Query 048563
Match_columns 135
No_of_seqs 113 out of 742
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 10:40:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048563.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048563hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1928 Alpha-1,4-N-acetylgluc 100.0 6.4E-30 1.4E-34 211.1 8.8 134 1-134 211-367 (409)
2 PF04488 Gly_transf_sug: Glyco 99.5 3.1E-14 6.7E-19 98.6 3.7 41 8-48 56-97 (103)
3 PF04572 Gb3_synth: Alpha 1,4- 99.4 1.4E-13 3.1E-18 100.2 4.0 61 68-128 24-93 (135)
4 PF05704 Caps_synth: Capsular 98.9 6.9E-10 1.5E-14 89.5 3.4 36 13-48 107-142 (276)
5 COG3774 OCH1 Mannosyltransfera 98.8 2.6E-09 5.6E-14 88.6 3.4 73 14-86 144-244 (347)
6 PF12919 TcdA_TcdB: TcdA/TcdB 98.2 1.2E-06 2.6E-11 76.1 3.3 28 13-40 205-232 (514)
7 cd00505 Glyco_transf_8 Members 87.1 0.33 7.2E-06 37.8 1.4 29 20-48 84-116 (246)
8 cd04194 GT8_A4GalT_like A4GalT 86.7 0.4 8.7E-06 37.1 1.7 32 17-48 81-116 (248)
9 PF01501 Glyco_transf_8: Glyco 86.2 0.44 9.5E-06 35.9 1.6 17 32-48 103-119 (250)
10 cd06430 GT8_like_2 GT8_like_2 85.8 0.42 9.2E-06 39.4 1.4 30 20-49 85-118 (304)
11 cd06429 GT8_like_1 GT8_like_1 85.6 0.53 1.1E-05 37.7 1.9 32 17-48 99-134 (257)
12 cd02537 GT8_Glycogenin Glycoge 84.8 0.56 1.2E-05 36.6 1.7 28 20-48 79-110 (240)
13 PLN00176 galactinol synthase 84.7 0.56 1.2E-05 39.1 1.7 28 21-48 105-133 (333)
14 cd06431 GT8_LARGE_C LARGE cata 83.7 0.64 1.4E-05 37.6 1.6 34 16-49 78-119 (280)
15 PRK15171 lipopolysaccharide 1, 82.0 0.82 1.8E-05 37.8 1.6 32 17-48 105-141 (334)
16 cd06432 GT8_HUGT1_C_like The C 81.8 0.83 1.8E-05 36.2 1.5 18 31-48 99-116 (248)
17 cd06914 GT8_GNT1 GNT1 is a fun 78.8 0.94 2E-05 36.8 1.0 29 20-48 81-112 (278)
18 KOG1928 Alpha-1,4-N-acetylgluc 78.0 0.86 1.9E-05 38.9 0.5 30 89-118 333-362 (409)
19 PLN02659 Probable galacturonos 77.7 1.4 3E-05 39.0 1.8 32 17-48 329-364 (534)
20 PLN02870 Probable galacturonos 77.4 1.4 3E-05 39.0 1.7 32 17-48 328-363 (533)
21 PLN02829 Probable galacturonos 75.9 1.6 3.5E-05 39.3 1.7 32 17-48 442-477 (639)
22 PLN02867 Probable galacturonos 74.7 1.8 3.8E-05 38.4 1.6 31 18-48 331-365 (535)
23 PLN02523 galacturonosyltransfe 73.0 2.1 4.6E-05 38.1 1.7 32 17-48 362-397 (559)
24 PLN02910 polygalacturonate 4-a 72.4 2.2 4.8E-05 38.6 1.7 33 16-48 459-495 (657)
25 PLN02769 Probable galacturonos 71.2 2.4 5.2E-05 38.2 1.6 32 17-48 437-472 (629)
26 PLN02742 Probable galacturonos 69.6 2.9 6.2E-05 37.1 1.7 32 17-48 338-373 (534)
27 PRK15382 non-LEE encoded effec 68.7 5 0.00011 32.6 2.8 29 19-47 183-230 (326)
28 PLN02718 Probable galacturonos 67.7 3.3 7.1E-05 37.3 1.7 32 17-48 403-438 (603)
29 PRK15383 type III secretion sy 67.5 5.5 0.00012 32.4 2.8 29 19-47 191-238 (335)
30 COG1442 RfaJ Lipopolysaccharid 64.5 4.1 9E-05 33.9 1.6 31 18-48 84-118 (325)
31 PRK15384 type III secretion sy 63.0 7.5 0.00016 31.7 2.8 29 19-47 188-235 (336)
32 PF07958 DUF1688: Protein of u 52.3 8.4 0.00018 33.2 1.5 21 27-47 313-333 (420)
33 COG5597 Alpha-N-acetylglucosam 47.9 6.6 0.00014 32.9 0.2 28 21-48 160-188 (368)
34 PF11051 Mannosyl_trans3: Mann 30.4 27 0.00058 27.9 1.2 18 32-49 95-112 (271)
35 PF13453 zf-TFIIB: Transcripti 30.3 22 0.00047 20.2 0.5 10 28-37 24-33 (41)
36 PF15506 OCC1: OCC1 family 27.9 29 0.00063 21.7 0.7 10 27-36 36-45 (62)
37 TIGR02543 List_Bact_rpt Lister 26.6 25 0.00055 20.5 0.3 13 27-39 6-18 (44)
38 cd00354 FBPase Fructose-1,6-bi 26.3 44 0.00096 27.6 1.8 26 7-35 223-248 (315)
39 COG2924 Uncharacterized protei 23.9 26 0.00056 23.8 -0.0 36 99-134 17-52 (90)
40 PLN02628 fructose-1,6-bisphosp 23.0 55 0.0012 27.6 1.8 25 8-35 254-278 (351)
No 1
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=99.96 E-value=6.4e-30 Score=211.11 Aligned_cols=134 Identities=47% Similarity=0.817 Sum_probs=116.0
Q ss_pred CCCCCCCCCCCCchhHHHHHHHHHHHHHcCCeEEeCCceeeecchhhhhhhhcccC-C---CCCcc-----------hhh
Q 048563 1 LKKGNVDPGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLKNTIGAQTV-D---SETKN-----------HTR 65 (135)
Q Consensus 1 ~~~~~~~~~~~~~~~~~SD~iR~~~Lyk~GGiYlD~Dv~~lk~l~~l~~~~g~e~~-~---~~~G~-----------~~~ 65 (135)
+|+|+++++++++.++.||+.|+++|||||||||||||++||++..++|.+|.... . ..+|+ +.|
T Consensus 211 ~k~g~~~~~~~~l~~~lSdl~RLA~LyKYGGvYLDTDvIvLksl~~l~N~ig~~~~~~~~~~lnnavl~F~k~Hpfl~~c 290 (409)
T KOG1928|consen 211 WKDGRLDPGKIPLLQNLSDLSRLALLYKYGGVYLDTDVIVLKSLSNLRNVIGVDPATQAWTRLNNAVLIFDKNHPFLLEC 290 (409)
T ss_pred HHhcccCCCcccchhhHHHHHHHHHHHHhCCEEeeccEEEecccccccccccccchhhHHHhhcCceeecCCCCHHHHHH
Confidence 58999999999999999999999999999999999999999999999999983322 1 22321 345
Q ss_pred hc--------ccccccchHHHHHHHHHhhCcccCceEEeCCCCcCCCCccccccccccCchhhhhhhHHHHHHhhhc
Q 048563 66 LN--------NVWGHNDLYLVSRVVVRVNGRTRFNFTVLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELINK 134 (135)
Q Consensus 66 l~--------~~~~~~gP~lltrv~~~~~~~~~~~i~i~p~~~FyPi~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 134 (135)
++ +.||++||.++|||++++|+....+.+|.|+..|||++|.+...||.-+..|-.+.|....+..+.|
T Consensus 291 l~eF~~tfNg~~WG~NGP~LvTRVakr~c~~~~~~~~i~~p~~f~~vn~~~i~~fy~iP~~ew~~~~~~~~~~~~~k 367 (409)
T KOG1928|consen 291 LREFALTYNGNIWGHNGPYLVTRVAKRWCNTKNYNLTILPPSAFYPVNWLEIQAFYAIPWTEWDRKFVDEETLKMLK 367 (409)
T ss_pred HHHHHHhccccccccCCcHHHHHHHHHHhCCCCccceecCccccCceeeeccccccccchhHhhhhhhHHHHHHHhc
Confidence 54 3899999999999999999988777889999999999999999999988888888887877777665
No 2
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=99.47 E-value=3.1e-14 Score=98.59 Aligned_cols=41 Identities=46% Similarity=0.725 Sum_probs=36.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHcCCeEEeCCceeeecc-hhhh
Q 048563 8 PGLISLGQNSSNLLRLALLYKFGGIYLDPNVIVLENL-SKLK 48 (135)
Q Consensus 8 ~~~~~~~~~~SD~iR~~~Lyk~GGiYlD~Dv~~lk~l-~~l~ 48 (135)
.......+|+||++|+++||+|||||+|+|++|+||+ +.+.
T Consensus 56 ~~~~~~~~~~sD~~R~~~L~~~GGiY~D~D~~~~rpl~~~~~ 97 (103)
T PF04488_consen 56 PGRYPNYAHKSDLLRYLVLYKYGGIYLDLDVICLRPLDDPWL 97 (103)
T ss_pred cccccchHHHHHHHHHHHHHHcCcEEEeCccccCcchhhhhh
Confidence 3455567899999999999999999999999999999 7653
No 3
>PF04572 Gb3_synth: Alpha 1,4-glycosyltransferase conserved region; InterPro: IPR007652 The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilise UDP donors and transfer the sugar to a beta-linked acceptor []. No function has been yet assigned to this domain ; GO: 0008378 galactosyltransferase activity, 0005795 Golgi stack
Probab=99.41 E-value=1.4e-13 Score=100.23 Aligned_cols=61 Identities=36% Similarity=0.703 Sum_probs=55.4
Q ss_pred ccccccchHHHHHHHHHhhCc---------ccCceEEeCCCCcCCCCccccccccccCchhhhhhhHHHH
Q 048563 68 NVWGHNDLYLVSRVVVRVNGR---------TRFNFTVLPPSAFYPVDWRRVQSFFMRPRNEQHSKLLHKK 128 (135)
Q Consensus 68 ~~~~~~gP~lltrv~~~~~~~---------~~~~i~i~p~~~FyPi~~~~~~~~f~~~~~~~~~~~~~~~ 128 (135)
+.|+.+||.++|||++++|+. .|.+++|+|+++||||+|.+|+.+|++...++..+|+.+.
T Consensus 24 ~~w~~nGP~lltRVl~~~C~~~~~~~~~~~~C~~~~vlp~~~FYPI~~~~~~~~F~~~~~~~~~~~~~~S 93 (135)
T PF04572_consen 24 NKWGHNGPDLLTRVLKKFCNTENFKDMEDNRCRGFSVLPPEAFYPIPYQDWKRFFEPPSTEEVMEWLKNS 93 (135)
T ss_pred chhcccCcHHHHHHHHHHhcCCCccccccccCCCeEEcCccceeccChhHhHHHhcCCcchHHHHHhhCc
Confidence 489999999999999999975 3678999999999999999999999999999988887643
No 4
>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins. Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae. This family is often transcribed with putative glycosyl transferases to give rise to bifunctional proteins [].
Probab=98.92 E-value=6.9e-10 Score=89.49 Aligned_cols=36 Identities=39% Similarity=0.678 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHHHHHcCCeEEeCCceeeecchhhh
Q 048563 13 LGQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 13 ~~~~~SD~iR~~~Lyk~GGiYlD~Dv~~lk~l~~l~ 48 (135)
..+|+||++|+.+|++|||+|+|++|.|.+++++..
T Consensus 107 ~~a~~SDilR~~LL~~yGGvWiDatv~~t~~l~~~~ 142 (276)
T PF05704_consen 107 SPAHFSDILRLALLYKYGGVWIDATVYLTKPLDDEI 142 (276)
T ss_pred chhHHHHHHHHHHHHHcCcEEeCCceEECCchhHHH
Confidence 358999999999999999999999999999998863
No 5
>COG3774 OCH1 Mannosyltransferase OCH1 and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.82 E-value=2.6e-09 Score=88.63 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHHHHHcCCeEEeCCceeeecchhhh----hhhhcccCCCC--------Ccc--hh----hhc--------
Q 048563 14 GQNSSNLLRLALLYKFGGIYLDPNVIVLENLSKLK----NTIGAQTVDSE--------TKN--HT----RLN-------- 67 (135)
Q Consensus 14 ~~~~SD~iR~~~Lyk~GGiYlD~Dv~~lk~l~~l~----~~~g~e~~~~~--------~G~--~~----~l~-------- 67 (135)
.+-.+|++||.+|++|||||+|+|..|+|+++++. .++..+..... +|+ +. ++.
T Consensus 144 ~~~raD~~RYfvL~~~GGIY~DiD~~~~~~id~~l~~~~~~l~~~~~~~v~n~~m~s~p~hp~~~~~i~~~~~~~~~~~p 223 (347)
T COG3774 144 GALRADFWRYFVLYHYGGIYLDIDTGLVKPIDPLLDDAEAWLRRTIPLGVGNGVMGSAPGHPFLKKMIERLPYNIIWKFP 223 (347)
T ss_pred chhhhhhHhheeeeccCcEEEeCCcccccCCcccccchHHHhhhcCCCcccchhhccCCCCchHHHHHHHhhhccccCCC
Confidence 35689999999999999999999999999999975 35555443322 233 11 111
Q ss_pred --ccccccchHHHHHHHHHhh
Q 048563 68 --NVWGHNDLYLVSRVVVRVN 86 (135)
Q Consensus 68 --~~~~~~gP~lltrv~~~~~ 86 (135)
..+..+||.+++.+.+++.
T Consensus 224 ~~ti~~stGp~iL~~i~~~~~ 244 (347)
T COG3774 224 YWTIQASTGPLILSEIHSAYT 244 (347)
T ss_pred ceeeecCCCChhHHHHHHHhh
Confidence 2567899999999999864
No 6
>PF12919 TcdA_TcdB: TcdA/TcdB catalytic glycosyltransferase domain; InterPro: IPR024770 Toxins A (TcdA) and B (TcdB) of Clostridium difficile belong to the family of clostridial glucosylating toxins. These toxins glucosylate small GTPases of Rho and Ras families, inhibiting the signalling and regulatory functions of these switch proteins. After receptor-binding, the toxins are endocytosed to reach acidic endosomal compartments from where the toxins are translocated into the cytosol []. TcdB has been shown to consist of a N-terminal glucosyltransferase domain (GTD), responsible for the biological effects of the toxin, a cysteine protease domain (CPD), responsible for autocatalytic cleavage, a hydrophobic region (HR), which has been suggested to be involved in toxin translocation, and a C-terminal repetitive domain involved in receptor binding. The pore-forming region of toxin B has been described to be in a region in the middle of the protein, within amino acid residues 830 and 990 []. This entry represents the N-terminal glucosyltransferase domain from TcdA and TcdB. It is also found in other toxins. The GTD of TcdB has been shown to glycosylate the host's RhoA protein [].; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 2BVL_A 2BVM_A 2VKH_C 2VL8_A 2VKD_A 3SS1_A 3SRZ_A 2VK9_A.
Probab=98.17 E-value=1.2e-06 Score=76.13 Aligned_cols=28 Identities=39% Similarity=0.702 Sum_probs=22.9
Q ss_pred chhHHHHHHHHHHHHHcCCeEEeCCcee
Q 048563 13 LGQNSSNLLRLALLYKFGGIYLDPNVIV 40 (135)
Q Consensus 13 ~~~~~SD~iR~~~Lyk~GGiYlD~Dv~~ 40 (135)
..|-.||.+|+.+|+++||||+|+|+.+
T Consensus 205 N~AAASDilRl~iL~~~GGIY~D~D~LP 232 (514)
T PF12919_consen 205 NYAAASDILRLYILKEYGGIYLDVDMLP 232 (514)
T ss_dssp -HHHHHHHHHHHHHHHH-EEEE-TT-EE
T ss_pred ChhhHHHHHHHHHHHHhCCEEEecccCC
Confidence 4688999999999999999999999887
No 7
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=87.11 E-value=0.33 Score=37.77 Aligned_cols=29 Identities=28% Similarity=0.470 Sum_probs=22.0
Q ss_pred HHHHHHHHHcC----CeEEeCCceeeecchhhh
Q 048563 20 LLRLALLYKFG----GIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 20 ~iR~~~Lyk~G----GiYlD~Dv~~lk~l~~l~ 48 (135)
+.|+.+-.-.. =+|||+|+++++++++|.
T Consensus 84 y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~ 116 (246)
T cd00505 84 LTKLHLPNLVPDYDKILYVDADILVLTDIDELW 116 (246)
T ss_pred eHHHHHHHHhhccCeEEEEcCCeeeccCHHHHh
Confidence 57776633222 279999999999999985
No 8
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=86.74 E-value=0.4 Score=37.13 Aligned_cols=32 Identities=34% Similarity=0.477 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcC----CeEEeCCceeeecchhhh
Q 048563 17 SSNLLRLALLYKFG----GIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 17 ~SD~iR~~~Lyk~G----GiYlD~Dv~~lk~l~~l~ 48 (135)
.+=+.|+.+-.-.. =+|||+|+++++++++|.
T Consensus 81 ~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~ 116 (248)
T cd04194 81 YATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELF 116 (248)
T ss_pred HHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHh
Confidence 35677888877666 479999999999999985
No 9
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=86.15 E-value=0.44 Score=35.90 Aligned_cols=17 Identities=41% Similarity=0.780 Sum_probs=13.9
Q ss_pred eEEeCCceeeecchhhh
Q 048563 32 IYLDPNVIVLENLSKLK 48 (135)
Q Consensus 32 iYlD~Dv~~lk~l~~l~ 48 (135)
+|||+|++++++++.|.
T Consensus 103 lyLD~D~lv~~dl~~lf 119 (250)
T PF01501_consen 103 LYLDADTLVLGDLDELF 119 (250)
T ss_dssp EEE-TTEEESS-SHHHH
T ss_pred EEEcCCeeeecChhhhh
Confidence 79999999999999984
No 10
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=85.76 E-value=0.42 Score=39.38 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=22.3
Q ss_pred HHHHHH---HHH-cCCeEEeCCceeeecchhhhh
Q 048563 20 LLRLAL---LYK-FGGIYLDPNVIVLENLSKLKN 49 (135)
Q Consensus 20 ~iR~~~---Lyk-~GGiYlD~Dv~~lk~l~~l~~ 49 (135)
|.|+.+ |-. -==+|||+|++|+.|+++|.+
T Consensus 85 y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~ 118 (304)
T cd06430 85 AQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWS 118 (304)
T ss_pred HHHHHHHHHhhhhceEEEeccceeecCCHHHHHH
Confidence 677654 222 245899999999999999854
No 11
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=85.56 E-value=0.53 Score=37.68 Aligned_cols=32 Identities=38% Similarity=0.473 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHc----CCeEEeCCceeeecchhhh
Q 048563 17 SSNLLRLALLYKF----GGIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 17 ~SD~iR~~~Lyk~----GGiYlD~Dv~~lk~l~~l~ 48 (135)
.+=+.|+.+=--. ==+|||+|++|.+++++|.
T Consensus 99 ~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~ 134 (257)
T cd06429 99 LLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELW 134 (257)
T ss_pred HHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHh
Confidence 4568888772222 2389999999999999985
No 12
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=84.84 E-value=0.56 Score=36.64 Aligned_cols=28 Identities=29% Similarity=0.572 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCC----eEEeCCceeeecchhhh
Q 048563 20 LLRLALLYKFGG----IYLDPNVIVLENLSKLK 48 (135)
Q Consensus 20 ~iR~~~Lyk~GG----iYlD~Dv~~lk~l~~l~ 48 (135)
+.|+.+. +... +|||+|+++++++++|.
T Consensus 79 ~~kl~~~-~l~~~drvlylD~D~~v~~~i~~Lf 110 (240)
T cd02537 79 YTKLRLW-NLTEYDKVVFLDADTLVLRNIDELF 110 (240)
T ss_pred hHHHHhc-cccccceEEEEeCCeeEccCHHHHh
Confidence 4565554 3334 69999999999999985
No 13
>PLN00176 galactinol synthase
Probab=84.71 E-value=0.56 Score=39.10 Aligned_cols=28 Identities=36% Similarity=0.565 Sum_probs=21.4
Q ss_pred HHHHHHHHc-CCeEEeCCceeeecchhhh
Q 048563 21 LRLALLYKF-GGIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 21 iR~~~Lyk~-GGiYlD~Dv~~lk~l~~l~ 48 (135)
+|+.-|-+| ==+|||+|++|++++|+|.
T Consensus 105 l~iw~l~~ydkvlyLDaD~lv~~nid~Lf 133 (333)
T PLN00176 105 LRIWEFVEYSKMIYLDGDIQVFENIDHLF 133 (333)
T ss_pred hhhccccccceEEEecCCEEeecChHHHh
Confidence 444444555 4589999999999999985
No 14
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=83.67 E-value=0.64 Score=37.59 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=25.1
Q ss_pred HHHHH---HHHHHHHHcC-----CeEEeCCceeeecchhhhh
Q 048563 16 NSSNL---LRLALLYKFG-----GIYLDPNVIVLENLSKLKN 49 (135)
Q Consensus 16 ~~SD~---iR~~~Lyk~G-----GiYlD~Dv~~lk~l~~l~~ 49 (135)
|.|-+ .|+.+---.. =+|||+|++|..++++|.+
T Consensus 78 ~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~ 119 (280)
T cd06431 78 HYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWK 119 (280)
T ss_pred chhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHH
Confidence 44555 6887644333 3899999999999999853
No 15
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=81.99 E-value=0.82 Score=37.81 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcC-----CeEEeCCceeeecchhhh
Q 048563 17 SSNLLRLALLYKFG-----GIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 17 ~SD~iR~~~Lyk~G-----GiYlD~Dv~~lk~l~~l~ 48 (135)
.+=|.|+.+---.- =+|||+|++|..+|++|.
T Consensus 105 ~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~ 141 (334)
T PRK15171 105 YATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELI 141 (334)
T ss_pred HHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHH
Confidence 55677875433332 379999999999999984
No 16
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=81.75 E-value=0.83 Score=36.18 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=16.4
Q ss_pred CeEEeCCceeeecchhhh
Q 048563 31 GIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 31 GiYlD~Dv~~lk~l~~l~ 48 (135)
=+|||+|++|..+|++|.
T Consensus 99 vLYLD~Dilv~~dL~eL~ 116 (248)
T cd06432 99 VIFVDADQIVRTDLKELM 116 (248)
T ss_pred EEEEcCCceecccHHHHH
Confidence 379999999999999984
No 17
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=78.82 E-value=0.94 Score=36.83 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=21.5
Q ss_pred HHHHHHHHH--c-CCeEEeCCceeeecchhhh
Q 048563 20 LLRLALLYK--F-GGIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 20 ~iR~~~Lyk--~-GGiYlD~Dv~~lk~l~~l~ 48 (135)
+.|+.+.-- | ==+|||+|++|+++++.|.
T Consensus 81 ~tKl~~~~l~~y~kvlyLDaD~l~~~~ideLf 112 (278)
T cd06914 81 LTKLRAFNQTEYDRIIYFDSDSIIRHPMDELF 112 (278)
T ss_pred HHHHHhccccceeeEEEecCChhhhcChHHHh
Confidence 666665422 1 2379999999999999984
No 18
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=77.99 E-value=0.86 Score=38.88 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=25.7
Q ss_pred ccCceEEeCCCCcCCCCccccccccccCch
Q 048563 89 TRFNFTVLPPSAFYPVDWRRVQSFFMRPRN 118 (135)
Q Consensus 89 ~~~~i~i~p~~~FyPi~~~~~~~~f~~~~~ 118 (135)
.|.+|..++++.|||++|.+|+.+|.+.+.
T Consensus 333 ~f~~vn~~~i~~fy~iP~~ew~~~~~~~~~ 362 (409)
T KOG1928|consen 333 AFYPVNWLEIQAFYAIPWTEWDRKFVDEET 362 (409)
T ss_pred ccCceeeeccccccccchhHhhhhhhHHHH
Confidence 468899999999999999999999954433
No 19
>PLN02659 Probable galacturonosyltransferase
Probab=77.70 E-value=1.4 Score=38.98 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcC----CeEEeCCceeeecchhhh
Q 048563 17 SSNLLRLALLYKFG----GIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 17 ~SD~iR~~~Lyk~G----GiYlD~Dv~~lk~l~~l~ 48 (135)
+.-++|+.+=.-+- =+|||.|++|.++|++|.
T Consensus 329 ~~nY~RL~IPeLLP~LdKVLYLD~DVVVqgDLseLw 364 (534)
T PLN02659 329 VMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLW 364 (534)
T ss_pred HHHHHHHHHHHHhhhcCeEEEeeCCEEEcCchHHHH
Confidence 45678887732222 379999999999999985
No 20
>PLN02870 Probable galacturonosyltransferase
Probab=77.38 E-value=1.4 Score=38.98 Aligned_cols=32 Identities=34% Similarity=0.429 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcC----CeEEeCCceeeecchhhh
Q 048563 17 SSNLLRLALLYKFG----GIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 17 ~SD~iR~~~Lyk~G----GiYlD~Dv~~lk~l~~l~ 48 (135)
..-++|+.+=.-+- =+|||+|++|.++|++|.
T Consensus 328 ~lny~Rl~LPelLP~LdKVLYLD~DVVVqgDLseLw 363 (533)
T PLN02870 328 LLNHLRIYLPELFPNLDKVVFLDDDVVIQRDLSPLW 363 (533)
T ss_pred HHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHh
Confidence 45788887733332 379999999999999984
No 21
>PLN02829 Probable galacturonosyltransferase
Probab=75.95 E-value=1.6 Score=39.30 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCC----eEEeCCceeeecchhhh
Q 048563 17 SSNLLRLALLYKFGG----IYLDPNVIVLENLSKLK 48 (135)
Q Consensus 17 ~SD~iR~~~Lyk~GG----iYlD~Dv~~lk~l~~l~ 48 (135)
..-|+|+.+=.-+-- ||||+|++|.++|++|.
T Consensus 442 ~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw 477 (639)
T PLN02829 442 ILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLW 477 (639)
T ss_pred HHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHH
Confidence 456789877332333 79999999999999984
No 22
>PLN02867 Probable galacturonosyltransferase
Probab=74.71 E-value=1.8 Score=38.41 Aligned_cols=31 Identities=35% Similarity=0.500 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCC----eEEeCCceeeecchhhh
Q 048563 18 SNLLRLALLYKFGG----IYLDPNVIVLENLSKLK 48 (135)
Q Consensus 18 SD~iR~~~Lyk~GG----iYlD~Dv~~lk~l~~l~ 48 (135)
--++|+.+=.-+-- +|||.|++|.++|++|.
T Consensus 331 lnYlRflIPeLLP~LdKVLYLD~DVVVqgDLseLw 365 (535)
T PLN02867 331 LNHLRIYIPELFPDLNKIVFLDDDVVVQHDLSSLW 365 (535)
T ss_pred HHHHHHHHHHHhhccCeEEEecCCEEEcCchHHHH
Confidence 35778776554443 79999999999999984
No 23
>PLN02523 galacturonosyltransferase
Probab=73.00 E-value=2.1 Score=38.08 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcC----CeEEeCCceeeecchhhh
Q 048563 17 SSNLLRLALLYKFG----GIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 17 ~SD~iR~~~Lyk~G----GiYlD~Dv~~lk~l~~l~ 48 (135)
.+-+.|+.+=.-+- =+|||+|++|.++|++|.
T Consensus 362 ~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLseLw 397 (559)
T PLN02523 362 MLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLW 397 (559)
T ss_pred HHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHHHH
Confidence 56678887643332 379999999999999985
No 24
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=72.45 E-value=2.2 Score=38.56 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHcC----CeEEeCCceeeecchhhh
Q 048563 16 NSSNLLRLALLYKFG----GIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 16 ~~SD~iR~~~Lyk~G----GiYlD~Dv~~lk~l~~l~ 48 (135)
-..-++|+.+-.-+- =+|||+|++|.++|++|.
T Consensus 459 S~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw 495 (657)
T PLN02910 459 SMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLW 495 (657)
T ss_pred hHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHH
Confidence 356778887633333 489999999999999984
No 25
>PLN02769 Probable galacturonosyltransferase
Probab=71.15 E-value=2.4 Score=38.24 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=24.4
Q ss_pred HHHHHHHHH--HHHc--CCeEEeCCceeeecchhhh
Q 048563 17 SSNLLRLAL--LYKF--GGIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 17 ~SD~iR~~~--Lyk~--GGiYlD~Dv~~lk~l~~l~ 48 (135)
...++|+.+ |... ==+|||+|++|.++|++|.
T Consensus 437 ~~nh~RfyIPELLP~LdKVLYLD~DVVVqgDLseLw 472 (629)
T PLN02769 437 VFSHSHFLLPEIFKKLKKVVVLDDDVVVQRDLSFLW 472 (629)
T ss_pred HHHHHHHHHHHHhhhcCeEEEEeCCEEecCcHHHHh
Confidence 567788877 3331 2379999999999999984
No 26
>PLN02742 Probable galacturonosyltransferase
Probab=69.63 E-value=2.9 Score=37.10 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcC----CeEEeCCceeeecchhhh
Q 048563 17 SSNLLRLALLYKFG----GIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 17 ~SD~iR~~~Lyk~G----GiYlD~Dv~~lk~l~~l~ 48 (135)
..-++|+.+-.-+- =||||+|++|.+++++|.
T Consensus 338 ~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~ 373 (534)
T PLN02742 338 MLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLF 373 (534)
T ss_pred HHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHh
Confidence 56788887743332 389999999999999984
No 27
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=68.71 E-value=5 Score=32.63 Aligned_cols=29 Identities=38% Similarity=0.653 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCC-------------------eEEeCCceeeecchhh
Q 048563 19 NLLRLALLYKFGG-------------------IYLDPNVIVLENLSKL 47 (135)
Q Consensus 19 D~iR~~~Lyk~GG-------------------iYlD~Dv~~lk~l~~l 47 (135)
|+.|-++|-|-|+ ||||+||++-..|--+
T Consensus 183 DF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLD~DMilT~KLG~l 230 (326)
T PRK15382 183 DFFRNLALLKAGELFTETGKTGCHNISPCEGCIYLDADMIITDKLGVL 230 (326)
T ss_pred HHHHHHHHHhcccceeecCCCCCcccCCCCceEEeecceeeecccccE
Confidence 8889888888654 7999999988777654
No 28
>PLN02718 Probable galacturonosyltransferase
Probab=67.70 E-value=3.3 Score=37.26 Aligned_cols=32 Identities=31% Similarity=0.346 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcC----CeEEeCCceeeecchhhh
Q 048563 17 SSNLLRLALLYKFG----GIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 17 ~SD~iR~~~Lyk~G----GiYlD~Dv~~lk~l~~l~ 48 (135)
.+-|+|+.+-.-+- =||||+|++|.++|++|.
T Consensus 403 ~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~ 438 (603)
T PLN02718 403 ALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLW 438 (603)
T ss_pred HHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHh
Confidence 45677887743332 379999999999999984
No 29
>PRK15383 type III secretion system protein; Provisional
Probab=67.49 E-value=5.5 Score=32.42 Aligned_cols=29 Identities=31% Similarity=0.565 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCC-------------------eEEeCCceeeecchhh
Q 048563 19 NLLRLALLYKFGG-------------------IYLDPNVIVLENLSKL 47 (135)
Q Consensus 19 D~iR~~~Lyk~GG-------------------iYlD~Dv~~lk~l~~l 47 (135)
|+.|-++|-|-|+ ||||+||++-..|--+
T Consensus 191 DF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLD~DMilT~KLG~l 238 (335)
T PRK15383 191 DFYRNLFLLKGSDAFLEAGKHGCHHLQPGGGCIYLDADMLLTDKLGTL 238 (335)
T ss_pred HHHHHHHHHhcccceeeccccCCcccCCCCceEEeecceeeecccccE
Confidence 8889888888654 7999999988777664
No 30
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=64.54 E-value=4.1 Score=33.87 Aligned_cols=31 Identities=39% Similarity=0.454 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHcCC----eEEeCCceeeecchhhh
Q 048563 18 SNLLRLALLYKFGG----IYLDPNVIVLENLSKLK 48 (135)
Q Consensus 18 SD~iR~~~Lyk~GG----iYlD~Dv~~lk~l~~l~ 48 (135)
+=++||.+=--+.- +|+|.|++|.++|++|.
T Consensus 84 ~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf 118 (325)
T COG1442 84 MVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELF 118 (325)
T ss_pred HHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHH
Confidence 44666666555555 99999999999999974
No 31
>PRK15384 type III secretion system protein; Provisional
Probab=63.04 E-value=7.5 Score=31.68 Aligned_cols=29 Identities=34% Similarity=0.623 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCC-------------------eEEeCCceeeecchhh
Q 048563 19 NLLRLALLYKFGG-------------------IYLDPNVIVLENLSKL 47 (135)
Q Consensus 19 D~iR~~~Lyk~GG-------------------iYlD~Dv~~lk~l~~l 47 (135)
|+.|-++|-|-|+ ||||+||++-..|--+
T Consensus 188 DF~RNlalLK~g~~F~e~~k~gch~is~~~GCIYLDaDMilT~KLG~l 235 (336)
T PRK15384 188 DFYRNMAMLKAGQLFLEADKVGCYDLSTNSGCIYLDADMIITEKLGGI 235 (336)
T ss_pred HHHHHHHHHhccceeeecCCCCCcccCCCCceEEeeccceeecccccE
Confidence 8889888888654 7899999888777654
No 32
>PF07958 DUF1688: Protein of unknown function (DUF1688); InterPro: IPR012469 A family of uncharacterised fungal proteins.
Probab=52.32 E-value=8.4 Score=33.24 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=19.0
Q ss_pred HHcCCeEEeCCceeeecchhh
Q 048563 27 YKFGGIYLDPNVIVLENLSKL 47 (135)
Q Consensus 27 yk~GGiYlD~Dv~~lk~l~~l 47 (135)
|+.||..+|+.|+.+|+-+..
T Consensus 313 YRNGGLfvD~GVL~lk~~~~~ 333 (420)
T PF07958_consen 313 YRNGGLFVDLGVLTLKPEALA 333 (420)
T ss_pred hccCceEEecceeeeCChhhh
Confidence 799999999999999987665
No 33
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=47.89 E-value=6.6 Score=32.90 Aligned_cols=28 Identities=39% Similarity=0.612 Sum_probs=22.1
Q ss_pred HHHHHHHHcCC-eEEeCCceeeecchhhh
Q 048563 21 LRLALLYKFGG-IYLDPNVIVLENLSKLK 48 (135)
Q Consensus 21 iR~~~Lyk~GG-iYlD~Dv~~lk~l~~l~ 48 (135)
+|+.-+++|-- ||||.|.+++|++|.+.
T Consensus 160 LrVfeqtEyDRvifLDsDaivlknmDklF 188 (368)
T COG5597 160 LRVFEQTEYDRVIFLDSDAIVLKNMDKLF 188 (368)
T ss_pred HHhhhhhhhceEEEeccchHHhhhhHHHh
Confidence 45556666654 79999999999999973
No 34
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=30.44 E-value=27 Score=27.85 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=16.1
Q ss_pred eEEeCCceeeecchhhhh
Q 048563 32 IYLDPNVIVLENLSKLKN 49 (135)
Q Consensus 32 iYlD~Dv~~lk~l~~l~~ 49 (135)
|+||+|.+.+++.+.|..
T Consensus 95 llLDaD~vpl~~p~~lF~ 112 (271)
T PF11051_consen 95 LLLDADNVPLVDPEKLFE 112 (271)
T ss_pred EEEcCCcccccCHHHHhc
Confidence 799999999999998754
No 35
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=30.31 E-value=22 Score=20.16 Aligned_cols=10 Identities=40% Similarity=0.933 Sum_probs=7.5
Q ss_pred HcCCeEEeCC
Q 048563 28 KFGGIYLDPN 37 (135)
Q Consensus 28 k~GGiYlD~D 37 (135)
+-||+|||.+
T Consensus 24 ~C~G~W~d~~ 33 (41)
T PF13453_consen 24 SCGGIWFDAG 33 (41)
T ss_pred CCCeEEccHH
Confidence 4589999864
No 36
>PF15506 OCC1: OCC1 family
Probab=27.95 E-value=29 Score=21.73 Aligned_cols=10 Identities=30% Similarity=0.926 Sum_probs=8.2
Q ss_pred HHcCCeEEeC
Q 048563 27 YKFGGIYLDP 36 (135)
Q Consensus 27 yk~GGiYlD~ 36 (135)
..|||+|+-+
T Consensus 36 RNYGGVYVGl 45 (62)
T PF15506_consen 36 RNYGGVYVGL 45 (62)
T ss_pred cccCCeEEeC
Confidence 5799999865
No 37
>TIGR02543 List_Bact_rpt Listeria/Bacterioides repeat. This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria.
Probab=26.63 E-value=25 Score=20.49 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=10.1
Q ss_pred HHcCCeEEeCCce
Q 048563 27 YKFGGIYLDPNVI 39 (135)
Q Consensus 27 yk~GGiYlD~Dv~ 39 (135)
|.|.|.|.|.|.-
T Consensus 6 Y~F~GWY~d~~~~ 18 (44)
T TIGR02543 6 YVFDGWYGDSAFT 18 (44)
T ss_pred cEeeeeEEcCCCC
Confidence 5678999888754
No 38
>cd00354 FBPase Fructose-1,6-bisphosphatase, an enzyme that catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway. The alignment model also includes chloroplastic FBPases and sedoheptulose-1,7-biphosphatases that play a role in pentose phosphate pathway (Calvin cycle).
Probab=26.35 E-value=44 Score=27.63 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=21.1
Q ss_pred CCCCCCchhHHHHHHHHHHHHHcCCeEEe
Q 048563 7 DPGLISLGQNSSNLLRLALLYKFGGIYLD 35 (135)
Q Consensus 7 ~~~~~~~~~~~SD~iR~~~Lyk~GGiYlD 35 (135)
.....|..+-++|+-|.++ +||||+=
T Consensus 223 ~y~~Ry~gsmVaD~hr~L~---~GGif~y 248 (315)
T cd00354 223 PYNLRYIGSMVADVHRILV---RGGIFLY 248 (315)
T ss_pred CccceeeeeeehHhHHhhh---cCeEEEc
Confidence 3456777788999999988 6999984
No 39
>COG2924 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.91 E-value=26 Score=23.76 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=30.9
Q ss_pred CCcCCCCccccccccccCchhhhhhhHHHHHHhhhc
Q 048563 99 SAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELINK 134 (135)
Q Consensus 99 ~~FyPi~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 134 (135)
--|-|++-.-.+++|+..+.+--+.|+.++--.||.
T Consensus 17 lDf~~yPGelGkrI~~~isk~aWa~W~~~QTMLINE 52 (90)
T COG2924 17 LDFQPYPGELGKRIYNNISKEAWAQWQKKQTMLINE 52 (90)
T ss_pred CCCCCCchHHHHHHHHHHhHHHHHHHHHhhheeech
Confidence 357788888899999999999999999999888885
No 40
>PLN02628 fructose-1,6-bisphosphatase family protein
Probab=22.99 E-value=55 Score=27.64 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=20.4
Q ss_pred CCCCCchhHHHHHHHHHHHHHcCCeEEe
Q 048563 8 PGLISLGQNSSNLLRLALLYKFGGIYLD 35 (135)
Q Consensus 8 ~~~~~~~~~~SD~iR~~~Lyk~GGiYlD 35 (135)
....|..+-++|+-|.++ +||||+=
T Consensus 254 y~~Ry~GsmVaD~Hr~L~---~GGif~Y 278 (351)
T PLN02628 254 YSARYICSLVADLHRTIL---YGGIAMN 278 (351)
T ss_pred ccceeeeechHHHHHHhh---cCeEEEC
Confidence 456677788999999876 6999994
Done!