 E-value=50 Score=33.34 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=33.0
Q ss_pred HHhhhHHHHHHhhhhCCCCEEEeCCCch-------hh---HHHHHHcCCCeEEEe
Q 048562 89 DTSMLQEPLKSLLVDSRPDCIVHDMFHH-------WS---ADVINSMNIPRIVFN 133 (464)
Q Consensus 89 ~~~~~~~~l~~~l~~~~pD~Vi~D~~~~-------~~---~~~A~~~giP~v~~~ 133 (464)
..+...+.+.+++++.+||++|+.+.+. |+ ..+.+.++||.++-.
T Consensus 60 n~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 60 NLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 3455678888999999999999998653 21 124456899999854
No 348
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=38.10 E-value=50 Score=33.33 Aligned_cols=45 Identities=9% Similarity=0.132 Sum_probs=33.2
Q ss_pred HHhhhHHHHHHhhhhCCCCEEEeCCCch-------hh---HHHHHHcCCCeEEEe
Q 048562 89 DTSMLQEPLKSLLVDSRPDCIVHDMFHH-------WS---ADVINSMNIPRIVFN 133 (464)
Q Consensus 89 ~~~~~~~~l~~~l~~~~pD~Vi~D~~~~-------~~---~~~A~~~giP~v~~~ 133 (464)
..+...+.+.+++++.+||++|+.+.+. |+ ..+.+.++||.++-.
T Consensus 60 n~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 60 NLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 3455678888999999999999998653 21 123456899999854
No 349
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=38.01 E-value=47 Score=29.19 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=24.7
Q ss_pred HhhhhCCCCEEEeCCCch-h-hHHHHHHcCCCeEEEe
Q 048562 99 SLLVDSRPDCIVHDMFHH-W-SADVINSMNIPRIVFN 133 (464)
Q Consensus 99 ~~l~~~~pD~Vi~D~~~~-~-~~~~A~~~giP~v~~~ 133 (464)
+.+...+||+||...... . .....+..|||++.+.
T Consensus 63 E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 63 ELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred HHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 445568999999865443 2 4455677899998874
No 350
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=37.93 E-value=52 Score=30.92 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITS 43 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 43 (464)
|.+|.|+.-||-|-..-+..||..|+++|++|.++=.
T Consensus 1 m~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~ 37 (270)
T cd02040 1 MRQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGC 37 (270)
T ss_pred CcEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 4567777777999999999999999999999999843
No 351
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=37.87 E-value=2.3e+02 Score=27.25 Aligned_cols=103 Identities=11% Similarity=0.111 Sum_probs=57.4
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhC--CCcEEEEeCCcc-hhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCC
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAAH--GAKSTIITSPKH-ALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTD 81 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 81 (464)
.+++||+++..+..+.+...+ +..... +++|..+.+... ...+... .++.+..++.. .
T Consensus 87 ~~~~ri~vl~Sg~gsnl~al~---~~~~~~~~~~~i~~visn~~~~~~lA~~--------~gIp~~~~~~~--------~ 147 (286)
T PRK06027 87 AERKRVVILVSKEDHCLGDLL---WRWRSGELPVEIAAVISNHDDLRSLVER--------FGIPFHHVPVT--------K 147 (286)
T ss_pred ccCcEEEEEEcCCCCCHHHHH---HHHHcCCCCcEEEEEEEcChhHHHHHHH--------hCCCEEEeccC--------c
Confidence 467899999998865554443 333332 688888766432 2222111 25555554310 0
Q ss_pred CcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch-hhHHHHHHcCCCeEEE
Q 048562 82 MSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH-WSADVINSMNIPRIVF 132 (464)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~-~~~~~A~~~giP~v~~ 132 (464)
.........+.+.|++.++|+|+.-.|.. ....+.+.+.-.++-+
T Consensus 148 ------~~~~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNi 193 (286)
T PRK06027 148 ------ETKAEAEARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINI 193 (286)
T ss_pred ------cccchhHHHHHHHHHHhCCCEEEEecchhhcCHHHHhhccCCceec
Confidence 01112345677888899999999987654 3444444444444444
No 352
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=37.76 E-value=48 Score=32.14 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKH 46 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 46 (464)
|+||+|+.++.. ....-++|.+.||+|.-+.+...
T Consensus 1 ~mkivF~GTp~f-----a~~~L~~L~~~~~eivaV~Tqpd 35 (307)
T COG0223 1 MMRIVFFGTPEF-----AVPSLEALIEAGHEIVAVVTQPD 35 (307)
T ss_pred CcEEEEEcCchh-----hHHHHHHHHhCCCceEEEEeCCC
Confidence 678999988743 46667888889999988766543
No 353
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=37.64 E-value=3.5e+02 Score=26.61 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=23.8
Q ss_pred CCCEEEeCCCch--hhHHHHHHcCCCeEEEecc
Q 048562 105 RPDCIVHDMFHH--WSADVINSMNIPRIVFNGN 135 (464)
Q Consensus 105 ~pD~Vi~D~~~~--~~~~~A~~~giP~v~~~~~ 135 (464)
.||+||+-.-.- .+..=|.++|||.|.+.-+
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDT 184 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDT 184 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeC
Confidence 699888765432 6777889999999998544
No 354
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=37.57 E-value=1.3e+02 Score=30.15 Aligned_cols=94 Identities=12% Similarity=0.165 Sum_probs=50.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPR 87 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (464)
.|+++.. +-...+.|++.|.+.|-+|..+........-..........+ ...+..-
T Consensus 272 ~~v~i~~-----~~~~~~~l~~~L~elG~~v~~v~~~~~~~~~~e~~~~~~~~~-~~~v~~~------------------ 327 (398)
T PF00148_consen 272 KRVAIYG-----DPDRALGLARFLEELGMEVVAVGCDDKSPEDEERLRWLLEES-DPEVIID------------------ 327 (398)
T ss_dssp -EEEEES-----SHHHHHHHHHHHHHTT-EEEEEEESSGGHHHHHHHHHHHHTT-CSEEEES------------------
T ss_pred ceEEEEc-----CchhHHHHHHHHHHcCCeEEEEEEccCchhHHHHHHHHhhCC-CcEEEeC------------------
Confidence 4566533 336677888888888988888876554322221111000001 1111110
Q ss_pred HHHhhhHHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEE
Q 048562 88 TDTSMLQEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVF 132 (464)
Q Consensus 88 ~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~ 132 (464)
.-...+.+++++.+||++|.+.. ....|+.+++|++..
T Consensus 328 ----~~~~~~~~~l~~~~pdl~ig~~~---~~~~a~~~~~~~~~~ 365 (398)
T PF00148_consen 328 ----PDPEEIEELLEELKPDLLIGSSH---ERYLAKKLGIPLIRI 365 (398)
T ss_dssp ----CBHHHHHHHHHHHT-SEEEESHH---HHHHHHHTT--EEE-
T ss_pred ----CCHHHHHHHHHhcCCCEEEechh---hHHHHHHhCCCeEEE
Confidence 01345778888889999999954 555788888888876
No 355
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=37.53 E-value=45 Score=30.97 Aligned_cols=42 Identities=10% Similarity=0.104 Sum_probs=30.8
Q ss_pred EEEEcCCCccCH-HHHHHHHHHHHhC--CCcEEEEeCCcchhhhhh
Q 048562 10 MFFFPYVGGGHQ-IPMVDIARIFAAH--GAKSTIITSPKHALSFQK 52 (464)
Q Consensus 10 vl~~~~~~~GH~-~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~ 52 (464)
|++--. |.|+. .-.+.+++.|.++ ||+|.++.+....+.+..
T Consensus 2 i~~~it-Gs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 2 IGWGIT-GAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred eEEEEe-CccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 444444 33444 7899999999999 999999998866555544
No 356
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=37.51 E-value=2.9e+02 Score=26.81 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=26.8
Q ss_pred HHHHhhhhCCCCEEEeCCCch-hhHHHHHHcCCCeEEEecc
Q 048562 96 PLKSLLVDSRPDCIVHDMFHH-WSADVINSMNIPRIVFNGN 135 (464)
Q Consensus 96 ~l~~~l~~~~pD~Vi~D~~~~-~~~~~A~~~giP~v~~~~~ 135 (464)
.+.+.+++.+||++|+=.+.. ....+-......++-++++
T Consensus 69 ~~~~~l~~~~~Dliv~~~~~~iip~~il~~~~~g~iNiHps 109 (309)
T PRK00005 69 EFLAELAALNADVIVVVAYGQILPKAVLDIPRLGCINLHAS 109 (309)
T ss_pred HHHHHHHhcCcCEEEEehhhcccCHHHHhcCCCCEEEEeCc
Confidence 445678889999999975533 4444555556667777654
No 357
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=37.41 E-value=59 Score=31.37 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=37.3
Q ss_pred cccCceeeccccchhhHHHHHHc----CCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHH
Q 048562 336 EHTAVGGFMTHCGWNSTLESVSA----GVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEV 411 (464)
Q Consensus 336 ~~~~~~~~ItHGG~~s~~Eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ 411 (464)
..+++ +|+-||-||+.++++. ++|++++-. - . +|-.. ..+.+++.+
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~--------G----~--lGFL~--------------~~~~~~~~~ 111 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINH--------G----R--LGFIT--------------DIPLDDMQE 111 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC--------C----C--ccccc--------------cCCHHHHHH
Confidence 34555 9999999999999773 678887731 1 1 23222 356788888
Q ss_pred HHHHHhcC
Q 048562 412 AVKRLMGT 419 (464)
Q Consensus 412 ai~~il~~ 419 (464)
+|++++++
T Consensus 112 ~l~~~~~g 119 (291)
T PRK02155 112 TLPPMLAG 119 (291)
T ss_pred HHHHHHcC
Confidence 88888765
No 358
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=37.26 E-value=80 Score=28.29 Aligned_cols=42 Identities=7% Similarity=-0.004 Sum_probs=32.1
Q ss_pred hhhHHHHHHhhhhCCCCEEEeCCCc--hhhHHHHHHcCCCeEEE
Q 048562 91 SMLQEPLKSLLVDSRPDCIVHDMFH--HWSADVINSMNIPRIVF 132 (464)
Q Consensus 91 ~~~~~~l~~~l~~~~pD~Vi~D~~~--~~~~~~A~~~giP~v~~ 132 (464)
..+...+.+.+++.++|+|++=... +.+..+|..+|+|++.+
T Consensus 36 ~~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~v 79 (189)
T PRK09219 36 NEIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFA 79 (189)
T ss_pred HHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 3445666667777789999876543 36888999999999998
No 359
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=37.14 E-value=2.8e+02 Score=24.16 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCCcEEEEeCCcc-hhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHHHHHhhh
Q 048562 24 MVDIARIFAAHGAKSTIITSPKH-ALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEPLKSLLV 102 (464)
Q Consensus 24 ~l~la~~L~~rGh~Vt~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 102 (464)
+..+.+.+.++|..|.++++... .+.+...+.+. .+++.+.....+ .+ .....+.+.+.+.
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~---yP~l~ivg~~~g---------~f------~~~~~~~i~~~I~ 98 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRR---YPGLRIVGYHHG---------YF------DEEEEEAIINRIN 98 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHH---CCCeEEEEecCC---------CC------ChhhHHHHHHHHH
Confidence 44556666678999999987543 23333322221 345666643211 11 2234667778888
Q ss_pred hCCCCEEEeCCCch----hhHHHHHHcCCCeEEEeccc
Q 048562 103 DSRPDCIVHDMFHH----WSADVINSMNIPRIVFNGNC 136 (464)
Q Consensus 103 ~~~pD~Vi~D~~~~----~~~~~A~~~giP~v~~~~~~ 136 (464)
+.+||+|++-.-.+ +.....+.++.+ +.+....
T Consensus 99 ~~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~ 135 (172)
T PF03808_consen 99 ASGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGG 135 (172)
T ss_pred HcCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECc
Confidence 99999999998766 566677777777 4444343
No 360
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=36.85 E-value=2.2e+02 Score=29.78 Aligned_cols=100 Identities=12% Similarity=0.084 Sum_probs=62.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEeCCcchhhhhhhhhhccCCCCC---------eEEEEecCCCCCCC
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAH-GAKSTIITSPKHALSFQKSINRNQQSGLP---------ITIKTLHLPDDIEI 77 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~~---------~~~~~~~~~~~~~~ 77 (464)
.-+++...|+.|...-+..++..-+.+ |..|.|++.....+.+....... |.+ +.+.... +...+.
T Consensus 32 s~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~---g~d~~~~~~~g~l~~~~~~-~~~~~~ 107 (509)
T PRK09302 32 RPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASF---GWDLQKLIDEGKLFILDAS-PDPSEQ 107 (509)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHc---CCCHHHHhhCCeEEEEecC-cccccc
Confidence 446777888999999999998877776 99999999887776665553322 211 1111111 000000
Q ss_pred CCCCCcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 78 PDTDMSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
..... .....+...+.+.+++.++|.||.|....
T Consensus 108 ---~~~~~--~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 108 ---EEAGE--YDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred ---ccccc--ccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 00000 01233456677777888999999998764
No 361
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=36.79 E-value=56 Score=29.76 Aligned_cols=35 Identities=17% Similarity=0.056 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKH 46 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 46 (464)
|+++.++-. |++ --.||+.|++.||+|++.+....
T Consensus 1 m~~~~i~Gt---Gni--G~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 1 MMIIAIIGT---GNI--GSALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred CcEEEEecc---ChH--HHHHHHHHHhCCCeEEEecCCCh
Confidence 455666544 433 35789999999999999976544
No 362
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=36.69 E-value=57 Score=30.99 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEe
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIIT 42 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~ 42 (464)
|.+|.|..=||-|-..-++.||..|+++|++|.++=
T Consensus 1 ~~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD 36 (279)
T PRK13230 1 MRKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVG 36 (279)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 557888877799999999999999999999999883
No 363
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=36.45 E-value=2.8e+02 Score=28.02 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=33.1
Q ss_pred cEE-EEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchh
Q 048562 8 VEM-FFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHAL 48 (464)
Q Consensus 8 ~~v-l~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~ 48 (464)
.++ +|+...|.|-..-+..||..+.++|+.|.+++.+.+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 444 44444599999999999999999999999999987743
No 364
>PLN02470 acetolactate synthase
Probab=36.38 E-value=1.4e+02 Score=31.97 Aligned_cols=92 Identities=12% Similarity=0.072 Sum_probs=52.9
Q ss_pred ecCCCCCCCH--HhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcc-cHHHH
Q 048562 258 SFGSLARLSP--EQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWA-PQLLI 334 (464)
Q Consensus 258 s~GS~~~~~~--~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~v-pq~~l 334 (464)
+|||....+. ..-..+++.|++.|.+.|+.+.+. . . + .+.+.+.+ .++++...-- .+...
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~------~----~----~--~l~dal~~-~~~i~~i~~rhE~~A~ 64 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGG------A----S----M--EIHQALTR-SNCIRNVLCRHEQGEV 64 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCc------c----c----H--HHHHHHhc-cCCceEEEeccHHHHH
Confidence 4666664332 235678889999999999998765 1 1 1 12222210 2233322111 11111
Q ss_pred h-------cccCceeeccccc------hhhHHHHHHcCCceeecc
Q 048562 335 L-------EHTAVGGFMTHCG------WNSTLESVSAGVPMVTWP 366 (464)
Q Consensus 335 L-------~~~~~~~~ItHGG------~~s~~Eal~~GvP~v~~P 366 (464)
. .+-+..++++|.| .+.+.+|...++|||++.
T Consensus 65 ~~Adgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 65 FAAEGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 1 1134555888887 458999999999999985
No 365
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=36.35 E-value=56 Score=30.78 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=30.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEe
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIIT 42 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~ 42 (464)
|+|.+..-||-|-..-++.||..|+++|++|.++=
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD 35 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIG 35 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 45777777799999999999999999999999883
No 366
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=36.32 E-value=4.4e+02 Score=26.14 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=59.2
Q ss_pred CCcEEe-cCccc---HHHHhcccCceeeccc--cchhhHHHHHHcCCceeecccccccchhHHHHHhhhcceEEeccccc
Q 048562 320 KRGLII-RGWAP---QLLILEHTAVGGFMTH--CGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNW 393 (464)
Q Consensus 320 ~~nv~v-~~~vp---q~~lL~~~~~~~~ItH--GG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 393 (464)
.+++.+ .+++| ...+|..+++..|.+. =|.|+++-.|+.|+|++.- .+-+.+- -+ .+.|+=+-...+
T Consensus 244 ~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~-~l-~~~~ipVlf~~d-- 316 (360)
T PF07429_consen 244 AENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQ-DL-KEQGIPVLFYGD-- 316 (360)
T ss_pred ccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHH-HH-HhCCCeEEeccc--
Confidence 357764 56887 5668889999776664 5899999999999999875 2333333 34 256665555444
Q ss_pred cCCCCCCCCccChHHHHHHHHHHhc
Q 048562 394 VSWSTEPSAAVGRDKVEVAVKRLMG 418 (464)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~ai~~il~ 418 (464)
.++...|.++=+++..
T Consensus 317 ---------~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ---------ELDEALVREAQRQLAN 332 (360)
T ss_pred ---------cCCHHHHHHHHHHHhh
Confidence 7999999988887754
No 367
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.26 E-value=2.9e+02 Score=26.26 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=34.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcch
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHA 47 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 47 (464)
..+++|+...+.|-..-+..|+..+..+|+.|.+++...+.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 36788888888888888888999999999999999887654
No 368
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.18 E-value=59 Score=30.91 Aligned_cols=26 Identities=15% Similarity=0.056 Sum_probs=22.0
Q ss_pred eeeccccchhhHHHHHH------cCCceeecc
Q 048562 341 GGFMTHCGWNSTLESVS------AGVPMVTWP 366 (464)
Q Consensus 341 ~~~ItHGG~~s~~Eal~------~GvP~v~~P 366 (464)
.++|+-||=||++.+++ .++|++++-
T Consensus 37 Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN 68 (265)
T PRK04885 37 DIVISVGGDGTLLSAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred CEEEEECCcHHHHHHHHHhcccCCCCeEEEEe
Confidence 34999999999999976 488988874
No 369
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.15 E-value=59 Score=34.43 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=29.4
Q ss_pred CcEEEEEc-------CCCccCHHHHHH---HHHHHHhCCCcEEEEeCCcc
Q 048562 7 PVEMFFFP-------YVGGGHQIPMVD---IARIFAAHGAKSTIITSPKH 46 (464)
Q Consensus 7 ~~~vl~~~-------~~~~GH~~p~l~---la~~L~~rGh~Vt~~~~~~~ 46 (464)
|.++++.+ .+-.||+.+.+. +|+-++-+||+|.|+|...-
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDe 53 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDE 53 (558)
T ss_pred CCcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 56666655 236799986554 68888889999999987543
No 370
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=36.09 E-value=1.6e+02 Score=27.18 Aligned_cols=113 Identities=11% Similarity=0.009 Sum_probs=62.5
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEeCCc-chhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHH
Q 048562 17 GGGHQIPMVDIARIFAAHGAKSTIITSPK-HALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQE 95 (464)
Q Consensus 17 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (464)
+..|+...+.++..++.+|=.+.|+++.. +.+.++....++ +.......|- + +.-.........+.. -....+
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~---~gy~~~~~w~-~-G~lTN~~~l~g~~~~-~~~~~p 163 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRA---GGYSHNRKWL-G-GLLTNARELFGALVR-KFLSLP 163 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHh---cCceeeeeec-c-ceeecchhhcccccc-cccCCC
Confidence 67788889999999999999999998754 445555553332 2112222221 0 100000000000000 001122
Q ss_pred HHHHhhhhCCCCEEEeCC-Cch-hhHHHHHHcCCCeEEEecc
Q 048562 96 PLKSLLVDSRPDCIVHDM-FHH-WSADVINSMNIPRIVFNGN 135 (464)
Q Consensus 96 ~l~~~l~~~~pD~Vi~D~-~~~-~~~~~A~~~giP~v~~~~~ 135 (464)
...-++....+|+||+=. ... .++.=|.+++||.|.+.=+
T Consensus 164 d~~~f~~t~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDt 205 (251)
T KOG0832|consen 164 DALCFLPTLTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDT 205 (251)
T ss_pred cceeecccCCcceeEecCcccccHHHHHHHHhCCCeEEEecC
Confidence 233344556779887744 433 6777788899999998543
No 371
>PRK07773 replicative DNA helicase; Validated
Probab=36.02 E-value=1.3e+02 Score=34.01 Aligned_cols=123 Identities=11% Similarity=0.125 Sum_probs=70.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCC------------
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAH-GAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIE------------ 76 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------ 76 (464)
+++..-|+.|-..-++.+|...+.+ |..|.|++-+...+.+....... ..++....+-. ..+.
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R~~s~---~~~i~~~~i~~-g~l~~~~~~~~~~a~~ 295 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMRLLSA---EAKIKLSDMRS-GRMSDDDWTRLARAMG 295 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHH---hcCCCHHHHhc-CCCCHHHHHHHHHHHH
Confidence 5667778999999999999998755 88999998876655443332211 11222211110 0000
Q ss_pred -CCCCCCccc--HHHHHhhhHHHHHHhhhhCCCCEEEeCCCchh-------------------hHHHHHHcCCCeEEEec
Q 048562 77 -IPDTDMSAT--PRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHW-------------------SADVINSMNIPRIVFNG 134 (464)
Q Consensus 77 -~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~-------------------~~~~A~~~giP~v~~~~ 134 (464)
+....++.. -.-....+...++++.++.+.|+||.|..... .-.+|+.++||+|.++.
T Consensus 296 ~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~vpvi~lsQ 375 (886)
T PRK07773 296 EISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVVALSQ 375 (886)
T ss_pred HHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcEEEecc
Confidence 000000000 00011223444555555678999999985431 23478899999999976
Q ss_pred cc
Q 048562 135 NC 136 (464)
Q Consensus 135 ~~ 136 (464)
.+
T Consensus 376 Ln 377 (886)
T PRK07773 376 LS 377 (886)
T ss_pred cC
Confidence 54
No 372
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=35.99 E-value=33 Score=33.72 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
|+||.|+..|..|. .+|..|+++||+|+++....
T Consensus 2 ~mkI~IiG~G~mG~-----~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 2 MARICVLGAGSIGC-----YLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred CceEEEECCCHHHH-----HHHHHHHhcCCcEEEEecHH
Confidence 46899998776664 67889999999999998653
No 373
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=35.86 E-value=81 Score=28.76 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=41.6
Q ss_pred cEEEEEcCCCcc--CHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCccc
Q 048562 8 VEMFFFPYVGGG--HQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 8 ~~vl~~~~~~~G--H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (464)
||||+..++-+| ..||...+++.|.... +. +..+....+|.
T Consensus 1 M~ILvTGF~PF~~~~~NPS~~~~~~L~~~~--------------~~---------~~~v~~~~LPV-------------- 43 (208)
T PRK13194 1 MKVLVTGFEPFGGDKKNPTMDIVKALDGKK--------------IG---------DAKVFGRVLPV-------------- 43 (208)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHhccccc--------------cC---------CcEEEEEEeCC--------------
Confidence 457777766333 5899999999986521 00 11233344442
Q ss_pred HHHHHhhhHHHHHHhhhhCCCCEEEeCCCc
Q 048562 86 PRTDTSMLQEPLKSLLVDSRPDCIVHDMFH 115 (464)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~ 115 (464)
......+.+.+++.+.+||+||+=...
T Consensus 44 ---~~~~~~~~l~~~l~~~~Pd~vlhlG~a 70 (208)
T PRK13194 44 ---SFKRAREELEKVLDEIKPDITINLGLA 70 (208)
T ss_pred ---chHhHHHHHHHHHHHhCCCEEEEeecc
Confidence 122345667777788899999987544
No 374
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=35.80 E-value=2.2e+02 Score=25.87 Aligned_cols=43 Identities=16% Similarity=0.043 Sum_probs=33.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhh
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSF 50 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~ 50 (464)
.-+++...++.|-..-...++.+.+++|..|.|++.....+.+
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i 63 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESI 63 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHH
Confidence 3466677779999888888888777889999999987665544
No 375
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=35.67 E-value=52 Score=30.40 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEeCC
Q 048562 20 HQIPMVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 20 H~~p~l~la~~L~~rGh~Vt~~~~~ 44 (464)
|...|...|++|.++||+|.++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5667899999999999999999877
No 376
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.53 E-value=4.1e+02 Score=25.58 Aligned_cols=34 Identities=18% Similarity=0.040 Sum_probs=27.7
Q ss_pred EEcCCCccCHHHHHHHHHHHHh-CCCcEEEEeCCc
Q 048562 12 FFPYVGGGHQIPMVDIARIFAA-HGAKSTIITSPK 45 (464)
Q Consensus 12 ~~~~~~~GH~~p~l~la~~L~~-rGh~Vt~~~~~~ 45 (464)
+-...-+|++--+-.||+.|++ .||+|.+-+.+.
T Consensus 8 C~ViDNyGDIGV~wRLARql~re~G~~VrLWvDd~ 42 (370)
T COG4394 8 CEVIDNYGDIGVAWRLARQLKREHGWQVRLWVDDK 42 (370)
T ss_pred HhhhcccchhHHHHHHHHHHHHHhCceeeeecCCH
Confidence 3344578999999999999976 599999988763
No 377
>PLN02285 methionyl-tRNA formyltransferase
Probab=35.53 E-value=2.7e+02 Score=27.42 Aligned_cols=41 Identities=12% Similarity=0.241 Sum_probs=26.4
Q ss_pred HHHHHhhhhCCCCEEEeCCCch-hhHHHHHHcCCCeEEEecc
Q 048562 95 EPLKSLLVDSRPDCIVHDMFHH-WSADVINSMNIPRIVFNGN 135 (464)
Q Consensus 95 ~~l~~~l~~~~pD~Vi~D~~~~-~~~~~A~~~giP~v~~~~~ 135 (464)
+.+.+.+++.+||++|+=.+.. ....+-.....-++-++++
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~~~ilp~~~l~~~~~g~iNiHpS 124 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPS 124 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHhhhhcCHHHHhhccCCEEEEecc
Confidence 3445667889999999886543 3444555555567776544
No 378
>PRK05636 replicative DNA helicase; Provisional
Probab=35.02 E-value=79 Score=33.14 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=32.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEeCCcchhhh
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFA-AHGAKSTIITSPKHALSF 50 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~ 50 (464)
+++...|+.|-..-.+.+|...+ ++|..|.|++.+...+.+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 46667789999999999998876 568999999877655443
No 379
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=34.94 E-value=1.2e+02 Score=30.91 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=49.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC-CCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAH-GAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~r-Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
||||++..++..| .|++.|.+. |+.+.++ .+.+....... ..+.++ .
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~-~~~n~g~~~~~-----------~~~~~~-----------~---- 48 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYV-APGNAGTALLA-----------ENVVID-----------V---- 48 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEE-eCCCHHHHhhc-----------cccCCC-----------C----
Confidence 5899999987777 599999886 5444444 33221111100 000010 0
Q ss_pred HHHHhhhHHHHHHhhhhCCCCEEEeCCCch---hhHHHHHHcCCCeEE
Q 048562 87 RTDTSMLQEPLKSLLVDSRPDCIVHDMFHH---WSADVINSMNIPRIV 131 (464)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~---~~~~~A~~~giP~v~ 131 (464)
.-.+.+.+++++.++|+||...-.. ......+.+|+|++.
T Consensus 49 -----~d~~~l~~~~~~~~id~vi~~~e~~l~~~~~~~l~~~gi~~~g 91 (420)
T PRK00885 49 -----TDIEALVAFAKEEGIDLTVVGPEAPLVAGIVDAFRAAGLPIFG 91 (420)
T ss_pred -----CCHHHHHHHHHHhCCCEEEECCchHHHHHHHHHHHHCCCcEEC
Confidence 1134566778888899999754332 223345567998764
No 380
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=34.91 E-value=38 Score=28.41 Aligned_cols=89 Identities=10% Similarity=0.054 Sum_probs=48.7
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHHH
Q 048562 17 GGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQEP 96 (464)
Q Consensus 17 ~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (464)
..-.+.-.+=++..|.++||+|++++++.....++-. . |+++ .... +..+.+.
T Consensus 9 ~Pvq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va-------D----------Pe~~------Y~~~----~~diD~~ 61 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA-------D----------PEKH------YLKE----VVDIDKC 61 (139)
T ss_dssp STTHHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH-------S----------TT-S------S-SE----EEEHHHH
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc-------C----------Cccc------hhcc----eeeHHHH
Confidence 3344455778899999999999999998765555543 0 1110 1111 1123455
Q ss_pred HHHhhhhCCCCEEEeCCCch----hhHHHHHHcCCCeEEEe
Q 048562 97 LKSLLVDSRPDCIVHDMFHH----WSADVINSMNIPRIVFN 133 (464)
Q Consensus 97 l~~~l~~~~pD~Vi~D~~~~----~~~~~A~~~giP~v~~~ 133 (464)
+.++.+. .+|++++-.+-- .+.......+...+.+.
T Consensus 62 l~~i~e~-~~d~~~~FvHNDagvsY~~T~~~i~~~~~~aiV 101 (139)
T PF09001_consen 62 LAEIEEG-DFDLIFGFVHNDAGVSYAATYKAISNAKTIAIV 101 (139)
T ss_dssp HHH--TT-S-SEEEEEESSHHHHHHHHHHHHHH-SEEEEEE
T ss_pred HHHhhhC-CCCEEEEEEecchhHHHHHHHHHHcCCCeEEEE
Confidence 5555544 888888765432 24445556677766654
No 381
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=34.84 E-value=46 Score=32.10 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=35.3
Q ss_pred CcEEEEEcCCCccCHH--------HHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhh
Q 048562 7 PVEMFFFPYVGGGHQI--------PMVDIARIFAAHGAKSTIITSPKHALSFQKSIN 55 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~--------p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~ 55 (464)
..+|++++..-..|.. =.+.||+.|.+.|-+|+++|.......+++...
T Consensus 40 ~~~VlI~TGFpv~~~~~~ETDGP~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~ 96 (291)
T PF14336_consen 40 AKSVLIVTGFPVPPAPPPETDGPPGAAALARALQALGKEVVIVTDERCAPVVKAAVR 96 (291)
T ss_pred CCcEEEEeCCCCCCCCCCCCCChHHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHH
Confidence 4566666644323332 268899999999999999999888877776533
No 382
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=34.66 E-value=42 Score=32.53 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
.++||.|+-.|..| ..+|+.|.++||+|+++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCC
Confidence 45789999777655 478999999999999887653
No 383
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=34.58 E-value=85 Score=27.81 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=31.4
Q ss_pred HHHHHhhhhCCCCEEEeCCC--chhhHHHHHHcCCCeEEE
Q 048562 95 EPLKSLLVDSRPDCIVHDMF--HHWSADVINSMNIPRIVF 132 (464)
Q Consensus 95 ~~l~~~l~~~~pD~Vi~D~~--~~~~~~~A~~~giP~v~~ 132 (464)
+.+.+.+++.++|.|++=.. ...+..+|.++|+|+|.+
T Consensus 43 ~~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 43 DELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 37777777788999998664 347899999999999997
No 384
>PRK08006 replicative DNA helicase; Provisional
Probab=34.49 E-value=1.8e+02 Score=30.20 Aligned_cols=42 Identities=7% Similarity=-0.014 Sum_probs=33.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCcEEEEeCCcchhhhh
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFA-AHGAKSTIITSPKHALSFQ 51 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~-~rGh~Vt~~~~~~~~~~~~ 51 (464)
+++..-|+.|-..-.+.||...+ +.|+.|.|++.+-..+.+.
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~ 269 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIM 269 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 56667889999999999999987 4699999998876554433
No 385
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=34.36 E-value=2.5e+02 Score=22.77 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCCcEEEEeCCc
Q 048562 24 MVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 24 ~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
...+.+.|.++|+.+.++|...
T Consensus 30 v~~~l~~L~~~g~~l~i~Sn~~ 51 (132)
T TIGR01662 30 VPDALAELKEAGYKVVIVTNQS 51 (132)
T ss_pred HHHHHHHHHHCCCEEEEEECCc
Confidence 5567788899999999998865
No 386
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=34.30 E-value=35 Score=30.45 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=24.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKH 46 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 46 (464)
|||.++.- .|++- -.|+++...|||+||-++-...
T Consensus 1 mKIaiIgA--sG~~G--s~i~~EA~~RGHeVTAivRn~~ 35 (211)
T COG2910 1 MKIAIIGA--SGKAG--SRILKEALKRGHEVTAIVRNAS 35 (211)
T ss_pred CeEEEEec--CchhH--HHHHHHHHhCCCeeEEEEeChH
Confidence 45655543 33332 3689999999999999987644
No 387
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=33.94 E-value=2.9e+02 Score=23.38 Aligned_cols=97 Identities=10% Similarity=0.090 Sum_probs=61.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC--CCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEe-cCCCCCCCCCCCCc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAH--GAKSTIITSPKHALSFQKSINRNQQSGLPITIKTL-HLPDDIEIPDTDMS 83 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~ 83 (464)
+++|++... .++=.-++.+++.|.+. ||++ ++|. ...+.+... .++.+..+ ..+ .
T Consensus 4 ~~~v~lsv~--d~dK~~l~~~a~~l~~ll~Gf~l-~AT~-gTa~~L~~~--------~Gi~v~~vi~~~---------~- 61 (142)
T PRK05234 4 RKRIALIAH--DHKKDDLVAWVKAHKDLLEQHEL-YATG-TTGGLIQEA--------TGLDVTRLLSGP---------L- 61 (142)
T ss_pred CcEEEEEEe--ccchHHHHHHHHHHHHHhcCCEE-EEeC-hHHHHHHhc--------cCCeeEEEEcCC---------C-
Confidence 566777664 45567789999999999 9995 3444 444444432 13332222 100 0
Q ss_pred ccHHHHHhhhHHHHHHhhhhCCCCEEEeCC--Cch--------hhHHHHHHcCCCeEEEe
Q 048562 84 ATPRTDTSMLQEPLKSLLVDSRPDCIVHDM--FHH--------WSADVINSMNIPRIVFN 133 (464)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~--~~~--------~~~~~A~~~giP~v~~~ 133 (464)
.-..++.+++++.+.|+||.-. ... ....+|-..|||+++..
T Consensus 62 --------gg~~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l 113 (142)
T PRK05234 62 --------GGDQQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNR 113 (142)
T ss_pred --------CCchhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCH
Confidence 1135677888899999999943 211 34557888999999853
No 388
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=33.75 E-value=2.7e+02 Score=22.98 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=33.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhh
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALS 49 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~ 49 (464)
+++...++.|--.-+..++..+...|..|.|+..+.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH
Confidence 5677778999999999999999999999999988765443
No 389
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=33.69 E-value=75 Score=28.45 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=28.6
Q ss_pred cEEEEEc--CCCccCHHHHHHHHHHHHhCCCcEEEEeCC
Q 048562 8 VEMFFFP--YVGGGHQIPMVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 8 ~~vl~~~--~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 44 (464)
+|++.+. -++.|-..-...||..|+++|++|.++=..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4444444 347788888999999999999999988554
No 390
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=33.61 E-value=63 Score=30.47 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=28.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeC
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITS 43 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 43 (464)
|.+.--||-|-..-++.||..|+++|++|.++=.
T Consensus 5 Iav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~ 38 (270)
T PRK13185 5 LAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGC 38 (270)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4444566999999999999999999999998843
No 391
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=33.52 E-value=66 Score=29.92 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=26.4
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeC
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITS 43 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 43 (464)
+..++||++.-----=..-+-+....|+++||+|++++-
T Consensus 8 ~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 8 LDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred ccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 456777666543333334566777788999999999974
No 392
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=33.51 E-value=41 Score=29.79 Aligned_cols=42 Identities=7% Similarity=0.055 Sum_probs=31.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhh
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQ 51 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 51 (464)
||++...+ .+...-...+.+.|.++|++|.++.++.....+.
T Consensus 2 ~I~lgvtG-s~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 2 KILLAVTG-SIAAYKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred EEEEEEcC-HHHHHHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 56666554 4456677899999999999999998876655544
No 393
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=33.48 E-value=5.2e+02 Score=26.15 Aligned_cols=58 Identities=26% Similarity=0.222 Sum_probs=34.9
Q ss_pred chhhHHHHHHcCCceee--ccccccc------chhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHHHhcC
Q 048562 348 GWNSTLESVSAGVPMVT--WPITAEQ------FSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKRLMGT 419 (464)
Q Consensus 348 G~~s~~Eal~~GvP~v~--~P~~~DQ------~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~il~~ 419 (464)
|..++..++.+|.|+-. ++.++|- -.|+.++++.+-.... ..+.+++..+|.++++|
T Consensus 252 ~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vv---------------vV~~~ei~aaI~~l~ed 316 (457)
T KOG1250|consen 252 GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVV---------------VVEDDEIAAAILRLFED 316 (457)
T ss_pred CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEE---------------EeccHHHHHHHHHHHHh
Confidence 45677778888877632 2223332 2455555422222222 46888999999999987
Q ss_pred C
Q 048562 420 G 420 (464)
Q Consensus 420 ~ 420 (464)
.
T Consensus 317 e 317 (457)
T KOG1250|consen 317 E 317 (457)
T ss_pred h
Confidence 5
No 394
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=33.36 E-value=3.9e+02 Score=29.01 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=27.7
Q ss_pred HHHHhhhhCCCCEEEeCCCch-hhHHHHHHcCCCeEEEecc
Q 048562 96 PLKSLLVDSRPDCIVHDMFHH-WSADVINSMNIPRIVFNGN 135 (464)
Q Consensus 96 ~l~~~l~~~~pD~Vi~D~~~~-~~~~~A~~~giP~v~~~~~ 135 (464)
.+.+.|++.+||++|+-.+.. ....+-......++-++++
T Consensus 66 ~~~~~l~~~~~D~iv~~~~~~ii~~~il~~~~~g~iN~H~s 106 (660)
T PRK08125 66 LWVERIRELAPDVIFSFYYRNLLSDEILQLAPAGAFNLHGS 106 (660)
T ss_pred HHHHHHHhcCCCEEEEccccccCCHHHHhhcCCCEEEEeCC
Confidence 345667888999999876543 4445556566677887766
No 395
>PLN02929 NADH kinase
Probab=33.19 E-value=64 Score=31.22 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=41.4
Q ss_pred eeccccchhhHHHHHH---cCCceeeccccc------ccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHH
Q 048562 342 GFMTHCGWNSTLESVS---AGVPMVTWPITA------EQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVA 412 (464)
Q Consensus 342 ~~ItHGG~~s~~Eal~---~GvP~v~~P~~~------DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~a 412 (464)
++|+-||=||++.+.+ .++|++++=... .++.|.-.. ..-+|--. .++.+++.++
T Consensus 67 lvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~--~r~lGfL~--------------~~~~~~~~~~ 130 (301)
T PLN02929 67 LVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDA--RRSTGHLC--------------AATAEDFEQV 130 (301)
T ss_pred EEEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccc--ccCccccc--------------cCCHHHHHHH
Confidence 4999999999999855 478988875431 122333211 12245333 3567899999
Q ss_pred HHHHhcCC
Q 048562 413 VKRLMGTG 420 (464)
Q Consensus 413 i~~il~~~ 420 (464)
|++++++.
T Consensus 131 L~~il~g~ 138 (301)
T PLN02929 131 LDDVLFGR 138 (301)
T ss_pred HHHHHcCC
Confidence 99999863
No 396
>PRK08462 biotin carboxylase; Validated
Probab=33.18 E-value=4e+02 Score=27.24 Aligned_cols=99 Identities=12% Similarity=-0.035 Sum_probs=58.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCccc
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (464)
+|.|||++.-+. + .+++.+++++.|++|..+.+....+...-. .--+.+.++. . ..
T Consensus 3 ~~k~ili~~~g~---~--~~~~~~~~~~~G~~~v~~~~~~d~~~~~~~--------~ad~~~~~~~-------~-~~--- 58 (445)
T PRK08462 3 EIKRILIANRGE---I--ALRAIRTIQEMGKEAIAIYSTADKDALYLK--------YADAKICIGG-------A-KS--- 58 (445)
T ss_pred CCCEEEEECCcH---H--HHHHHHHHHHcCCCEEEEechhhcCCchhh--------hCCEEEEeCC-------C-ch---
Confidence 477888886543 2 678889999999998887665432111000 0012222210 0 00
Q ss_pred HHHHHhhh-HHHHHHhhhhCCCCEEEeCCCch----hhHHHHHHcCCCeEE
Q 048562 86 PRTDTSML-QEPLKSLLVDSRPDCIVHDMFHH----WSADVINSMNIPRIV 131 (464)
Q Consensus 86 ~~~~~~~~-~~~l~~~l~~~~pD~Vi~D~~~~----~~~~~A~~~giP~v~ 131 (464)
.-..+ .+.+.++.++.++|+|+.-.-+. ....+++.+|+|++.
T Consensus 59 ---~~~y~~~~~l~~~~~~~~~D~i~pg~g~lse~~~~a~~~e~~Gi~~~g 106 (445)
T PRK08462 59 ---SESYLNIPAIISAAEIFEADAIFPGYGFLSENQNFVEICSHHNIKFIG 106 (445)
T ss_pred ---hcccCCHHHHHHHHHHcCCCEEEECCCccccCHHHHHHHHHCCCeEEC
Confidence 00112 46777888899999999775331 233467889999875
No 397
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=33.03 E-value=3e+02 Score=28.16 Aligned_cols=98 Identities=13% Similarity=0.010 Sum_probs=56.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhh-hhhhhhccCCCCCeEEEEecCCCCCCCCCCCCccc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSF-QKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (464)
|.|||++..+ .+ .+.+++++.+.|++|..+.+....... .+. .+ .++.+. | . ..
T Consensus 2 ~k~iLi~g~g---~~--a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~--------ad-~~~~~~-~----~---~~--- 56 (451)
T PRK08591 2 FDKILIANRG---EI--ALRIIRACKELGIKTVAVHSTADRDALHVQL--------AD-EAVCIG-P----A---PS--- 56 (451)
T ss_pred cceEEEECCC---HH--HHHHHHHHHHcCCeEEEEcChhhccCCCHhH--------CC-EEEEeC-C----C---Cc---
Confidence 6788888443 22 588899999999999988665332110 011 01 222221 0 0 00
Q ss_pred HHHHHhhh-HHHHHHhhhhCCCCEEEeCCCc-h---hhHHHHHHcCCCeEEE
Q 048562 86 PRTDTSML-QEPLKSLLVDSRPDCIVHDMFH-H---WSADVINSMNIPRIVF 132 (464)
Q Consensus 86 ~~~~~~~~-~~~l~~~l~~~~pD~Vi~D~~~-~---~~~~~A~~~giP~v~~ 132 (464)
.-..+ .+.+.++.++.++|+|+.-..+ . ....+++.+|+|++.-
T Consensus 57 ---~~~y~d~~~l~~~a~~~~id~I~p~~~~~~e~~~~~~~~e~~gi~~~g~ 105 (451)
T PRK08591 57 ---KKSYLNIPAIISAAEITGADAIHPGYGFLSENADFAEICEDSGFTFIGP 105 (451)
T ss_pred ---ccccCCHHHHHHHHHHhCCCEEEECCCccccCHHHHHHHHHCCCceECc
Confidence 00111 3567777888899999864311 1 2455778899998863
No 398
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=32.96 E-value=2.7e+02 Score=26.98 Aligned_cols=96 Identities=11% Similarity=0.062 Sum_probs=57.8
Q ss_pred CCcEEEEecCCCC-C---CCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEE-e
Q 048562 251 TNSVLYISFGSLA-R---LSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLI-I 325 (464)
Q Consensus 251 ~~~~V~vs~GS~~-~---~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~-v 325 (464)
+++.|.+..|+.. . .+.+.+.++++.+.+.+.++++.-++. +. + .-+.+.+.. +.++. +
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~----------e~--~-~~~~i~~~~---~~~~~~l 236 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAK----------DH--P-AGNEIEALL---PGELRNL 236 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChh----------hH--H-HHHHHHHhC---CcccccC
Confidence 4679999988852 2 778889999988877677766553332 11 0 111222221 22221 1
Q ss_pred cCc--c-cHHHHhcccCceeeccccchhhHHHHHHcCCceeec
Q 048562 326 RGW--A-PQLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTW 365 (464)
Q Consensus 326 ~~~--v-pq~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~ 365 (464)
.+- + .-..+++++++ ||+.- .|-+.=|.+.|+|+|++
T Consensus 237 ~g~~sL~el~ali~~a~l--~I~~D-SGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 237 AGETSLDEAVDLIALAKA--VVTND-SGLMHVAAALNRPLVAL 276 (334)
T ss_pred CCCCCHHHHHHHHHhCCE--EEeeC-CHHHHHHHHcCCCEEEE
Confidence 222 2 24567777776 88764 45566677899999875
No 399
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=32.93 E-value=72 Score=30.22 Aligned_cols=36 Identities=14% Similarity=0.138 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEe
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIIT 42 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~ 42 (464)
|..|.|..-||-|-..-++.||..|+++|++|.++=
T Consensus 1 m~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID 36 (274)
T PRK13235 1 MRKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVG 36 (274)
T ss_pred CCEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEe
Confidence 345667767799999999999999999999999983
No 400
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=32.84 E-value=60 Score=31.15 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=25.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCC
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 44 (464)
|||+++..|+.| ..+|..|++.||+|+++..+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~ 32 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRP 32 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecH
Confidence 468888776665 46788899999999999873
No 401
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=32.70 E-value=1e+02 Score=26.89 Aligned_cols=50 Identities=10% Similarity=0.103 Sum_probs=34.8
Q ss_pred HHHHHhhhHHHHHHhhhhCCCCEEEeCCCchh---------------hHHHHHHcCCCeEEEecc
Q 048562 86 PRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHW---------------SADVINSMNIPRIVFNGN 135 (464)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~---------------~~~~A~~~giP~v~~~~~ 135 (464)
+...+..+...+.+++++.+||.++.+..+.. ...++...|+|+.-+.|.
T Consensus 42 ~~~Rl~~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 42 LPERLKQIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 33445566789999999999999988875431 122555678888877443
No 402
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=32.68 E-value=1.1e+02 Score=27.97 Aligned_cols=68 Identities=7% Similarity=0.039 Sum_probs=41.2
Q ss_pred cEEEEEcCCCcc--CHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCccc
Q 048562 8 VEMFFFPYVGGG--HQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 8 ~~vl~~~~~~~G--H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (464)
|+||+..++-.| -.||...++++|....- . +..+....+|.
T Consensus 1 M~vLiTGF~PF~g~~~NPS~~~v~~L~~~~~--------------~---------~~~v~~~~LPv-------------- 43 (209)
T PRK13193 1 MTVLLFGFEPFLEYKENPSQLIVEALNGSTI--------------L---------KEEVKGVILPV-------------- 43 (209)
T ss_pred CEEEEEeeCCCCCCCCCcHHHHHHHhhcccc--------------C---------CceEEEEEeCC--------------
Confidence 457777766333 47899999999965210 0 11233334441
Q ss_pred HHHHHhhhHHHHHHhhhhCCCCEEEeCCCc
Q 048562 86 PRTDTSMLQEPLKSLLVDSRPDCIVHDMFH 115 (464)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~ 115 (464)
......+.+.+++++.+||+||+=...
T Consensus 44 ---~~~~~~~~l~~~~~~~~Pd~vl~~G~a 70 (209)
T PRK13193 44 ---EYEKIEDLIVTKIREMKPILTLGIGVA 70 (209)
T ss_pred ---cHHHHHHHHHHHHHHHCCCEEEEeccc
Confidence 122235667777788899999987544
No 403
>PRK13604 luxD acyl transferase; Provisional
Probab=32.51 E-value=80 Score=30.71 Aligned_cols=37 Identities=5% Similarity=-0.015 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEe
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIIT 42 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~ 42 (464)
++.+++++.++..++-..+..+|+.|.++|+.|.-+=
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 3456788888877787779999999999999988764
No 404
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=32.47 E-value=97 Score=27.69 Aligned_cols=43 Identities=12% Similarity=0.366 Sum_probs=29.8
Q ss_pred HHHHHHhhhhCCCC--EEEeCCCch-hhHHHHHHcCCCeEEEeccc
Q 048562 94 QEPLKSLLVDSRPD--CIVHDMFHH-WSADVINSMNIPRIVFNGNC 136 (464)
Q Consensus 94 ~~~l~~~l~~~~pD--~Vi~D~~~~-~~~~~A~~~giP~v~~~~~~ 136 (464)
...+.+++++..++ ++|...+.. .+..+|+++++|.|.++|.-
T Consensus 46 ~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 46 IAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 34556666665544 666665543 67789999999999987653
No 405
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=32.39 E-value=2.1e+02 Score=28.18 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCC-cEEEEeCC
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGA-KSTIITSP 44 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh-~Vt~~~~~ 44 (464)
+.+||+++..++.| ..+|+.|++.|+ +++++=..
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcCC
Confidence 46789999888766 678999999998 66665443
No 406
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=32.33 E-value=92 Score=27.20 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=23.8
Q ss_pred CCcEEEEecCCCCCCCHHhHHHHHHHHhhCCC
Q 048562 251 TNSVLYISFGSLARLSPEQLLEIAYGLEASNH 282 (464)
Q Consensus 251 ~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~ 282 (464)
.+..||+++||....+.+.+...++.|++.+.
T Consensus 6 ~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~~ 37 (163)
T PRK14092 6 ASALAYVGLGANLGDAAATLRSVLAELAAAPG 37 (163)
T ss_pred cCCEEEEEecCchHhHHHHHHHHHHHHHhCCC
Confidence 34589999999986666677777777776543
No 407
>PRK12743 oxidoreductase; Provisional
Probab=32.21 E-value=2.4e+02 Score=25.94 Aligned_cols=32 Identities=13% Similarity=-0.002 Sum_probs=21.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeC
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITS 43 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 43 (464)
|.++++.+ .|.+ -..+++.|+++||+|.++..
T Consensus 3 k~vlItGa-s~gi--G~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 3 QVAIVTAS-DSGI--GKACALLLAQQGFDIGITWH 34 (256)
T ss_pred CEEEEECC-CchH--HHHHHHHHHHCCCEEEEEeC
Confidence 34444443 3333 36799999999999987654
No 408
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=32.15 E-value=56 Score=33.01 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=36.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
+.+||++...|+ +...-.+.+.+.|.+.|++|.++.++...+.+...
T Consensus 2 ~~k~IllgiTGS-iaa~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~ 48 (390)
T TIGR00521 2 ENKKILLGVTGG-IAAYKTVELVRELVRQGAEVKVIMTEAAKKFITPL 48 (390)
T ss_pred CCCEEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEECHhHHHHHHHH
Confidence 356787777754 44566999999999999999999988776666543
No 409
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=31.88 E-value=1.5e+02 Score=25.01 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=21.3
Q ss_pred eeeccccc------hhhHHHHHHcCCceeeccc
Q 048562 341 GGFMTHCG------WNSTLESVSAGVPMVTWPI 367 (464)
Q Consensus 341 ~~~ItHGG------~~s~~Eal~~GvP~v~~P~ 367 (464)
.++++|+| .+.+.+|...++|+|++.-
T Consensus 61 ~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 61 GVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 34888866 4588899999999999863
No 410
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=31.87 E-value=60 Score=24.91 Aligned_cols=49 Identities=16% Similarity=0.252 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 048562 406 RDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALLQELKSV 461 (464)
Q Consensus 406 ~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~~~~~ 461 (464)
.+.|.+.++.-|... ..++..+.+.+ +.++++|....++.++++++...
T Consensus 16 ~~~L~~~L~~rL~e~----GW~d~vr~~~r---e~i~~~g~~~~~~~~l~~~i~P~ 64 (86)
T PF10163_consen 16 YERLKELLRQRLIEC----GWRDEVRQLCR---EIIRERGIDNLTFEDLLEEITPK 64 (86)
T ss_dssp HHHHHHHHHHHHHHT----THHHHHHHHHH---HHHHHH-TTTSBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC----ChHHHHHHHHH---HHHHhhCCCCCCHHHHHHHHHHH
Confidence 345566666555444 34444433333 33345555556678888887653
No 411
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=31.85 E-value=60 Score=28.67 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=26.8
Q ss_pred ccCHHH-HHHHHHHHHh-CCCcEEEEeCCcchhhhh
Q 048562 18 GGHQIP-MVDIARIFAA-HGAKSTIITSPKHALSFQ 51 (464)
Q Consensus 18 ~GH~~p-~l~la~~L~~-rGh~Vt~~~~~~~~~~~~ 51 (464)
.||... .+.+.+.|.+ +||+|.++.++...+.+.
T Consensus 9 sg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 9 SGDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 377765 8899999984 599999999987765444
No 412
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=31.42 E-value=60 Score=28.69 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhh
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSF 50 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~ 50 (464)
+...+++...+|.|-..-...+++++.++|+.|.|+......+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 345688888888888888999999999999999999876554443
No 413
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=31.17 E-value=81 Score=28.35 Aligned_cols=38 Identities=26% Similarity=0.297 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCccCHHHHHH-HHHHHHh-CCCcEEEEeCC
Q 048562 7 PVEMFFFPYVGGGHQIPMVD-IARIFAA-HGAKSTIITSP 44 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~-la~~L~~-rGh~Vt~~~~~ 44 (464)
|+||+++-+...||..-+.. +++.+.+ .|++|.++.-+
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~ 40 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVP 40 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEecc
Confidence 45788888888899998777 4556666 89999877643
No 414
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=31.01 E-value=52 Score=33.52 Aligned_cols=35 Identities=14% Similarity=-0.035 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCC
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 44 (464)
|+++||.|+-.|..| +.+|..|+++||+|+.+-..
T Consensus 1 m~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 1 MSFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred CCccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCC
Confidence 346789888665444 57899999999999988643
No 415
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=30.94 E-value=72 Score=32.60 Aligned_cols=36 Identities=14% Similarity=0.354 Sum_probs=27.6
Q ss_pred HHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEe
Q 048562 95 EPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFN 133 (464)
Q Consensus 95 ~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~ 133 (464)
..+.+.+++.+||++|.+.. ...+|+++|+|++.+.
T Consensus 360 ~e~~~~i~~~~pdliig~~~---~~~~a~~~gip~~~~~ 395 (430)
T cd01981 360 TEVGDMIARTEPELIFGTQM---ERHIGKRLDIPCAVIS 395 (430)
T ss_pred HHHHHHHHhhCCCEEEecch---hhHHHHHcCCCEEEEe
Confidence 44666777789999999863 3446899999999874
No 416
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=30.74 E-value=68 Score=33.73 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=27.9
Q ss_pred HHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEe
Q 048562 95 EPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFN 133 (464)
Q Consensus 95 ~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~ 133 (464)
..+.+.+++.+||+||.+.. ...+|+.+|||++.++
T Consensus 364 ~ei~~~I~~~~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIARVEPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHhcCCCEEEECch---hhHHHHHhCCCEEEee
Confidence 45567777789999999963 3445899999998874
No 417
>PRK13768 GTPase; Provisional
Probab=30.62 E-value=1e+02 Score=28.94 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=30.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
-+++...+|.|-..-+..++..|..+|++|.++....
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4555566688888889999999999999999987653
No 418
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=30.60 E-value=61 Score=33.10 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=29.3
Q ss_pred HHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEe
Q 048562 95 EPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFN 133 (464)
Q Consensus 95 ~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~ 133 (464)
..+.+++++.+||++|.... ...+|+++|||++.+.
T Consensus 359 ~e~~~~i~~~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 359 YELEEFVKRLKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHhCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 45667888899999998865 5557999999998764
No 419
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.46 E-value=63 Score=30.81 Aligned_cols=60 Identities=8% Similarity=0.069 Sum_probs=39.2
Q ss_pred cHHHHhcccCceeeccccchhhHHHHHH----cCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccC
Q 048562 330 PQLLILEHTAVGGFMTHCGWNSTLESVS----AGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVG 405 (464)
Q Consensus 330 pq~~lL~~~~~~~~ItHGG~~s~~Eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~ 405 (464)
++.++...+++ +|+=||-||++.+.+ .++|++++-.. . +|--. .++
T Consensus 35 ~~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G------------~--lGFL~--------------~~~ 84 (272)
T PRK02231 35 SLEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG------------N--LGFLT--------------DID 84 (272)
T ss_pred ChHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC------------C--Ccccc--------------cCC
Confidence 33444444565 999999999998855 36888877321 1 23222 356
Q ss_pred hHHHHHHHHHHhcC
Q 048562 406 RDKVEVAVKRLMGT 419 (464)
Q Consensus 406 ~~~l~~ai~~il~~ 419 (464)
++++.+++.+++++
T Consensus 85 ~~~~~~~l~~~~~~ 98 (272)
T PRK02231 85 PKNAYEQLEACLER 98 (272)
T ss_pred HHHHHHHHHHHHhc
Confidence 67777888887773
No 420
>PLN02939 transferase, transferring glycosyl groups
Probab=30.32 E-value=85 Score=35.45 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=31.0
Q ss_pred CCCcEEEEEcC-----C-CccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 5 SSPVEMFFFPY-----V-GGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 5 ~~~~~vl~~~~-----~-~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
.+.+||+|++. . .+|=-.-.-+|.++|++.||+|.++++..
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 45799999872 2 33444456788999999999999999854
No 421
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=30.10 E-value=1.3e+02 Score=22.80 Aligned_cols=49 Identities=22% Similarity=0.341 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Q 048562 407 DKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALLQELKSVS 462 (464)
Q Consensus 407 ~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~~~~~~ 462 (464)
+-|.++|+ +|. .-..+...|++.+.+..+.|.+..-+.+++++..++.+
T Consensus 31 EvvR~aLR-lle------~~e~~~~~Lr~~l~~g~~sG~~~~~~~~~~~~~~~~~~ 79 (80)
T PF03693_consen 31 EVVREALR-LLE------EREAKLEALREALQEGLESGESEPFDMDDILARARRKH 79 (80)
T ss_dssp HHHHHHHH-HHH------HHHHHHHHHHHHHHHHHCT-EESS--HHHHHHHCCH--
T ss_pred HHHHHHHH-HHH------HHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhhc
Confidence 44555565 454 22345567888888766666666567889998887755
No 422
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=29.81 E-value=86 Score=28.44 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 44 (464)
+.||.+-..+|-|-.+.|+.=|..|.++|.+|.+.--.
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 57899999999999999999999999999999986543
No 423
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=29.81 E-value=1.4e+02 Score=28.70 Aligned_cols=93 Identities=12% Similarity=0.012 Sum_probs=51.4
Q ss_pred cccccccCcCCCCcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCC
Q 048562 240 GKILSFLDSKETNSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGES 319 (464)
Q Consensus 240 ~~l~~~l~~~~~~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 319 (464)
+++.+.....+-+++-+-............+..++++++++|..+++-+|.. . .+-+.
T Consensus 116 ~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~------~---------~~~~~------- 173 (293)
T COG2159 116 EELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAG------P---------GGAGL------- 173 (293)
T ss_pred HHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCC------C---------CCccc-------
Confidence 3555555543333333333333333455567889999999999999977654 0 10000
Q ss_pred CCcEEecCcccHHHHhcccCceeeccccc--hhhHHHH
Q 048562 320 KRGLIIRGWAPQLLILEHTAVGGFMTHCG--WNSTLES 355 (464)
Q Consensus 320 ~~nv~v~~~vpq~~lL~~~~~~~~ItHGG--~~s~~Ea 355 (464)
... ....+.=..-....|+++.++.|.| ..=..|+
T Consensus 174 ~~~-~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 174 EKG-HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred ccC-CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 000 0111111333456799999999999 5555555
No 424
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=29.78 E-value=59 Score=31.20 Aligned_cols=73 Identities=11% Similarity=0.103 Sum_probs=47.5
Q ss_pred CCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCCCCcEEecCcccHHHHhcccCceeec
Q 048562 265 LSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGESKRGLIIRGWAPQLLILEHTAVGGFM 344 (464)
Q Consensus 265 ~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~nv~v~~~vpq~~lL~~~~~~~~I 344 (464)
.+.+....+.+|+.+...+.||.+.+. + . -.++.++++...+-.+|+. ||
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG------y----g------------------~~rlL~~ld~~~i~~~pK~--~i 95 (284)
T PF02016_consen 46 SDEERAEDLNEAFADPEIDAIWCARGG------Y----G------------------ANRLLPYLDYDAIRKNPKI--FI 95 (284)
T ss_dssp -HHHHHHHHHHHHHSTTEEEEEES--S------S-----------------------GGGGGGGCHHHHHHHSG-E--EE
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEeecc------c----c------------------HHHHHhcccccccccCCCE--EE
Confidence 356778889999999999999998776 1 1 1235567777777777776 88
Q ss_pred cccchhhHHHHHHc--CCceeeccc
Q 048562 345 THCGWNSTLESVSA--GVPMVTWPI 367 (464)
Q Consensus 345 tHGG~~s~~Eal~~--GvP~v~~P~ 367 (464)
-.....++.-+++. |.+.+--|.
T Consensus 96 GySDiTaL~~al~~~~g~~t~hGp~ 120 (284)
T PF02016_consen 96 GYSDITALHNALYAKTGLVTFHGPM 120 (284)
T ss_dssp E-GGGHHHHHHHHHHHTBEEEES--
T ss_pred EecchHHHHHHHHHhCCCeEEEcch
Confidence 77777777766554 566666665
No 425
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=29.69 E-value=3.5e+02 Score=26.50 Aligned_cols=99 Identities=8% Similarity=0.044 Sum_probs=58.4
Q ss_pred CCcEEEEecCCCC-C---CCHHhHHHHHHHHhhCCCceEEEEccCCCCCCCCcCCcccccCCchhHHHhhcCC-CCc-EE
Q 048562 251 TNSVLYISFGSLA-R---LSPEQLLEIAYGLEASNHSFIWVVGKIFQSPGTRKENGIEENWLPSGFEERMGES-KRG-LI 324 (464)
Q Consensus 251 ~~~~V~vs~GS~~-~---~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~-~~n-v~ 324 (464)
+++.|.+..|+.. . .+.+.+.++++.+...+.++++.-+.. +. + +-+.+.+...+. ..+ +.
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~----------e~--~-~~~~i~~~~~~~~~~~~~~ 245 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAK----------DH--E-AGNEILAALNTEQQAWCRN 245 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHH----------hH--H-HHHHHHHhcccccccceee
Confidence 4678999998852 2 778899999988876677776653332 11 0 111222211100 011 12
Q ss_pred ecCcc--c-HHHHhcccCceeeccccchhhHHHHHHcCCceeec
Q 048562 325 IRGWA--P-QLLILEHTAVGGFMTHCGWNSTLESVSAGVPMVTW 365 (464)
Q Consensus 325 v~~~v--p-q~~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~ 365 (464)
..+-. . -..++.++++ ||+. ..|-+.=|.+.|+|+|++
T Consensus 246 l~g~~sL~el~ali~~a~l--~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 246 LAGETQLEQAVILIAACKA--IVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred ccCCCCHHHHHHHHHhCCE--EEec-CChHHHHHHHhCCCEEEE
Confidence 22222 2 3557778876 8875 456677788899999875
No 426
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=29.56 E-value=63 Score=30.93 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=25.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCC
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 44 (464)
+||+++..|..| ..+|..|.+.||+|+++...
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECC
Confidence 367777766555 56788899999999999873
No 427
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.11 E-value=80 Score=30.38 Aligned_cols=54 Identities=7% Similarity=0.053 Sum_probs=36.7
Q ss_pred cccCceeeccccchhhHHHHHH----cCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHH
Q 048562 336 EHTAVGGFMTHCGWNSTLESVS----AGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEV 411 (464)
Q Consensus 336 ~~~~~~~~ItHGG~~s~~Eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ 411 (464)
..+++ +|+-||-||++.+.+ .++|++++-.. . +|--. .++.+++.+
T Consensus 63 ~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G------------~--lGFLt--------------~~~~~~~~~ 112 (287)
T PRK14077 63 KISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAG------------H--LGFLT--------------DITVDEAEK 112 (287)
T ss_pred cCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCC------------C--cccCC--------------cCCHHHHHH
Confidence 34555 999999999998866 37888877310 1 12211 456788888
Q ss_pred HHHHHhcC
Q 048562 412 AVKRLMGT 419 (464)
Q Consensus 412 ai~~il~~ 419 (464)
++++++++
T Consensus 113 ~l~~i~~g 120 (287)
T PRK14077 113 FFQAFFQG 120 (287)
T ss_pred HHHHHHcC
Confidence 88888775
No 428
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=28.99 E-value=1.3e+02 Score=26.97 Aligned_cols=42 Identities=12% Similarity=-0.014 Sum_probs=31.2
Q ss_pred hhhHHHHHHhhhhCCCCEEEeCCCc--hhhHHHHHHcCCCeEEE
Q 048562 91 SMLQEPLKSLLVDSRPDCIVHDMFH--HWSADVINSMNIPRIVF 132 (464)
Q Consensus 91 ~~~~~~l~~~l~~~~pD~Vi~D~~~--~~~~~~A~~~giP~v~~ 132 (464)
..+...+.+.+++.++|.|++=... +.+..+|..+|+|++..
T Consensus 36 ~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~v 79 (191)
T TIGR01744 36 QEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFA 79 (191)
T ss_pred HHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 3445666666777789999864432 36778899999999997
No 429
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=28.85 E-value=84 Score=33.00 Aligned_cols=35 Identities=11% Similarity=0.244 Sum_probs=27.5
Q ss_pred HHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEe
Q 048562 96 PLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFN 133 (464)
Q Consensus 96 ~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~ 133 (464)
.+.+.+++.+||+||.+. ....+|+++|+|++.++
T Consensus 355 ei~~~i~~~~pdliiG~~---~er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 355 EVADAIAALEPELVLGTQ---MERHSAKRLDIPCGVIS 389 (511)
T ss_pred HHHHHHHhcCCCEEEECh---HHHHHHHHcCCCEEEec
Confidence 566667778999999985 34557899999998874
No 430
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=28.84 E-value=92 Score=32.43 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=37.4
Q ss_pred ceeeccccchhhHHHHHHc----CCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHHHHHHHHH
Q 048562 340 VGGFMTHCGWNSTLESVSA----GVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDKVEVAVKR 415 (464)
Q Consensus 340 ~~~~ItHGG~~s~~Eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~l~~ai~~ 415 (464)
+.++|+=||-||++.+.+. ++|++++- .- . +|-.. .+..+++.++|.+
T Consensus 263 ~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN--------~G----~--LGFLt--------------~i~~~e~~~~Le~ 314 (508)
T PLN02935 263 VDLVITLGGDGTVLWAASMFKGPVPPVVPFS--------MG----S--LGFMT--------------PFHSEQYRDCLDA 314 (508)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEEe--------CC----C--cceec--------------ccCHHHHHHHHHH
Confidence 3449999999999999774 56877662 11 1 23322 4678889999999
Q ss_pred HhcCC
Q 048562 416 LMGTG 420 (464)
Q Consensus 416 il~~~ 420 (464)
++++.
T Consensus 315 il~G~ 319 (508)
T PLN02935 315 ILKGP 319 (508)
T ss_pred HHcCC
Confidence 98753
No 431
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=28.78 E-value=4.3e+02 Score=23.69 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=31.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
+++...++.|=..-++.+|..++.+|..|.|+....
T Consensus 22 ~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 22 TQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 456667799999999999999999999999997753
No 432
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=28.78 E-value=3.3e+02 Score=24.99 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCcEEEEeCC
Q 048562 24 MVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 24 ~l~la~~L~~rGh~Vt~~~~~ 44 (464)
-..+++.|+++|++|+++...
T Consensus 21 G~~la~~l~~~G~~v~~~~r~ 41 (260)
T PRK12823 21 GRGVALRAAAEGARVVLVDRS 41 (260)
T ss_pred HHHHHHHHHHCCCEEEEEeCc
Confidence 367899999999999877654
No 433
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=28.73 E-value=2.3e+02 Score=26.57 Aligned_cols=102 Identities=18% Similarity=0.264 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhCC-CcEEEEeCCcchhhhhh-hhhhccCCCCCeEEEEecCCCCC-CCCCCCCcccHHHHHhhhHHHHHH
Q 048562 23 PMVDIARIFAAHG-AKSTIITSPKHALSFQK-SINRNQQSGLPITIKTLHLPDDI-EIPDTDMSATPRTDTSMLQEPLKS 99 (464)
Q Consensus 23 p~l~la~~L~~rG-h~Vt~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 99 (464)
-+-..++.|.+.+ .+|.+.++......+.. .. .+..+-...+|.++.- .++....... .-....+.-+.
T Consensus 117 ~~~eA~~~l~~~~~~~iflttGsk~L~~f~~~~~-----~~~r~~~RvLp~~~~~~g~~~~~iia~---~GPfs~e~n~a 188 (249)
T PF02571_consen 117 SYEEAAELLKELGGGRIFLTTGSKNLPPFVPAPL-----PGERLFARVLPTPESALGFPPKNIIAM---QGPFSKELNRA 188 (249)
T ss_pred CHHHHHHHHhhcCCCCEEEeCchhhHHHHhhccc-----CCCEEEEEECCCccccCCCChhhEEEE---eCCCCHHHHHH
Confidence 3556677777777 67666666655555533 10 1234555566655430 0111111000 00111334457
Q ss_pred hhhhCCCCEEEeCCCch----hhHHHHHHcCCCeEEE
Q 048562 100 LLVDSRPDCIVHDMFHH----WSADVINSMNIPRIVF 132 (464)
Q Consensus 100 ~l~~~~pD~Vi~D~~~~----~~~~~A~~~giP~v~~ 132 (464)
++++.+.|+||+-.... .=..+|+.+|||+|.+
T Consensus 189 l~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 189 LFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred HHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 78889999999987633 3455899999999998
No 434
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=28.69 E-value=3.1e+02 Score=27.35 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=28.2
Q ss_pred HHHHHHhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEe
Q 048562 94 QEPLKSLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFN 133 (464)
Q Consensus 94 ~~~l~~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~ 133 (464)
...+.+.+++.+||++|.+.. ....++.+|+|++.+.
T Consensus 337 ~~~~~~~~~~~~pdl~ig~~~---~~~~~~~~~ip~~~~~ 373 (399)
T cd00316 337 LEELEELIRELKPDLIIGGSK---GRYIAKKLGIPLVRIG 373 (399)
T ss_pred HHHHHHHHhhcCCCEEEECCc---HHHHHHHhCCCEEEcC
Confidence 355667788889999999964 3456777899998764
No 435
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=28.66 E-value=1.1e+02 Score=27.97 Aligned_cols=39 Identities=10% Similarity=-0.020 Sum_probs=27.6
Q ss_pred CcEEEEEcCC----CccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 7 PVEMFFFPYV----GGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 7 ~~~vl~~~~~----~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
|.||+++..+ ......=++.--..|.+.|++|+++++..
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3577777641 22344556677889999999999999854
No 436
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=28.63 E-value=55 Score=31.75 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 44 (464)
|+||.|+-.+..| ..+|..|+++||+|+++...
T Consensus 1 mmkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 4689999776655 46788899999999988764
No 437
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=28.58 E-value=4e+02 Score=26.22 Aligned_cols=41 Identities=10% Similarity=0.134 Sum_probs=34.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcch
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHA 47 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 47 (464)
...|.+...++-|--.-+-.|+..|.++|+.|.+++.+...
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s 96 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS 96 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 45577788889999999999999999999999999876543
No 438
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.40 E-value=1.2e+02 Score=29.32 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=39.7
Q ss_pred HHhcccCceeeccccchhhHHHHHH----cCCceeecccccccchhHHHHHhhhcceEEeccccccCCCCCCCCccChHH
Q 048562 333 LILEHTAVGGFMTHCGWNSTLESVS----AGVPMVTWPITAEQFSNEKLISDVLKIGVKVGSVNWVSWSTEPSAAVGRDK 408 (464)
Q Consensus 333 ~lL~~~~~~~~ItHGG~~s~~Eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~~~~~~~ 408 (464)
++...+++ +|+=||=||++.+.+ .++|++++-. - + +|--. .++.++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~--------G----~--lGFL~--------------~~~~~~ 113 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQ--------G----H--LGFLT--------------QIPREY 113 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEec--------C----C--CeEee--------------ccCHHH
Confidence 33334555 999999999999965 3789888731 1 1 23333 357788
Q ss_pred HHHHHHHHhcC
Q 048562 409 VEVAVKRLMGT 419 (464)
Q Consensus 409 l~~ai~~il~~ 419 (464)
+.+++++++++
T Consensus 114 ~~~~l~~i~~g 124 (296)
T PRK04539 114 MTDKLLPVLEG 124 (296)
T ss_pred HHHHHHHHHcC
Confidence 88999998875
No 439
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=28.37 E-value=1.6e+02 Score=28.20 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=17.2
Q ss_pred hhHHHHHHhhhhCCCCEEEe
Q 048562 92 MLQEPLKSLLVDSRPDCIVH 111 (464)
Q Consensus 92 ~~~~~l~~~l~~~~pD~Vi~ 111 (464)
.....+.++|++.+||+||.
T Consensus 110 e~~~~l~~~Ir~~~PdvViT 129 (284)
T TIGR03445 110 EAAGALVAVIREVRPHVVVT 129 (284)
T ss_pred HHHHHHHHHHHHhCCcEEEe
Confidence 35688889999999999996
No 440
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=28.27 E-value=1.6e+02 Score=26.30 Aligned_cols=69 Identities=14% Similarity=0.122 Sum_probs=42.6
Q ss_pred cEEEEEcCCCcc--CHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCccc
Q 048562 8 VEMFFFPYVGGG--HQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSAT 85 (464)
Q Consensus 8 ~~vl~~~~~~~G--H~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (464)
++||+..++-.+ ..||...++++|..... . +..+....+|.
T Consensus 1 ~~vLvTGF~PF~~~~~NpS~~~v~~L~~~~~----------------~-------~~~i~~~~lpv-------------- 43 (194)
T cd00501 1 KKVLVTGFGPFGGEPVNPSWEAVKELPKLIL----------------G-------GAEVVGLELPV-------------- 43 (194)
T ss_pred CEEEEEecCCCCCCCCChHHHHHHhcccccc----------------C-------CcEEEEEEcCc--------------
Confidence 467777766332 47899999999976432 0 11233344441
Q ss_pred HHHHHhhhHHHHHHhhhhCCCCEEEeCCCch
Q 048562 86 PRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH 116 (464)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~ 116 (464)
......+.+.+++.+.+||+||+=....
T Consensus 44 ---~y~~~~~~~~~~~~~~~pd~vlhlG~~~ 71 (194)
T cd00501 44 ---VFQKAVEVLPELIEEHKPDLVIHVGLAG 71 (194)
T ss_pred ---cHHHHHHHHHHHHHHhCCCEEEEecccC
Confidence 1223455677778888999999875543
No 441
>PRK06835 DNA replication protein DnaC; Validated
Probab=28.24 E-value=70 Score=31.45 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=34.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhh
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQ 51 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~ 51 (464)
..++|+..+|.|-..=...||++|.++|+.|.|++.....+.+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 45777777788888888899999999999999998876544443
No 442
>PLN02735 carbamoyl-phosphate synthase
Probab=28.22 E-value=4.2e+02 Score=30.89 Aligned_cols=39 Identities=10% Similarity=0.105 Sum_probs=30.2
Q ss_pred CcEEEEEcCCC--ccCH----HHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 7 PVEMFFFPYVG--GGHQ----IPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 7 ~~~vl~~~~~~--~GH~----~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
+.|||++..+. .|+. +....++++|.+.||+|..+.+..
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np 67 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNP 67 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCc
Confidence 56899998764 3433 457889999999999999887654
No 443
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=28.19 E-value=3.8e+02 Score=26.50 Aligned_cols=62 Identities=6% Similarity=0.068 Sum_probs=44.4
Q ss_pred CcccHHHHhcccCceeecc------ccchhhHHHHHHcCCceee-cccccccchhHHHHHhhhcceEEe
Q 048562 327 GWAPQLLILEHTAVGGFMT------HCGWNSTLESVSAGVPMVT-WPITAEQFSNEKLISDVLKIGVKV 388 (464)
Q Consensus 327 ~~vpq~~lL~~~~~~~~It------HGG~~s~~Eal~~GvP~v~-~P~~~DQ~~na~~v~~~~G~G~~l 388 (464)
.|-...+++..+++.++.+ +-+.--+.+++.+|+.+++ =|+..++-.-...++++.|+=..+
T Consensus 52 ~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v 120 (343)
T TIGR01761 52 LYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLV 120 (343)
T ss_pred ccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4667788888888877764 2335678889999999999 888766666666665565655444
No 444
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=28.14 E-value=1.1e+02 Score=29.08 Aligned_cols=42 Identities=10% Similarity=0.176 Sum_probs=33.6
Q ss_pred hHHHHHHhhhhCCCCEEEeCCC-----ch-hhHHHHHHcCCCeEEEec
Q 048562 93 LQEPLKSLLVDSRPDCIVHDMF-----HH-WSADVINSMNIPRIVFNG 134 (464)
Q Consensus 93 ~~~~l~~~l~~~~pD~Vi~D~~-----~~-~~~~~A~~~giP~v~~~~ 134 (464)
....+.+.++...+|+|++.-. +. .+..+|+.+|+|++.+..
T Consensus 99 ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 99 TAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 4677888889999999998543 22 588899999999998743
No 445
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=28.12 E-value=4.4e+02 Score=23.55 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=24.5
Q ss_pred CCCCEEEeCCCch--hhHHHHHHcCCCeEEEecc
Q 048562 104 SRPDCIVHDMFHH--WSADVINSMNIPRIVFNGN 135 (464)
Q Consensus 104 ~~pD~Vi~D~~~~--~~~~~A~~~giP~v~~~~~ 135 (464)
..||+||.-...- .+..=|..+|||.|.+.-+
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dt 159 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDT 159 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 5799988876433 5677788899999998544
No 446
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=28.04 E-value=74 Score=32.97 Aligned_cols=46 Identities=11% Similarity=0.050 Sum_probs=36.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
..||++...++.+ .+-...+++.|.++||+|.++.++.-...+...
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 5778777765444 558999999999999999999998776666543
No 447
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=28.00 E-value=4.2e+02 Score=30.73 Aligned_cols=98 Identities=8% Similarity=0.105 Sum_probs=57.4
Q ss_pred CCcEEEEEcCCCc--cCH----HHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCC
Q 048562 6 SPVEMFFFPYVGG--GHQ----IPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPD 79 (464)
Q Consensus 6 ~~~~vl~~~~~~~--GH~----~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 79 (464)
...|||++..+.. |+- +.++.++++|++.||+|.++...... +.. ++.... .+
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npet--vs~----------d~~~~D-----~l---- 611 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPET--VST----------DYDTSD-----RL---- 611 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCcc--ccc----------cccccc-----eE----
Confidence 3568999887643 331 45789999999999999988765321 110 111000 00
Q ss_pred CCCcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCchh---hHHHHHHcCCCeEEE
Q 048562 80 TDMSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHHW---SADVINSMNIPRIVF 132 (464)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~~---~~~~A~~~giP~v~~ 132 (464)
.+. ....+.+.++++..++|.||....... .+...+..|+|++..
T Consensus 612 --y~e------p~~~e~vl~i~~~e~idgVI~~~gg~~~~~la~~le~~Gi~i~G~ 659 (1050)
T TIGR01369 612 --YFE------PLTFEDVMNIIELEKPEGVIVQFGGQTPLNLAKALEEAGVPILGT 659 (1050)
T ss_pred --EEe------cCCHHHHHHHHhhcCCCEEEEccCcHhHHHHHHHHHHCCCcEECC
Confidence 000 012466777888899999996543222 223344578887753
No 448
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=27.98 E-value=3.5e+02 Score=27.98 Aligned_cols=99 Identities=16% Similarity=0.031 Sum_probs=57.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
..|||+...+ .+ .+.+++++.+.|+++..+.+.......... .--..+.++.. . ...+
T Consensus 2 ~~kvLi~~~g---ei--a~~ii~a~~~~Gi~~v~v~~~~d~~a~~~~--------~aD~~~~i~~~--------~-~~~y 59 (472)
T PRK07178 2 IKKILIANRG---EI--AVRIVRACAEMGIRSVAIYSEADRHALHVK--------RADEAYSIGAD--------P-LAGY 59 (472)
T ss_pred CcEEEEECCc---HH--HHHHHHHHHHcCCeEEEEeCCCccCCccHh--------hCCEEEEcCCC--------c-hhhh
Confidence 3578887443 22 678999999999999888776432111110 00122233210 0 0001
Q ss_pred HHHHhhhHHHHHHhhhhCCCCEEEeCCCc----hhhHHHHHHcCCCeEEE
Q 048562 87 RTDTSMLQEPLKSLLVDSRPDCIVHDMFH----HWSADVINSMNIPRIVF 132 (464)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~----~~~~~~A~~~giP~v~~ 132 (464)
.-.+.+.++.++.+.|+|+....+ .....+++.+|+|++.-
T Consensus 60 -----~d~~~i~~~a~~~~~D~I~pg~g~lse~~~~a~~~e~~Gi~~igp 104 (472)
T PRK07178 60 -----LNPRRLVNLAVETGCDALHPGYGFLSENAELAEICAERGIKFIGP 104 (472)
T ss_pred -----cCHHHHHHHHHHHCCCEEEeCCCCcccCHHHHHHHHHcCCCccCC
Confidence 014567778888999999975321 12445777889998753
No 449
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=27.91 E-value=75 Score=26.75 Aligned_cols=29 Identities=14% Similarity=0.157 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCcEEEEeCCcchhhhhhh
Q 048562 25 VDIARIFAAHGAKSTIITSPKHALSFQKS 53 (464)
Q Consensus 25 l~la~~L~~rGh~Vt~~~~~~~~~~~~~~ 53 (464)
.-+|..|++.||+|++++.....+.+.+.
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~~~~~~~~~ 39 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSPRLEAIKEQ 39 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHHHHHHHHHH
T ss_pred HHHHHHHHHCCCceEEEEccccHHhhhhe
Confidence 34789999999999999998744445544
No 450
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=27.85 E-value=1.4e+02 Score=24.28 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=33.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 9 EMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 9 ~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
||++..-++.|-......+++.|+++|.+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999887765
No 451
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=27.78 E-value=3.7e+02 Score=23.98 Aligned_cols=62 Identities=10% Similarity=0.036 Sum_probs=39.9
Q ss_pred cE-EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcch---hhhhhhhhhccCCCCCeEEEEec
Q 048562 8 VE-MFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHA---LSFQKSINRNQQSGLPITIKTLH 70 (464)
Q Consensus 8 ~~-vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~ 70 (464)
.| |+|+..++.-|-.-+..+++.|++.|..|.+++-.... +.++.... ....+.+..++.+|
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~-~~~~~~~s~~~~~~ 173 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFID-AVNGKDGSHLVSVP 173 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHH-HhcCCCCceEEEeC
Confidence 35 77777777778777889999999999999988754333 33332222 12223356666665
No 452
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=27.74 E-value=5.9e+02 Score=26.82 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=24.9
Q ss_pred HhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEE
Q 048562 99 SLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVF 132 (464)
Q Consensus 99 ~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~ 132 (464)
+.+++.+||++|..... ..+|+++|||++-.
T Consensus 392 ~~l~~~~~Dllig~s~~---~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 392 EAMEMLKPDIILTGKRP---GEVSKKMRVPYLNA 422 (513)
T ss_pred HHHHhcCCCEEEecCcc---chhHhhcCCCEEEc
Confidence 56678899999998653 25799999999875
No 453
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=27.73 E-value=6.7e+02 Score=26.04 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.6
Q ss_pred CccCHHHHHHHHHHHHhCCCcEEEEeC
Q 048562 17 GGGHQIPMVDIARIFAAHGAKSTIITS 43 (464)
Q Consensus 17 ~~GH~~p~l~la~~L~~rGh~Vt~~~~ 43 (464)
.-|-..-+..|++.|+++|++|..+=+
T Consensus 9 ~vGKT~v~~~L~~~l~~~G~~v~~fKp 35 (475)
T TIGR00313 9 SAGKSTLTAGLCRILARRGYRVAPFKS 35 (475)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence 567778899999999999999998755
No 454
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=27.73 E-value=94 Score=28.08 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=32.5
Q ss_pred hhHHHHHHhhhhCCCCEEEeCCCc------hhhHHHHHHcCCCeEEE
Q 048562 92 MLQEPLKSLLVDSRPDCIVHDMFH------HWSADVINSMNIPRIVF 132 (464)
Q Consensus 92 ~~~~~l~~~l~~~~pD~Vi~D~~~------~~~~~~A~~~giP~v~~ 132 (464)
.+...+.+++++..||+|+.-... ..+..+|.++|.|+++=
T Consensus 95 ~~a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvsd 141 (202)
T cd01714 95 ATAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQITY 141 (202)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccce
Confidence 346667777887789999998765 36888999999998863
No 455
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=27.64 E-value=66 Score=25.57 Aligned_cols=31 Identities=10% Similarity=0.235 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCcchhhhhh
Q 048562 22 IPMVDIARIFAAHGAKSTIITSPKHALSFQK 52 (464)
Q Consensus 22 ~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (464)
.|.+.|+++|.++|.+|.++=+--.......
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~ 47 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKE 47 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHh
Confidence 6999999999999999998877655444444
No 456
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=27.62 E-value=76 Score=31.10 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=29.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
|++|.++-.+++| .+||..|+++||+|++.+...
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCH
Confidence 4678888888887 589999999999999998753
No 457
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=27.61 E-value=60 Score=28.33 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKH 46 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 46 (464)
+..+|.++-++++||. -|.-|++.|++|++...+..
T Consensus 3 ~~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s 38 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGS 38 (165)
T ss_dssp CTSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTC
T ss_pred CCCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCC
Confidence 3568999999999985 57889999999998876654
No 458
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=27.30 E-value=4.6e+02 Score=26.87 Aligned_cols=97 Identities=14% Similarity=0.029 Sum_probs=55.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchh--hhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcc
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHAL--SFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSA 84 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 84 (464)
|.|||++. .|.+ .+.+++++++.|++|..+.+..... .+... + .++.++ | . ..
T Consensus 2 ~kkili~g---~g~~--~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~a---------D-~~~~~~-~------~-~~-- 56 (449)
T TIGR00514 2 LDKILIAN---RGEI--ALRILRACKELGIKTVAVHSTADRDALHVLLA---------D-EAVCIG-P------A-PS-- 56 (449)
T ss_pred cceEEEeC---CCHH--HHHHHHHHHHcCCeEEEEEChhhhcccccccC---------C-EEEEcC-C------C-Cc--
Confidence 56888883 3433 6788889999999999887642211 11100 1 222221 0 0 00
Q ss_pred cHHHHHhhh-HHHHHHhhhhCCCCEEEeCCCc---h-hhHHHHHHcCCCeEEE
Q 048562 85 TPRTDTSML-QEPLKSLLVDSRPDCIVHDMFH---H-WSADVINSMNIPRIVF 132 (464)
Q Consensus 85 ~~~~~~~~~-~~~l~~~l~~~~pD~Vi~D~~~---~-~~~~~A~~~giP~v~~ 132 (464)
....+ .+.+.++.++.++|+|+--..+ . ....+++.+|+|++.-
T Consensus 57 ----~~~y~d~~~l~~~a~~~~id~I~pg~g~~se~~~~a~~~e~~Gi~~~g~ 105 (449)
T TIGR00514 57 ----AKSYLNIPNIISAAEITGADAIHPGYGFLSENANFAEQCERSGFTFIGP 105 (449)
T ss_pred ----hhchhCHHHHHHHHHHhCCCEEEeCCCccccCHHHHHHHHHCCCcEECc
Confidence 00111 3567788888999999865411 1 2345778889988763
No 459
>PRK12827 short chain dehydrogenase; Provisional
Probab=27.26 E-value=3.3e+02 Score=24.61 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEe
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIIT 42 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~ 42 (464)
.+++++. ++.|.+- ..+|+.|+++||+|+++.
T Consensus 6 ~~~ilIt--Gasg~iG--~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 6 SRRVLIT--GGSGGLG--RAIAVRLAADGADVIVLD 37 (249)
T ss_pred CCEEEEE--CCCChHH--HHHHHHHHHCCCeEEEEc
Confidence 3455544 3445543 588999999999998765
No 460
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=26.90 E-value=1e+02 Score=29.14 Aligned_cols=35 Identities=11% Similarity=0.227 Sum_probs=29.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEe
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIIT 42 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~ 42 (464)
+.|.|.--||-|-..-.+.||..|+++|++|.++=
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD 36 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVG 36 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEe
Confidence 44666666688999999999999999999999983
No 461
>KOG4417 consensus Predicted endonuclease [General function prediction only]
Probab=26.84 E-value=73 Score=28.77 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=28.7
Q ss_pred hhHHHHHHhhh---hCCCCEEEeCCCch-------hhHHHHHHcCCCeEEEe
Q 048562 92 MLQEPLKSLLV---DSRPDCIVHDMFHH-------WSADVINSMNIPRIVFN 133 (464)
Q Consensus 92 ~~~~~l~~~l~---~~~pD~Vi~D~~~~-------~~~~~A~~~giP~v~~~ 133 (464)
.+.+-++.... ++++|++++|.... .++.+.-..|+|.|.+.
T Consensus 99 v~l~~L~~v~~erh~fr~dvilvDGnG~lHprGfGlACHlGvL~~lp~iGVa 150 (261)
T KOG4417|consen 99 VMLDFLKSVITERHEFRPDVILVDGNGELHPRGFGLACHLGVLSGLPSIGVA 150 (261)
T ss_pred HHHHHHHhcccccCCccccEEEEcCCceEcccccchhhhhhHhcCCCccchh
Confidence 34555555553 37899999998632 35556667789999873
No 462
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=26.82 E-value=5.3e+02 Score=27.23 Aligned_cols=34 Identities=9% Similarity=0.087 Sum_probs=27.2
Q ss_pred HhhhhCCCCEEEeCCCchhhHHHHHHcCCCeEEEecc
Q 048562 99 SLLVDSRPDCIVHDMFHHWSADVINSMNIPRIVFNGN 135 (464)
Q Consensus 99 ~~l~~~~pD~Vi~D~~~~~~~~~A~~~giP~v~~~~~ 135 (464)
+.+++..+++||+|.. +..+|+++|++.|.+.+.
T Consensus 139 ~~l~~~G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 139 NDLRARGIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHCCCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 4455688999999952 567899999999988764
No 463
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=26.54 E-value=1e+02 Score=26.00 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=29.7
Q ss_pred CcEEEEecCCCCCCCHHhHHHHHHHHhhCCCceEEEEc
Q 048562 252 NSVLYISFGSLARLSPEQLLEIAYGLEASNHSFIWVVG 289 (464)
Q Consensus 252 ~~~V~vs~GS~~~~~~~~~~~~~~al~~~~~~~v~~~~ 289 (464)
..+|++++||......+.++++++.+. .+.++++...
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 459999999999878888899988884 3577777654
No 464
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=26.52 E-value=73 Score=31.13 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 44 (464)
++||.|+-.|..| ..+|..|+++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 5689999877666 46899999999999999874
No 465
>PRK13236 nitrogenase reductase; Reviewed
Probab=26.45 E-value=1.3e+02 Score=28.93 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITS 43 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 43 (464)
|..|.|..-||-|-..-.+.||..|+++|++|.++-.
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~ 42 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGC 42 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 5556666677999999999999999999999999843
No 466
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=26.37 E-value=5e+02 Score=27.11 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=66.3
Q ss_pred EEecCcccHHHHh---cccCceeecc--ccchh-hHHHHHHcCC----ceeecccccccchhHHHHHhhhcceEEecccc
Q 048562 323 LIIRGWAPQLLIL---EHTAVGGFMT--HCGWN-STLESVSAGV----PMVTWPITAEQFSNEKLISDVLKIGVKVGSVN 392 (464)
Q Consensus 323 v~v~~~vpq~~lL---~~~~~~~~It--HGG~~-s~~Eal~~Gv----P~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 392 (464)
+.+.+.+|+.++. ..+++ ++|| .-|+| .-.|.++++. |+|.--+.+ |. +.+.=++.++.
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa---~~l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA---VELKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch---hhcCCCEEECC--
Confidence 4556778876644 44776 3444 45877 4459999987 444432211 11 24444677765
Q ss_pred ccCCCCCCCCccChHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 048562 393 WVSWSTEPSAAVGRDKVEVAVKRLMGTGEEAAEMRRRAGELGEKAKNAVEEGGSSFIDAEALLQELKSV 461 (464)
Q Consensus 393 ~~~~~~~~~~~~~~~~l~~ai~~il~~~~~~~~~~~~a~~l~~~~~~~~~~gg~~~~~~~~l~~~~~~~ 461 (464)
.+.++++++|.+.|+.+. ++-++|.+++.+..+. .. ...=++.++++|...
T Consensus 433 -----------~d~~~~A~ai~~AL~m~~--~Er~~R~~~l~~~v~~---~d--~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 433 -----------YDPVRMDETIYVALAMPK--AEQQARMREMFDAVNY---YD--VQRWADEFLAAVSPQ 483 (487)
T ss_pred -----------CCHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHhh---CC--HHHHHHHHHHHhhhc
Confidence 589999999999999751 2345555555555552 22 233347788777653
No 467
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=26.31 E-value=97 Score=31.85 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcch
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHA 47 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 47 (464)
++||+++..+..| +++++.|.++|++|++.-.....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCCc
Confidence 8899999999777 89999999999999998654443
No 468
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.22 E-value=1.3e+02 Score=27.19 Aligned_cols=37 Identities=14% Similarity=-0.077 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 5 SSPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 5 ~~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
++++++++. ++.|++ -..|++.|.++||+|+.++...
T Consensus 4 ~~~~~vlIt--Gasg~i--G~~l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 4 LMGRVALVT--GAARGL--GRAIALRLARAGADVVVHYRSD 40 (249)
T ss_pred CCCCEEEEe--CCCchH--HHHHHHHHHHCCCeEEEEeCCC
Confidence 445677764 345554 4678999999999987755543
No 469
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=26.07 E-value=5.1e+02 Score=23.65 Aligned_cols=121 Identities=7% Similarity=0.094 Sum_probs=60.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccH
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATP 86 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (464)
..|.+.+++--.-+-.-.-.|...|.+.|...||+......+.-.....+....|..+.-+++..+.-... ....+
T Consensus 35 ~~k~VaLTFDDGp~~~~t~~lL~~L~~~~vkATFFv~G~~~~~~p~~ir~i~~~GheIgnHt~~H~~~~~l----s~~~~ 110 (224)
T TIGR02884 35 SKKVIYLTFDNGYENGYTPKILDVLKEKKVPAAFFVTGHYIKTQPDLIKRMVDEGHIVGNHSVHHPSLTAV----NDEKF 110 (224)
T ss_pred CCCEEEEEEECCCCccchHHHHHHHHHcCCCeEEEeechhhHHCHHHHHHHHHcCCEeeecCccCcCcccC----CHHHH
Confidence 34566667652222222346889999999999999877665433333333333455555555532210001 11223
Q ss_pred HHHHhhhHHHHHHhhhhCCCCEEEeCCCc---hhhHHHHHHcCCCeEEE
Q 048562 87 RTDTSMLQEPLKSLLVDSRPDCIVHDMFH---HWSADVINSMNIPRIVF 132 (464)
Q Consensus 87 ~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~---~~~~~~A~~~giP~v~~ 132 (464)
...+......+.+++....+. .+.-++. .....+++.+|..++..
T Consensus 111 ~~ei~~~~~~i~~~~G~~~~~-~fR~P~G~~~~~~~~~l~~~Gy~~v~w 158 (224)
T TIGR02884 111 KEELTGVEEEFKKVTGQKEMK-YFRPPRGVFSERTLAYTKELGYYTVFW 158 (224)
T ss_pred HHHHHHHHHHHHHHhCCCCCC-EEeCCCCCcCHHHHHHHHHcCCcEEec
Confidence 333334445555554322132 2333322 24566777788877653
No 470
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=26.01 E-value=3e+02 Score=27.74 Aligned_cols=70 Identities=14% Similarity=0.145 Sum_probs=48.1
Q ss_pred HHhcccCceeeccccchhhHHHHHHcCCceeecccccccchhHHHHHhhhcce-EEeccccccCCCCCCCCccChHHHHH
Q 048562 333 LILEHTAVGGFMTHCGWNSTLESVSAGVPMVTWPITAEQFSNEKLISDVLKIG-VKVGSVNWVSWSTEPSAAVGRDKVEV 411 (464)
Q Consensus 333 ~lL~~~~~~~~ItHGG~~s~~Eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G-~~l~~~~~~~~~~~~~~~~~~~~l~~ 411 (464)
.++.++++ +|. .=+-++.-|+..|+|.+.+ .-|+.+.... +++|+- ..++.. .++.+.+..
T Consensus 281 ~~l~~~dl--~Vg-~R~HsaI~al~~g~p~i~i---~Y~~K~~~l~-~~~gl~~~~~~i~-----------~~~~~~l~~ 342 (385)
T COG2327 281 GILAACDL--IVG-MRLHSAIMALAFGVPAIAI---AYDPKVRGLM-QDLGLPGFAIDID-----------PLDAEILSA 342 (385)
T ss_pred HHhccCce--EEe-ehhHHHHHHHhcCCCeEEE---eecHHHHHHH-HHcCCCcccccCC-----------CCchHHHHH
Confidence 35555554 331 2255788899999999998 4455666666 688774 334444 789999999
Q ss_pred HHHHHhcCC
Q 048562 412 AVKRLMGTG 420 (464)
Q Consensus 412 ai~~il~~~ 420 (464)
.+.+.+.+-
T Consensus 343 ~~~e~~~~~ 351 (385)
T COG2327 343 VVLERLTKL 351 (385)
T ss_pred HHHHHHhcc
Confidence 999888764
No 471
>PRK04940 hypothetical protein; Provisional
Probab=25.90 E-value=1.8e+02 Score=25.80 Aligned_cols=31 Identities=19% Similarity=0.264 Sum_probs=25.4
Q ss_pred CCCEEEeCCCch-hhHHHHHHcCCCeEEEecc
Q 048562 105 RPDCIVHDMFHH-WSADVINSMNIPRIVFNGN 135 (464)
Q Consensus 105 ~pD~Vi~D~~~~-~~~~~A~~~giP~v~~~~~ 135 (464)
++++||...... ++..+|.++|+|.|.++|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 567888776654 7999999999999999765
No 472
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=25.87 E-value=4.3e+02 Score=23.94 Aligned_cols=19 Identities=26% Similarity=0.087 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCcEEEEeC
Q 048562 25 VDIARIFAAHGAKSTIITS 43 (464)
Q Consensus 25 l~la~~L~~rGh~Vt~~~~ 43 (464)
..+++.|+++|++|.+...
T Consensus 16 ~~la~~l~~~g~~v~~~~~ 34 (248)
T PRK06947 16 RATAVLAAARGWSVGINYA 34 (248)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 5689999999999876543
No 473
>PLN02240 UDP-glucose 4-epimerase
Probab=25.83 E-value=1e+02 Score=30.06 Aligned_cols=33 Identities=15% Similarity=0.100 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITS 43 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 43 (464)
+++|++. |+.|.+ -..|++.|.++||+|+.+..
T Consensus 5 ~~~vlIt--GatG~i--G~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVT--GGAGYI--GSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCEEEEE--CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 4566654 455655 34678999999999998853
No 474
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=25.72 E-value=1.1e+02 Score=24.27 Aligned_cols=38 Identities=21% Similarity=0.192 Sum_probs=29.6
Q ss_pred HHHHHHhhhhCCCCEEEeCCCch---hhHHHHHHcCCCeEE
Q 048562 94 QEPLKSLLVDSRPDCIVHDMFHH---WSADVINSMNIPRIV 131 (464)
Q Consensus 94 ~~~l~~~l~~~~pD~Vi~D~~~~---~~~~~A~~~giP~v~ 131 (464)
...+.++.++.+.|+||..+-.+ ...+..+..|||++.
T Consensus 51 ~~~l~~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 51 PEELADFAKENKIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp HHHHHHHHHHTTESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred HHHHHHHHHHcCCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 46677888899999999998655 567777888999864
No 475
>PLN02293 adenine phosphoribosyltransferase
Probab=25.54 E-value=1.8e+02 Score=26.00 Aligned_cols=42 Identities=2% Similarity=-0.088 Sum_probs=30.9
Q ss_pred hhhHHHHHHhhhhCCCCEEEeCCCc--hhhHHHHHHcCCCeEEE
Q 048562 91 SMLQEPLKSLLVDSRPDCIVHDMFH--HWSADVINSMNIPRIVF 132 (464)
Q Consensus 91 ~~~~~~l~~~l~~~~pD~Vi~D~~~--~~~~~~A~~~giP~v~~ 132 (464)
..+.+.+.+.+++.++|+|++=... ..+..+|..+|+|++.+
T Consensus 48 ~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~ 91 (187)
T PLN02293 48 KDTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFVPL 91 (187)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEEEE
Confidence 3445666666777789999875432 36888999999998875
No 476
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=25.53 E-value=86 Score=28.54 Aligned_cols=38 Identities=21% Similarity=0.410 Sum_probs=27.3
Q ss_pred HhhhhCCCCEEEeCCCc--hhhHHHHHHcCCCeEEEeccc
Q 048562 99 SLLVDSRPDCIVHDMFH--HWSADVINSMNIPRIVFNGNC 136 (464)
Q Consensus 99 ~~l~~~~pD~Vi~D~~~--~~~~~~A~~~giP~v~~~~~~ 136 (464)
+.+...+||+||..... .....-....++|++.+....
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 55667899999998877 345666667899999986654
No 477
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=25.46 E-value=1.7e+02 Score=26.16 Aligned_cols=41 Identities=7% Similarity=0.117 Sum_probs=31.0
Q ss_pred hhHHHHHHhhhhCCCCEEEeCCCc--hhhHHHHHHcCCCeEEE
Q 048562 92 MLQEPLKSLLVDSRPDCIVHDMFH--HWSADVINSMNIPRIVF 132 (464)
Q Consensus 92 ~~~~~l~~~l~~~~pD~Vi~D~~~--~~~~~~A~~~giP~v~~ 132 (464)
.+...+.+.+++..+|.|+.=..- +.+..+|..+|+|++.+
T Consensus 60 ~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~v 102 (187)
T PRK13810 60 LIARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIV 102 (187)
T ss_pred HHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEE
Confidence 345556666777789999987654 35777889999999987
No 478
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.45 E-value=1e+02 Score=28.65 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=24.2
Q ss_pred HhhhhCCCCEEEeCCCchh--hHH-HHHHcCCCeEEEec
Q 048562 99 SLLVDSRPDCIVHDMFHHW--SAD-VINSMNIPRIVFNG 134 (464)
Q Consensus 99 ~~l~~~~pD~Vi~D~~~~~--~~~-~A~~~giP~v~~~~ 134 (464)
|.|.+.+||+||....... ... +.+.+|+|++.+..
T Consensus 68 E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 68 EKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred HHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEec
Confidence 5556789999998755432 223 33448999988854
No 479
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=25.42 E-value=1.1e+02 Score=26.46 Aligned_cols=34 Identities=12% Similarity=-0.058 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCC
Q 048562 6 SPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 6 ~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 44 (464)
+..+|+++..+.. ....++.|.+.||+|+++.+.
T Consensus 12 ~~~~vlVvGGG~v-----a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKI-----AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHH-----HHHHHHHHHhCCCEEEEEcCc
Confidence 4577888866533 367899999999999999644
No 480
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=25.36 E-value=1.4e+02 Score=28.78 Aligned_cols=38 Identities=3% Similarity=-0.063 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCcc-C---HHHHHHHHHHHHhCCCcEEEEeC
Q 048562 6 SPVEMFFFPYVGGG-H---QIPMVDIARIFAAHGAKSTIITS 43 (464)
Q Consensus 6 ~~~~vl~~~~~~~G-H---~~p~l~la~~L~~rGh~Vt~~~~ 43 (464)
+|+||+++..+..+ | +.....++++|.+.||+|.++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 47789888876322 3 23567789999999999987753
No 481
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=25.31 E-value=70 Score=29.16 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=20.7
Q ss_pred CCCCEEEeCCCch---hhHHHH----HHcCCCeEEEe
Q 048562 104 SRPDCIVHDMFHH---WSADVI----NSMNIPRIVFN 133 (464)
Q Consensus 104 ~~pD~Vi~D~~~~---~~~~~A----~~~giP~v~~~ 133 (464)
..||+|++|.+.. -.+.+| -.+++|+|.+.
T Consensus 92 ~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVA 128 (208)
T cd06559 92 TKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVA 128 (208)
T ss_pred CCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEE
Confidence 4699999998754 133344 44678999983
No 482
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=25.27 E-value=1.2e+02 Score=22.92 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=28.0
Q ss_pred cEEEEEcCCCc--cCHHHHHHHHHHHHhCCCcEEEEeC
Q 048562 8 VEMFFFPYVGG--GHQIPMVDIARIFAAHGAKSTIITS 43 (464)
Q Consensus 8 ~~vl~~~~~~~--GH~~p~l~la~~L~~rGh~Vt~~~~ 43 (464)
-+|.++|.... .+..-...++..|++.|..|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 46788887643 4667789999999999999988543
No 483
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=25.27 E-value=78 Score=22.84 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCcEEEEeCCc
Q 048562 24 MVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 24 ~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
-+..|..|+++|++|+++-...
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHCCCcEEEEecCc
Confidence 3667899999999999986543
No 484
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=25.11 E-value=3.9e+02 Score=31.07 Aligned_cols=98 Identities=7% Similarity=0.034 Sum_probs=58.1
Q ss_pred CCcEEEEEcCCCc--cC----HHHHHHHHHHHHhCCCcEEEEeCCcchhhhhhhhhhccCCCCCeEEEEecCCCCCCCCC
Q 048562 6 SPVEMFFFPYVGG--GH----QIPMVDIARIFAAHGAKSTIITSPKHALSFQKSINRNQQSGLPITIKTLHLPDDIEIPD 79 (464)
Q Consensus 6 ~~~~vl~~~~~~~--GH----~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 79 (464)
.+.|||++-.+.. |+ =+-++.++++|++.||+|.++...... +.. .+.+.. .+
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~npet--vs~----------~~~~aD-----~~---- 612 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNPET--VST----------DYDTAD-----RL---- 612 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCccc--ccc----------ccccCc-----eE----
Confidence 4678988877532 22 247889999999999999988765421 100 110000 00
Q ss_pred CCCcccHHHHHhhhHHHHHHhhhhCCCCEEEeCCCch---hhHHHHHHcCCCeEEE
Q 048562 80 TDMSATPRTDTSMLQEPLKSLLVDSRPDCIVHDMFHH---WSADVINSMNIPRIVF 132 (464)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~D~~~~---~~~~~A~~~giP~v~~ 132 (464)
.+. ....+.+.++++..++|.||...... ......+.+|+|++..
T Consensus 613 --y~e------p~~~e~vl~I~~~e~~dgVI~~~g~~~~~~la~~le~~Gi~ilG~ 660 (1068)
T PRK12815 613 --YFE------PLTLEDVLNVAEAENIKGVIVQFGGQTAINLAKGLEEAGLTILGT 660 (1068)
T ss_pred --EEc------cCCHHHHHHHHhhcCCCEEEEecCcHHHHHHHHHHHHCCCeEECC
Confidence 000 01246677888999999999743221 3334455678887653
No 485
>PRK05541 adenylylsulfate kinase; Provisional
Probab=25.06 E-value=4.5e+02 Score=22.64 Aligned_cols=43 Identities=9% Similarity=0.109 Sum_probs=33.5
Q ss_pred CCCCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeC
Q 048562 1 MDSKSSPVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITS 43 (464)
Q Consensus 1 m~~~~~~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~ 43 (464)
|++..++.-|+|...++.|--...-.|++.|..+|..+.++..
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 6665556667777777999988888899999888888777643
No 486
>PRK10818 cell division inhibitor MinD; Provisional
Probab=24.84 E-value=1.1e+02 Score=28.78 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=30.1
Q ss_pred cEEEE--EcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCc
Q 048562 8 VEMFF--FPYVGGGHQIPMVDIARIFAAHGAKSTIITSPK 45 (464)
Q Consensus 8 ~~vl~--~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~ 45 (464)
+|++- ..-||-|=..-.+.||..|+++|++|.++=...
T Consensus 2 ~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~ 41 (270)
T PRK10818 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41 (270)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 45433 335689999999999999999999999886554
No 487
>PRK04148 hypothetical protein; Provisional
Probab=24.79 E-value=1.5e+02 Score=24.98 Aligned_cols=32 Identities=9% Similarity=0.005 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCC
Q 048562 7 PVEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 7 ~~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 44 (464)
..|++.+..| .| ..+|..|++.||+|+.+=..
T Consensus 17 ~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 17 NKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred CCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 4678888776 33 24688889999999977543
No 488
>PRK06128 oxidoreductase; Provisional
Probab=24.76 E-value=3.4e+02 Score=25.85 Aligned_cols=19 Identities=26% Similarity=0.174 Sum_probs=15.9
Q ss_pred HHHHHHHHhCCCcEEEEeC
Q 048562 25 VDIARIFAAHGAKSTIITS 43 (464)
Q Consensus 25 l~la~~L~~rGh~Vt~~~~ 43 (464)
..+|+.|+++|++|.+...
T Consensus 69 ~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 69 RATAIAFAREGADIALNYL 87 (300)
T ss_pred HHHHHHHHHcCCEEEEEeC
Confidence 5789999999999987643
No 489
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=24.61 E-value=3.8e+02 Score=21.65 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=54.1
Q ss_pred cCHHHHHHHHHHHHhC--CCcEEEEeCCcchhhhhh-hhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHhhhHH
Q 048562 19 GHQIPMVDIARIFAAH--GAKSTIITSPKHALSFQK-SINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTSMLQE 95 (464)
Q Consensus 19 GH~~p~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (464)
++=.-++.+++.|.+- |+++. +| ....+.+++ . |..++.+.+. + .. -.+
T Consensus 9 ~dK~~~~~~a~~~~~ll~Gf~i~-AT-~gTa~~L~~~~-------Gi~v~~vk~~-~----------~~--------g~~ 60 (115)
T cd01422 9 NKKEDLVEFVKQHQELLSRHRLV-AT-GTTGLLIQEAT-------GLTVNRMKSG-P----------LG--------GDQ 60 (115)
T ss_pred cchHHHHHHHHHHHHHhcCCEEE-Ee-chHHHHHHHhh-------CCcEEEEecC-C----------CC--------chh
Confidence 3445678999999999 99973 44 444455555 4 3333332210 0 00 135
Q ss_pred HHHHhhhhCCCCEEEeCCC--c-----h---hhHHHHHHcCCCeEEE
Q 048562 96 PLKSLLVDSRPDCIVHDMF--H-----H---WSADVINSMNIPRIVF 132 (464)
Q Consensus 96 ~l~~~l~~~~pD~Vi~D~~--~-----~---~~~~~A~~~giP~v~~ 132 (464)
.+.+++++.+.|+||.-.- . . .....|-..+||+++.
T Consensus 61 ~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~Tt 107 (115)
T cd01422 61 QIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLATN 107 (115)
T ss_pred HHHHHHHcCceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEEc
Confidence 6778888899999987753 1 1 2445688889999985
No 490
>PRK08939 primosomal protein DnaI; Reviewed
Probab=24.56 E-value=93 Score=30.24 Aligned_cols=45 Identities=20% Similarity=0.381 Sum_probs=35.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhh
Q 048562 8 VEMFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQK 52 (464)
Q Consensus 8 ~~vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (464)
.-+++...+|.|-..-+.+||.+|.++|+.|.|+..+.+...+..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN 201 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH
Confidence 357777777888888899999999999999999988755444443
No 491
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=24.46 E-value=1e+02 Score=29.95 Aligned_cols=39 Identities=5% Similarity=-0.130 Sum_probs=29.4
Q ss_pred cEEEEEcCC---CccCHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 048562 8 VEMFFFPYV---GGGHQIPMVDIARIFAAHGAKSTIITSPKH 46 (464)
Q Consensus 8 ~~vl~~~~~---~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~ 46 (464)
|||+|+.-| -.-+.+-...|..+.++|||+|.++.+...
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l 42 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDL 42 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhhe
Confidence 367666653 334455788999999999999999988754
No 492
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.45 E-value=1.2e+02 Score=28.08 Aligned_cols=40 Identities=15% Similarity=0.015 Sum_probs=25.7
Q ss_pred CCCCCCCcEEEEEcCCCc-cCHHHHHHHHHHHHhCCCcEEEEeC
Q 048562 1 MDSKSSPVEMFFFPYVGG-GHQIPMVDIARIFAAHGAKSTIITS 43 (464)
Q Consensus 1 m~~~~~~~~vl~~~~~~~-GH~~p~l~la~~L~~rGh~Vt~~~~ 43 (464)
|+..++. |+++++..+. +- --..+|++|+++|++|.+...
T Consensus 1 ~~~~l~~-k~~lItGas~~~g--IG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 1 MSGILSG-KKIVVMGVANKRS--IAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CccccCC-CEEEEeCCCCCCc--hHHHHHHHHHHCCCEEEEecC
Confidence 5555543 4555555442 22 237899999999999987654
No 493
>COG1036 Archaeal flavoproteins [Energy production and conversion]
Probab=24.40 E-value=1.3e+02 Score=26.26 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=35.5
Q ss_pred CCCCCC-CcEEEEEcCCCccCHHH-HHHHHHHHHhC--CCcEEEEeCCcchhhhh
Q 048562 1 MDSKSS-PVEMFFFPYVGGGHQIP-MVDIARIFAAH--GAKSTIITSPKHALSFQ 51 (464)
Q Consensus 1 m~~~~~-~~~vl~~~~~~~GH~~p-~l~la~~L~~r--Gh~Vt~~~~~~~~~~~~ 51 (464)
|++.-+ .+|| -+..-+.||..+ ...+-++|.++ +|+|+.+.+....+.++
T Consensus 1 ~~~~~~~~~rI-aWgITGaG~~L~Et~~imk~lk~~~~~~~v~v~lSkageeVvk 54 (187)
T COG1036 1 MEMTEKKKKRI-AWGITGAGHLLPETYQIMKELKKEYGDVEVDVFLSKAGEEVVK 54 (187)
T ss_pred CcccccccceE-EEEEeccccccHHHHHHHHHHHhhcCCceEEEeehhhHHHHHH
Confidence 444332 3344 455668888876 88999999998 89999998876655443
No 494
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=24.36 E-value=2.1e+02 Score=24.80 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=21.0
Q ss_pred ceeeccccc------hhhHHHHHHcCCceeeccc
Q 048562 340 VGGFMTHCG------WNSTLESVSAGVPMVTWPI 367 (464)
Q Consensus 340 ~~~~ItHGG------~~s~~Eal~~GvP~v~~P~ 367 (464)
..++++|.| .+++.+|...++|+|++.-
T Consensus 65 ~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 65 PGVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ceEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 334788876 4588899999999999874
No 495
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=24.27 E-value=1.4e+02 Score=25.13 Aligned_cols=42 Identities=17% Similarity=0.043 Sum_probs=32.9
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcchhhhhh
Q 048562 11 FFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHALSFQK 52 (464)
Q Consensus 11 l~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~~~~~~ 52 (464)
.++..+..--+++..-++...++.|++|+++-+.-....+.+
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~TfwGL~~l~K 48 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFTFWGLMALRK 48 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEeHHHHHHhhc
Confidence 455566888899999999999999999999887544444444
No 496
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=24.21 E-value=2.6e+02 Score=24.05 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=20.8
Q ss_pred ceeeccccc------hhhHHHHHHcCCceeecc
Q 048562 340 VGGFMTHCG------WNSTLESVSAGVPMVTWP 366 (464)
Q Consensus 340 ~~~~ItHGG------~~s~~Eal~~GvP~v~~P 366 (464)
..++++|.| .+.+.||...++|||++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 344666666 457889999999999996
No 497
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=24.16 E-value=1.4e+02 Score=29.32 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=31.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCcEEEEeCCcch
Q 048562 10 MFFFPYVGGGHQIPMVDIARIFAAHGAKSTIITSPKHA 47 (464)
Q Consensus 10 vl~~~~~~~GH~~p~l~la~~L~~rGh~Vt~~~~~~~~ 47 (464)
++++..++.|-..-++.++.+.+++|..|.|+..+...
T Consensus 58 teI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~ 95 (321)
T TIGR02012 58 IEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHAL 95 (321)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchh
Confidence 45666679999999999999999999999999876543
No 498
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=24.12 E-value=3.8e+02 Score=24.45 Aligned_cols=92 Identities=12% Similarity=0.054 Sum_probs=51.9
Q ss_pred CCccCHHHHH---HHHHHHHhCCCcEEEEeCCcc-hhhhhhhhhhccCCCCCeEEEEecCCCCCCCCCCCCcccHHHHHh
Q 048562 16 VGGGHQIPMV---DIARIFAAHGAKSTIITSPKH-ALSFQKSINRNQQSGLPITIKTLHLPDDIEIPDTDMSATPRTDTS 91 (464)
Q Consensus 16 ~~~GH~~p~l---~la~~L~~rGh~Vt~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (464)
+-.||+.+++ -+++.|..+|++|.|+++-.. -+.+.....+. +.. ...+. +
T Consensus 34 ~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~-----g~~-----------------p~e~~---~ 88 (213)
T cd00672 34 AHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREE-----GLS-----------------WKEVA---D 88 (213)
T ss_pred cccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHc-----CCC-----------------HHHHH---H
Confidence 4678988754 357778889999999986433 23333321110 111 11222 2
Q ss_pred hhHHHHHHhhhh---CCCCEEEeCCCchhhHHHHHHcCCCeEEE
Q 048562 92 MLQEPLKSLLVD---SRPDCIVHDMFHHWSADVINSMNIPRIVF 132 (464)
Q Consensus 92 ~~~~~l~~~l~~---~~pD~Vi~D~~~~~~~~~A~~~giP~v~~ 132 (464)
.....+++.++. ..||..+--++.-|++.+.+.+|-|+=+.
T Consensus 89 ~~~~~f~~~~~~l~i~~~d~~~rtWh~ec~am~~~~lg~~~dih 132 (213)
T cd00672 89 YYTKEFFEDMKALNVLPPDVVPRVWHIECSAMAMKYLGETFDIH 132 (213)
T ss_pred HHHHHHHHHHHHcCCCCCCcceeehhHHHHHHHHHHcCCCccEE
Confidence 234444444444 33476666655558888888888665443
No 499
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=24.05 E-value=3.5e+02 Score=24.62 Aligned_cols=40 Identities=8% Similarity=0.123 Sum_probs=27.1
Q ss_pred HHHHHhhhhCCCCEEEeCCCch-hhHHHHHHcCCCeEEEec
Q 048562 95 EPLKSLLVDSRPDCIVHDMFHH-WSADVINSMNIPRIVFNG 134 (464)
Q Consensus 95 ~~l~~~l~~~~pD~Vi~D~~~~-~~~~~A~~~giP~v~~~~ 134 (464)
..+.+.+++.+||++++-.+.. ....+-+.+...++-+++
T Consensus 68 ~~~~~~l~~~~~Dliv~agy~~il~~~~l~~~~~~~iNiHp 108 (207)
T PLN02331 68 DELVDALRGAGVDFVLLAGYLKLIPVELVRAYPRSILNIHP 108 (207)
T ss_pred HHHHHHHHhcCCCEEEEeCcchhCCHHHHhhCCCCEEEEeC
Confidence 4566778889999999986654 444555555556666643
No 500
>CHL00175 minD septum-site determining protein; Validated
Probab=24.04 E-value=1.3e+02 Score=28.47 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=31.3
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCcEEEEeCC
Q 048562 6 SPVEMFFFPY--VGGGHQIPMVDIARIFAAHGAKSTIITSP 44 (464)
Q Consensus 6 ~~~~vl~~~~--~~~GH~~p~l~la~~L~~rGh~Vt~~~~~ 44 (464)
+|.+++.+.. ||-|=..-...||..|+++|++|.++-.+
T Consensus 13 ~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D 53 (281)
T CHL00175 13 TMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 53 (281)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3566766664 48888899999999999999999988544
Done!