BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048566
(760 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 323 CPNLEFLCISLKDSSLEIN----IPGNFFIGMKKLRVLDFTRM---QFSSFPSSIDL--L 373
C +F ISLK L N + NF +G+++L LDF Q S F + L L
Sbjct: 389 CSQSDFGTISLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447
Query: 374 VNL---HTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQ--LPEELGQLNKLRLLDLTN 428
+ L HT + + I L +LEVL + + LP+ +L L LDL+
Sbjct: 448 IYLDISHT----HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 429 CFHLKVIAPNLISSLTRLEELYMGN 453
C L+ ++P +SL+ L+ L M +
Sbjct: 504 C-QLEQLSPTAFNSLSSLQVLNMSH 527
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 3 GIGKTTLVKKVARQA--MEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSR 60
G+GK+ L+ + R +E K V F+ S D K I+ +I + GLE + S+
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 98
Query: 61 ASRIFERLRNEKKILVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTARDRKEAWRLFKMM 120
R L+V D I KHL E V + L RD ++ + M+
Sbjct: 99 -------YRGAVGALLVYD-IAKHLTYENVE----------RWLKELRDHADS-NIVIML 139
Query: 121 VGDDVENRELKSTAIDVARA 140
VG+ + R L++ D ARA
Sbjct: 140 VGNKSDLRHLRAVPTDEARA 159
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 21/140 (15%)
Query: 3 GIGKTTLVKKVARQA--MEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSR 60
G+GK+ L+ + R +E K V F+ S D K I+ +I + GLE + S+
Sbjct: 18 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAY 77
Query: 61 ASRIFERLRNEKKILVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTARDRKEAWRLFKMM 120
R L+V D I KHL E V + L RD ++ + M+
Sbjct: 78 -------YRGAVGALLVYD-IAKHLTYENVE----------RWLKELRDHADS-NIVIML 118
Query: 121 VGDDVENRELKSTAIDVARA 140
VG+ + R L++ D ARA
Sbjct: 119 VGNKSDLRHLRAVPTDEARA 138
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 342 IPGNFFIGMKKLRVLDFTRMQFSSFPS-SIDLLVNLHTLCLDQ----SALGDIAIIGKLK 396
IP F+ + KL+ L S PS + + + +L L L + S + + A G L
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-LS 185
Query: 397 NLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYM 451
NL L+ M ++ ++P L L KL LDL+ HL I P L L++L+M
Sbjct: 186 NLRYLNLAMCNLREIPN-LTPLIKLDELDLSG-NHLSAIRPGSFQGLMHLQKLWM 238
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 323 CPNLEFLCISLKDSSLEIN---IPGNFFIGMKKLRVLDFTRM---QFSSFPSSIDL--LV 374
C +F SLK L N + F+G+++L LDF Q S F + L L+
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 375 NL---HTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQ--LPEELGQLNKLRLLDLTNC 429
L HT + + I L +LEVL + + LP+ +L L LDL+ C
Sbjct: 425 YLDISHT----HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 430 FHLKVIAPNLISSLTRLEELYMGN 453
L+ ++P +SL+ L+ L M +
Sbjct: 481 -QLEQLSPTAFNSLSSLQVLNMAS 503
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 323 CPNLEFLCISLKDSSLEIN---IPGNFFIGMKKLRVLDFTRM---QFSSFPSSIDL--LV 374
C +F SLK L N + F+G+++L LDF Q S F + L L+
Sbjct: 70 CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129
Query: 375 NL---HTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQ--LPEELGQLNKLRLLDLTNC 429
L HT + + I L +LEVL + + LP+ +L L LDL+ C
Sbjct: 130 YLDISHT----HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Query: 430 FHLKVIAPNLISSLTRLEELYMGN 453
L+ ++P +SL+ L+ L M +
Sbjct: 186 -QLEQLSPTAFNSLSSLQVLNMSH 208
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 20/145 (13%)
Query: 323 CPNLEFLCISLKDSSLEIN----IPGNFFIGMKKLRVLDFTRM---QFSSFPSSIDL--L 373
C +F SLK L N + NF +G+++L LDF Q S F + L L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 374 VNL---HTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQ--LPEELGQLNKLRLLDLTN 428
+ L HT + + I L +LEVL + + LP+ +L L LDL+
Sbjct: 424 IYLDISHT----HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 429 CFHLKVIAPNLISSLTRLEELYMGN 453
C L+ ++P +SL+ L+ L M +
Sbjct: 480 C-QLEQLSPTAFNSLSSLQVLNMSH 503
>pdb|3HP7|A Chain A, Putative Hemolysin From Streptococcus Thermophilus
Length = 291
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 272 DVAISIGCRDQHGILVG-NEDVWDWRNEDALRKCKAITLRYDSNRHFPEGLECPNLEFLC 330
DV + G + + + VG N+ VW R +D +R + RY F EGL F
Sbjct: 101 DVXLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSXEQYNFRYAEPVDFTEGLPS----FAS 156
Query: 331 ISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSS 365
I + SL + +P I + +V+ + QF +
Sbjct: 157 IDVSFISLNLILPALAKILVDGGQVVALVKPQFEA 191
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 21/140 (15%)
Query: 3 GIGKTTLVKKVARQA--MEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSR 60
G+GK+ L+ + R +E K V F+ S D K I+ +I + G E + S+
Sbjct: 30 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 89
Query: 61 ASRIFERLRNEKKILVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTARDRKEAWRLFKMM 120
R L+V D I KHL E V + L RD ++ + M+
Sbjct: 90 -------YRGAVGALLVYD-IAKHLTYENVE----------RWLKELRDHADS-NIVIML 130
Query: 121 VGDDVENRELKSTAIDVARA 140
VG+ + R L++ D ARA
Sbjct: 131 VGNKSDLRHLRAVPTDEARA 150
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 21/140 (15%)
Query: 3 GIGKTTLVKKVARQA--MEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSR 60
G+GK+ L+ + R +E K V F+ S D K I+ +I + G E + S+
Sbjct: 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 98
Query: 61 ASRIFERLRNEKKILVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTARDRKEAWRLFKMM 120
R L+V D I KHL E V + L RD ++ + M+
Sbjct: 99 -------YRGAVGALLVYD-IAKHLTYENVE----------RWLKELRDHADS-NIVIML 139
Query: 121 VGDDVENRELKSTAIDVARA 140
VG+ + R L++ D ARA
Sbjct: 140 VGNKSDLRHLRAVPTDEARA 159
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 21/140 (15%)
Query: 3 GIGKTTLVKKVARQA--MEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSR 60
G+GK+ L+ + R +E K V F+ S D K I+ +I + G E + S+
Sbjct: 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAY 74
Query: 61 ASRIFERLRNEKKILVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTARDRKEAWRLFKMM 120
R L+V D I KHL E V + L RD ++ + M+
Sbjct: 75 -------YRGAVGALLVYD-IAKHLTYENVE----------RWLKELRDHADS-NIVIML 115
Query: 121 VGDDVENRELKSTAIDVARA 140
VG+ + R L++ D ARA
Sbjct: 116 VGNKSDLRHLRAVPTDEARA 135
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 373 LVNLHTLCLDQSALGDI-AIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFH 431
LVNL +L L+ + + + A I L+NL+ L S + L + L KL LDL C
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241
Query: 432 LKVIAPNLISSLTRLEELYMGNC 454
L+ P + L+ L + +C
Sbjct: 242 LRNYPP-IFGGRAPLKRLILKDC 263
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 20/142 (14%)
Query: 376 LHTLCLDQSALGDIAIIGK-LKNLEVLSFLMSDIMQLP----EELGQLNKLRLLDLTNCF 430
L TL L + L + ++G+ L L VL + + LP LG+L +L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----KGN 134
Query: 431 HLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKN 490
LK + P L++ +LE+L + AN++ + L L L TL + +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSL-----------ANNQLTELPAGLLNGLENLDTLLLQENS 183
Query: 491 DSILPEGFLARKLERFKISIGN 512
+P+GF L F GN
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 20/142 (14%)
Query: 376 LHTLCLDQSALGDIAIIGK-LKNLEVLSFLMSDIMQLP----EELGQLNKLRLLDLTNCF 430
L TL L + L + ++G+ L L VL + + LP LG+L +L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----KGN 134
Query: 431 HLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKN 490
LK + P L++ +LE+L + AN++ + L L L TL + +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSL-----------ANNQLTELPAGLLNGLENLDTLLLQENS 183
Query: 491 DSILPEGFLARKLERFKISIGN 512
+P+GF L F GN
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 20/142 (14%)
Query: 376 LHTLCLDQSALGDIAIIGK-LKNLEVLSFLMSDIMQLP----EELGQLNKLRLLDLTNCF 430
L TL L + L + ++G+ L L VL + + LP LG+L +L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----KGN 134
Query: 431 HLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKN 490
LK + P L++ +LE+L + AN++ + L L L TL + +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSL-----------ANNQLTELPAGLLNGLENLDTLLLQENS 183
Query: 491 DSILPEGFLARKLERFKISIGN 512
+P+GF L F GN
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 20/142 (14%)
Query: 376 LHTLCLDQSALGDIAIIGK-LKNLEVLSFLMSDIMQLP----EELGQLNKLRLLDLTNCF 430
L TL L + L + ++G+ L L VL + + LP LG+L +L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----KGN 134
Query: 431 HLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKN 490
LK + P L++ +LE+L + AN++ + L L L TL + +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSL-----------ANNQLTELPAGLLNGLENLDTLLLQENS 183
Query: 491 DSILPEGFLARKLERFKISIGN 512
+P+GF L F GN
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 20/142 (14%)
Query: 376 LHTLCLDQSALGDIAIIGK-LKNLEVLSFLMSDIMQLP----EELGQLNKLRLLDLTNCF 430
L TL L + L + ++G+ L L VL + + LP LG+L +L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----KGN 134
Query: 431 HLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKN 490
LK + P L++ +LE+L + AN+ + L L L TL + +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSL-----------ANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 491 DSILPEGFLARKLERFKISIGN 512
+P+GF L F GN
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
>pdb|3OAH|A Chain A, Structural Characterization Of The Dual Glycan Binding
Adeno- Associated Virus Serotype 6
Length = 534
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 29/159 (18%)
Query: 372 LLVNLHTLCLDQSALGDIAIIGKLKNL---EVLSFLMSDI-MQLPEELGQLNKLRLLDLT 427
+ VNL + D A GD+ ++G L + + +L I ++P G + L+
Sbjct: 378 VAVNLQSSSTD-PATGDVHVMGALPGMVWQDRDVYLQGPIWAKIPHTDGHFHPSPLM--- 433
Query: 428 NCFHLKVIAPNLI-------------SSLTR----LEELYMGNCF--IEWEVERANSKRS 468
F LK P ++ S T+ + + G IEWE+++ NSKR
Sbjct: 434 GGFGLKHPPPQILIKNTPVPANPPAEFSATKFASFITQYSTGQVSVEIEWELQKENSKRW 493
Query: 469 NASLDELMHLPRLTTLEIDVKNDSIL--PEGFLARKLER 505
N + + + ++ V N+ + P R L R
Sbjct: 494 NPEVQYTSNYAKSANVDFTVDNNGLYTEPRPIGTRYLTR 532
>pdb|1VU0|U Chain U, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|V Chain V, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|W Chain W, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|X Chain X, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|Y Chain Y, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|Z Chain Z, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|AA Chain a, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|BB Chain b, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|CC Chain c, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|DD Chain d, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|EE Chain e, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|FF Chain f, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|GG Chain g, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|HH Chain h, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|II Chain i, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|JJ Chain j, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|KK Chain k, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|LL Chain l, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|MM Chain m, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU0|NN Chain n, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|OO Chain o, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|PP Chain p, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|QQ Chain q, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|RR Chain r, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|SS Chain s, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|TT Chain t, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|UU Chain u, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|VV Chain v, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|WW Chain w, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|XX Chain x, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|YY Chain y, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|ZZ Chain z, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|0 Chain 0, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|1 Chain 1, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|2 Chain 2, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|3 Chain 3, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|4 Chain 4, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|5 Chain 5, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|6 Chain 6, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|1VU1|7 Chain 7, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|A Chain A, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|B Chain B, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|C Chain C, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|D Chain D, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|E Chain E, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|F Chain F, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|G Chain G, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|H Chain H, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|I Chain I, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|J Chain J, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|K Chain K, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|L Chain L, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|M Chain M, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|N Chain N, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|O Chain O, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|P Chain P, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|Q Chain Q, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|R Chain R, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|S Chain S, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3TSX|T Chain T, Structure-Function Analysis Of Receptor-Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
Length = 520
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 29/159 (18%)
Query: 372 LLVNLHTLCLDQSALGDIAIIGKLKNL---EVLSFLMSDI-MQLPEELGQLNKLRLLDLT 427
+ VNL + D A GD+ ++G L + + +L I ++P G + L+
Sbjct: 364 VAVNLQSSSTD-PATGDVHVMGALPGMVWQDRDVYLQGPIWAKIPHTDGHFHPSPLM--- 419
Query: 428 NCFHLKVIAPNLI-------------SSLTR----LEELYMGNCF--IEWEVERANSKRS 468
F LK P ++ S T+ + + G IEWE+++ NSKR
Sbjct: 420 GGFGLKHPPPQILIKNTPVPANPPAEFSATKFASFITQYSTGQVSVEIEWELQKENSKRW 479
Query: 469 NASLDELMHLPRLTTLEIDVKNDSIL--PEGFLARKLER 505
N + + + ++ V N+ + P R L R
Sbjct: 480 NPEVQYTSNYAKSANVDFTVDNNGLYTEPRPIGTRYLTR 518
>pdb|3SHM|A Chain A, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|B Chain B, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|C Chain C, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|D Chain D, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|E Chain E, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|F Chain F, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|G Chain G, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|H Chain H, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|I Chain I, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|J Chain J, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|K Chain K, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|L Chain L, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|M Chain M, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|N Chain N, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|O Chain O, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|P Chain P, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|Q Chain Q, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|R Chain R, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|S Chain S, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
pdb|3SHM|T Chain T, Structure-Function Analysis Of Receptor Binding In
Adeno-Associated Virus Serotype 6 (Aav-6)
Length = 516
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 29/159 (18%)
Query: 372 LLVNLHTLCLDQSALGDIAIIGKLKNL---EVLSFLMSDI-MQLPEELGQLNKLRLLDLT 427
+ VNL + D A GD+ ++G L + + +L I ++P G + L+
Sbjct: 360 VAVNLQSSSTD-PATGDVHVMGALPGMVWQDRDVYLQGPIWAKIPHTDGHFHPSPLM--- 415
Query: 428 NCFHLKVIAPNLI-------------SSLTR----LEELYMGNCF--IEWEVERANSKRS 468
F LK P ++ S T+ + + G IEWE+++ NSKR
Sbjct: 416 GGFGLKHPPPQILIKNTPVPANPPAEFSATKFASFITQYSTGQVSVEIEWELQKENSKRW 475
Query: 469 NASLDELMHLPRLTTLEIDVKNDSIL--PEGFLARKLER 505
N + + + ++ V N+ + P R L R
Sbjct: 476 NPEVQYTSNYAKSANVDFTVDNNGLYTEPRPIGTRYLTR 514
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 20/142 (14%)
Query: 376 LHTLCLDQSALGDIAIIGK-LKNLEVLSFLMSDIMQLP----EELGQLNKLRLLDLTNCF 430
L TL L + L + ++G+ L L VL + + LP LG+L +L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----KGN 134
Query: 431 HLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKN 490
LK + P L++ +LE+L + AN+ + L L L TL + +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSL-----------ANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 491 DSILPEGFLARKLERFKISIGN 512
+P+GF L F GN
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 20/142 (14%)
Query: 376 LHTLCLDQSALGDIAIIGK-LKNLEVLSFLMSDIMQLP----EELGQLNKLRLLDLTNCF 430
L TL L + L + ++G+ L L VL + + LP LG+L +L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----KGN 134
Query: 431 HLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKN 490
LK + P L++ +LE+L + AN+ + L L L TL + +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSL-----------ANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 491 DSILPEGFLARKLERFKISIGN 512
+P+GF L F GN
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 20/142 (14%)
Query: 376 LHTLCLDQSALGDIAIIGK-LKNLEVLSFLMSDIMQLP----EELGQLNKLRLLDLTNCF 430
L TL L + L + ++G+ L L VL + + LP LG+L +L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----KGN 134
Query: 431 HLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKN 490
LK + P L++ +LE+L + AN+ + L L L TL + +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSL-----------ANNNLTELPAGLLNGLENLDTLLLQENS 183
Query: 491 DSILPEGFLARKLERFKISIGN 512
+P+GF L F GN
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 20/142 (14%)
Query: 376 LHTLCLDQSALGDIAIIGK-LKNLEVLSFLMSDIMQLP----EELGQLNKLRLLDLTNCF 430
L TL L + L + ++G+ L L VL + + LP LG+L +L L
Sbjct: 80 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----KGN 135
Query: 431 HLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKN 490
LK + P L++ +LE+L + AN+ + L L L TL + +
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSL-----------ANNNLTELPAGLLNGLENLDTLLLQENS 184
Query: 491 DSILPEGFLARKLERFKISIGN 512
+P+GF L F GN
Sbjct: 185 LYTIPKGFFGSHLLPFAFLHGN 206
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 20/142 (14%)
Query: 376 LHTLCLDQSALGDIAIIGK-LKNLEVLSFLMSDIMQLP----EELGQLNKLRLLDLTNCF 430
L TL L + L + ++G+ L L VL + + LP LG+L +L L
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL----KGN 134
Query: 431 HLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKN 490
LK + P L++ +LE+L + AN+ + L L L TL + +
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSL-----------ANNDLTELPAGLLNGLENLDTLLLQENS 183
Query: 491 DSILPEGFLARKLERFKISIGN 512
+P+GF L F GN
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205
>pdb|2FEP|A Chain A, Structure Of Truncated Ccpa In Complex With P-Ser-Hpr And
Sulfate Ions
Length = 289
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 13/84 (15%)
Query: 126 ENRELKSTAIDVARAC----------GGLPIALTTVAMAL---RSKSLHGWKVSLGELRT 172
E E S AID +A G IA + MA RSK L G+K +L E
Sbjct: 106 EQEETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANL 165
Query: 173 PSMDNFEGVSAETYSSIELSFNHL 196
P + F TY S + HL
Sbjct: 166 PFNEQFVAEGDYTYDSGLEALQHL 189
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 392 IGKLKNLEVLSFLMSDIM-QLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELY 450
IG + L +L+ +DI +P+E+G L L +LDL++ L P +S+LT L E+
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEID 707
Query: 451 MGN 453
+ N
Sbjct: 708 LSN 710
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 392 IGKLKNLEVLSFLMSDIM-QLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELY 450
IG + L +L+ +DI +P+E+G L L +LDL++ L P +S+LT L E+
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDGRIPQAMSALTMLTEID 710
Query: 451 MGN 453
+ N
Sbjct: 711 LSN 713
>pdb|2QA0|A Chain A, Structure Of Adeno-Associated Virus Serotype 8
pdb|3RA2|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
pdb|3RA4|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
pdb|3RA8|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
pdb|3RA9|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
pdb|3RAA|A Chain A, Structural Studies Of Aav8 Capsid Transitions Associated
With Endosomal Trafficking
Length = 519
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 456 IEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSIL--PEGFLARKLER 505
IEWE+++ NSKR N + + + T+++ V + + P R L R
Sbjct: 466 IEWELQKENSKRWNPEIQYTSNYYKSTSVDFAVNTEGVYSEPRPIGTRYLTR 517
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 373 LVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHL 432
L NL+ L L + + DI+ + L +L+ LSF + + L + L L L LD+++
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDL-KPLANLTTLERLDISSN--- 183
Query: 433 KVIAPNLISSLTRLEELYMGNCFIE 457
KV ++++ LT LE L N I
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQIS 208
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 36/148 (24%)
Query: 349 GMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDI 408
G+ KL L Q S+ S + L L L L+++ L DI+ I LKNL L+ ++I
Sbjct: 259 GLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 317
Query: 409 MQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRS 468
I+P +SSLT+L+ L+ N + AN
Sbjct: 318 SD------------------------ISP--VSSLTKLQRLFFSNNKVSDVSSLANLTNI 351
Query: 469 N---------ASLDELMHLPRLTTLEID 487
N + L L +L R+T L ++
Sbjct: 352 NWLSAGHNQISDLTPLANLTRITQLGLN 379
>pdb|3OQM|A Chain A, Structure Of Ccpa-Hpr-Ser46p-Acka2 Complex
pdb|3OQM|C Chain C, Structure Of Ccpa-Hpr-Ser46p-Acka2 Complex
pdb|3OQN|A Chain A, Structure Of Ccpa-Hpr-Ser46-P-Gntr-Down Cre
pdb|3OQN|C Chain C, Structure Of Ccpa-Hpr-Ser46-P-Gntr-Down Cre
Length = 339
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 126 ENRELKSTAIDVARAC----------GGLPIALTTVAMAL---RSKSLHGWKVSLGELRT 172
E E S AID +A G IA + MA RSK L G+K +L E
Sbjct: 150 EQEETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANL 209
Query: 173 PSMDNFEGVSAETYSSIELSFNHLKDEQLKKIFLLCSQME 212
P + F TY S + HL K +L + E
Sbjct: 210 PFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILSATDE 249
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 31/144 (21%)
Query: 68 LRNEKKILVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTARD------------------ 109
LR + L++LD++W L+ C++LLT RD
Sbjct: 232 LRKHPRSLLILDDVWDSWVLKAFD-------SQCQILLTTRDKSVTDSVMGPKYVVPVES 284
Query: 110 ---RKEAWRLFKMMVGDDVENRELKSTAIDVARACGGLPIALTTVAMALRSKSLHGWKVS 166
+++ + + V +++ +L A + + C G P+ ++ + LR + W+
Sbjct: 285 SLGKEKGLEILSLFV--NMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYY 341
Query: 167 LGELRTPSMDNFEGVSAETYSSIE 190
L +L+ S+ Y +++
Sbjct: 342 LKQLQNKQFKRIRKSSSYDYEALD 365
>pdb|3OQO|A Chain A, Ccpa-Hpr-Ser46p-Syn Cre
pdb|3OQO|C Chain C, Ccpa-Hpr-Ser46p-Syn Cre
Length = 339
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 13/100 (13%)
Query: 126 ENRELKSTAIDVARAC----------GGLPIALTTVAMAL---RSKSLHGWKVSLGELRT 172
E E S AID +A G IA + MA RSK L G+K +L E
Sbjct: 150 EQEETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANL 209
Query: 173 PSMDNFEGVSAETYSSIELSFNHLKDEQLKKIFLLCSQME 212
P + F TY S + HL K +L + E
Sbjct: 210 PFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILSATDE 249
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 373 LVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHL 432
L NL+ L L + + DI+ + L +L+ LSF + + L + L L L LD+++
Sbjct: 128 LTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDL-KPLANLTTLERLDISSN--- 183
Query: 433 KVIAPNLISSLTRLEELYMGNCFIE 457
KV ++++ LT LE L N I
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQIS 208
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 36/148 (24%)
Query: 349 GMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDI 408
G+ KL L Q S+ S + L L L L+++ L DI+ I LKNL L+ ++I
Sbjct: 262 GLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 320
Query: 409 MQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRS 468
I+P +SSLT+L+ L+ N + AN
Sbjct: 321 SD------------------------ISP--VSSLTKLQRLFFANNKVSDVSSLANLTNI 354
Query: 469 N---------ASLDELMHLPRLTTLEID 487
N + L L +L R+T L ++
Sbjct: 355 NWLSAGHNQISDLTPLANLTRITQLGLN 382
>pdb|3J1Q|A Chain A, Structure Of Aav-Dj, A Retargeted Gene Therapy Vector:
Cryo-Electron Microscopy At 4.5a Resolution
Length = 737
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 456 IEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPE 496
IEWE+++ NSKR N + + + T+++ V + + E
Sbjct: 684 IEWELQKENSKRWNPEIQYTSNYYKSTSVDFAVNTEGVYSE 724
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 60/148 (40%), Gaps = 36/148 (24%)
Query: 349 GMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDI 408
G+ KL L Q S+ S + L L L L+++ L DI+ I LKNL L+ ++I
Sbjct: 258 GLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 316
Query: 409 MQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRS 468
I+P +SSLT+L+ L+ N + AN
Sbjct: 317 SD------------------------ISP--VSSLTKLQRLFFSNNKVSDVSSLANLTNI 350
Query: 469 N---------ASLDELMHLPRLTTLEID 487
N + L L +L R+T L ++
Sbjct: 351 NWLSAGHNQISDLTPLANLTRITQLGLN 378
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/175 (19%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 39 RIQQE--IAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNIWKHLDLETVGIPFGE 96
R+ QE +++L L + E + R LR + L++LD++W L+
Sbjct: 205 RLDQEESFSQRLPLNIEEAKDRLRVLM----LRKHPRSLLILDDVWDPWVLKAFD----- 255
Query: 97 DHKGCKLLLTARD---------------------RKEAWRLFKMMVGDDVENRELKSTAI 135
C++LLT RD R++ + + V +++ +L + A
Sbjct: 256 --NQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV--NMKKEDLPAEAH 311
Query: 136 DVARACGGLPIALTTVAMALRSKSLHGWKVSLGELRTPSMDNFEGVSAETYSSIE 190
+ + C G P+ ++ + LR + W L +L+ S+ Y +++
Sbjct: 312 SIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALD 365
>pdb|3NG9|A Chain A, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|B Chain B, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|C Chain C, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|D Chain D, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|E Chain E, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|F Chain F, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|G Chain G, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|H Chain H, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|I Chain I, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
pdb|3NG9|J Chain J, Structure To Function Correlations For Adeno-Associated
Virus Serotype 1
Length = 736
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 29/159 (18%)
Query: 372 LLVNLHTLCLDQSALGDIAIIGKLKNL---EVLSFLMSDI-MQLPEELGQLNKLRLLDLT 427
+ VN + D A GD+ +G L + + +L I ++P G + L+
Sbjct: 580 VAVNFQSSSTD-PATGDVHAMGALPGMVWQDRDVYLQGPIWAKIPHTDGHFHPSPLM--- 635
Query: 428 NCFHLKVIAPNLISSLTRLE-----------------ELYMGNCF--IEWEVERANSKRS 468
F LK P ++ T + + G IEWE+++ NSKR
Sbjct: 636 GGFGLKNPPPQILIKNTPVPANPPAEFSATKFASFITQYSTGQVSVEIEWELQKENSKRW 695
Query: 469 NASLDELMHLPRLTTLEIDVKNDSIL--PEGFLARKLER 505
N + + + ++ V N+ + P R L R
Sbjct: 696 NPEVQYTSNYAKSANVDFTVDNNGLYTEPRPIGTRYLTR 734
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,671,805
Number of Sequences: 62578
Number of extensions: 826667
Number of successful extensions: 1940
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1898
Number of HSP's gapped (non-prelim): 92
length of query: 760
length of database: 14,973,337
effective HSP length: 106
effective length of query: 654
effective length of database: 8,340,069
effective search space: 5454405126
effective search space used: 5454405126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)