Your job contains 1 sequence.
>048564
MAARLFGGYRTMMAAAAKSGAEATAAAGKKAKGGIGKPVPVSAQLSKFLGANEASRSDAV
KKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKSA
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 048564
(114 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:505006294 - symbol:AT2G35605 "AT2G35605" speci... 288 2.2e-25 1
TAIR|locus:2028671 - symbol:AT1G31760 "AT1G31760" species... 274 6.8e-24 1
TAIR|locus:2096404 - symbol:AT3G03590 "AT3G03590" species... 274 6.8e-24 1
TAIR|locus:2060469 - symbol:AT2G14880 "AT2G14880" species... 233 1.5e-19 1
TAIR|locus:2116189 - symbol:AT4G34290 "AT4G34290" species... 232 1.9e-19 1
SGD|S000004846 - symbol:TRI1 "Non-essential sumoylated pr... 187 1.1e-14 1
TAIR|locus:2085894 - symbol:AT3G19080 species:3702 "Arabi... 193 1.6e-14 1
TAIR|locus:2010197 - symbol:AT1G49520 "AT1G49520" species... 179 3.1e-13 1
POMBASE|SPCC285.17 - symbol:spp27 "RNA polymerase I upstr... 173 3.4e-13 1
ASPGD|ASPL0000053508 - symbol:AN0360 species:162425 "Emer... 170 1.0e-12 1
SGD|S000005821 - symbol:UAF30 "Subunit of UAF (upstream a... 168 1.2e-12 1
TAIR|locus:2116302 - symbol:AT4G26810 "AT4G26810" species... 148 1.5e-10 1
TAIR|locus:2132055 - symbol:AT4G22360 "AT4G22360" species... 145 1.8e-09 1
UNIPROTKB|G4MMD0 - symbol:MGG_01988 "Uncharacterized prot... 141 2.4e-09 1
ASPGD|ASPL0000017588 - symbol:AN10524 species:162425 "Eme... 133 5.2e-08 1
POMBASE|SPAC23G3.10c - symbol:ssr3 "SWI/SNF and RSC compl... 117 2.4e-06 1
WB|WBGene00020779 - symbol:T24G10.2 species:6239 "Caenorh... 114 3.5e-06 1
FB|FBgn0035370 - symbol:CG1240 species:7227 "Drosophila m... 111 3.6e-06 1
TAIR|locus:2060949 - symbol:AT2G18090 "AT2G18090" species... 118 4.6e-06 1
WB|WBGene00015971 - symbol:swsn-2.2 species:6239 "Caenorh... 109 1.9e-05 1
MGI|MGI:1933623 - symbol:Smarcd1 "SWI/SNF related, matrix... 103 0.00010 1
UNIPROTKB|H9KZE0 - symbol:SMARCD1 "Uncharacterized protei... 103 0.00010 1
UNIPROTKB|F1MTG9 - symbol:SMARCD1 "SWI/SNF-related matrix... 102 0.00013 1
UNIPROTKB|Q2TBN1 - symbol:SMARCD1 "SWI/SNF-related matrix... 102 0.00013 1
UNIPROTKB|Q96GM5 - symbol:SMARCD1 "SWI/SNF-related matrix... 102 0.00013 1
RGD|1305406 - symbol:Smarcd1 "SWI/SNF related, matrix ass... 102 0.00013 1
TAIR|locus:2827287 - symbol:NERD "Needed for RDR2-indepen... 108 0.00013 1
FB|FBgn0025463 - symbol:Bap60 "Brahma associated protein ... 100 0.00021 1
WB|WBGene00044072 - symbol:ham-3 species:6239 "Caenorhabd... 99 0.00022 1
TAIR|locus:2078713 - symbol:AT3G01890 "AT3G01890" species... 99 0.00023 1
TAIR|locus:2174638 - symbol:CHC1 "AT5G14170" species:3702... 99 0.00029 1
ZFIN|ZDB-GENE-080509-2 - symbol:smarcd3b "SWI/SNF related... 96 0.00051 1
UNIPROTKB|F1NJN5 - symbol:SMARCD3 "Uncharacterized protei... 95 0.00063 1
>TAIR|locus:505006294 [details] [associations]
symbol:AT2G35605 "AT2G35605" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002685
GenomeReviews:CT485783_GR EMBL:AC006068 EMBL:AC005314
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
HOGENOM:HOG000225318 EMBL:AF370234 EMBL:AY059124 EMBL:AY088833
EMBL:AK118403 IPI:IPI00544861 RefSeq:NP_565810.1 UniGene:At.19064
ProteinModelPortal:Q93W30 SMR:Q93W30 STRING:Q93W30 PaxDb:Q93W30
PRIDE:Q93W30 EnsemblPlants:AT2G35605.1 GeneID:818127
KEGG:ath:AT2G35605 TAIR:At2g35605 InParanoid:Q93W30 OMA:AVKKIWE
PhylomeDB:Q93W30 ProtClustDB:CLSN2688164 ArrayExpress:Q93W30
Genevestigator:Q93W30 Uniprot:Q93W30
Length = 109
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 59/112 (52%), Positives = 74/112 (66%)
Query: 3 ARLFGGYRTMMXXXXXXXXXXXXXXXXXXXXXXXXPVPVSAQLSKFLGANEASRSDAVKK 62
+R+FG R +M VPVS L+ F+G NE SR+ AVKK
Sbjct: 2 SRVFGACRVLMAKAASSTGAKTGRQGTGILKV----VPVSKPLANFIGENEVSRTTAVKK 57
Query: 63 IWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKSA 114
IW+YI+ ++LQNP NKREI CD++LKTIF+GKD+VGFLEI+KLLSQHF KSA
Sbjct: 58 IWEYIKLNNLQNPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKSA 109
>TAIR|locus:2028671 [details] [associations]
symbol:AT1G31760 "AT1G31760" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002684
GenomeReviews:CT485782_GR EMBL:AC074360 EMBL:AC079041
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
HOGENOM:HOG000225318 ProtClustDB:CLSN2688164 EMBL:AY085089
EMBL:BT024754 IPI:IPI00536805 PIR:B86441 RefSeq:NP_564382.1
UniGene:At.40279 ProteinModelPortal:Q9C504 SMR:Q9C504 IntAct:Q9C504
STRING:Q9C504 PaxDb:Q9C504 PRIDE:Q9C504 EnsemblPlants:AT1G31760.1
GeneID:840063 KEGG:ath:AT1G31760 TAIR:At1g31760 InParanoid:Q9C504
OMA:GITEIMK PhylomeDB:Q9C504 Genevestigator:Q9C504 Uniprot:Q9C504
Length = 112
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 54/111 (48%), Positives = 68/111 (61%)
Query: 3 ARLFGGYRTMMXXXXXXXXXXXXXXXXXXXXXXXXPVPVSAQLSKFLGANEASRSDAVKK 62
+R+ GG+RT+M PVS QL+ F G E +R A+KK
Sbjct: 5 SRVLGGFRTLMSKAATVEAVTVAGEGKGIFKTR----PVSQQLASFAGERELTRGSALKK 60
Query: 63 IWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKS 113
+W+Y++ H+LQNPANK+EI CDDKLKTIF+GKD VG EI KLLS HF KS
Sbjct: 61 VWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPKS 111
>TAIR|locus:2096404 [details] [associations]
symbol:AT3G03590 "AT3G03590" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0006661 "phosphatidylinositol biosynthetic
process" evidence=RCA] InterPro:IPR003121 Pfam:PF02201
EMBL:CP002686 EMBL:AC009327 SUPFAM:SSF47592 InterPro:IPR019835
SMART:SM00151 EMBL:BT003701 EMBL:AK117771 IPI:IPI00546282
RefSeq:NP_566210.1 UniGene:At.40956 ProteinModelPortal:Q9SS61
SMR:Q9SS61 PRIDE:Q9SS61 EnsemblPlants:AT3G03590.1 GeneID:821215
KEGG:ath:AT3G03590 TAIR:At3g03590 InParanoid:Q9SS61 OMA:REIFCDE
PhylomeDB:Q9SS61 ProtClustDB:CLSN2917083 Genevestigator:Q9SS61
Uniprot:Q9SS61
Length = 143
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 52/75 (69%), Positives = 61/75 (81%)
Query: 40 PVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGF 99
PVS L++FLG E SR+DA+K IW YI+ HDLQNPA+KREI CD+ LK IF GKD VGF
Sbjct: 69 PVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGF 128
Query: 100 LEIAKLLSQHFVKSA 114
LEI+KLLS HFVK+A
Sbjct: 129 LEISKLLSPHFVKTA 143
>TAIR|locus:2060469 [details] [associations]
symbol:AT2G14880 "AT2G14880" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:AC005396
EMBL:CP002685 GenomeReviews:CT485783_GR SUPFAM:SSF47592
eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151 EMBL:AF370580
IPI:IPI00517159 PIR:E84522 RefSeq:NP_565366.1 UniGene:At.13059
ProteinModelPortal:O82326 SMR:O82326 STRING:O82326 PaxDb:O82326
PRIDE:O82326 EnsemblPlants:AT2G14880.1 GeneID:815977
KEGG:ath:AT2G14880 TAIR:At2g14880 HOGENOM:HOG000225318
InParanoid:O82326 OMA:QDIVELP PhylomeDB:O82326
ProtClustDB:CLSN2685737 Genevestigator:O82326 Uniprot:O82326
Length = 141
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 42/74 (56%), Positives = 56/74 (75%)
Query: 38 PVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSV 97
P PVS ++ + E +R+ A+K+IW YI++HDLQ+P NKREI CD+KLK IF G+D V
Sbjct: 68 PRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRV 127
Query: 98 GFLEIAKLLSQHFV 111
GFLEIAKL+ HF+
Sbjct: 128 GFLEIAKLIGPHFL 141
>TAIR|locus:2116189 [details] [associations]
symbol:AT4G34290 "AT4G34290" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002687
EMBL:AL035521 EMBL:AL161585 SUPFAM:SSF47592 InterPro:IPR019835
SMART:SM00151 ProtClustDB:CLSN2685737 EMBL:BT001198 IPI:IPI00535550
PIR:T04775 RefSeq:NP_195155.1 UniGene:At.2612
ProteinModelPortal:Q9SYZ4 SMR:Q9SYZ4 STRING:Q9SYZ4 PRIDE:Q9SYZ4
EnsemblPlants:AT4G34290.1 GeneID:829579 KEGG:ath:AT4G34290
TAIR:At4g34290 InParanoid:Q9SYZ4 OMA:REPRGIM PhylomeDB:Q9SYZ4
Genevestigator:Q9SYZ4 Uniprot:Q9SYZ4
Length = 144
Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 42/74 (56%), Positives = 55/74 (74%)
Query: 38 PVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSV 97
P PVS + +G E R+ A+K+IW YI++HDLQ+P NKR+I CD+KLK IF GK+ V
Sbjct: 71 PRPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERV 130
Query: 98 GFLEIAKLLSQHFV 111
GFLEIAKL+ HF+
Sbjct: 131 GFLEIAKLIGPHFL 144
>SGD|S000004846 [details] [associations]
symbol:TRI1 "Non-essential sumoylated protein of unknown
function" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005730 "nucleolus" evidence=IEA;IDA]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 SGD:S000004846
GO:GO:0005737 GO:GO:0005730 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 EMBL:BK006946 EMBL:Z49939
SUPFAM:SSF47592 InterPro:IPR014876 Pfam:PF08766 eggNOG:COG5531
InterPro:IPR019835 SMART:SM00151 EMBL:AY557975 PIR:S57600
RefSeq:NP_013960.1 ProteinModelPortal:Q05024 SMR:Q05024
DIP:DIP-1551N IntAct:Q05024 MINT:MINT-386791 STRING:Q05024
PaxDb:Q05024 PeptideAtlas:Q05024 EnsemblFungi:YMR233W GeneID:855273
KEGG:sce:YMR233W CYGD:YMR233w GeneTree:ENSGT00390000006048
HOGENOM:HOG000000765 KO:K15223 OMA:DRREILC OrthoDB:EOG486CP2
NextBio:978891 Genevestigator:Q05024 GermOnline:YMR233W
Uniprot:Q05024
Length = 226
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 38/71 (53%), Positives = 51/71 (71%)
Query: 39 VPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVG 98
V +SA L KFLG+ E R+ VK IWQYI++HDLQNP ++REI CD+K++ IF GK
Sbjct: 124 VLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF-GKKMTM 182
Query: 99 FLEIAKLLSQH 109
F + KLL++H
Sbjct: 183 F-SMNKLLTKH 192
>TAIR|locus:2085894 [details] [associations]
symbol:AT3G19080 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009506 "plasmodesma"
evidence=IDA] InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201
GO:GO:0009506 EMBL:CP002686 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF47592 InterPro:IPR014876 Pfam:PF08766 InterPro:IPR019835
SMART:SM00151 KO:K15223 IPI:IPI00544253 RefSeq:NP_188538.1
UniGene:At.53383 ProteinModelPortal:F4J9Z9 SMR:F4J9Z9 PRIDE:F4J9Z9
EnsemblPlants:AT3G19080.1 GeneID:821442 KEGG:ath:AT3G19080
OMA:PLEDNAG Uniprot:F4J9Z9
Length = 462
Score = 193 (73.0 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 37/78 (47%), Positives = 55/78 (70%)
Query: 38 PVPVSAQLSKFLG--ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKD 95
P+P+S L KFLG N SR+D VK++W+YI +DLQ+P++KR + CD+KLK +F D
Sbjct: 384 PLPLSDALVKFLGDGENSLSRADVVKRLWEYINHNDLQDPSDKRRVICDEKLKELFE-VD 442
Query: 96 SVGFLEIAKLLSQHFVKS 113
S ++KLL+ HF+K+
Sbjct: 443 SFEDTSVSKLLTNHFIKA 460
Score = 155 (59.6 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 28/69 (40%), Positives = 49/69 (71%)
Query: 41 VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
+S QL K +GA++ R++ VKK+W YIR+ DLQ+P ++R+I CD+ L ++F K ++
Sbjct: 122 LSPQLEKVVGASQLGRTEVVKKMWAYIREKDLQDPKDRRKIVCDELLHSLFRVK-TINMF 180
Query: 101 EIAKLLSQH 109
++ K L++H
Sbjct: 181 QMNKALTKH 189
Score = 140 (54.3 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 24/69 (34%), Positives = 47/69 (68%)
Query: 41 VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
+S +L F G E +R++ VK +W+YI++++LQ+P +KR I CD+ +++F +S+
Sbjct: 270 LSPELQAFTGVTELARTEVVKLLWKYIKENNLQDPNDKRSIICDESFRSLFP-VESINMF 328
Query: 101 EIAKLLSQH 109
++ K L++H
Sbjct: 329 QMNKQLTKH 337
>TAIR|locus:2010197 [details] [associations]
symbol:AT1G49520 "AT1G49520" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201
EMBL:CP002684 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF47592
InterPro:IPR014876 Pfam:PF08766 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 KO:K15223 EMBL:BT022048 IPI:IPI00546116
RefSeq:NP_175375.2 UniGene:At.49961 ProteinModelPortal:Q501B9
SMR:Q501B9 PRIDE:Q501B9 EnsemblPlants:AT1G49520.1 GeneID:841376
KEGG:ath:AT1G49520 TAIR:At1g49520 InParanoid:Q501B9 OMA:RTIICDE
PhylomeDB:Q501B9 ProtClustDB:CLSN2684550 Genevestigator:Q501B9
Uniprot:Q501B9
Length = 372
Score = 179 (68.1 bits), Expect = 3.1e-13, P = 3.1e-13
Identities = 31/69 (44%), Positives = 50/69 (72%)
Query: 41 VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
+S QL KFLG ++ +R++ VKK+W YIR+HDLQ+P N+R I CD+ L ++F K ++
Sbjct: 108 LSPQLEKFLGTSQLARTEVVKKMWAYIREHDLQDPTNRRNILCDESLHSLFRVK-TINMF 166
Query: 101 EIAKLLSQH 109
++ K L++H
Sbjct: 167 QMNKALAKH 175
Score = 142 (55.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 24/69 (34%), Positives = 49/69 (71%)
Query: 41 VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
+S +L F G + +R++ VK +W+YI++++LQ+P++KR I CD+ L+++F +S+
Sbjct: 257 LSPELQAFTGTPQLARTEVVKMLWKYIKENNLQDPSDKRTIICDESLRSLFP-VESINMF 315
Query: 101 EIAKLLSQH 109
++ K L++H
Sbjct: 316 QMNKQLAKH 324
>POMBASE|SPCC285.17 [details] [associations]
symbol:spp27 "RNA polymerase I upstream activation factor
complex subunit Spp27" species:4896 "Schizosaccharomyces pombe"
[GO:0000500 "RNA polymerase I upstream activating factor complex"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045943 "positive
regulation of transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0001168 "RNA polymerase I upstream control
element sequence-specific DNA binding transcription factor
activity" evidence=TAS] InterPro:IPR003121 InterPro:IPR009057
Pfam:PF02201 PomBase:SPCC285.17 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF47592 GO:GO:0045943 InterPro:IPR014876
Pfam:PF08766 GO:GO:0000500 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 HSSP:Q61466 KO:K15223 OMA:DRREILC OrthoDB:EOG486CP2
PIR:T41263 RefSeq:NP_588345.1 ProteinModelPortal:O74503
STRING:O74503 PRIDE:O74503 EnsemblFungi:SPCC285.17.1 GeneID:2539310
KEGG:spo:SPCC285.17 NextBio:20800476 Uniprot:O74503
Length = 233
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 33/75 (44%), Positives = 50/75 (66%)
Query: 38 PVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSV 97
P+ +S +L++FLG + SR VKK+W+YI+ HDLQ+P +KR I CDDKLK++F D++
Sbjct: 120 PMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE-VDTL 178
Query: 98 GFLEIAKLLSQHFVK 112
+ K L+ K
Sbjct: 179 HMFTMNKYLTNLMTK 193
>ASPGD|ASPL0000053508 [details] [associations]
symbol:AN0360 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR003121
InterPro:IPR009057 Pfam:PF02201 EMBL:BN001308 GO:GO:0003677
Gene3D:1.10.10.60 EMBL:AACD01000006 SUPFAM:SSF47592
InterPro:IPR014876 Pfam:PF08766 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 KO:K15223 OrthoDB:EOG486CP2 RefSeq:XP_657964.1
ProteinModelPortal:Q5BGH0 EnsemblFungi:CADANIAT00002344
GeneID:2876138 KEGG:ani:AN0360.2 HOGENOM:HOG000213060 OMA:FRTFGML
Uniprot:Q5BGH0
Length = 279
Score = 170 (64.9 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 32/73 (43%), Positives = 50/73 (68%)
Query: 38 PVPVSAQLSKFLG-ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDS 96
P+ +S LS LG A SR VKK+W+YI +HDLQ+P+++R+IRCDD ++ +F +D
Sbjct: 202 PLNLSPALSALLGGAATLSRPQTVKKLWEYIHEHDLQDPSDRRQIRCDDPMRAVFK-QDR 260
Query: 97 VGFLEIAKLLSQH 109
+ + K+LSQ+
Sbjct: 261 IHMFTMTKILSQN 273
>SGD|S000005821 [details] [associations]
symbol:UAF30 "Subunit of UAF (upstream activation factor)"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0001168
"RNA polymerase I upstream control element sequence-specific DNA
binding transcription factor activity" evidence=IMP] [GO:0001165
"RNA polymerase I upstream control element sequence-specific DNA
binding" evidence=IDA] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0000500 "RNA
polymerase I upstream activating factor complex" evidence=IDA]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 SGD:S000005821
EMBL:BK006948 GO:GO:0006355 Gene3D:1.10.10.60 GO:GO:0006325
SUPFAM:SSF47592 InterPro:IPR014876 Pfam:PF08766 GO:GO:0042790
GO:GO:0000500 GO:GO:0001165 eggNOG:COG5531 InterPro:IPR019835
SMART:SM00151 RefSeq:NP_014940.4 GeneID:854472 KEGG:sce:YOR297C
GeneTree:ENSGT00390000006048 HOGENOM:HOG000000765 KO:K15223
OrthoDB:EOG486CP2 EMBL:Z75203 PIR:S67199 RefSeq:NP_014938.3
ProteinModelPortal:Q08747 SMR:Q08747 IntAct:Q08747 STRING:Q08747
EnsemblFungi:YOR295W GeneID:854470 KEGG:sce:YOR295W CYGD:YOR295w
OMA:EDNENDT NextBio:976765 Genevestigator:Q08747 GermOnline:YOR295W
Uniprot:Q08747
Length = 228
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 32/74 (43%), Positives = 50/74 (67%)
Query: 39 VPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVG 98
V +S L+ LG +E +R++ V+++W YI+ H+LQNP NK+EI CD+KL+ I GK S
Sbjct: 124 VTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELIL-GK-STN 181
Query: 99 FLEIAKLLSQHFVK 112
E+ K+L+ H +
Sbjct: 182 MFEMHKILASHMTE 195
>TAIR|locus:2116302 [details] [associations]
symbol:AT4G26810 "AT4G26810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002687
GenomeReviews:CT486007_GR EMBL:AL035440 EMBL:AL161565
SUPFAM:SSF47592 HOGENOM:HOG000225318 EMBL:BT010795 EMBL:BT011270
IPI:IPI00527090 PIR:T04804 RefSeq:NP_001119064.1 RefSeq:NP_194411.1
UniGene:At.32149 ProteinModelPortal:Q9SZ21 SMR:Q9SZ21 IntAct:Q9SZ21
PRIDE:Q9SZ21 DNASU:828788 EnsemblPlants:AT4G26810.1
EnsemblPlants:AT4G26810.2 GeneID:828788 KEGG:ath:AT4G26810
TAIR:At4g26810 eggNOG:NOG291903 InParanoid:Q9SZ21 OMA:MSHISFF
PhylomeDB:Q9SZ21 ProtClustDB:CLSN2686051 ArrayExpress:Q9SZ21
Genevestigator:Q9SZ21 Uniprot:Q9SZ21
Length = 106
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 39 VPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVG 98
V + + L F+G ++ SR ++W YI+ ++LQ+P NK + CD+KLK+I GK V
Sbjct: 24 VNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNVVICDEKLKSILLGKQRVE 83
Query: 99 FLEIAKLLSQHFVK 112
+++ L+ HF K
Sbjct: 84 LVDLPSLIKLHFPK 97
>TAIR|locus:2132055 [details] [associations]
symbol:AT4G22360 "AT4G22360" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201
EMBL:CP002687 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF47592
InterPro:IPR014876 Pfam:PF08766 InterPro:IPR019835 SMART:SM00151
KO:K15223 UniGene:At.21353 UniGene:At.70102 EMBL:AY059797
EMBL:AY091266 IPI:IPI00522192 RefSeq:NP_567661.1
ProteinModelPortal:Q93YR5 SMR:Q93YR5 PRIDE:Q93YR5
EnsemblPlants:AT4G22360.1 GeneID:828331 KEGG:ath:AT4G22360
InParanoid:Q93YR5 OMA:IRDQINI ProtClustDB:CLSN2723299
Genevestigator:Q93YR5 Uniprot:Q93YR5
Length = 385
Score = 145 (56.1 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 27/71 (38%), Positives = 47/71 (66%)
Query: 41 VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
VS +L +G R++ V+++W YIR+++LQ+P+NKR+I CDD L+ +F D
Sbjct: 203 VSPELEVVVGEPALPRTEIVRQLWAYIRKNNLQDPSNKRKIICDDALRVVFE-TDCTDMF 261
Query: 101 EIAKLLSQHFV 111
++ KLL++H +
Sbjct: 262 KMNKLLAKHIL 272
Score = 135 (52.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 25/78 (32%), Positives = 48/78 (61%)
Query: 39 VPVSAQLSKFLGANEASRSDA--VKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDS 96
V +S L KF G E +D ++++W+YI+ ++L++P N I+CD+KL+ + G +S
Sbjct: 309 VTLSEPLGKFFGTGETEMADEEIIRRVWEYIKLNNLEDPVNPMAIQCDEKLRDLL-GCES 367
Query: 97 VGFLEIAKLLSQHFVKSA 114
+ + I ++L +H K +
Sbjct: 368 ISAVGINEMLRRHMYKQS 385
>UNIPROTKB|G4MMD0 [details] [associations]
symbol:MGG_01988 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 GO:GO:0003677
Gene3D:1.10.10.60 EMBL:CM001231 SUPFAM:SSF47592 InterPro:IPR014876
Pfam:PF08766 InterPro:IPR019835 SMART:SM00151 KO:K15223
RefSeq:XP_003708728.1 ProteinModelPortal:G4MMD0
EnsemblFungi:MGG_01988T0 GeneID:2681107 KEGG:mgr:MGG_01988
Uniprot:G4MMD0
Length = 285
Score = 141 (54.7 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 26/72 (36%), Positives = 46/72 (63%)
Query: 38 PVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSV 97
P +SA L++ G SR VKK+W++I+ ++LQ+P +KR+I CD+K++ +F + S+
Sbjct: 208 PFHLSASLAEVCGEPTLSRPQVVKKLWEHIKGNNLQDPNDKRQILCDEKMQAVFK-QSSL 266
Query: 98 GFLEIAKLLSQH 109
+ KL+ H
Sbjct: 267 NMFAMNKLIGSH 278
>ASPGD|ASPL0000017588 [details] [associations]
symbol:AN10524 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0016586 "RSC
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR003121 Pfam:PF02201
EMBL:BN001302 SUPFAM:SSF47592 EnsemblFungi:CADANIAT00004436
OMA:TDKNIPD Uniprot:C8V4A6
Length = 472
Score = 133 (51.9 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 41 VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
+S +L++ L E +RS V IW YIR LQ KR +RCDD+L+ IF G+D + F
Sbjct: 250 LSKELAEVLDVEEETRSGIVLGIWDYIRAMGLQEDEEKRLVRCDDRLRAIF-GRDQMFFP 308
Query: 101 EIAKLLSQH 109
+I + + H
Sbjct: 309 QIPESIGPH 317
>POMBASE|SPAC23G3.10c [details] [associations]
symbol:ssr3 "SWI/SNF and RSC complex subunit Ssr3"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IC]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0016586 "RSC
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
PomBase:SPAC23G3.10c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006357 GO:GO:0006338 GO:GO:0000790
GO:GO:0016514 GO:GO:0016586 GO:GO:0000991 SUPFAM:SSF47592
eggNOG:COG5531 OrthoDB:EOG4N8VDJ KO:K11650 OMA:PLKSQMS PIR:T50184
RefSeq:NP_593110.1 HSSP:Q61466 ProteinModelPortal:Q9P7S3
DIP:DIP-48385N STRING:Q9P7S3 EnsemblFungi:SPAC23G3.10c.1
GeneID:2541438 KEGG:spo:SPAC23G3.10c NextBio:20802540
Uniprot:Q9P7S3
Length = 425
Score = 117 (46.2 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 41 VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
+S + LG E +R D V +WQYI+ H LQ+ KR I CD L+ +F D + F
Sbjct: 208 LSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEA-DRLYFP 266
Query: 101 EIAKLLSQ 108
I +L+++
Sbjct: 267 RIPELMNR 274
>WB|WBGene00020779 [details] [associations]
symbol:T24G10.2 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=ISS] [GO:0008134 "transcription factor binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR003121 Pfam:PF02201 GO:GO:0005634 GO:GO:0009792
GO:GO:0006351 GO:GO:0008134 SUPFAM:SSF47592 InterPro:IPR014876
Pfam:PF08766 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
KO:K15223 EMBL:FO081422 PIR:T16937 RefSeq:NP_498159.2
ProteinModelPortal:Q22749 SMR:Q22749 STRING:Q22749 PaxDb:Q22749
EnsemblMetazoa:T24G10.2 GeneID:175747 KEGG:cel:CELE_T24G10.2
UCSC:T24G10.2 CTD:175747 WormBase:T24G10.2
GeneTree:ENSGT00520000059577 HOGENOM:HOG000017704 InParanoid:Q22749
OMA:TKLCYIS NextBio:889470 Uniprot:Q22749
Length = 347
Score = 114 (45.2 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 41 VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
+S +L + R D VK +W YI++++L++P N + I CD L++IF GF
Sbjct: 202 ISTELQQVTKDQWMKRCDVVKALWDYIKENNLKDPKNGQYIICDSTLESIFKKNRLKGF- 260
Query: 101 EIAKLLSQHFV 111
+ K L++H +
Sbjct: 261 GMVKFLTRHII 271
>FB|FBgn0035370 [details] [associations]
symbol:CG1240 species:7227 "Drosophila melanogaster"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003121 InterPro:IPR009057 Pfam:PF02201 EMBL:AE014296
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF47592 InterPro:IPR014876
Pfam:PF08766 KO:K15223 OMA:FRTFGML GeneTree:ENSGT00520000059577
EMBL:AY061488 RefSeq:NP_647745.1 UniGene:Dm.3583 SMR:Q9VZY0
MINT:MINT-927607 STRING:Q9VZY0 EnsemblMetazoa:FBtr0072969
GeneID:38341 KEGG:dme:Dmel_CG1240 UCSC:CG1240-RA
FlyBase:FBgn0035370 eggNOG:NOG264204 InParanoid:Q9VZY0
OrthoDB:EOG4M907W ChiTaRS:CG1240 GenomeRNAi:38341 NextBio:808111
Uniprot:Q9VZY0
Length = 244
Score = 111 (44.1 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 41 VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
+S +LS +G + R + VKK+W I++ DL +P NK+ CDD+L + + F
Sbjct: 174 LSPELSALMGESSLPRHEVVKKVWAIIKERDLYDPKNKQFAICDDELMKVMKIRRFRTF- 232
Query: 101 EIAKLLSQHFV 111
+ K L HF+
Sbjct: 233 GMLKHLKPHFL 243
>TAIR|locus:2060949 [details] [associations]
symbol:AT2G18090 "AT2G18090" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001965 InterPro:IPR003121
InterPro:IPR003169 InterPro:IPR019787 Pfam:PF02201 Pfam:PF02213
PROSITE:PS50016 PROSITE:PS50829 SMART:SM00249 SMART:SM00444
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 SUPFAM:SSF55277
SUPFAM:SSF47592 HSSP:Q14839 EMBL:AF370586 IPI:IPI00535357
RefSeq:NP_849971.1 UniGene:At.13556 ProteinModelPortal:Q94JX1
SMR:Q94JX1 PaxDb:Q94JX1 PRIDE:Q94JX1 EnsemblPlants:AT2G18090.1
GeneID:816321 KEGG:ath:AT2G18090 TAIR:At2g18090 eggNOG:NOG281195
HOGENOM:HOG000151186 OMA:TATIAND PhylomeDB:Q94JX1
ProtClustDB:CLSN2690760 Genevestigator:Q94JX1 Uniprot:Q94JX1
Length = 824
Score = 118 (46.6 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 24/57 (42%), Positives = 35/57 (61%)
Query: 55 SRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFV 111
S+ D + +Y+R+++LQN EI CD KL +F GK+ V LE+ KLL HF+
Sbjct: 316 SKYDVQTLVLEYVRRNNLQNSPQNSEIMCDSKLMRLF-GKERVDNLEMLKLLDSHFI 371
>WB|WBGene00015971 [details] [associations]
symbol:swsn-2.2 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0070603 "SWI/SNF superfamily-type
complex" evidence=ISS] [GO:0001085 "RNA polymerase II transcription
factor binding" evidence=ISS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR003121 Pfam:PF02201 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0006357 GO:GO:0040035 GO:GO:0001085
SUPFAM:SSF47592 EMBL:FO080611 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 OMA:TDKNIPD PIR:T15185
RefSeq:NP_491329.2 ProteinModelPortal:O02101 SMR:O02101
MINT:MINT-6668665 STRING:O02101 PaxDb:O02101
EnsemblMetazoa:C18E3.2.1 EnsemblMetazoa:C18E3.2.2
EnsemblMetazoa:C18E3.2.3 GeneID:172018 KEGG:cel:CELE_C18E3.2
UCSC:C18E3.2.2 CTD:172018 WormBase:C18E3.2 InParanoid:O02101
NextBio:873681 GO:GO:0070603 Uniprot:O02101
Length = 449
Score = 109 (43.4 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIA 103
+L+K LG +R ++ +WQYI+ H LQ+P + I CD L F G + + F+E+
Sbjct: 233 RLAKVLGIATETRPKIIEALWQYIKTHGLQDPQERDIINCDTFLSQCF-GVNRMRFMEVP 291
Query: 104 KLLSQ 108
L Q
Sbjct: 292 NKLHQ 296
>MGI|MGI:1933623 [details] [associations]
symbol:Smarcd1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 1"
species:10090 "Mus musculus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006337
"nucleosome disassembly" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=ISO]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0032947
"protein complex scaffold" evidence=ISO] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=IDA] [GO:0071565 "nBAF
complex" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
MGI:MGI:1933623 GO:GO:0007399 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0048096 GO:GO:0006337 SUPFAM:SSF47592
eggNOG:COG5531 GeneTree:ENSGT00390000017809 CTD:6602
HOGENOM:HOG000240746 KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835
SMART:SM00151 HOVERGEN:HBG054046 OMA:NTFYPSK ChiTaRS:SMARCD1
EMBL:M25773 EMBL:U66620 EMBL:BC026783 EMBL:BC059921 EMBL:AK075611
IPI:IPI00121270 IPI:IPI00223126 PIR:A30222 RefSeq:NP_114030.2
UniGene:Mm.273756 PDB:1UHR PDBsum:1UHR ProteinModelPortal:Q61466
SMR:Q61466 IntAct:Q61466 STRING:Q61466 PhosphoSite:Q61466
PaxDb:Q61466 PRIDE:Q61466 Ensembl:ENSMUST00000023759 GeneID:83797
KEGG:mmu:83797 UCSC:uc007xqb.1 InParanoid:Q61466
EvolutionaryTrace:Q61466 NextBio:350782 Bgee:Q61466
Genevestigator:Q61466 GermOnline:ENSMUSG00000023018 Uniprot:Q61466
Length = 515
Score = 103 (41.3 bits), Expect = 0.00010, P = 0.00010
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIA 103
+L++ LG + +R ++ +WQYI+ H LQ+P + + CD L+ IF + + F EI
Sbjct: 300 RLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQ-RMKFSEIP 358
Query: 104 KLL 106
+ L
Sbjct: 359 QRL 361
>UNIPROTKB|H9KZE0 [details] [associations]
symbol:SMARCD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0032947 "protein
complex scaffold" evidence=IEA] [GO:0048096 "chromatin-mediated
maintenance of transcription" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR003121 Pfam:PF02201 SUPFAM:SSF47592
GeneTree:ENSGT00390000017809 InterPro:IPR019835 SMART:SM00151
OMA:NTFYPSK EMBL:AADN02072424 Ensembl:ENSGALT00000010024
Uniprot:H9KZE0
Length = 516
Score = 103 (41.3 bits), Expect = 0.00010, P = 0.00010
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIA 103
+L++ LG + +R ++ +WQYI+ H LQ+P + + CD L+ IF + + F EI
Sbjct: 301 RLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREYVICDKYLQQIFESQ-RMKFSEIP 359
Query: 104 KLL 106
+ L
Sbjct: 360 QRL 362
>UNIPROTKB|F1MTG9 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=IEA]
[GO:0032947 "protein complex scaffold" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0006337 "nucleosome
disassembly" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0048096
GO:GO:0006337 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809
IPI:IPI00723099 UniGene:Bt.87407 InterPro:IPR019835 SMART:SM00151
OMA:NTFYPSK EMBL:DAAA02012932 Ensembl:ENSBTAT00000001284
Uniprot:F1MTG9
Length = 515
Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIA 103
+L++ LG + +R ++ +WQYI+ H LQ+P + + CD L+ IF + + F EI
Sbjct: 300 RLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQ-RMKFSEIP 358
Query: 104 KLL 106
+ L
Sbjct: 359 QRL 361
>UNIPROTKB|Q2TBN1 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9913 "Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS]
[GO:0071564 "npBAF complex" evidence=ISS] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0007399 "nervous system
development" evidence=IEA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0007399 GO:GO:0016568 GO:GO:0071564 GO:GO:0071565
SUPFAM:SSF47592 eggNOG:COG5531 EMBL:BC109890 IPI:IPI00723099
RefSeq:NP_001033648.1 UniGene:Bt.87407 ProteinModelPortal:Q2TBN1
SMR:Q2TBN1 STRING:Q2TBN1 PRIDE:Q2TBN1 GeneID:533232 KEGG:bta:533232
CTD:6602 HOGENOM:HOG000240746 InParanoid:Q2TBN1 KO:K11650
OrthoDB:EOG4DNF48 NextBio:20875968 InterPro:IPR019835 SMART:SM00151
Uniprot:Q2TBN1
Length = 515
Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIA 103
+L++ LG + +R ++ +WQYI+ H LQ+P + + CD L+ IF + + F EI
Sbjct: 300 RLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQ-RMKFSEIP 358
Query: 104 KLL 106
+ L
Sbjct: 359 QRL 361
>UNIPROTKB|Q96GM5 [details] [associations]
symbol:SMARCD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily D member 1"
species:9606 "Homo sapiens" [GO:0007399 "nervous system
development" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0032947 "protein complex scaffold" evidence=IDA]
[GO:0048096 "chromatin-mediated maintenance of transcription"
evidence=IMP] [GO:0006338 "chromatin remodeling" evidence=IDA;IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF
complex" evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS]
[GO:0003713 "transcription coactivator activity" evidence=NAS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=NAS] [GO:0006337 "nucleosome disassembly"
evidence=IDA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0007399
GO:GO:0006357 GO:GO:0003713 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0032947 EMBL:AC025154 GO:GO:0048096
GO:GO:0006337 SUPFAM:SSF47592 eggNOG:COG5531 CTD:6602
HOGENOM:HOG000240746 KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835
SMART:SM00151 EMBL:AF109733 EMBL:U66617 EMBL:BC009368
IPI:IPI00852816 IPI:IPI00853408 RefSeq:NP_003067.3
RefSeq:NP_620710.2 UniGene:Hs.79335 ProteinModelPortal:Q96GM5
SMR:Q96GM5 DIP:DIP-33390N IntAct:Q96GM5 MINT:MINT-1144212
STRING:Q96GM5 PhosphoSite:Q96GM5 DMDM:238054318 PaxDb:Q96GM5
PRIDE:Q96GM5 DNASU:6602 Ensembl:ENST00000381513
Ensembl:ENST00000394963 GeneID:6602 KEGG:hsa:6602 UCSC:uc001rvx.4
UCSC:uc001rvy.4 GeneCards:GC12P050478 HGNC:HGNC:11106 HPA:HPA004101
MIM:601735 neXtProt:NX_Q96GM5 PharmGKB:PA35956 HOVERGEN:HBG054046
InParanoid:Q96GM5 OMA:NTFYPSK ChiTaRS:SMARCD1 GenomeRNAi:6602
NextBio:25683 ArrayExpress:Q96GM5 Bgee:Q96GM5 CleanEx:HS_SMARCD1
Genevestigator:Q96GM5 Uniprot:Q96GM5
Length = 515
Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIA 103
+L++ LG + +R ++ +WQYI+ H LQ+P + + CD L+ IF + + F EI
Sbjct: 300 RLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQ-RMKFSEIP 358
Query: 104 KLL 106
+ L
Sbjct: 359 QRL 361
>RGD|1305406 [details] [associations]
symbol:Smarcd1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily d, member 1"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006337 "nucleosome disassembly" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0016514 "SWI/SNF complex"
evidence=IEA;ISO] [GO:0032947 "protein complex scaffold"
evidence=IEA;ISO] [GO:0048096 "chromatin-mediated maintenance of
transcription" evidence=IEA;ISO] [GO:0071564 "npBAF complex"
evidence=IEA;ISO] [GO:0071565 "nBAF complex" evidence=IEA;ISO]
InterPro:IPR003121 Pfam:PF02201 RGD:1305406 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0048096 GO:GO:0006337
EMBL:CH474035 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809 CTD:6602
KO:K11650 OrthoDB:EOG4DNF48 InterPro:IPR019835 SMART:SM00151
IPI:IPI00366479 RefSeq:NP_001102222.1 UniGene:Rn.21196
Ensembl:ENSRNOT00000043163 GeneID:363002 KEGG:rno:363002
UCSC:RGD:1305406 NextBio:682087 Uniprot:D3ZBS9
Length = 515
Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIA 103
+L++ LG + +R ++ +WQYI+ H LQ+P + + CD L+ IF + + F EI
Sbjct: 300 RLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQ-RMKFSEIP 358
Query: 104 KLL 106
+ L
Sbjct: 359 QRL 361
>TAIR|locus:2827287 [details] [associations]
symbol:NERD "Needed for RDR2-independent DNA methylation"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0042393
"histone binding" evidence=IDA] InterPro:IPR000571
InterPro:IPR001965 InterPro:IPR003121 InterPro:IPR003169
InterPro:IPR004343 InterPro:IPR018144 InterPro:IPR019787
Pfam:PF00642 Pfam:PF02201 Pfam:PF02213 Pfam:PF03126 PROSITE:PS50016
PROSITE:PS50103 PROSITE:PS50829 PROSITE:PS51360 SMART:SM00249
SMART:SM00444 SMART:SM00719 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006352 GO:GO:0016570 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 eggNOG:NOG12793
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0031047 GO:GO:0042393
SUPFAM:SSF55277 EMBL:AC007047 EMBL:DQ446507 IPI:IPI00546025
PIR:F84540 PIR:G84540 RefSeq:NP_179241.4 UniGene:At.40269
HSSP:Q9FT92 PaxDb:Q9SIV5 PRIDE:Q9SIV5 GeneID:816147
KEGG:ath:AT2G16485 TAIR:At2g16485 HOGENOM:HOG000215989
InParanoid:Q9SIV5 ArrayExpress:Q9SIV5 Genevestigator:Q9SIV5
GO:GO:0032776 GO:GO:0010964 SUPFAM:SSF47592 Uniprot:Q9SIV5
Length = 1773
Score = 108 (43.1 bits), Expect = 0.00013, P = 0.00013
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 66 YIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVK 112
YI++++L++P K ++ CD +L+ +F GK VG E+ LL HF+K
Sbjct: 839 YIKRYNLRDPRRKSQVICDSRLQNLF-GKSHVGHFEMLNLLDSHFLK 884
>FB|FBgn0025463 [details] [associations]
symbol:Bap60 "Brahma associated protein 60kD" species:7227
"Drosophila melanogaster" [GO:0003713 "transcription coactivator
activity" evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0035060 "brahma complex" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0010628 "positive
regulation of gene expression" evidence=IGI] [GO:0001085 "RNA
polymerase II transcription factor binding" evidence=IPI]
[GO:0031453 "positive regulation of heterochromatin assembly"
evidence=IMP] [GO:0008134 "transcription factor binding"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IDA] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0048666 "neuron
development" evidence=IMP] [GO:0007517 "muscle organ development"
evidence=IMP] InterPro:IPR003121 Pfam:PF02201 GO:GO:0045893
GO:GO:0003677 GO:GO:0048813 GO:GO:0007517 GO:GO:0035060
SUPFAM:SSF47592 eggNOG:COG5531 InterPro:IPR019835 SMART:SM00151
EMBL:AF071503 ProteinModelPortal:O76490 SMR:O76490 IntAct:O76490
STRING:O76490 PaxDb:O76490 PRIDE:O76490 FlyBase:FBgn0025463
InParanoid:O76490 OrthoDB:EOG4HDR8S ArrayExpress:O76490 Bgee:O76490
GO:GO:0031453 Uniprot:O76490
Length = 515
Score = 100 (40.3 bits), Expect = 0.00021, P = 0.00021
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKRE-IRCDDKLKTIFNGKDSVGFLEI 102
+L++ LG + +R + +WQYI+ H LQ+ A++RE I CD L+ IF+ + + F EI
Sbjct: 301 RLARLLGVHTQTRPVIISALWQYIKTHKLQD-AHEREYINCDKYLEQIFSCQ-RMKFAEI 358
Query: 103 AKLLS 107
+ L+
Sbjct: 359 PQRLN 363
>WB|WBGene00044072 [details] [associations]
symbol:ham-3 species:6239 "Caenorhabditis elegans"
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0010171 "body morphogenesis" evidence=IMP] [GO:0007413 "axonal
fasciculation" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0070603 "SWI/SNF superfamily-type complex"
evidence=ISS] [GO:0001085 "RNA polymerase II transcription factor
binding" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR003121 Pfam:PF02201
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0010171 GO:GO:0040011
GO:GO:0006357 GO:GO:0040035 GO:GO:0007413 GO:GO:0001085
SUPFAM:SSF47592 EMBL:Z47357 eggNOG:COG5531
GeneTree:ENSGT00390000017809 HOGENOM:HOG000240746 KO:K11650
InterPro:IPR019835 SMART:SM00151 OMA:MRFMEIP GO:GO:0070603
PIR:T27696 RefSeq:NP_499250.1 ProteinModelPortal:Q09646 SMR:Q09646
STRING:Q09646 PaxDb:Q09646 EnsemblMetazoa:ZK1128.5 GeneID:176426
KEGG:cel:CELE_ZK1128.5 UCSC:ZK1128.5 CTD:176426 WormBase:ZK1128.5
InParanoid:Q09646 NextBio:892530 Uniprot:Q09646
Length = 446
Score = 99 (39.9 bits), Expect = 0.00022, P = 0.00022
Identities = 23/65 (35%), Positives = 37/65 (56%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIA 103
+L+K LG +R ++ +WQYI+ H LQ+P ++ I D L+ F G + F+EI
Sbjct: 230 RLAKVLGIAAETRPRIIEALWQYIKTHKLQDPQDRDTINNDLFLEQCF-GVSKMRFMEIP 288
Query: 104 KLLSQ 108
+ L Q
Sbjct: 289 QRLHQ 293
>TAIR|locus:2078713 [details] [associations]
symbol:AT3G01890 "AT3G01890" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003121 Pfam:PF02201 EMBL:CP002686
GenomeReviews:BA000014_GR SUPFAM:SSF47592 eggNOG:COG5531
HOGENOM:HOG000240746 KO:K11650 ProtClustDB:CLSN2687209
EMBL:BT026139 IPI:IPI00520994 RefSeq:NP_566154.2 UniGene:At.45849
ProteinModelPortal:Q147F4 SMR:Q147F4 EnsemblPlants:AT3G01890.1
GeneID:820093 KEGG:ath:AT3G01890 TAIR:At3g01890 InParanoid:Q147F4
OMA:PAISACY PhylomeDB:Q147F4 Genevestigator:Q147F4 Uniprot:Q147F4
Length = 458
Score = 99 (39.9 bits), Expect = 0.00023, P = 0.00023
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 42 SAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLE 101
S L + LG +R + IW Y++ LQNP + CD L ++F G++ + F
Sbjct: 253 SPALMQVLGIEVDTRPRIIAAIWHYVKVRKLQNPNDPSFFNCDAALHSVF-GEEKMKFTM 311
Query: 102 IAKLLSQH 109
++ +SQH
Sbjct: 312 LSHKISQH 319
>TAIR|locus:2174638 [details] [associations]
symbol:CHC1 "AT5G14170" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0048364 "root development"
evidence=IMP] [GO:0006281 "DNA repair" evidence=IMP] [GO:0010224
"response to UV-B" evidence=IEP] [GO:0000956 "nuclear-transcribed
mRNA catabolic process" evidence=RCA] [GO:0008284 "positive
regulation of cell proliferation" evidence=RCA] InterPro:IPR003121
Pfam:PF02201 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
EMBL:AB007650 GO:GO:0048364 GO:GO:0010224 SUPFAM:SSF47592
eggNOG:COG5531 HOGENOM:HOG000240746 KO:K11650 OMA:NTFYPSK
EMBL:BT008892 EMBL:AY065106 IPI:IPI00539458 RefSeq:NP_196921.1
UniGene:At.6512 PDB:1V31 PDBsum:1V31 ProteinModelPortal:Q9FMT4
SMR:Q9FMT4 IntAct:Q9FMT4 STRING:Q9FMT4 PaxDb:Q9FMT4 PRIDE:Q9FMT4
EnsemblPlants:AT5G14170.1 GeneID:831267 KEGG:ath:AT5G14170
TAIR:At5g14170 InParanoid:Q9FMT4 PhylomeDB:Q9FMT4
ProtClustDB:CLSN2687209 EvolutionaryTrace:Q9FMT4
Genevestigator:Q9FMT4 GermOnline:AT5G14170 Uniprot:Q9FMT4
Length = 534
Score = 99 (39.9 bits), Expect = 0.00029, P = 0.00029
Identities = 20/69 (28%), Positives = 35/69 (50%)
Query: 41 VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
+S L LG +R + IW Y++ LQNP + CD L+ +F G++ + F
Sbjct: 321 LSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF-GEEKLKFT 379
Query: 101 EIAKLLSQH 109
+++ +S H
Sbjct: 380 MVSQKISHH 388
>ZFIN|ZDB-GENE-080509-2 [details] [associations]
symbol:smarcd3b "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily d, member 3b"
species:7955 "Danio rerio" [GO:0007368 "determination of left/right
symmetry" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IGI] [GO:0055007 "cardiac muscle cell differentiation"
evidence=IGI] InterPro:IPR003121 Pfam:PF02201
ZFIN:ZDB-GENE-080509-2 GO:GO:0003007 GO:GO:0055007 GO:GO:0007368
SUPFAM:SSF47592 eggNOG:COG5531 GeneTree:ENSGT00390000017809
HOGENOM:HOG000240746 KO:K11650 InterPro:IPR019835 SMART:SM00151
HOVERGEN:HBG054046 OrthoDB:EOG4QFWD6 OMA:PAISACY EMBL:BX005319
EMBL:BX322787 EMBL:EF552706 IPI:IPI00501254 RefSeq:NP_001120778.1
UniGene:Dr.28422 STRING:B2KL77 Ensembl:ENSDART00000006724
GeneID:562140 KEGG:dre:562140 CTD:562140 NextBio:20884266
Uniprot:B2KL77
Length = 476
Score = 96 (38.9 bits), Expect = 0.00051, P = 0.00051
Identities = 20/64 (31%), Positives = 38/64 (59%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIA 103
+L++ LG + +RS ++ +WQY++ + LQ+ +K I CD + IF+ + F EI
Sbjct: 261 RLARLLGIHTQTRSSIIQALWQYVKTNKLQDSHDKEYINCDKYFQQIFDCP-RLKFSEIP 319
Query: 104 KLLS 107
+ L+
Sbjct: 320 QRLT 323
>UNIPROTKB|F1NJN5 [details] [associations]
symbol:SMARCD3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006337 "nucleosome disassembly" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0016922
"ligand-dependent nuclear receptor binding" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0035257 "nuclear hormone
receptor binding" evidence=IEA] [GO:0042692 "muscle cell
differentiation" evidence=IEA] [GO:0043393 "regulation of protein
binding" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
[GO:0000790 "nuclear chromatin" evidence=IEA] [GO:0002052 "positive
regulation of neuroblast proliferation" evidence=IEA] [GO:0003139
"secondary heart field specification" evidence=IEA] [GO:0003219
"cardiac right ventricle formation" evidence=IEA] [GO:0003407
"neural retina development" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR003121 Pfam:PF02201 GO:GO:0005737
GO:GO:0045893 GO:GO:0043393 GO:GO:0006351 GO:GO:0006338
GO:GO:0000790 GO:GO:0071564 GO:GO:0071565 GO:GO:0006337
GO:GO:0030374 SUPFAM:SSF47592 GeneTree:ENSGT00390000017809
InterPro:IPR019835 SMART:SM00151 OMA:PLKSQMS EMBL:AADN02078761
EMBL:AADN02078762 EMBL:AADN02078763 EMBL:AADN02078764
EMBL:AADN02078765 EMBL:AADN02078766 IPI:IPI00583326
Ensembl:ENSGALT00000021298 Uniprot:F1NJN5
Length = 462
Score = 95 (38.5 bits), Expect = 0.00063, P = 0.00063
Identities = 21/64 (32%), Positives = 38/64 (59%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIA 103
+L++ LG + +RS ++ +WQYI+ + LQ+ +K I CD + IF+ + F EI
Sbjct: 247 RLARLLGIHTQTRSAIIQALWQYIKTNKLQDSHDKEYINCDKYFQQIFDCP-RLKFSEIP 305
Query: 104 KLLS 107
+ L+
Sbjct: 306 QRLT 309
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.134 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 114 90 0.00091 102 3 11 22 0.44 29
29 0.39 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 33
No. of states in DFA: 560 (60 KB)
Total size of DFA: 106 KB (2072 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.47u 0.14s 9.61t Elapsed: 00:00:01
Total cpu time: 9.47u 0.14s 9.61t Elapsed: 00:00:01
Start: Sat May 11 07:25:41 2013 End: Sat May 11 07:25:42 2013