Query 048564
Match_columns 114
No_of_seqs 110 out of 585
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 18:37:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v31_A Hypothetical protein RA 100.0 4.5E-31 1.6E-35 179.9 5.7 79 34-113 7-85 (93)
2 1uhr_A SWI/SNF related, matrix 100.0 1.6E-30 5.5E-35 177.3 4.0 78 35-113 8-85 (93)
3 1v32_A AT5G08430, hypothetical 100.0 2.4E-29 8.1E-34 174.2 6.9 74 39-113 14-93 (101)
4 3dac_M MDM4 protein; MDMX, MDM 97.7 5.5E-05 1.9E-09 54.0 5.0 74 38-112 24-106 (130)
5 3fea_A MDM4 protein; HDMX, HDM 97.4 0.00012 4.3E-09 50.1 4.1 73 39-112 16-97 (100)
6 2z5s_M MDM4 protein, zebrafish 97.4 0.00022 7.4E-09 51.3 5.0 72 38-110 23-103 (140)
7 1ycq_A MDM2, MDM2; anti-oncoge 97.4 0.00033 1.1E-08 48.6 5.5 72 38-110 11-91 (107)
8 1z1m_A Ubiquitin-protein ligas 97.3 0.00031 1.1E-08 49.4 4.7 73 38-111 27-108 (119)
9 2axi_A Ubiquitin-protein ligas 97.1 0.00036 1.2E-08 48.9 3.2 72 38-110 11-91 (115)
10 2kwl_A ACP, acyl carrier prote 86.1 1.2 4.2E-05 27.2 4.4 57 50-110 1-57 (84)
11 1f80_D Acyl carrier protein; t 77.8 2.5 8.5E-05 25.4 3.5 54 53-110 2-55 (81)
12 2lol_A ACP, acyl carrier prote 76.1 6 0.0002 23.7 4.9 53 54-110 2-54 (81)
13 2cnr_A FAS, ACP, acyl carrier 74.6 6.8 0.00023 23.3 4.9 53 54-110 3-55 (82)
14 2dnw_A Acyl carrier protein; A 69.3 5.5 0.00019 25.2 3.7 57 50-110 7-63 (99)
15 1x3o_A Acyl carrier protein; s 66.1 4.8 0.00016 23.8 2.8 53 54-110 1-53 (80)
16 1dv5_A APO-DCP, APO-D-alanyl c 65.9 5.4 0.00018 24.4 3.0 52 55-110 1-52 (80)
17 3e6c_C CPRK, cyclic nucleotide 65.6 4.1 0.00014 29.0 2.8 63 43-109 181-250 (250)
18 1klp_A ACP, ACPM, meromycolate 57.7 13 0.00044 24.2 3.9 54 53-110 2-55 (115)
19 2l4b_A Acyl carrier protein; i 57.5 2.7 9.3E-05 25.9 0.5 56 53-110 3-59 (88)
20 2zcw_A TTHA1359, transcription 55.3 7.2 0.00025 26.7 2.4 50 39-92 145-196 (202)
21 2jq4_A AGR_C_4658P, hypothetic 53.6 12 0.0004 24.3 3.1 56 52-110 16-71 (105)
22 2fmy_A COOA, carbon monoxide o 51.8 8.4 0.00029 26.6 2.3 50 39-92 166-218 (220)
23 2ava_A ACP I, acyl carrier pro 50.7 21 0.00071 21.2 3.8 52 55-110 1-52 (82)
24 1vku_A Acyl carrier protein; T 50.7 22 0.00074 22.9 4.1 54 52-110 11-64 (100)
25 3b02_A Transcriptional regulat 50.5 9 0.00031 26.1 2.3 50 39-92 138-189 (195)
26 2cgq_A Acyl carrier protein AC 50.4 9.8 0.00033 25.5 2.4 52 49-110 22-73 (113)
27 3fx3_A Cyclic nucleotide-bindi 48.1 21 0.00071 24.8 4.0 46 43-93 182-228 (237)
28 2gau_A Transcriptional regulat 46.1 8 0.00027 26.9 1.5 50 39-92 179-230 (232)
29 1ft9_A Carbon monoxide oxidati 45.5 16 0.00054 25.3 2.9 52 37-92 160-214 (222)
30 3e97_A Transcriptional regulat 45.4 13 0.00044 25.8 2.5 51 38-92 173-225 (231)
31 1af8_A Actinorhodin polyketide 43.6 18 0.00063 21.7 2.7 51 58-110 5-56 (86)
32 3ce7_A Specific mitochodrial a 43.4 27 0.00092 22.7 3.7 52 54-110 15-71 (107)
33 2cpg_A REPA protein, transcrip 43.2 7.5 0.00026 21.0 0.8 32 39-70 7-43 (45)
34 2bgc_A PRFA; bacterial infecti 42.1 13 0.00045 26.1 2.1 49 40-92 169-220 (238)
35 3gzm_A Acyl carrier protein; h 41.9 30 0.001 20.6 3.5 52 55-110 2-53 (81)
36 3d0s_A Transcriptional regulat 40.9 14 0.00046 25.6 2.0 47 40-90 177-225 (227)
37 3ejb_A Acyl carrier protein; p 40.7 20 0.00068 22.7 2.6 55 52-110 16-70 (97)
38 1jw2_A Hemolysin expression mo 38.5 5.7 0.00019 25.4 -0.3 8 61-68 65-72 (72)
39 3la7_A Global nitrogen regulat 37.7 12 0.00039 26.6 1.2 49 39-91 192-242 (243)
40 4ev0_A Transcription regulator 37.4 16 0.00053 24.9 1.8 50 39-92 162-213 (216)
41 2qnw_A Acyl carrier protein; m 36.4 33 0.0011 20.4 3.1 52 55-110 4-55 (82)
42 3dkw_A DNR protein; CRP-FNR, H 35.7 13 0.00043 25.6 1.1 44 43-90 182-226 (227)
43 2ld7_A Histone deacetylase com 35.6 47 0.0016 21.9 3.9 16 61-76 30-45 (94)
44 2k9i_A Plasmid PRN1, complete 35.6 22 0.00075 19.7 2.0 34 38-71 13-51 (55)
45 3dv8_A Transcriptional regulat 32.8 38 0.0013 23.0 3.2 45 43-91 173-218 (220)
46 2hza_A Nickel-responsive regul 30.4 29 0.001 23.5 2.3 40 39-78 6-51 (133)
47 2bj7_A Nickel responsive regul 26.2 45 0.0015 22.7 2.6 38 39-76 8-51 (138)
48 2lnh_A N-WAsp, neural wiskott- 25.8 38 0.0013 20.8 2.0 33 39-71 21-58 (65)
49 1o5l_A Transcriptional regulat 24.6 16 0.00054 25.3 0.0 38 43-84 168-205 (213)
50 1zyb_A Transcription regulator 24.2 33 0.0011 23.9 1.7 43 39-85 185-228 (232)
51 1nq4_A Oxytetracycline polyket 24.0 1.2E+02 0.0042 18.7 4.3 53 53-110 3-55 (95)
52 1awc_A Protein (GA binding pro 23.7 1.2E+02 0.0042 20.5 4.4 47 63-110 3-63 (110)
53 3fwk_A FMN adenylyltransferase 23.5 30 0.001 27.3 1.5 12 62-73 204-215 (308)
54 1bc8_C SAP-1, protein (SAP-1 E 23.4 94 0.0032 20.4 3.7 47 62-109 6-66 (93)
55 1yu8_X Villin; alpha helix, 3- 22.0 25 0.00087 21.8 0.6 35 73-108 24-58 (67)
56 2oq2_A Phosphoadenosine phosph 21.9 35 0.0012 25.3 1.5 12 62-73 194-205 (261)
57 1z4h_A TORI, TOR inhibition pr 21.8 59 0.002 19.0 2.3 48 43-110 14-61 (66)
58 1kqn_A Nmnat, nicotinamide mon 21.6 20 0.00068 27.3 0.1 16 59-74 240-255 (279)
59 1qzp_A Dematin; villin headpie 21.4 21 0.00072 22.2 0.1 35 73-108 25-59 (68)
60 2l3v_A ACP, acyl carrier prote 21.3 28 0.00095 20.3 0.7 50 57-110 3-52 (79)
61 2wvf_A Hpnikr, putative nickel 21.0 52 0.0018 22.9 2.1 36 39-74 15-56 (148)
62 2k6m_S Supervillin; SVHP, HP, 20.8 18 0.00062 22.5 -0.3 34 73-107 24-57 (67)
63 4dxe_H ACP, acyl carrier prote 20.8 52 0.0018 21.1 2.0 53 54-110 22-74 (101)
64 3h05_A Uncharacterized protein 20.8 32 0.0011 24.4 1.0 14 61-74 158-171 (177)
65 2jx3_A Protein DEK; alpha heli 20.3 93 0.0032 21.3 3.3 33 44-81 82-115 (131)
66 1k4m_A NAMN adenylyltransferas 20.3 25 0.00085 25.1 0.3 16 58-73 197-212 (213)
67 1nup_A FKSG76; NAD biosynthesi 20.2 25 0.00085 26.1 0.3 18 59-76 219-236 (252)
68 2k7r_A Primosomal protein DNAI 20.2 66 0.0023 20.8 2.4 33 41-73 30-67 (106)
69 1ej5_A WAsp, wiskott-aldrich s 20.0 79 0.0027 21.2 2.8 36 40-75 21-61 (107)
No 1
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.97 E-value=4.5e-31 Score=179.90 Aligned_cols=79 Identities=25% Similarity=0.589 Sum_probs=75.4
Q ss_pred CCCCCccCCHHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccccCC
Q 048564 34 GIGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKS 113 (114)
Q Consensus 34 g~~~~~~lSp~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl~k~ 113 (114)
.+.++|++||+|++|+|..++||++|++.||+|||+||||||+||+.|+||++|++||| ++++.|++|+++|++||.+.
T Consensus 7 ~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg-~~~v~~~~~~klL~~Hl~p~ 85 (93)
T 1v31_A 7 GVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFG-EEKLKFTMVSQKISHHLSPP 85 (93)
T ss_dssp SSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSC-SSEEETTTTHHHHHHHCBCC
T ss_pred CCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhC-CCcccHHHHHHHHHHhcCCC
Confidence 45689999999999999999999999999999999999999999999999999999997 89999999999999999763
No 2
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.96 E-value=1.6e-30 Score=177.27 Aligned_cols=78 Identities=27% Similarity=0.577 Sum_probs=74.4
Q ss_pred CCCCccCCHHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccccCC
Q 048564 35 IGKPVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVKS 113 (114)
Q Consensus 35 ~~~~~~lSp~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl~k~ 113 (114)
-.++|++||+|++|+|.+++||++|++.||+|||+||||||+||+.|+||++|++||| ++++.|++|+++|++||...
T Consensus 8 ~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg-~~~v~~~~~~klL~~Hl~p~ 85 (93)
T 1uhr_A 8 QPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFE-SQRMKFSEIPQRLHALLMPP 85 (93)
T ss_dssp SCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTC-CSSEEGGGSHHHHHHHEECS
T ss_pred CCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhC-CCcccHHHHHHHHHHhcCCC
Confidence 4578999999999999999999999999999999999999999999999999999997 79999999999999999763
No 3
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.96 E-value=2.4e-29 Score=174.24 Aligned_cols=74 Identities=31% Similarity=0.518 Sum_probs=70.5
Q ss_pred ccCCHHHHhhh---CC---CccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccccC
Q 048564 39 VPVSAQLSKFL---GA---NEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVK 112 (114)
Q Consensus 39 ~~lSp~La~fl---G~---~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl~k 112 (114)
-.+||+|++|| |. +++||++|++.||+|||+||||||.||+.|+||++|++||| +++|.|++|+++|++||.+
T Consensus 14 ~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg-~~~v~~~~m~klL~~Hl~~ 92 (101)
T 1v32_A 14 GWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFG-TRTIFRMKVYDLLEKHYKE 92 (101)
T ss_dssp SSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTC-CSEEETTHHHHHHHHHSCS
T ss_pred ccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHC-CCcccHHHHHHHHHHHcCc
Confidence 38999999999 87 67999999999999999999999999999999999999997 8999999999999999987
Q ss_pred C
Q 048564 113 S 113 (114)
Q Consensus 113 ~ 113 (114)
.
T Consensus 93 ~ 93 (101)
T 1v32_A 93 N 93 (101)
T ss_dssp C
T ss_pred c
Confidence 4
No 4
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=97.67 E-value=5.5e-05 Score=53.98 Aligned_cols=74 Identities=20% Similarity=0.339 Sum_probs=63.4
Q ss_pred CccCCHHHHhhh---C--CCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhCCCCcccHHH---HHHHHhc
Q 048564 38 PVPVSAQLSKFL---G--ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFNGKDSVGFLE---IAKLLSQ 108 (114)
Q Consensus 38 ~~~lSp~La~fl---G--~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg~~~~v~~~e---l~~lL~~ 108 (114)
.++--++|-.+| | .+..|+.||...+=+||-.+.|.||.+..+|.|. +.|.++|| +++|++.+ |.+.|.+
T Consensus 24 ~Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llG-v~sFSVkdp~~L~~mL~~ 102 (130)
T 3dac_M 24 QVHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLE-VGSFSVKNPSPLYEMLKR 102 (130)
T ss_dssp EEEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHT-SSEEETTSCHHHHHHHHH
T ss_pred ecCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccC-CcceeecCcHHHHHHHHh
Confidence 355557777777 4 3789999999999999999999999999999996 78999998 89998866 9999988
Q ss_pred cccC
Q 048564 109 HFVK 112 (114)
Q Consensus 109 Hl~k 112 (114)
+|+.
T Consensus 103 NLv~ 106 (130)
T 3dac_M 103 NLVI 106 (130)
T ss_dssp HEEE
T ss_pred heec
Confidence 8764
No 5
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=97.44 E-value=0.00012 Score=50.12 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=62.2
Q ss_pred ccCCHHHHhhh---C--CCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhCCCCcccHH---HHHHHHhcc
Q 048564 39 VPVSAQLSKFL---G--ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFNGKDSVGFL---EIAKLLSQH 109 (114)
Q Consensus 39 ~~lSp~La~fl---G--~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg~~~~v~~~---el~~lL~~H 109 (114)
++--++|-.+| | .+..|+.||+..+=+||-.+.|.||.+..+|.|. +.|-++|| ++++++. .+.+.|.+|
T Consensus 16 Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G-~~sFsvkdp~~l~~ml~~n 94 (100)
T 3fea_A 16 VRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLG-RQSFSVKDPSPLYDMLRKN 94 (100)
T ss_dssp BEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHT-CSEEETTCCHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccC-CcceeecCchHHHHHHHhh
Confidence 44556777776 4 3789999999999999999999999999999997 78899998 8888774 888899888
Q ss_pred ccC
Q 048564 110 FVK 112 (114)
Q Consensus 110 l~k 112 (114)
|+.
T Consensus 95 Lv~ 97 (100)
T 3fea_A 95 LVT 97 (100)
T ss_dssp EEC
T ss_pred cee
Confidence 864
No 6
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=97.39 E-value=0.00022 Score=51.31 Aligned_cols=72 Identities=19% Similarity=0.336 Sum_probs=59.7
Q ss_pred CccCCHHHHhhh---C--CCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhCCCCcccHH---HHHHHHhc
Q 048564 38 PVPVSAQLSKFL---G--ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFNGKDSVGFL---EIAKLLSQ 108 (114)
Q Consensus 38 ~~~lSp~La~fl---G--~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg~~~~v~~~---el~~lL~~ 108 (114)
.++--++|-.+| | .+..|+.||+..|-+||-.+.|.|+.+..+|.|. +.|-+||| +++|++- -+.+.|.+
T Consensus 23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~G-v~sFSVKdp~~ly~ML~~ 101 (140)
T 2z5s_M 23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLE-VGSFSVKNPSPVYEMLKR 101 (140)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHT-SSEEETTBCHHHHHHHHH
T ss_pred eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccC-ccceeecCcHHHHHHHHH
Confidence 677778888888 4 3689999999999999999999999999999997 77899998 7888774 44455554
Q ss_pred cc
Q 048564 109 HF 110 (114)
Q Consensus 109 Hl 110 (114)
.|
T Consensus 102 NL 103 (140)
T 2z5s_M 102 NL 103 (140)
T ss_dssp HE
T ss_pred hc
Confidence 44
No 7
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=97.37 E-value=0.00033 Score=48.55 Aligned_cols=72 Identities=19% Similarity=0.371 Sum_probs=58.4
Q ss_pred CccCCHHHHhhh---C--CCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhCCCCcccHHH---HHHHHhc
Q 048564 38 PVPVSAQLSKFL---G--ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFNGKDSVGFLE---IAKLLSQ 108 (114)
Q Consensus 38 ~~~lSp~La~fl---G--~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg~~~~v~~~e---l~~lL~~ 108 (114)
.++-.+.|-.+| | ....|+.+|+..+-+||-.+.|.|+.+..+|.|. +.|-++|| ++++++-+ +.+.|.+
T Consensus 11 ~VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g-~~~Fsvkdp~~l~~ml~~ 89 (107)
T 1ycq_A 11 LVQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFG-VQEFSVKEPRRLYAMISR 89 (107)
T ss_dssp CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHT-CSEEETTCHHHHHHHHHT
T ss_pred ccCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccC-ccceeecCcHHHHHHHHH
Confidence 456667777777 3 3678999999999999999999999999999997 77899998 78887744 4455555
Q ss_pred cc
Q 048564 109 HF 110 (114)
Q Consensus 109 Hl 110 (114)
.+
T Consensus 90 nL 91 (107)
T 1ycq_A 90 NL 91 (107)
T ss_dssp TE
T ss_pred hc
Confidence 44
No 8
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=97.28 E-value=0.00031 Score=49.43 Aligned_cols=73 Identities=22% Similarity=0.327 Sum_probs=57.2
Q ss_pred CccCCHHHHhhh---C--CCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhCCCCcccHH---HHHHHHhc
Q 048564 38 PVPVSAQLSKFL---G--ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFNGKDSVGFL---EIAKLLSQ 108 (114)
Q Consensus 38 ~~~lSp~La~fl---G--~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg~~~~v~~~---el~~lL~~ 108 (114)
.++-.++|-.+| | ....|+.||+..+-+||-.+.|.|+.+..+|.|. +.|-++|| +++|.+- .+.+.|.+
T Consensus 27 ~VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g-~~~Fsvkdp~~l~~ml~~ 105 (119)
T 1z1m_A 27 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFG-VPSFSVKEHRKIYTMIYR 105 (119)
T ss_dssp CCCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSC-CSCEETTCHHHHHHHHSC
T ss_pred cccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccC-ccceeecCcHHHHHHHHH
Confidence 445556666666 4 3678999999999999999999999999999997 77899998 7888774 44555544
Q ss_pred ccc
Q 048564 109 HFV 111 (114)
Q Consensus 109 Hl~ 111 (114)
.|+
T Consensus 106 nLv 108 (119)
T 1z1m_A 106 NLV 108 (119)
T ss_dssp SCC
T ss_pred hcc
Confidence 443
No 9
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=97.07 E-value=0.00036 Score=48.85 Aligned_cols=72 Identities=21% Similarity=0.316 Sum_probs=58.1
Q ss_pred CccCCHHHHhhh---C--CCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhCCCCcccHH---HHHHHHhc
Q 048564 38 PVPVSAQLSKFL---G--ANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFNGKDSVGFL---EIAKLLSQ 108 (114)
Q Consensus 38 ~~~lSp~La~fl---G--~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg~~~~v~~~---el~~lL~~ 108 (114)
.++-.++|-.+| | ....|+.+|+-.+-+||-.+.|.|+.+..+|.|. +.|-++|| +++|++- .+.+.|.+
T Consensus 11 ~VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g-~~~Fsvkdp~~l~~ml~~ 89 (115)
T 2axi_A 11 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFG-VPSFSVKEHRKIYTMIYR 89 (115)
T ss_dssp EEEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHS-SSEEETTCHHHHHHHHHT
T ss_pred ccCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccC-ccceeecCcHHHHHHHHH
Confidence 455667777777 3 3678999999999999999999999999999997 77899998 7888774 45555554
Q ss_pred cc
Q 048564 109 HF 110 (114)
Q Consensus 109 Hl 110 (114)
-|
T Consensus 90 nL 91 (115)
T 2axi_A 90 NL 91 (115)
T ss_dssp TE
T ss_pred hc
Confidence 44
No 10
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=86.08 E-value=1.2 Score=27.22 Aligned_cols=57 Identities=23% Similarity=0.353 Sum_probs=43.9
Q ss_pred CCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 50 GANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 50 G~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
|...|++.++...|.+.|.+.-=.++ ..|..|..|..-+| -+++.+-++...|..+|
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG-~DSl~~vel~~~le~~f 57 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQLDKKE---DEITTDSRFVEDLN-ADSLDIYELLYLLEEAF 57 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHHHCCCG---GGCCTTTHHHHTSS-SCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCc---ccCCCCCchhhhcC-CCHHHHHHHHHHHHHHH
Confidence 45679999999999999988632332 46889999966676 58888888888887765
No 11
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=77.81 E-value=2.5 Score=25.45 Aligned_cols=54 Identities=13% Similarity=0.263 Sum_probs=39.7
Q ss_pred ccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 53 EASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 53 ~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
.|++.++...|.++|.+.-=.++ ..|..|..|..-+| -+++.+-++...|+.+|
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~---~~i~~~~~l~~dlG-~DSl~~vel~~~le~~f 55 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDE---ADVKLEASFKEDLG-ADXLDVVELVMELEDEF 55 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCS---SCCCTTCBHHHHSC-CCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH---HhCCCccchHHHcC-CcHHHHHHHHHHHHHHh
Confidence 57888999999999988642333 35888999966676 58898888888888776
No 12
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=76.14 E-value=6 Score=23.65 Aligned_cols=53 Identities=11% Similarity=0.215 Sum_probs=39.7
Q ss_pred cCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 54 ASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 54 ~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
||+.++...|.+.|.+.-=.++ ..|..|..|..-+| -+++..-++...|+.+|
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~---~~i~~~~~l~~dlG-~DSl~~~el~~~le~~f 54 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDK---AIITTDSRFIEDLK-ADSLDTVELMMAIEVEY 54 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCT---TTCCTTCCHHHHTT-CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCh---hhCCCCCcHHHhcC-CcHHHHHHHHHHHHHHH
Confidence 6889999999999888532333 35788888865565 58888888888887765
No 13
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=74.64 E-value=6.8 Score=23.30 Aligned_cols=53 Identities=13% Similarity=0.262 Sum_probs=39.5
Q ss_pred cCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 54 ASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 54 ~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
|+|.++...|.++|.+.-=.++ ..|..|..|..-+| -+++..-++...|+.+|
T Consensus 3 m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG-~DSl~~~~l~~~le~~f 55 (82)
T 2cnr_A 3 ATQEEIVAGLAEIVNEIAGIPV---EDVKLDKSFTDDLD-VDSLSMVEVVVAAEERF 55 (82)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCT---TTCCTTSBTTTTSC-CCHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCCcchhhccC-CChHHHHHHHHHHHHHh
Confidence 7899999999999987642232 35777887754455 58888888888888776
No 14
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.34 E-value=5.5 Score=25.25 Aligned_cols=57 Identities=14% Similarity=0.258 Sum_probs=39.0
Q ss_pred CCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 50 GANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 50 G~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
+...+++.+|...|.+.+.+.-=.++ ..|..|..|..-+| -+++.+-+|...|+.+|
T Consensus 7 ~m~~m~~~~i~~~l~~~l~~~l~~~~---~~i~~d~~l~~dlG-~DSL~~vel~~~le~~f 63 (99)
T 2dnw_A 7 GMPPLTLEGIQDRVLYVLKLYDKIDP---EKLSVNSHFMKDLG-LDSLDQVEIIMAMEDEF 63 (99)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTSCT---TTCCTTCCCCCCCC-CCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCH---hhCCCCCchhhhcC-CCHHHHHHHHHHHHHHH
Confidence 45679999999999999987632233 24667777643344 47777777777776655
No 15
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=66.11 E-value=4.8 Score=23.84 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=36.9
Q ss_pred cCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 54 ASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 54 ~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
|+|.++...|.++|.+.-=.+ ...|..|..|..-+| -+++.+-++...|+.+|
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~---~~~i~~~~~l~~~lG-~DSl~~~~l~~~le~~f 53 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVE---PEKVTLEARFIEDLG-ADSLDTVELIMGLEDEF 53 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCC---GGGCCTTCBTTTTTC-CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCC---HHHCCCcCcHHhhcC-ccHHHHHHHHHHHHHHH
Confidence 678899899988888752122 235777777755565 57888878877777665
No 16
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=65.93 E-value=5.4 Score=24.37 Aligned_cols=52 Identities=13% Similarity=0.078 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 55 SRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 55 sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
++.++...|.++|.+.--.|+ ..|..|..|..+-+ -+++.+-+|.-.|..+|
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~---~~i~~d~~l~~~g~-lDSl~~velv~~lE~~f 52 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDD---VKKNLDLNLFETGL-LDSMGTVQLLLELQSQF 52 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSS---TTTCSSCCSSTTSS-CCSHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHHHhCCCc---ccCCCCcchhhccC-cChHHHHHHHHHHHHHh
Confidence 467888899999987653332 24788888877643 68999999999998877
No 17
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=65.58 E-value=4.1 Score=29.02 Aligned_cols=63 Identities=11% Similarity=0.283 Sum_probs=35.1
Q ss_pred HHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhCCCCc------ccHHHHHHHHhcc
Q 048564 43 AQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFNGKDS------VGFLEIAKLLSQH 109 (114)
Q Consensus 43 p~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg~~~~------v~~~el~~lL~~H 109 (114)
.+||+++|++..| | .++..-.++.|+.+-..+++++.| +.|+++.++... -.+..+.++|..|
T Consensus 181 ~~iA~~lG~sr~t---v-sR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~a~~~~~~~~~~~~~~~~l~~~~~~~ 250 (250)
T 3e6c_C 181 KSIGEITGVHHVT---V-SRVLASLKRENILDKKKNKIIVYNLGELKHLSEQTSYYSDPNSSSVDKLAAALDHH 250 (250)
T ss_dssp HHHHHHHTCCHHH---H-HHHHHHHHHTTSEEECSSEEEESCHHHHHHHHTSSCCCC-----------------
T ss_pred HHHHHHhCCcHHH---H-HHHHHHHHHCCCeEeCCCEEEEecHHHHHHHHccCcccccCCchhHHHHHHhhccC
Confidence 4899999975433 3 333445667888888888888888 889999874221 2334555666554
No 18
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=57.72 E-value=13 Score=24.23 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=39.2
Q ss_pred ccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 53 EASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 53 ~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
.|++.+|...|.+.|.+.==.++ ..|..|..|..-+| -|++.+-+|...|..+|
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~~---~~i~~d~~l~~dlG-~DSL~~vel~~~lE~~f 55 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIEP---SEITPEKSFVDDLD-IDSLSMVEIAVQTEDKY 55 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCT---TTCCTTCCTTTTTC-SHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhCcCH---HhCCCCCchhhccC-CCHHHHHHHHHHHHHHH
Confidence 37899999999999987532233 35777887755565 57888888887777765
No 19
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=57.53 E-value=2.7 Score=25.94 Aligned_cols=56 Identities=18% Similarity=0.287 Sum_probs=39.2
Q ss_pred ccCHHHHHHHHHHHHHHhC-CCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 53 EASRSDAVKKIWQYIRQHD-LQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 53 ~~sR~eV~~~lW~YIK~nn-LqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
.|++.+|...|.++|.+.- +.+ -+...|..|..|..-+| -|++.+-+|.-.|..+|
T Consensus 3 ~m~~~~i~~~v~~~i~~~l~~~~-~~~~~i~~d~~l~~dlg-lDSl~~vel~~~lE~~f 59 (88)
T 2l4b_A 3 SMVSEEIKAQVMESVIGCLKLND-EQKQILSGTTNLAKDFN-LDSLDFVDLIMSLEERF 59 (88)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCH-HHHHSCCTTSCTTTTTT-CCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhhCC-CCHhhCCCCCchhhccC-CcHHHHHHHHHHHHHHH
Confidence 4789999999999998863 211 01124777777755565 68888888888877765
No 20
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=55.31 E-value=7.2 Score=26.68 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=35.2
Q ss_pred ccCC-HHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhC
Q 048564 39 VPVS-AQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFN 92 (114)
Q Consensus 39 ~~lS-p~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg 92 (114)
..+| .+||+++|.+..|=+ ++..-.++.|+..-..+++++.| +.|+.+.+
T Consensus 145 ~~~t~~~lA~~lg~sr~tvs----R~l~~L~~~g~I~~~~~~i~i~d~~~L~~~~~ 196 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVT----KVIGELAREGYIRSGYGKIQLLDLKGLKELAE 196 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHH----HHHHHHHHTTSEEEETTEEEESCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHH----HHHHHHHHCCCEEeCCCEEEEeCHHHHHHHhc
Confidence 4455 589999997544333 33334578888887778888888 67888876
No 21
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=53.63 E-value=12 Score=24.34 Aligned_cols=56 Identities=11% Similarity=0.049 Sum_probs=36.8
Q ss_pred CccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 52 NEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 52 ~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
...++.++...|.++|.+.--.+ .+...|..|..|.+ +| -+++.+-+|.-.|+..|
T Consensus 16 ~~~~~~~i~~~i~~il~~~l~~~-v~~~~i~~d~~l~d-lG-lDSL~~veLv~~lE~~f 71 (105)
T 2jq4_A 16 NLYFQGHMNATIREILAKFGQLP-TPVDTIADEADLYA-AG-LSSFASVQLMLGIEEAF 71 (105)
T ss_dssp -------CHHHHHHHHHHTSCCS-SCGGGCCTTSCGGG-GT-CCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhccC-CCcccCCCCCCHhh-cC-CCHHHHHHHHHHHHHHH
Confidence 45678889999999999863222 22346888999985 76 68899888888887765
No 22
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=51.77 E-value=8.4 Score=26.65 Aligned_cols=50 Identities=14% Similarity=0.262 Sum_probs=33.7
Q ss_pred ccCC-HHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCC-CCCccccc-hhHHhhhC
Q 048564 39 VPVS-AQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPA-NKREIRCD-DKLKTIFN 92 (114)
Q Consensus 39 ~~lS-p~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~-dKr~I~cD-ekLk~Lfg 92 (114)
..+| .+||+++|.+..|=+.+++. .++.|+..-. .+++++.| +.|+.+.+
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~----l~~~g~I~~~~~~~i~i~d~~~L~~~~~ 218 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLND----FKKMGILERVNQRTLLLKDLQKLKEFSS 218 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHH----HHHTTSEEESSSSEEEESCHHHHHHHCC
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHH----HHHCCCEEEcCCCEEEEcCHHHHHHHhc
Confidence 3444 58999999865444444333 4778888775 67787888 67877664
No 23
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=50.75 E-value=21 Score=21.22 Aligned_cols=52 Identities=15% Similarity=0.327 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 55 SRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 55 sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
||.++...|.+.|.+.==.++. ..|..|..|.+ +| -+++.+-+|...|..+|
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~--~~i~~~~~l~d-lG-~DSl~~vel~~~le~~f 52 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGAD--VVVTADSEFSK-LG-ADSLDTVEIVMNLEEEF 52 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSS--SCCCSSCCSCC-CT-TCCSCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHhCCCcc--cccCCCCchhh-cC-CCHHHHHHHHHHHHHHH
Confidence 5678888888888875323332 25777888774 55 58888888888887766
No 24
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=50.74 E-value=22 Score=22.94 Aligned_cols=54 Identities=9% Similarity=0.243 Sum_probs=41.5
Q ss_pred CccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 52 NEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 52 ~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
..|.|+++...|+++|.+.-=.++ ..|.+|..| .-+| -+++.+-+|...|...|
T Consensus 11 ~~~~~~~i~~~l~~ila~~l~v~~---~~I~~d~~L-~dLG-lDSL~~veL~~~LE~~f 64 (100)
T 1vku_A 11 HHMERKKLIAKFVEIASEKMGKDL---ETVDEENTF-KELG-FDSIDVIDLVMFFEDEF 64 (100)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCCCC---CSCCTTSBT-TTTT-CCHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHCCCH---HHCCCCCCH-HHcC-CchHHHHHHHHHHHHHH
Confidence 468899999999999988643333 358888888 5566 68888888888877665
No 25
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=50.49 E-value=9 Score=26.09 Aligned_cols=50 Identities=22% Similarity=0.188 Sum_probs=34.1
Q ss_pred ccCC-HHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhC
Q 048564 39 VPVS-AQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFN 92 (114)
Q Consensus 39 ~~lS-p~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg 92 (114)
+.+| .+||+++|.+..| |.+.+- -.++.|+.+-..+++++.| +.|+++.+
T Consensus 138 ~~~t~~~lA~~lg~sr~t---vsR~l~-~L~~~g~I~~~~~~i~i~d~~~L~~~~~ 189 (195)
T 3b02_A 138 VTVSHEEIADATASIRES---VSKVLA-DLRREGLIATAYRRVYLLDLAALEREAG 189 (195)
T ss_dssp EECCHHHHHHTTTSCHHH---HHHHHH-HHHHHTSEEEETTEEEECCHHHHHHHHC
T ss_pred ccCCHHHHHHHhCCCHHH---HHHHHH-HHHHCCCEEecCCEEEEeCHHHHHHHhc
Confidence 4455 4799999985443 333333 3467788777777888888 57888876
No 26
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=50.41 E-value=9.8 Score=25.48 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=36.6
Q ss_pred hCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 49 LGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 49 lG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
.+...| +.+|...|.++|.+.-= |..|..|..-+| -|++.+-+|.-.|...|
T Consensus 22 ~~~~~M-~~ei~~~v~~il~e~l~--------I~~d~~l~~dLG-lDSLd~veLi~~LEe~F 73 (113)
T 2cgq_A 22 YFQGAM-EEAINATIQRILRTDRG--------ITANQVLVDDLG-FDSLKLFQLITELEDEF 73 (113)
T ss_dssp ----CH-HHHHHHHHHHHHTCCSC--------CCTTCBTTTTTC-CCHHHHHHHHHHHHHHH
T ss_pred Hhcccc-HHHHHHHHHHHHHHHhC--------CCCCCchhhhcC-CCHHHHHHHHHHHHHHh
Confidence 344467 89999999999987531 777777766676 68888878777776655
No 27
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=48.09 E-value=21 Score=24.79 Aligned_cols=46 Identities=9% Similarity=0.070 Sum_probs=31.9
Q ss_pred HHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhCC
Q 048564 43 AQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFNG 93 (114)
Q Consensus 43 p~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg~ 93 (114)
.+||+++|++ |..|...+- -.++.|+ .-..+++++.| +.|+.+.+.
T Consensus 182 ~~iA~~lg~s---r~tvsR~l~-~L~~~gi-~~~~~~i~I~d~~~L~~~~~~ 228 (237)
T 3fx3_A 182 MLIAGRLGMK---PESLSRAFS-RLKAAGV-TVKRNHAEIEDIALLRDYAES 228 (237)
T ss_dssp HHHHHHTTCC---HHHHHHHHH-HHGGGTE-ECCTTEEEESCHHHHHHHHCC
T ss_pred HHHHHHhCCC---HHHHHHHHH-HHHHCCe-EeeCCEEEEcCHHHHHHHhcC
Confidence 6899999974 444444443 4556668 56667788888 889988873
No 28
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=46.14 E-value=8 Score=26.93 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=34.4
Q ss_pred ccCC-HHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhC
Q 048564 39 VPVS-AQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFN 92 (114)
Q Consensus 39 ~~lS-p~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg 92 (114)
..+| .+||+++|.+..|=+.+++. .++.|+..-..+++++.| +.|+.+.+
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~----l~~~g~I~~~~~~i~i~d~~~L~~~~~ 230 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLST----FVSERMLALDGKRIKIIDCDRLQKTAR 230 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHH----HHHTTSEEEETTEEEESCHHHHHHHHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHH----HHHCCCEeeCCCEEEEeCHHHHHHHhh
Confidence 3444 58999999865544444443 578888877777888888 57776653
No 29
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=45.47 E-value=16 Score=25.31 Aligned_cols=52 Identities=12% Similarity=0.208 Sum_probs=34.5
Q ss_pred CCccCC-HHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCC-ccccc-hhHHhhhC
Q 048564 37 KPVPVS-AQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKR-EIRCD-DKLKTIFN 92 (114)
Q Consensus 37 ~~~~lS-p~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr-~I~cD-ekLk~Lfg 92 (114)
-...+| .+||+++|.+..|=+.+++ -.++.|+..-..++ +++.| +.|+.+.+
T Consensus 160 ~~~~~t~~~lA~~lG~sr~tvsR~l~----~L~~~g~I~~~~~~i~~i~d~~~L~~~~~ 214 (222)
T 1ft9_A 160 VSVDFTVEEIANLIGSSRQTTSTALN----SLIKEGYISRQGRGHYTIPNLVRLKAAAD 214 (222)
T ss_dssp CEECCCHHHHHHHHCSCHHHHHHHHH----HHHHTTSSEECSTTCEECSSHHHHHHTC-
T ss_pred EeccCCHHHHHHHhCCcHHHHHHHHH----HHHHCCcEEEcCCceEEEcCHHHHHHHHh
Confidence 344555 5899999986544443333 35788888877777 45667 68888775
No 30
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=45.44 E-value=13 Score=25.82 Aligned_cols=51 Identities=10% Similarity=0.204 Sum_probs=35.1
Q ss_pred CccCC-HHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhC
Q 048564 38 PVPVS-AQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFN 92 (114)
Q Consensus 38 ~~~lS-p~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg 92 (114)
...+| .+||+++|++..|=+ ++..-.++.|+.+-..+++++.| +.|+.+-.
T Consensus 173 ~~~~t~~~iA~~lg~sr~tvs----R~l~~L~~~g~I~~~~~~i~i~d~~~L~~~a~ 225 (231)
T 3e97_A 173 VLPLGTQDIMARTSSSRETVS----RVLKRLEAHNILEVSPRSVTLLDLAALEALSF 225 (231)
T ss_dssp EECCCHHHHHHHHTCCHHHHH----HHHHHHHHTTSEEECSSCEEESCHHHHHHCC-
T ss_pred ecCCCHHHHHHHhCCcHHHHH----HHHHHHHHCCcEEecCCEEEEeCHHHHHHHHh
Confidence 34444 489999998654433 34444578888888888888888 66777654
No 31
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=43.57 E-value=18 Score=21.74 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCCCC-CCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 58 DAVKKIWQYIRQHDLQNPA-NKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 58 eV~~~lW~YIK~nnLqDp~-dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
.+...|.+.|.+.=-.++. +-..|..|..|. =+| -+++.+-++...|+.+|
T Consensus 5 ~~~~~l~~il~~~l~~~~~~~~~~i~~~~~l~-dlG-~DSL~~vel~~~le~~f 56 (86)
T 1af8_A 5 LTTDDLRRALVECAGETDGTDLSGDFLDLRFE-DIG-YDSLALMETAARLESRY 56 (86)
T ss_dssp SCHHHHHHHHHTTCCCCSCCCTTTCSSTTSTT-TTT-CCTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhCCCcccccccCCCCCChh-hcC-CCHHHHHHHHHHHHHHH
Confidence 3444555555543222333 112467788884 456 68899999988888776
No 32
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=43.41 E-value=27 Score=22.70 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=38.9
Q ss_pred cCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHH-----hhhCCCCcccHHHHHHHHhccc
Q 048564 54 ASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLK-----TIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 54 ~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk-----~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
+++.+|...|.++|.+.- .+ ...|..|..|. .=+| -+++.+-+|.-.|..+|
T Consensus 15 ~~~~~i~~~i~~il~e~l-~~---~~~i~~d~~l~~~~~~~dLg-lDSL~~veli~~lE~~f 71 (107)
T 3ce7_A 15 TDINAVTNYIVGMCQKFL-QK---GEKVTPSSKLEELRTREDRL-WDCLDTVEFVLDVEEIF 71 (107)
T ss_dssp TCHHHHHHHHHHHHHTTB-CT---TCCCCTTSCGGGSBBTTSSB-CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh-CC---ccccCCCCcccccCcccccC-CCHHHHHHHHHHHHHHH
Confidence 689999999999998763 23 23688888886 3345 58888888887777765
No 33
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=43.18 E-value=7.5 Score=21.02 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=21.3
Q ss_pred ccCCHHHHhhhC----CCccCHHHHHH-HHHHHHHHh
Q 048564 39 VPVSAQLSKFLG----ANEASRSDAVK-KIWQYIRQH 70 (114)
Q Consensus 39 ~~lSp~La~flG----~~~~sR~eV~~-~lW~YIK~n 70 (114)
+.+++++.+-|. ....||++++. +|-+|+..+
T Consensus 7 v~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~~~ 43 (45)
T 2cpg_A 7 ITLSESVLENLEKMAREMGLSKSAMISVALENYKKGQ 43 (45)
T ss_dssp EEEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHCC
T ss_pred EecCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 456666666653 24569999887 677787654
No 34
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=42.13 E-value=13 Score=26.13 Aligned_cols=49 Identities=18% Similarity=0.130 Sum_probs=35.5
Q ss_pred cCC-HHHHhhhCCCc-cCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhC
Q 048564 40 PVS-AQLSKFLGANE-ASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFN 92 (114)
Q Consensus 40 ~lS-p~La~flG~~~-~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg 92 (114)
.+| .+||+++|++. .|=+.+++. .++.|+.+-..+++++.| +.|+.+.+
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~----l~~~glI~~~~~~i~I~d~~~L~~~~~ 220 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISK----LKQEKVIVYKNSCFYVQNLDYLKRYAP 220 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHH----HHHTTSEEEETTEEEESCHHHHHHHCH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHH----HHHCCCEEecCCEEEEeCHHHHHHHhc
Confidence 455 58999999876 555555544 478888877777788888 57877764
No 35
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=41.93 E-value=30 Score=20.62 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 55 SRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 55 sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
++.+|...|.+.|.+.==.+ ...|..|..|..-+| -+++.+-++...|...|
T Consensus 2 ~~~~i~~~l~~ii~~~l~~~---~~~i~~d~~l~~dlg-~DSl~~vel~~~le~~f 53 (81)
T 3gzm_A 2 SLKSTFDDIKKIISKQLSVE---EDKIQMNSNFTKDLG-ADSLDLVELIMALEEKF 53 (81)
T ss_dssp CHHHHHHHHHHHHHHHHTCC---GGGCCTTCBHHHHSC-CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCcC---HHHCCCCCcchhhcC-CCHHHHHHHHHHHHHHH
Confidence 67888888888888752123 236888988876676 58888888887777655
No 36
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=40.86 E-value=14 Score=25.60 Aligned_cols=47 Identities=13% Similarity=0.282 Sum_probs=31.8
Q ss_pred cCCH-HHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhh
Q 048564 40 PVSA-QLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTI 90 (114)
Q Consensus 40 ~lSp-~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~L 90 (114)
.+|- +||+++|.+..|=+.+++. .++.|+.+-..+++++.| +.|+.+
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~----l~~~g~I~~~~~~i~i~d~~~L~~~ 225 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALAD----FAHRGWIRLEGKSVLISDSERLARR 225 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHH----HHHTTSEEEETTEEEESCHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHH----HHHCCCEEecCCEEEEcCHHHHHHh
Confidence 3454 7999999865444444433 577788777777888888 466654
No 37
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=40.67 E-value=20 Score=22.74 Aligned_cols=55 Identities=15% Similarity=0.185 Sum_probs=39.6
Q ss_pred CccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 52 NEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 52 ~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
..+|+.+|...|.+.|.+.==.++ ..|..|..|..-+| -+++.+-+|...|+..|
T Consensus 16 ~~~t~~~i~~~l~~iia~~l~~~~---~~i~~d~~l~~dLG-lDSL~~vel~~~lE~~f 70 (97)
T 3ejb_A 16 RGSHMSTIEERVKKIIGEQLGVKQ---EEVTNNASFVEDLG-ADSLDTVELVMALEEEF 70 (97)
T ss_dssp --CCCCCHHHHHHHHHHHHSCCCT---TTSCTTCBTTTTTC-CCTTHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHCcCH---HHCCCCCCchhhcC-CCHHHHHHHHHHHHHHH
Confidence 467888999999999987632233 35788888865666 68888888888877665
No 38
>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A
Probab=38.50 E-value=5.7 Score=25.41 Aligned_cols=8 Identities=38% Similarity=1.365 Sum_probs=5.2
Q ss_pred HHHHHHHH
Q 048564 61 KKIWQYIR 68 (114)
Q Consensus 61 ~~lW~YIK 68 (114)
..||.||+
T Consensus 65 ~sVW~~V~ 72 (72)
T 1jw2_A 65 SSVWKFIR 72 (72)
T ss_dssp HHHHHHCC
T ss_pred HHHhHhcC
Confidence 46777763
No 39
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=37.74 E-value=12 Score=26.62 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=28.3
Q ss_pred ccCC-HHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhh
Q 048564 39 VPVS-AQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIF 91 (114)
Q Consensus 39 ~~lS-p~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lf 91 (114)
..+| .+||+++|.+..|=+ ++..-.++.|+.+-+.+++++.| +.|++.|
T Consensus 192 ~~lt~~~lA~~lG~sr~tvs----R~l~~L~~~GlI~~~~~~i~I~d~~~L~~~~ 242 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVT----RLLGDLREKKMISIHKKKITVHKPVTLSRQF 242 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHH----HHHHHHHHTTSEEEETTEEEECC--------
T ss_pred ccCCHHHHHHHHCCcHHHHH----HHHHHHHHCCCEEEcCCEEEECCHHHHHhhh
Confidence 3444 599999996544333 33344577888877778888887 5565544
No 40
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=37.36 E-value=16 Score=24.94 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=34.3
Q ss_pred ccCC-HHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhhC
Q 048564 39 VPVS-AQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIFN 92 (114)
Q Consensus 39 ~~lS-p~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lfg 92 (114)
..+| .+||+++|.+..| +.++..-.++.|+.+-+.+++++.| +.|+++-+
T Consensus 162 ~~~t~~~lA~~lg~sr~t----vsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~~a~ 213 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRET----VSRVLHALAEEGVVRLGPGTVEVREAALLEEIAF 213 (216)
T ss_dssp EECCHHHHHHHHTSCHHH----HHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHH----HHHHHHHHHHCCCEEecCCEEEEeCHHHHHHHhh
Confidence 4444 4899999985443 3344445677888887778888888 56777654
No 41
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=36.40 E-value=33 Score=20.39 Aligned_cols=52 Identities=10% Similarity=0.201 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 55 SRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 55 sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
++.++...|.+.|.+.-=.+ ...|..|..|..-+| -+++.+-++...|..+|
T Consensus 4 ~~~~i~~~l~~ii~~~l~~~---~~~i~~d~~l~~dlG-~DSl~~vel~~~le~~f 55 (82)
T 2qnw_A 4 DDRPLLERVKDVVADQLGVD---RARINPESNFIKDLD-ADSLDSVELVMAFEEKF 55 (82)
T ss_dssp CSHHHHHHHHHHHHHHHCCC---GGGCCTTCBHHHHSC-CCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCC---HhhCCCccchhhccC-CcHHHHHHHHHHHHHHH
Confidence 56778888888887742122 236888888866676 58888888888777765
No 42
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=35.71 E-value=13 Score=25.62 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=29.9
Q ss_pred HHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhh
Q 048564 43 AQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTI 90 (114)
Q Consensus 43 p~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~L 90 (114)
.+||+++|++..|= .++..-.++.|+.+-+.+++++.| +.|+++
T Consensus 182 ~~lA~~lg~sr~tv----sR~l~~l~~~g~I~~~~~~i~i~d~~~L~~l 226 (227)
T 3dkw_A 182 QLVAGHLSIQPETF----SRIMHRLGDEGIIHLDGREISILDRERLECF 226 (227)
T ss_dssp HHHHHHTTSCHHHH----HHHHHHHHHHTSEEESSSCEEESCSTTTSSC
T ss_pred HHHHHHhCCCHHHH----HHHHHHHHHCCcEEecCCEEEEeCHHHHhhc
Confidence 69999999855433 333444677788877778888888 455443
No 43
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=35.63 E-value=47 Score=21.90 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=13.3
Q ss_pred HHHHHHHHHhCCCCCC
Q 048564 61 KKIWQYIRQHDLQNPA 76 (114)
Q Consensus 61 ~~lW~YIK~nnLqDp~ 76 (114)
..||.|-+.++|+-|.
T Consensus 30 ~tLrrY~r~y~L~~~~ 45 (94)
T 2ld7_A 30 NTLRRYKRHFKLPTRP 45 (94)
T ss_dssp HHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHhCCCCCC
Confidence 4799999999997554
No 44
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=35.62 E-value=22 Score=19.74 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=25.7
Q ss_pred CccCCHHHHhhhC----CCccCHHHHHH-HHHHHHHHhC
Q 048564 38 PVPVSAQLSKFLG----ANEASRSDAVK-KIWQYIRQHD 71 (114)
Q Consensus 38 ~~~lSp~La~flG----~~~~sR~eV~~-~lW~YIK~nn 71 (114)
.++|+++|.+-|. ...+|+++++. +|-+|+.+++
T Consensus 13 ~vrl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~~~ 51 (55)
T 2k9i_A 13 GVYIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDNHD 51 (55)
T ss_dssp EEEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHC
T ss_pred EEEcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhH
Confidence 4678888877774 24579999885 6788998876
No 45
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=32.78 E-value=38 Score=22.99 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=31.0
Q ss_pred HHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc-hhHHhhh
Q 048564 43 AQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD-DKLKTIF 91 (114)
Q Consensus 43 p~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD-ekLk~Lf 91 (114)
.+||+++|++..|= .++-.-.++.|+.+-+.+++++.| +.|+++-
T Consensus 173 ~~lA~~lg~sr~tv----sR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~a 218 (220)
T 3dv8_A 173 ETIANHLGSHREVI----TRMLRYFQVEGLVKLSRGKITILDSKRLETLQ 218 (220)
T ss_dssp HHHHHHHTCCHHHH----HHHHHHHHHTTSEEEETTEEEESCHHHHHHHH
T ss_pred HHHHHHhCCCHHHH----HHHHHHHHHCCCEEeCCCEEEEeCHHHHHHHh
Confidence 58999999864433 333445677888887778888888 5566553
No 46
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=30.40 E-value=29 Score=23.54 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=29.6
Q ss_pred ccCCHHHHhhhCC-----CccCHHHHHH-HHHHHHHHhCCCCCCCC
Q 048564 39 VPVSAQLSKFLGA-----NEASRSDAVK-KIWQYIRQHDLQNPANK 78 (114)
Q Consensus 39 ~~lSp~La~flG~-----~~~sR~eV~~-~lW~YIK~nnLqDp~dK 78 (114)
+.++++|.+.+.. ...||+|++. ++-+|+.++..++++..
T Consensus 6 VsLp~~ll~~lD~~v~~~~y~sRSe~Ir~air~~l~~~~~~~~~~~ 51 (133)
T 2hza_A 6 ITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGTQ 51 (133)
T ss_dssp EEECHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHTCTTCE
T ss_pred EEECHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhhccCCc
Confidence 5678888888752 3389999998 57779999877665443
No 47
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=26.16 E-value=45 Score=22.73 Aligned_cols=38 Identities=18% Similarity=0.376 Sum_probs=28.5
Q ss_pred ccCCHHHHhhhCC-----CccCHHHHHH-HHHHHHHHhCCCCCC
Q 048564 39 VPVSAQLSKFLGA-----NEASRSDAVK-KIWQYIRQHDLQNPA 76 (114)
Q Consensus 39 ~~lSp~La~flG~-----~~~sR~eV~~-~lW~YIK~nnLqDp~ 76 (114)
+.++++|.+.+.. ...||+|++. ++-+|+.++..+.++
T Consensus 8 VsLp~~l~~~ld~~v~~~~y~sRSe~Ir~air~~l~~~~~~~~~ 51 (138)
T 2bj7_A 8 ISIPSKLLEKFDQIIEEIGYENRSEAIRDLIRDFIIRHEWEVGN 51 (138)
T ss_dssp EEEEHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTSCCCS
T ss_pred EEeCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhhccc
Confidence 4677888888752 3389999998 577799998776543
No 48
>2lnh_A N-WAsp, neural wiskott-aldrich syndrome protein; protein complex, signaling protein-protein binding complex; NMR {Homo sapiens}
Probab=25.82 E-value=38 Score=20.76 Aligned_cols=33 Identities=15% Similarity=0.410 Sum_probs=23.0
Q ss_pred ccCCHHHHhhh---CCC--ccCHHHHHHHHHHHHHHhC
Q 048564 39 VPVSAQLSKFL---GAN--EASRSDAVKKIWQYIRQHD 71 (114)
Q Consensus 39 ~~lSp~La~fl---G~~--~~sR~eV~~~lW~YIK~nn 71 (114)
--|+|++..+| |++ ++..++.+..|.++|..+|
T Consensus 21 ~glp~eW~~ll~~sGIs~~~~k~~et~~~I~~F~~~~g 58 (65)
T 2lnh_A 21 NNLDPELKNLFDMCGISEAQLKDRETSKVIYDFIEKTG 58 (65)
T ss_dssp GGCCTTHHHHHHHHTCCHHHHTCTTTHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHcCCCHHHHHCHHHHHHHHHHHHHcC
Confidence 35889999998 442 2334555777888888876
No 49
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=24.57 E-value=16 Score=25.27 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccc
Q 048564 43 AQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCD 84 (114)
Q Consensus 43 p~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cD 84 (114)
.+||+++|.+..|=+.+++. .++.|+.+-..+++++.|
T Consensus 168 ~~lA~~lg~sr~tvsR~l~~----L~~~G~I~~~~~~i~I~d 205 (213)
T 1o5l_A 168 EELSRLFGCARPALSRVFQE----LEREGYIEKHGRRIKVLK 205 (213)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHH----HHHCCeEEEcCCEEEEec
Confidence 57888898866555555544 466677766666777777
No 50
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=24.19 E-value=33 Score=23.89 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=29.1
Q ss_pred ccCC-HHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccch
Q 048564 39 VPVS-AQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDD 85 (114)
Q Consensus 39 ~~lS-p~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDe 85 (114)
..+| .+||+++|++..|=+.+++. .++.|+..-..+++++.|.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~----l~~~glI~~~~~~i~I~d~ 228 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNE----LQDNGLIELHRKEILIPDA 228 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHH----HHHTTSCEEETTEEEESCG
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHH----HHHCCCEEecCCEEEEeCh
Confidence 4455 58999999865444444433 4778888777777888774
No 51
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=24.03 E-value=1.2e+02 Score=18.67 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=36.1
Q ss_pred ccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 53 EASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 53 ~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
+++..+|...|-+++.... +.+...|..|..|. -+| -+++..-+|...|+.+|
T Consensus 3 ~~t~~~l~~ii~~~l~~~~---~~~~~~i~~d~~~~-dlG-~DSL~~vel~~~le~~f 55 (95)
T 1nq4_A 3 LLTLSDLLTLLRECAGEEE---SIDLGGDVEDVAFD-ALG-YDSLALLNTVGRIERDY 55 (95)
T ss_dssp CCCHHHHHHHHHHHHTCSS---TTCSCSCCSSSCHH-HHT-CCSHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHcccc---ccccccCCCCCChh-hhC-CCHHHHHHHHHHHHHHH
Confidence 4677777776666665332 22233588888885 456 68898888888888776
No 52
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=23.67 E-value=1.2e+02 Score=20.46 Aligned_cols=47 Identities=13% Similarity=0.409 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCCCCCCCcccc----------c-hhHHhhhC---CCCcccHHHHHHHHhccc
Q 048564 63 IWQYIRQHDLQNPANKREIRC----------D-DKLKTIFN---GKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 63 lW~YIK~nnLqDp~dKr~I~c----------D-ekLk~Lfg---~~~~v~~~el~~lL~~Hl 110 (114)
||+|+.+- |.||++...|.. | +.+..+.| ++..+++..|...|..+.
T Consensus 3 LwqFLleL-L~d~~~~~~I~W~~~~geFkl~d~e~VArlWG~rKnkp~MnYeKlSRaLRyYY 63 (110)
T 1awc_A 3 LWQFLLEL-LTDKDARDCISWVGDEGEFKLNQPELVAQKWGQRKNKPTMNYEKLSRALRYYY 63 (110)
T ss_dssp HHHHHHHH-HTCTTTTTTSEECSSSSEEECSSHHHHHHHHHHHHTCTTCCHHHHHHHHHGGG
T ss_pred HHHHHHHH-hcCcccCCceEEeCCCCEEEecCHHHHHHHHHHccCCCCCCHHHHHHHHHHHH
Confidence 67777765 677776665543 2 34444554 234567777777765544
No 53
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=23.54 E-value=30 Score=27.25 Aligned_cols=12 Identities=17% Similarity=0.617 Sum_probs=10.6
Q ss_pred HHHHHHHHhCCC
Q 048564 62 KIWQYIRQHDLQ 73 (114)
Q Consensus 62 ~lW~YIK~nnLq 73 (114)
-||.||++|+|-
T Consensus 204 DVW~YI~~~~LP 215 (308)
T 3fwk_A 204 NIWSFLLYSNEP 215 (308)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHcCCC
Confidence 689999999885
No 54
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=23.42 E-value=94 Score=20.38 Aligned_cols=47 Identities=23% Similarity=0.518 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCCCCCCCccccc-----------hhHHhhhC---CCCcccHHHHHHHHhcc
Q 048564 62 KIWQYIRQHDLQNPANKREIRCD-----------DKLKTIFN---GKDSVGFLEIAKLLSQH 109 (114)
Q Consensus 62 ~lW~YIK~nnLqDp~dKr~I~cD-----------ekLk~Lfg---~~~~v~~~el~~lL~~H 109 (114)
.||+|+.+- |+||++...|..- +.+..+.| ++..+++..|...|..+
T Consensus 6 ~Lw~FL~~L-L~d~~~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk~~MnYeklSRaLRyY 66 (93)
T 1bc8_C 6 TLWQFLLQL-LQKPQNKHMICWTSNDGQFKLLQAEEVARLWGIRKNKPNMNYDKLSRALRYY 66 (93)
T ss_dssp CHHHHHHHH-TTCGGGTTTSEECSSSSEEECTTHHHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred cHHHHHHHH-hcCcccCCceEEeCCCCEEEecCHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 478888765 7777776665532 34445554 23556777776666543
No 55
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=21.98 E-value=25 Score=21.84 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=26.8
Q ss_pred CCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhc
Q 048564 73 QNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQ 108 (114)
Q Consensus 73 qDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~ 108 (114)
.||.....-..|+-+..+|| ..+-.|..|+.+=+.
T Consensus 24 VD~~~lE~yLsdedF~~vFg-ms~~eF~~LP~WKq~ 58 (67)
T 1yu8_X 24 VDPSAKENHLSDEDFKAVFG-MTRSAFANLPLWKQQ 58 (67)
T ss_dssp CCTTCGGGGSCHHHHHHHHS-SCHHHHHTSCHHHHH
T ss_pred cChHHHHhcCCHHHHHHHHC-cCHHHHHHChHHHHH
Confidence 57777888999999999998 466667666665443
No 56
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=21.91 E-value=35 Score=25.33 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=10.6
Q ss_pred HHHHHHHHhCCC
Q 048564 62 KIWQYIRQHDLQ 73 (114)
Q Consensus 62 ~lW~YIK~nnLq 73 (114)
-||+||+++||.
T Consensus 194 dV~~Yi~~~~lp 205 (261)
T 2oq2_A 194 QVKQYIDANNVP 205 (261)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHcCCC
Confidence 579999999986
No 57
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=21.83 E-value=59 Score=18.96 Aligned_cols=48 Identities=13% Similarity=0.188 Sum_probs=31.4
Q ss_pred HHHHhhhCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 43 AQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 43 p~La~flG~~~~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
+++++++|.+.. .||.+|+...+--|- . +|+.-.+...+|..+|..+.
T Consensus 14 ~eva~~lgvsrs-------tiy~~~~~g~fP~pi-----k--------lG~~~~w~~~ev~~Wl~~~~ 61 (66)
T 1z4h_A 14 KFIMADTGFGKT-------FIYDRIKSGDLPKAK-----V--------IHGRARWLYRDHCEFKNKLL 61 (66)
T ss_dssp HHHHHHHSSCHH-------HHHHHHHHHHCCCSE-----E--------SSSCEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHH-------HHHHHHHCCCCCCCE-----E--------eCCCeEEeHHHHHHHHHHHH
Confidence 689999997655 789999987765432 1 23223355677777776543
No 58
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=21.62 E-value=20 Score=27.33 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhCCCC
Q 048564 59 AVKKIWQYIRQHDLQN 74 (114)
Q Consensus 59 V~~~lW~YIK~nnLqD 74 (114)
|-..|++||++|+|..
T Consensus 240 vP~~V~~YI~~~~LY~ 255 (279)
T 1kqn_A 240 VPDLVQEYIEKHNLYS 255 (279)
T ss_dssp BCHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHcCCcC
Confidence 3457899999999985
No 59
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=21.43 E-value=21 Score=22.19 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=26.0
Q ss_pred CCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhc
Q 048564 73 QNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQ 108 (114)
Q Consensus 73 qDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~ 108 (114)
.||.....-..|+-+..||| ..+-.|..|+.+=+.
T Consensus 25 VD~~~lE~yLsdedF~~vFg-msr~eF~~LP~WKq~ 59 (68)
T 1qzp_A 25 VDRMRLERHLSAEDFSRVFA-MSPEEFGKLALWKRN 59 (68)
T ss_dssp CCGGGCGGGBCHHHHHHHSS-SCHHHHHHSCHHHHH
T ss_pred CCchHHHhhCCHHHHHHHHC-cCHHHHHHChHHHHH
Confidence 36666778899999999998 466677777665443
No 60
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=21.35 E-value=28 Score=20.34 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 57 SDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 57 ~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
.++...|.++|.+.-=.++ ..|..|..|..-+| -+++.+-++...|+.+|
T Consensus 3 ~~i~~~l~~~~~~~l~~~~---~~i~~~~~l~~~lG-~DSl~~~~l~~~le~~f 52 (79)
T 2l3v_A 3 SDTAERVKKIVVEHLGVDA---DKVTEGASFIDDLG-ADSLDTVELVMAFEEEF 52 (79)
T ss_dssp THHHHHHHHHHHHHTCCCS---TTCCTTCCHHHHTC-CCSSSSSSTTTTHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCH---hhCCCCCccccccC-CCHHHHHHHHHHHHHHH
Confidence 4677777777777532222 34777887744455 46665555555444443
No 61
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=20.98 E-value=52 Score=22.87 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=28.0
Q ss_pred ccCCHHHHhhhCC-----CccCHHHHHH-HHHHHHHHhCCCC
Q 048564 39 VPVSAQLSKFLGA-----NEASRSDAVK-KIWQYIRQHDLQN 74 (114)
Q Consensus 39 ~~lSp~La~flG~-----~~~sR~eV~~-~lW~YIK~nnLqD 74 (114)
+.|+++|.+.+.. ...||+|++. ++-+|+.++..++
T Consensus 15 VsLp~~ll~~lD~~v~~~~y~sRSe~Ir~Air~~l~~~~~~~ 56 (148)
T 2wvf_A 15 VSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAE 56 (148)
T ss_dssp EEEEHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHCSSCTT
T ss_pred EEeCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 5778888888852 3379999998 6777999987765
No 62
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=20.83 E-value=18 Score=22.48 Aligned_cols=34 Identities=6% Similarity=0.093 Sum_probs=25.1
Q ss_pred CCCCCCCccccchhHHhhhCCCCcccHHHHHHHHh
Q 048564 73 QNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLS 107 (114)
Q Consensus 73 qDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~ 107 (114)
.||.....-..|+-+..+|| -.+-.|..|+.+=+
T Consensus 24 VD~~~lE~yLsdedF~~vFg-msr~eF~~LP~WKq 57 (67)
T 2k6m_S 24 VDPLKLEIYLTDEDFEFALD-MTRDEYNALPAWKQ 57 (67)
T ss_dssp SBTTBCGGGSCHHHHHHHTS-SCHHHHTTSCHHHH
T ss_pred CCchHHHhhCCHHHHHHHHC-cCHHHHHHCcHHHH
Confidence 46677788999999999998 45566666655533
No 63
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=20.83 E-value=52 Score=21.07 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=36.6
Q ss_pred cCHHHHHHHHHHHHHHhCCCCCCCCCccccchhHHhhhCCCCcccHHHHHHHHhccc
Q 048564 54 ASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHF 110 (114)
Q Consensus 54 ~sR~eV~~~lW~YIK~nnLqDp~dKr~I~cDekLk~Lfg~~~~v~~~el~~lL~~Hl 110 (114)
+++-++...|++.|.+.==.+ ...|..|..|..-+| -|++.+-+|...|+..|
T Consensus 22 m~~mei~~~l~~iiae~l~~~---~~~I~~d~~l~~dLG-lDSL~~veLi~~lE~~f 74 (101)
T 4dxe_H 22 SNAMENFDKVKDIIVDRLGVD---ADKVTEDASFKDDLG-ADSLDIAELVMELEDEF 74 (101)
T ss_dssp --CTTHHHHHHHHHHHTTCCC---GGGCCTTCBTTTTSC-CCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHCcC---hhhCCCCCcchhhcC-CCcHHHHHHHHHHHHHH
Confidence 344578888888888753223 336888888866666 68888888888777655
No 64
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=20.77 E-value=32 Score=24.40 Aligned_cols=14 Identities=7% Similarity=0.130 Sum_probs=7.6
Q ss_pred HHHHHHHHHhCCCC
Q 048564 61 KKIWQYIRQHDLQN 74 (114)
Q Consensus 61 ~~lW~YIK~nnLqD 74 (114)
..+++||++|+|..
T Consensus 158 ~~V~~yI~~~~LY~ 171 (177)
T 3h05_A 158 PTVSELLLNEGLYR 171 (177)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHHcCCCC
Confidence 35889999999974
No 65
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=20.32 E-value=93 Score=21.34 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=21.5
Q ss_pred HHHhhhCCCc-cCHHHHHHHHHHHHHHhCCCCCCCCCcc
Q 048564 44 QLSKFLGANE-ASRSDAVKKIWQYIRQHDLQNPANKREI 81 (114)
Q Consensus 44 ~La~flG~~~-~sR~eV~~~lW~YIK~nnLqDp~dKr~I 81 (114)
++.++|+.+. .++.|++..|.+| |.+|.+-..+
T Consensus 82 ~~c~iL~l~~~g~keelv~ril~F-----L~~P~~~g~~ 115 (131)
T 2jx3_A 82 SICEVLDLERSGVNSELVKRILNF-----LMHPKPSGKP 115 (131)
T ss_dssp HHHHTTTCCSCSCHHHHHHHHHHT-----TTSCC-----
T ss_pred HHHHHHCCCCCCcHHHHHHHHHHH-----HhCccccCCc
Confidence 4556667654 8899999999988 6777764433
No 66
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=20.28 E-value=25 Score=25.12 Aligned_cols=16 Identities=25% Similarity=0.301 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhCCC
Q 048564 58 DAVKKIWQYIRQHDLQ 73 (114)
Q Consensus 58 eV~~~lW~YIK~nnLq 73 (114)
-|-..+++||++|+|.
T Consensus 197 lvP~~V~~yI~~~~LY 212 (213)
T 1k4m_A 197 LLPEPVLTYINQQGLY 212 (213)
T ss_dssp TSCHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHcCCC
Confidence 3556789999999986
No 67
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=20.21 E-value=25 Score=26.11 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 048564 59 AVKKIWQYIRQHDLQNPA 76 (114)
Q Consensus 59 V~~~lW~YIK~nnLqDp~ 76 (114)
|-..|++||++|+|....
T Consensus 219 vP~~V~~yI~~~~LY~~~ 236 (252)
T 1nup_A 219 IPDAVITYIKDHGLYTKG 236 (252)
T ss_dssp BCHHHHHHHHHTTCSCC-
T ss_pred CCHHHHHHHHHcCCcCCC
Confidence 345789999999998643
No 68
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=20.18 E-value=66 Score=20.83 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=26.1
Q ss_pred CCHHHHhhhCCC--ccCHHHHHH---HHHHHHHHhCCC
Q 048564 41 VSAQLSKFLGAN--EASRSDAVK---KIWQYIRQHDLQ 73 (114)
Q Consensus 41 lSp~La~flG~~--~~sR~eV~~---~lW~YIK~nnLq 73 (114)
=.|+..+|+... ++|+..|-. .|.+||.+.+-.
T Consensus 30 ~dP~V~~Fl~~h~~~l~~~~I~~s~~kL~ey~~e~~~c 67 (106)
T 2k7r_A 30 KDQDVQAFLKENEEVIDQKMIEKSLNKLYEYIEQSKNC 67 (106)
T ss_dssp TCHHHHHHHHHSTTTCCHHHHHHTHHHHHHHHHSCSSC
T ss_pred cCHHHHHHHHHChhhCCHHHHHhhHHHHHHHHHHHHhh
Confidence 357888999765 899999855 788999987644
No 69
>1ej5_A WAsp, wiskott-aldrich syndrome protein; alpha helix, beta-hairpin turn, blood clotting; NMR {Homo sapiens} SCOP: a.68.1.1 PDB: 1t84_A* 2k42_A
Probab=20.02 E-value=79 Score=21.16 Aligned_cols=36 Identities=14% Similarity=0.354 Sum_probs=27.8
Q ss_pred cCCHHHHhhh---CC--CccCHHHHHHHHHHHHHHhCCCCC
Q 048564 40 PVSAQLSKFL---GA--NEASRSDAVKKIWQYIRQHDLQNP 75 (114)
Q Consensus 40 ~lSp~La~fl---G~--~~~sR~eV~~~lW~YIK~nnLqDp 75 (114)
-+.|++..|| |+ .++...+..+.|.+||..++-++|
T Consensus 21 glppeWk~LL~~aGITe~elkdn~t~~fI~dfie~~~gle~ 61 (107)
T 1ej5_A 21 NLDPDLRSLFSRAGISEAQLTDAETSKLIYDFIEDQGGLEA 61 (107)
T ss_dssp TCCHHHHHHHHHTTCCHHHHSCHHHHHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHcCHHHHHHHHHHHHccccch
Confidence 5889999998 44 356666778999999999986544
Done!