BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048563
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9N289|A4GAT_PONPY Lactosylceramide 4-alpha-galactosyltransferase (Fragment) OS=Pongo
pygmaeus GN=A4GALT PE=3 SV=1
Length = 218
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 29/149 (19%)
Query: 3 KGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT------- 55
+G +P L+ + ++S R+AL++KFGGIYLD + IVL+NL L N +G Q+
Sbjct: 28 QGRWEPYLLPVLSDAS---RIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSRYVLNGA 84
Query: 56 VDSETKNHTRL------------NNVWGHNDLYLVSRVVVR-------VNGRTRFNFTVL 96
+ + H + +WGH L++RV + R T L
Sbjct: 85 FLAFQRRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTL 144
Query: 97 PPSAFYPVDWRRVQSFFMRPRNEQHSKLL 125
PP AFYP+ W+ + +F E+ +LL
Sbjct: 145 PPEAFYPIPWQDWKKYFEDISPEELPRLL 173
>sp|Q9N291|A4GAT_PANTR Lactosylceramide 4-alpha-galactosyltransferase OS=Pan troglodytes
GN=A4GALT PE=3 SV=1
Length = 353
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 3 KGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT------- 55
+G +P L+ + ++S R+AL++KFGGIYLD + IVL+NL L N +G Q+
Sbjct: 163 QGRWEPYLLPVLSDAS---RIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSRYVLNGA 219
Query: 56 VDSETKNHTRL------------NNVWGHNDLYLVSRVVVR-------VNGRTRFNFTVL 96
+ + H + +WGH L++RV + R+ T L
Sbjct: 220 FLAFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKWCSIRSLAESRSCRGVTTL 279
Query: 97 PPSAFYPVDWRRVQSFFMRPRNEQHSKLL 125
PP AFYP+ W+ + +F E+ +LL
Sbjct: 280 PPEAFYPIPWQDWKKYFEDINPEELPRLL 308
>sp|Q67BJ4|A4GAT_MOUSE Lactosylceramide 4-alpha-galactosyltransferase OS=Mus musculus
GN=A4galt PE=2 SV=1
Length = 359
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 26/134 (19%)
Query: 18 SNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT--------VDSETKN------- 62
S+ R+ALL+KFGGIYLD + IVL+NL L NT+G Q+ + E K+
Sbjct: 181 SDASRIALLWKFGGIYLDTDFIVLKNLLNLTNTLGIQSRYVLNGAFLAFERKHEFLALCL 240
Query: 63 HTRLNN----VWGHNDLYLVSRVVVRVNGRTRFN-------FTVLPPSAFYPVDWRRVQS 111
H + N +WGH L++RV + T LPP AFYP+ W+ +
Sbjct: 241 HDFVANYNGWIWGHQGPQLLTRVFKKWCSIQSLEKSHACRGVTALPPEAFYPIPWQNWKK 300
Query: 112 FFMRPRNEQHSKLL 125
+F E+ ++LL
Sbjct: 301 YFEDISPEELTQLL 314
>sp|Q9NPC4|A4GAT_HUMAN Lactosylceramide 4-alpha-galactosyltransferase OS=Homo sapiens
GN=A4GALT PE=2 SV=1
Length = 353
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 29/149 (19%)
Query: 3 KGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT------- 55
+G +P L+ + ++S R+AL++KFGGIYLD + IVL+NL L N +G Q+
Sbjct: 163 QGRWEPYLLPVLSDAS---RIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSRYVLNGA 219
Query: 56 VDSETKNHTRL------------NNVWGHNDLYLVSRVVVR-------VNGRTRFNFTVL 96
+ + H + +WGH L++RV + R T L
Sbjct: 220 FLAFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTL 279
Query: 97 PPSAFYPVDWRRVQSFFMRPRNEQHSKLL 125
PP AFYP+ W+ + +F E+ +LL
Sbjct: 280 PPEAFYPIPWQDWKKYFEDINPEELPRLL 308
>sp|Q9JI93|A4GAT_RAT Lactosylceramide 4-alpha-galactosyltransferase OS=Rattus norvegicus
GN=A4galt PE=1 SV=1
Length = 360
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 29/145 (20%)
Query: 7 DPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT-------VDSE 59
+P L+ + ++S R+ALL+KFGGIYLD + IVL+NL L N +G Q+ +
Sbjct: 174 EPYLLPVLSDAS---RIALLWKFGGIYLDTDFIVLKNLRNLTNMLGIQSRYVLNGAFLAF 230
Query: 60 TKNHTRL------------NNVWGHNDLYLVSRVVVRV-------NGRTRFNFTVLPPSA 100
+ H L +WGH L++RV + R T LPP A
Sbjct: 231 ERKHEFLALCIRDFVAHYNGWIWGHQGPQLLTRVFKKWCSIHSLKESRACRGVTALPPEA 290
Query: 101 FYPVDWRRVQSFFMRPRNEQHSKLL 125
FYP+ W+ + +F E+ ++LL
Sbjct: 291 FYPIPWQNWKKYFEDVSPEELAQLL 315
>sp|Q9N290|A4GAT_GORGO Lactosylceramide 4-alpha-galactosyltransferase (Fragment)
OS=Gorilla gorilla gorilla GN=A4GALT PE=3 SV=1
Length = 327
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 29/149 (19%)
Query: 3 KGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQT---VDSE 59
+G +P L+ + ++S R+AL++KFGGIYLD + IVL+NL L N +G Q+ ++
Sbjct: 137 QGRWEPYLLPVLSDAS---RIALMWKFGGIYLDTDFIVLKNLRNLTNVLGTQSRYVLNGA 193
Query: 60 TKNHTRLNN----------------VWGHNDLYLVSRVVVR-------VNGRTRFNFTVL 96
R + +WGH L++RV + R T L
Sbjct: 194 FLAFERXHEFMALCMXDFVDHYNGWIWGHQGPQLLTRVFKKWCSIRSLAESRACRGVTTL 253
Query: 97 PPSAFYPVDWRRVQSFFMRPRNEQHSKLL 125
PP AFYP+ W+ + +F E+ +L
Sbjct: 254 PPEAFYPIPWQDWKKYFEDINPEELPRLF 282
>sp|P0C8Q4|Y4990_ARATH Uncharacterized protein At4g19900 OS=Arabidopsis thaliana
GN=At4g19900 PE=2 SV=1
Length = 644
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 35/147 (23%)
Query: 18 SNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQ-TVDSETKNH------------- 63
S L+RLA LYK+GG+YLD +VIVL +LS L+NTIG + V E+ N
Sbjct: 463 SELVRLAALYKYGGVYLDSDVIVLGSLSSLRNTIGMEDQVAGESLNGAVMSFEKKSPFLL 522
Query: 64 --------TRLNNVWGHNDLYLVSRVVVR-VNGRTR----FNFTVLPPSAFYPVDWRRVQ 110
T + N L++RV R +NG+ R + P S F+P++ +++
Sbjct: 523 ECLNEYYLTYDDKCLRCNGADLLTRVAKRFLNGKNRRMNQQELNIRPSSVFFPINSQQIT 582
Query: 111 SFFMRP--------RNEQHSKLLHKKL 129
++F P ++E K+L++ L
Sbjct: 583 NYFAYPAIEDERSQQDESFKKILNESL 609
>sp|Q9UNA3|A4GCT_HUMAN Alpha-1,4-N-acetylglucosaminyltransferase OS=Homo sapiens GN=A4GNT
PE=2 SV=1
Length = 340
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 29/125 (23%)
Query: 17 SSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSET-------KNHTRL--- 66
SS+ RLA+++K+GGIY+D +VI + + + +N + AQ + +H L
Sbjct: 149 SSDASRLAIIWKYGGIYMDTDVISIRPIPE-ENFLAAQASRYSSNGIFGFLPHHPFLWEC 207
Query: 67 ---------NNVWGHNDLYLVSRVV---------VRVNGRTRFNFTVLPPSAFYPVDWRR 108
+ +WG+ L++R++ V+ N + L P FYP+ +R
Sbjct: 208 MENFVEHYNSAIWGNQGPELMTRMLRVWCKLEDFQEVSDLRCLNISFLHPQRFYPISYRE 267
Query: 109 VQSFF 113
+ ++
Sbjct: 268 WRRYY 272
>sp|Q95229|PDGFB_SHEEP Platelet-derived growth factor subunit B OS=Ovis aries GN=PDGFB
PE=2 SV=1
Length = 241
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 27/106 (25%)
Query: 41 LENLSKLKNTIGAQTVD-----SETKNHTRLNNVWGHNDLYLVSRVVVRVNGRTRFNFTV 95
LE+LS+ + ++G+ TV +E K T VS + R+ RT NF V
Sbjct: 73 LESLSRGRRSLGSPTVAEPAVIAECKTRTE------------VSEISRRLIDRTNANFLV 120
Query: 96 LPPSAFYPVDWRRVQSFF------MRPRNEQHSKLLHKKLELINKR 135
PP V+ +R RP Q K+ KK+E++ K+
Sbjct: 121 WPPC----VEVQRCSGCCNNRNVQCRPTQVQDRKVQVKKIEIVRKK 162
>sp|P38370|OAR_MYXXA Protein oar OS=Myxococcus xanthus GN=oar PE=1 SV=1
Length = 1061
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 5 NVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTVDSETKNHT 64
N D L+++ ++S N+ R GG +DP++ + S + +GA+ E +T
Sbjct: 727 NTDSNLLAIPESSRNVNRFYTGGTVGGTPVDPDI---KAQSSDEIVVGAEY---EVLANT 780
Query: 65 RLNNVWGHNDLYLVSRVVVRVNGRTRF 91
RL + H D+ V + R +G T F
Sbjct: 781 RLGASYTHKDMNSVIEDMSRDDGNTYF 807
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,271,714
Number of Sequences: 539616
Number of extensions: 1704219
Number of successful extensions: 3912
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3895
Number of HSP's gapped (non-prelim): 18
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)