Query 048563
Match_columns 135
No_of_seqs 113 out of 742
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 18:36:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vk9_A Alpha-toxin; glycosyltr 98.0 3.4E-06 1.2E-10 72.4 3.3 28 12-39 261-288 (551)
2 2bvl_A Toxin B; glycosyltransf 98.0 3.9E-06 1.3E-10 71.9 3.5 29 13-41 264-292 (543)
3 4dmv_A Toxin A, TCDA; transfer 97.8 1.2E-05 4.2E-10 68.6 3.1 34 10-43 275-308 (556)
4 1g9r_A Glycosyl transferase; a 87.0 0.25 8.5E-06 38.7 1.8 30 19-48 83-116 (311)
5 1ll2_A Glycogenin-1; protein-s 85.1 0.34 1.2E-05 38.7 1.7 30 18-48 82-115 (333)
6 3tzt_A Glycosyl transferase fa 84.0 0.42 1.5E-05 36.9 1.8 32 17-48 85-121 (276)
7 3u2u_A Glycogenin-1, GN-1, GN1 82.5 0.51 1.8E-05 36.6 1.7 18 31-48 99-116 (263)
8 3jsz_A LGT1, putative uncharac 27.8 11 0.00036 31.5 -0.5 30 13-43 224-254 (525)
9 1xs8_A UPF0269 protein YGGX; h 17.3 73 0.0025 20.9 2.1 35 100-134 18-52 (91)
10 1t07_A Hypothetical UPF0269 pr 15.0 69 0.0024 21.1 1.5 37 98-134 18-54 (94)
No 1
>2vk9_A Alpha-toxin; glycosyltransferase; 2.85A {Clostridium novyi} SCOP: c.68.1.22
Probab=97.97 E-value=3.4e-06 Score=72.35 Aligned_cols=28 Identities=36% Similarity=0.694 Sum_probs=26.1
Q ss_pred CchhHHHHHHHHHHHHHcCCeEEeCCce
Q 048563 12 SLGQNSSNLLRLALLYKFGGIYLDPNVI 39 (135)
Q Consensus 12 ~~~~~~SD~iR~~~Lyk~GGiYlD~Dv~ 39 (135)
...|..||.+|+.+|+++||||+|+|++
T Consensus 261 ~N~aaASDilR~~il~~~GGiY~D~D~l 288 (551)
T 2vk9_A 261 NNLAAASDILRIAILKKYGGVYCDLDFL 288 (551)
T ss_dssp CCHHHHHHHHHHHHHHHHCEEEECTTCB
T ss_pred cchHHHHHHHHHHHHHHhCCEEEecccc
Confidence 3568899999999999999999999998
No 2
>2bvl_A Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2.2A {Clostridium difficile} SCOP: c.68.1.22 PDB: 2bvm_A* 2vkh_A* 2vkd_A* 2vl8_A*
Probab=97.96 E-value=3.9e-06 Score=71.87 Aligned_cols=29 Identities=31% Similarity=0.537 Sum_probs=27.0
Q ss_pred chhHHHHHHHHHHHHHcCCeEEeCCceee
Q 048563 13 LGQNSSNLLRLALLYKFGGIYLDPNVIVL 41 (135)
Q Consensus 13 ~~~~~SD~iR~~~Lyk~GGiYlD~Dv~~l 41 (135)
..+..||.+|+.+|+++||||+|+|+++-
T Consensus 264 N~aaASDilR~~iL~~~GGiY~D~D~lP~ 292 (543)
T 2bvl_A 264 NLAAASDILRISALKEIGGMYLDVDMLPG 292 (543)
T ss_dssp CHHHHHHHHHHHHHHHHCEEEECTTCEEC
T ss_pred ChhhHHHHHHHHHHHHhCCeEeecccccc
Confidence 56889999999999999999999999875
No 3
>4dmv_A Toxin A, TCDA; transferase; 1.50A {Clostridium difficile} PDB: 4dmw_A* 3ss1_A 3srz_A
Probab=97.75 E-value=1.2e-05 Score=68.63 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=28.8
Q ss_pred CCCchhHHHHHHHHHHHHHcCCeEEeCCceeeec
Q 048563 10 LISLGQNSSNLLRLALLYKFGGIYLDPNVIVLEN 43 (135)
Q Consensus 10 ~~~~~~~~SD~iR~~~Lyk~GGiYlD~Dv~~lk~ 43 (135)
.....+-.||.+|+.+|+++||||+|+|+.+--+
T Consensus 275 lR~N~aaAsD~~r~~iL~~~GGiY~d~D~lP~~~ 308 (556)
T 4dmv_A 275 NRGNLAAASDIVRLLALKNFGGVYLDVDMLPGIH 308 (556)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCEEEECTTCBCCBC
T ss_pred HccChHhHHHHHHHHHHHHhCCeeeecccccccc
Confidence 3445688999999999999999999999986543
No 4
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=86.98 E-value=0.25 Score=38.69 Aligned_cols=30 Identities=33% Similarity=0.438 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCC----eEEeCCceeeecchhhh
Q 048563 19 NLLRLALLYKFGG----IYLDPNVIVLENLSKLK 48 (135)
Q Consensus 19 D~iR~~~Lyk~GG----iYlD~Dv~~lk~l~~l~ 48 (135)
=+.|+.+-.-... +|||+|++|++++++|.
T Consensus 83 ~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~ 116 (311)
T 1g9r_A 83 TYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLW 116 (311)
T ss_dssp GGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHH
T ss_pred HHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHh
Confidence 3456655433444 99999999999999985
No 5
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=85.05 E-value=0.34 Score=38.68 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCC----eEEeCCceeeecchhhh
Q 048563 18 SNLLRLALLYKFGG----IYLDPNVIVLENLSKLK 48 (135)
Q Consensus 18 SD~iR~~~Lyk~GG----iYlD~Dv~~lk~l~~l~ 48 (135)
.=+.|+.+. .... +|||+|++|++++++|.
T Consensus 82 ~t~~Kl~i~-~l~~ydrvlYLDaD~lv~~di~eLf 115 (333)
T 1ll2_A 82 VTLTKLHCW-SLTQYSKCVFMDADTLVLANIDDLF 115 (333)
T ss_dssp HHHHHGGGG-GCTTCSEEEEECTTEEECSCCGGGG
T ss_pred HHHHHHHHh-HhcCCCeEEEEeCCEEeccCHHHHh
Confidence 346676654 3444 89999999999999985
No 6
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=83.96 E-value=0.42 Score=36.94 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcC-----CeEEeCCceeeecchhhh
Q 048563 17 SSNLLRLALLYKFG-----GIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 17 ~SD~iR~~~Lyk~G-----GiYlD~Dv~~lk~l~~l~ 48 (135)
.+-+.|+.+=.-.. =+|||+|++|++++++|.
T Consensus 85 ~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~ 121 (276)
T 3tzt_A 85 KEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLL 121 (276)
T ss_dssp HHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHH
T ss_pred HHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHh
Confidence 35678887664443 389999999999999984
No 7
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=82.47 E-value=0.51 Score=36.61 Aligned_cols=18 Identities=28% Similarity=0.643 Sum_probs=16.5
Q ss_pred CeEEeCCceeeecchhhh
Q 048563 31 GIYLDPNVIVLENLSKLK 48 (135)
Q Consensus 31 GiYlD~Dv~~lk~l~~l~ 48 (135)
=+|||+|++|++++++|.
T Consensus 99 vlylD~D~~v~~~~~~Lf 116 (263)
T 3u2u_A 99 CVFMDADTLVLANIDDLF 116 (263)
T ss_dssp EEEECTTEEECSCCGGGG
T ss_pred EEEEcCCEeeccCHHHHh
Confidence 489999999999999985
No 8
>3jsz_A LGT1, putative uncharacterized protein; glucosyltransferase, legionnaire'S disease, legionella pneum transferase; HET: MSE UPG; 1.70A {Legionella pneumophila} PDB: 2wzg_A* 3jt1_A* 2wzf_A*
Probab=27.78 E-value=11 Score=31.49 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=23.4
Q ss_pred chhHHHHHHHHHH-HHHcCCeEEeCCceeeec
Q 048563 13 LGQNSSNLLRLAL-LYKFGGIYLDPNVIVLEN 43 (135)
Q Consensus 13 ~~~~~SD~iR~~~-Lyk~GGiYlD~Dv~~lk~ 43 (135)
.++-.||++|+.- +|.. |.|.|.|+-+--+
T Consensus 224 NpAaASDivRWlspv~~~-gtYtDfD~PvDts 254 (525)
T 3jsz_A 224 NPAAASDLCRWIPELFNE-GFYVDIDLPVDSS 254 (525)
T ss_dssp CHHHHHHHHTTCTTTCSS-EEEECTTCCBCGG
T ss_pred CHHHHHHHHHhhHHhccc-Cceeeeecccccc
Confidence 4678999999864 5555 9999999976543
No 9
>1xs8_A UPF0269 protein YGGX; helix-turn-helix, metal transport; NMR {Salmonella typhimurium} SCOP: d.279.1.1 PDB: 1yhd_A
Probab=17.30 E-value=73 Score=20.86 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=31.3
Q ss_pred CcCCCCccccccccccCchhhhhhhHHHHHHhhhc
Q 048563 100 AFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELINK 134 (135)
Q Consensus 100 ~FyPi~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 134 (135)
-|-|++-.-..++|+..+.+-=+.|+..+--.||.
T Consensus 18 d~~P~PGelGkrIy~~VSk~AW~~W~~~QTmLINE 52 (91)
T 1xs8_A 18 DFQLYPGELGKRIYNEISKDAWAQWQHKQTMLINE 52 (91)
T ss_dssp CCCSSCSHHHHHHHTTCBHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHhHHHHHHHHHhhHHHhhh
Confidence 47888888899999999999999999999999984
No 10
>1t07_A Hypothetical UPF0269 protein PA5148; structural genomics, APC5047, conserved hypothetical protein, PSI, protein structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa} SCOP: d.279.1.1
Probab=15.04 E-value=69 Score=21.11 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=31.7
Q ss_pred CCCcCCCCccccccccccCchhhhhhhHHHHHHhhhc
Q 048563 98 PSAFYPVDWRRVQSFFMRPRNEQHSKLLHKKLELINK 134 (135)
Q Consensus 98 ~~~FyPi~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 134 (135)
-=-|-|++-.-..++|+..+.+-=+.|+..+--.||.
T Consensus 18 GLd~~PyPGelGkrIy~~VSkeAW~~W~~~QTMLINE 54 (94)
T 1t07_A 18 GLDRPPYPGAKGEDIYNNVSRKAWDEWQKHQTMLINE 54 (94)
T ss_dssp BCSSCSSSSHHHHHHHHHCBHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHhHHHHHHHHHhhHhHhhh
Confidence 3346788888899999999999999999999999984
Done!