BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048564
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TRI1 PE=1 SV=1
Length = 226
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 39 VPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVG 98
V +SA L KFLG+ E R+ VK IWQYI++HDLQNP ++REI CD+K++ IF GK
Sbjct: 124 VLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF-GKKMTM 182
Query: 99 FLEIAKLLSQHF 110
F + KLL++H
Sbjct: 183 F-SMNKLLTKHL 193
>sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1
Length = 233
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 31 AKGGIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTI 90
A + KP+ +S +L++FLG + SR VKK+W+YI+ HDLQ+P +KR I CDDKLK++
Sbjct: 113 ANNPLNKPMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSV 172
Query: 91 FNGKDSVGFLEIAKLLSQHFVK 112
F D++ + K L+ K
Sbjct: 173 FEV-DTLHMFTMNKYLTNLMTK 193
>sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1
SV=1
Length = 228
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 60/101 (59%), Gaps = 8/101 (7%)
Query: 18 KSGAEATAAAGKKAKGGIGKP------VPVSAQLSKFLGANEASRSDAVKKIWQYIRQHD 71
K+ +E +K KG + K V +S L+ LG +E +R++ V+++W YI+ H+
Sbjct: 97 KNDSETKGTHVEKKKGTVSKSPISTRKVTLSKSLASLLGEHELTRTEVVRRLWAYIKAHN 156
Query: 72 LQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVK 112
LQNP NK+EI CD+KL+ I GK S E+ K+L+ H +
Sbjct: 157 LQNPNNKKEILCDEKLELIL-GK-STNMFEMHKILASHMTE 195
>sp|Q9P7S3|SSR3_SCHPO SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr3 PE=1 SV=1
Length = 425
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 41 VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
+S + LG E +R D V +WQYI+ H LQ+ KR I CD L+ +F D + F
Sbjct: 208 LSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEA-DRLYFP 266
Query: 101 EIAKLLSQ 108
I +L+++
Sbjct: 267 RIPELMNR 274
>sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Mus musculus
GN=Smarcd1 PE=1 SV=3
Length = 515
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIA 103
+L++ LG + +R ++ +WQYI+ H LQ+P + + CD L+ IF + + F EI
Sbjct: 300 RLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQ-RMKFSEIP 358
Query: 104 KLL 106
+ L
Sbjct: 359 QRL 361
>sp|Q2TBN1|SMRD1_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1
PE=2 SV=1
Length = 515
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIA 103
+L++ LG + +R ++ +WQYI+ H LQ+P + + CD L+ IF + + F EI
Sbjct: 300 RLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQ-RMKFSEIP 358
Query: 104 KLL 106
+ L
Sbjct: 359 QRL 361
>sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Homo sapiens
GN=SMARCD1 PE=1 SV=2
Length = 515
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIA 103
+L++ LG + +R ++ +WQYI+ H LQ+P + + CD L+ IF + + F EI
Sbjct: 300 RLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQ-RMKFSEIP 358
Query: 104 KLL 106
+ L
Sbjct: 359 QRL 361
>sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis
thaliana GN=NERD PE=1 SV=3
Length = 1773
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 66 YIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVK 112
YI++++L++P K ++ CD +L+ +F GK VG E+ LL HF+K
Sbjct: 839 YIKRYNLRDPRRKSQVICDSRLQNLF-GKSHVGHFEMLNLLDSHFLK 884
>sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana
GN=At5g14170 PE=1 SV=1
Length = 534
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 41 VSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFL 100
+S L LG +R + IW Y++ LQNP + CD L+ +F G++ + F
Sbjct: 321 LSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF-GEEKLKFT 379
Query: 101 EIAKLLSQHF 110
+++ +S H
Sbjct: 380 MVSQKISHHL 389
>sp|Q91FL8|VF306_IIV6 Putative SWIB domain-containing protein 306R OS=Invertebrate
iridescent virus 6 GN=IIV6-306R PE=3 SV=1
Length = 312
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 31 AKGGIGKPVPVSAQLSKFLGANEA---SRSDAVKKIWQYIRQHDLQNPANKREIRCDDKL 87
A G+GK ++ L+KFLG + + SR+D K I +++ + LQN NK+ I CD L
Sbjct: 138 ANTGLGKLRVITNDLAKFLGCDPSEMKSRNDVTKAICKHVEEKKLQNQENKKIIMCDTML 197
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 58 DAVKKIW-QYIRQHDLQNPANKREIRCDDKLKTIFNGK 94
D V KI+ YIR++ L++ NKR+I DD LK++F +
Sbjct: 265 DDVNKIFSDYIRENSLKDTVNKRKIILDDNLKSLFKSR 302
>sp|Q196Z0|VF306_IIV3 Putative SWIB domain-containing protein 070L OS=Invertebrate
iridescent virus 3 GN=IIV3-070L PE=3 SV=1
Length = 282
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 34 GIGKPVPVSAQLSKF----LGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKT 89
G+ KP +S ++ F G E SR D K + YI+ +DL++ +NK I D KLK
Sbjct: 97 GLEKPRMISEAMATFADWEYGKTEKSRYDVTKYLCAYIKDNDLRDASNKTIILPDAKLKK 156
Query: 90 IFNGKDSV--GFLEIAKLLSQHF 110
+ DSV + + K L F
Sbjct: 157 LLQVDDSVVLKYPTMQKYLKHCF 179
>sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis
thaliana GN=At3g51120 PE=2 SV=3
Length = 1292
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 55 SRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQH 109
S+ D + YI++ +L++P K ++ CD L +F GK VG E+ KLL H
Sbjct: 340 SQFDVQGLLLDYIKKKNLRDPLQKSQVLCDQMLVKLF-GKQRVGHFEMLKLLESH 393
>sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430 OS=Arabidopsis thaliana
GN=At5g08430 PE=1 SV=2
Length = 553
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 42 SAQLSKFL---GANEA---SRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKD 95
S QL +FL G + + SR D I +YI + L +P+NK+++ CD +L +F G
Sbjct: 34 SRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLF-GTR 92
Query: 96 SVGFLEIAKLLSQHF 110
++ +++ LL +H+
Sbjct: 93 TIFRMKVYDLLEKHY 107
>sp|Q6P9Z1|SMRD3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 3 OS=Mus musculus
GN=Smarcd3 PE=1 SV=2
Length = 483
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFN 92
+L++ LG + SRS V+ +WQY++ + LQ+ +K I D + IF+
Sbjct: 268 RLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFD 316
>sp|Q6STE5|SMRD3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 3 OS=Homo sapiens
GN=SMARCD3 PE=1 SV=1
Length = 483
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFN 92
+L++ LG + SRS V+ +WQY++ + LQ+ +K I D + IF+
Sbjct: 268 RLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFD 316
>sp|Q556Z0|SNF12_DICDI SWI/SNF complex component SNF12 homolog OS=Dictyostelium discoideum
GN=snf12-1 PE=3 SV=1
Length = 456
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 45 LSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAK 104
LS+ L + ++ + +W YI+ + L + A ++I CD+ LK IF+ + + F +I +
Sbjct: 245 LSQLLNIHTDTKPRIILALWHYIKSNTLLD-AETKKITCDENLKNIFS-LEELQFNQIPQ 302
Query: 105 LLSQHF 110
LL +H
Sbjct: 303 LLREHL 308
>sp|E1BJD1|SMRD2_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Bos taurus GN=SMARCD2
PE=3 SV=1
Length = 531
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFN 92
+L++ LG + +R+ ++ +W YI+ + LQ+ + I C+ + IF+
Sbjct: 316 RLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFS 364
>sp|Q92925|SMRD2_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Homo sapiens
GN=SMARCD2 PE=1 SV=3
Length = 531
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFN 92
+L++ LG + +R+ ++ +W YI+ + LQ+ + I C+ + IF+
Sbjct: 316 RLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFS 364
>sp|O54772|SMRD2_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Rattus norvegicus
GN=Smarcd2 PE=2 SV=3
Length = 531
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFN 92
+L++ LG + +R+ ++ +W YI+ + LQ+ + I C+ + IF+
Sbjct: 316 RLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFS 364
>sp|Q99JR8|SMRD2_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 OS=Mus musculus
GN=Smarcd2 PE=2 SV=2
Length = 531
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 44 QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFN 92
+L++ LG + +R+ ++ +W YI+ + LQ+ + I C+ + IF+
Sbjct: 316 RLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFS 364
>sp|Q5UQ74|YR508_MIMIV Putative SWIB domain-containing protein R508 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R508 PE=4 SV=1
Length = 335
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 9 YRTMMAAAAKSGAEATAAAGKKAKGGIGKPVPVSAQLSKFLGANEA--SRSDAVKKIWQY 66
++ + A KSG + GK + G KP V L L N+ SRS + +++Y
Sbjct: 223 HKKDLRLAVKSGNRLNS--GKHS--GFNKPQTVPQSLKDLLKINDDVLSRSKVTELMYKY 278
Query: 67 IRQHDLQNPANKREIRCDDKLKTIF 91
+ + N KREI + K+K +F
Sbjct: 279 FTDNKMYNSKTKREIIPNSKIKKLF 303
>sp|B9JWC4|GLMU_AGRVS Bifunctional protein GlmU OS=Agrobacterium vitis (strain S4 / ATCC
BAA-846) GN=glmU PE=3 SV=1
Length = 452
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 36 GKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQ 73
GK V V A ++ G N + ++K+WQ R+H+L
Sbjct: 213 GKAVAVDAPEAELAGCNNRAELAVIEKLWQERRRHELM 250
>sp|Q9LCC2|PHYA_NOSS1 Cyanobacterial phytochrome A OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=aphA PE=3 SV=1
Length = 765
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 51 ANEASRSDAVKKIWQYIRQHDLQNPANK-------REIRCDDKL 87
A++ RS+A K + Y+ HDLQ P N+ E+R D+L
Sbjct: 519 AHDLERSNAELKKFAYVASHDLQEPLNQVANYVQLLEMRYQDQL 562
>sp|Q7XR80|ARP8_ORYSJ Actin-related protein 8 OS=Oryza sativa subsp. japonica GN=ARP8
PE=2 SV=1
Length = 484
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 38 PVPVSAQLSKFLGANEASRSDAVKKIWQYI 67
P+ V AQ+ + LG +A+RS AV + W+ +
Sbjct: 51 PIDVLAQILRLLGPADAARSTAVCRAWRLL 80
>sp|A8WAT2|ARP8_ORYSI Actin-related protein 8 OS=Oryza sativa subsp. indica GN=ARP8
PE=2 SV=1
Length = 484
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 38 PVPVSAQLSKFLGANEASRSDAVKKIWQYI 67
P+ V AQ+ + LG +A+RS AV + W+ +
Sbjct: 51 PIDVLAQILRLLGPADAARSTAVCRAWRLL 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,325,151
Number of Sequences: 539616
Number of extensions: 1283991
Number of successful extensions: 5588
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5538
Number of HSP's gapped (non-prelim): 55
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)