Query 048566
Match_columns 760
No_of_seqs 395 out of 3784
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 10:43:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048566.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048566hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.5E-73 3.2E-78 645.4 35.6 616 1-721 187-847 (889)
2 PLN03210 Resistant to P. syrin 100.0 8E-61 1.7E-65 573.4 47.0 634 1-721 215-911 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.1E-37 2.4E-42 321.3 13.4 230 1-233 27-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 6.7E-22 1.4E-26 238.6 21.5 129 322-456 116-248 (968)
5 PLN00113 leucine-rich repeat r 99.9 7.4E-22 1.6E-26 238.1 20.5 197 301-512 163-367 (968)
6 PLN03210 Resistant to P. syrin 99.9 1.9E-21 4.2E-26 234.2 20.2 371 301-717 557-944 (1153)
7 KOG0444 Cytoskeletal regulator 99.8 2.5E-22 5.4E-27 206.3 -4.0 203 301-516 54-260 (1255)
8 KOG4194 Membrane glycoprotein 99.8 5.7E-20 1.2E-24 188.1 5.0 319 322-681 100-427 (873)
9 KOG4194 Membrane glycoprotein 99.8 2.3E-19 5E-24 183.7 5.4 351 323-725 77-437 (873)
10 KOG0444 Cytoskeletal regulator 99.7 9.3E-20 2E-24 187.6 -3.2 341 323-719 6-378 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 9E-19 1.9E-23 171.8 -8.2 213 304-550 70-286 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 1.3E-17 2.8E-22 163.8 -3.3 199 301-518 90-292 (565)
13 KOG0618 Serine/threonine phosp 99.6 3.4E-17 7.4E-22 177.1 -3.1 362 304-716 47-489 (1081)
14 KOG0618 Serine/threonine phosp 99.5 3.5E-16 7.6E-21 169.3 -2.2 347 325-719 46-467 (1081)
15 KOG0617 Ras suppressor protein 99.5 1.8E-16 3.8E-21 137.7 -4.7 165 315-497 24-191 (264)
16 PRK15387 E3 ubiquitin-protein 99.5 3.8E-13 8.3E-18 150.8 12.8 254 326-681 203-456 (788)
17 PRK15387 E3 ubiquitin-protein 99.4 1E-12 2.2E-17 147.5 14.5 170 307-514 206-375 (788)
18 KOG0617 Ras suppressor protein 99.4 7.6E-15 1.7E-19 127.6 -4.4 159 349-519 31-191 (264)
19 PRK15370 E3 ubiquitin-protein 99.3 7.5E-12 1.6E-16 141.5 11.5 94 353-456 180-274 (754)
20 KOG4658 Apoptotic ATPase [Sign 99.3 1.2E-12 2.7E-17 150.1 5.3 120 612-734 712-837 (889)
21 PRK15370 E3 ubiquitin-protein 99.3 1.5E-11 3.2E-16 139.1 10.8 116 325-456 200-316 (754)
22 PRK04841 transcriptional regul 99.2 2.5E-09 5.4E-14 129.0 23.3 244 1-278 40-332 (903)
23 KOG4237 Extracellular matrix p 99.0 1.2E-10 2.5E-15 115.3 1.0 126 326-455 69-199 (498)
24 COG2909 MalT ATP-dependent tra 99.0 1.8E-08 3.8E-13 110.3 17.6 245 2-280 46-340 (894)
25 PF14580 LRR_9: Leucine-rich r 99.0 5.9E-10 1.3E-14 102.5 4.9 131 348-488 16-149 (175)
26 cd00116 LRR_RI Leucine-rich re 98.9 2.6E-10 5.7E-15 119.6 1.2 137 345-489 17-175 (319)
27 PF14580 LRR_9: Leucine-rich r 98.8 2.2E-09 4.7E-14 98.8 3.6 133 363-508 9-147 (175)
28 KOG0532 Leucine-rich repeat (L 98.8 2.3E-10 5E-15 118.5 -3.3 137 348-500 118-255 (722)
29 KOG1259 Nischarin, modulator o 98.7 1.7E-09 3.8E-14 103.1 0.4 134 350-496 283-416 (490)
30 KOG4341 F-box protein containi 98.7 5.6E-10 1.2E-14 111.5 -3.2 83 352-434 139-231 (483)
31 KOG4237 Extracellular matrix p 98.7 1.7E-09 3.6E-14 107.3 -0.4 267 285-572 51-356 (498)
32 KOG0532 Leucine-rich repeat (L 98.7 8.1E-10 1.8E-14 114.5 -3.3 170 327-516 78-249 (722)
33 TIGR03015 pepcterm_ATPase puta 98.7 9.9E-07 2.1E-11 89.8 18.6 152 1-155 51-242 (269)
34 PRK00411 cdc6 cell division co 98.5 7.7E-06 1.7E-10 88.3 21.1 84 1-84 63-150 (394)
35 cd00116 LRR_RI Leucine-rich re 98.5 6.8E-08 1.5E-12 101.3 4.9 158 346-512 76-261 (319)
36 KOG4341 F-box protein containi 98.5 2.5E-09 5.4E-14 107.0 -6.9 295 374-728 138-451 (483)
37 KOG3207 Beta-tubulin folding c 98.5 3.3E-08 7.2E-13 99.7 0.9 153 301-456 120-283 (505)
38 KOG3207 Beta-tubulin folding c 98.5 6.2E-08 1.3E-12 97.8 2.7 141 366-517 113-262 (505)
39 COG4886 Leucine-rich repeat (L 98.5 1.2E-07 2.6E-12 102.4 5.2 174 322-513 114-289 (394)
40 COG3903 Predicted ATPase [Gene 98.4 3E-07 6.5E-12 93.3 6.6 264 1-279 22-315 (414)
41 KOG1259 Nischarin, modulator o 98.4 3.4E-08 7.3E-13 94.5 -0.4 128 323-457 283-412 (490)
42 PF05729 NACHT: NACHT domain 98.4 1.1E-06 2.5E-11 82.0 9.6 104 2-110 9-130 (166)
43 COG4886 Leucine-rich repeat (L 98.3 6.1E-07 1.3E-11 97.0 6.2 176 302-496 116-294 (394)
44 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.7E-11 65.8 3.3 58 397-455 2-60 (61)
45 cd01128 rho_factor Transcripti 98.2 4E-06 8.6E-11 82.5 7.5 83 1-84 24-115 (249)
46 PF13401 AAA_22: AAA domain; P 98.2 4.4E-06 9.6E-11 74.5 7.2 105 2-108 13-124 (131)
47 PLN03150 hypothetical protein; 98.2 3.8E-06 8.2E-11 95.3 8.3 102 353-455 420-526 (623)
48 PLN03150 hypothetical protein; 98.1 4.8E-06 1E-10 94.4 8.3 108 325-435 419-531 (623)
49 PF13855 LRR_8: Leucine rich r 98.1 2.1E-06 4.5E-11 64.7 3.4 13 353-365 3-15 (61)
50 TIGR02928 orc1/cdc6 family rep 98.1 0.00034 7.5E-09 74.7 21.8 84 1-84 48-141 (365)
51 PRK09376 rho transcription ter 98.1 7.7E-06 1.7E-10 83.8 8.0 83 1-84 177-268 (416)
52 KOG2120 SCF ubiquitin ligase, 98.1 1.6E-07 3.5E-12 90.0 -4.0 55 352-406 186-244 (419)
53 PF12799 LRR_4: Leucine Rich r 98.0 1E-05 2.2E-10 55.7 3.8 38 352-389 2-39 (44)
54 KOG0531 Protein phosphatase 1, 97.9 1.8E-06 4E-11 93.4 -1.2 108 347-457 91-199 (414)
55 KOG1909 Ran GTPase-activating 97.9 2.9E-06 6.3E-11 83.7 0.1 152 321-491 27-197 (382)
56 KOG2120 SCF ubiquitin ligase, 97.9 1E-06 2.2E-11 84.6 -3.1 128 349-488 232-372 (419)
57 KOG1859 Leucine-rich repeat pr 97.8 5.1E-07 1.1E-11 96.7 -6.6 128 352-493 165-293 (1096)
58 KOG0531 Protein phosphatase 1, 97.8 4.5E-06 9.8E-11 90.3 0.1 147 349-512 70-219 (414)
59 KOG3665 ZYG-1-like serine/thre 97.7 2.1E-05 4.6E-10 88.9 3.6 83 322-407 146-231 (699)
60 KOG1909 Ran GTPase-activating 97.7 6.1E-06 1.3E-10 81.5 -0.7 185 321-513 89-310 (382)
61 PRK00080 ruvB Holliday junctio 97.7 0.0015 3.2E-08 68.4 16.8 139 1-153 59-224 (328)
62 PF13173 AAA_14: AAA domain 97.7 5.4E-05 1.2E-09 67.0 5.1 89 2-110 11-99 (128)
63 TIGR00767 rho transcription te 97.7 0.00015 3.3E-09 74.9 8.4 82 2-84 177-267 (415)
64 PF12799 LRR_4: Leucine Rich r 97.6 6.3E-05 1.4E-09 51.7 3.8 37 375-411 2-39 (44)
65 PRK15386 type III secretion pr 97.6 9.3E-05 2E-09 76.9 6.6 118 560-717 50-170 (426)
66 TIGR00635 ruvB Holliday juncti 97.6 0.0098 2.1E-07 61.6 21.6 139 1-153 38-203 (305)
67 PRK06893 DNA replication initi 97.6 0.00025 5.3E-09 69.8 8.7 29 2-32 48-76 (229)
68 PF01637 Arch_ATPase: Archaeal 97.6 0.00018 3.8E-09 71.5 7.4 147 2-150 29-233 (234)
69 KOG3665 ZYG-1-like serine/thre 97.6 3.6E-05 7.7E-10 87.1 2.5 134 324-458 122-264 (699)
70 PRK15386 type III secretion pr 97.5 0.00016 3.6E-09 75.1 6.9 58 350-412 51-111 (426)
71 PTZ00112 origin recognition co 97.5 0.0079 1.7E-07 67.9 19.9 84 1-84 789-881 (1164)
72 KOG1859 Leucine-rich repeat pr 97.5 3.7E-06 7.9E-11 90.3 -6.5 105 348-455 184-290 (1096)
73 PRK13342 recombination factor 97.4 0.011 2.4E-07 63.9 19.5 124 2-151 45-196 (413)
74 KOG2982 Uncharacterized conser 97.3 0.0001 2.3E-09 71.2 2.4 82 348-429 68-156 (418)
75 PRK07003 DNA polymerase III su 97.3 0.0045 9.7E-08 69.2 14.4 79 71-150 118-220 (830)
76 cd00009 AAA The AAA+ (ATPases 97.3 0.00091 2E-08 60.7 8.0 95 2-110 28-130 (151)
77 COG2256 MGS1 ATPase related to 97.3 0.023 4.9E-07 58.2 17.8 186 2-216 57-281 (436)
78 KOG1644 U2-associated snRNP A' 97.3 0.00034 7.4E-09 64.1 4.5 104 376-488 44-149 (233)
79 KOG2982 Uncharacterized conser 97.2 9.1E-05 2E-09 71.6 0.5 84 587-676 198-285 (418)
80 PF05621 TniB: Bacterial TniB 97.2 0.005 1.1E-07 61.3 12.4 147 2-148 70-258 (302)
81 COG1474 CDC6 Cdc6-related prot 97.2 0.013 2.8E-07 61.5 16.0 84 2-85 51-136 (366)
82 KOG2028 ATPase related to the 97.1 0.034 7.4E-07 55.9 16.6 87 2-110 171-261 (554)
83 PRK05564 DNA polymerase III su 97.0 0.0048 1E-07 64.1 11.2 92 2-110 35-133 (313)
84 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.0024 5.1E-08 63.0 7.8 82 2-110 47-133 (226)
85 PRK08727 hypothetical protein; 96.9 0.0059 1.3E-07 60.2 10.3 86 2-114 50-140 (233)
86 KOG2123 Uncharacterized conser 96.9 5.9E-05 1.3E-09 72.1 -3.7 100 350-450 18-123 (388)
87 KOG4579 Leucine-rich repeat (L 96.9 0.00026 5.6E-09 60.5 0.2 80 350-429 52-133 (177)
88 PF00308 Bac_DnaA: Bacterial d 96.8 0.0073 1.6E-07 58.8 9.9 93 2-110 43-140 (219)
89 PRK14949 DNA polymerase III su 96.8 0.022 4.7E-07 65.3 14.7 75 71-146 118-215 (944)
90 PRK14087 dnaA chromosomal repl 96.8 0.01 2.2E-07 64.4 11.9 95 2-110 150-249 (450)
91 PRK12323 DNA polymerase III su 96.8 0.012 2.6E-07 65.0 12.2 40 71-110 123-164 (700)
92 PRK14961 DNA polymerase III su 96.8 0.016 3.4E-07 61.4 12.9 40 71-110 118-159 (363)
93 PRK14964 DNA polymerase III su 96.8 0.052 1.1E-06 59.0 16.7 40 71-110 115-156 (491)
94 TIGR00678 holB DNA polymerase 96.8 0.015 3.2E-07 55.4 11.4 40 71-110 95-136 (188)
95 PRK06645 DNA polymerase III su 96.7 0.019 4E-07 62.9 13.0 40 71-110 127-168 (507)
96 KOG2123 Uncharacterized conser 96.7 0.00017 3.7E-09 69.1 -2.3 58 348-406 38-98 (388)
97 COG3899 Predicted ATPase [Gene 96.7 0.039 8.5E-07 64.8 16.4 149 111-279 222-387 (849)
98 PRK04195 replication factor C 96.7 0.096 2.1E-06 57.9 18.7 87 2-110 48-140 (482)
99 COG5238 RNA1 Ran GTPase-activa 96.7 0.00098 2.1E-08 63.8 2.3 114 392-513 88-226 (388)
100 KOG4579 Leucine-rich repeat (L 96.7 0.00048 1E-08 58.9 0.2 80 335-415 62-142 (177)
101 PF00004 AAA: ATPase family as 96.6 0.0053 1.2E-07 54.5 6.6 63 2-84 7-70 (132)
102 PRK08116 hypothetical protein; 96.6 0.0063 1.4E-07 61.2 7.7 94 2-110 123-221 (268)
103 PRK11331 5-methylcytosine-spec 96.6 0.003 6.5E-08 66.8 5.4 81 1-84 202-284 (459)
104 PRK14963 DNA polymerase III su 96.6 0.027 5.9E-07 61.9 13.0 40 71-110 115-156 (504)
105 PRK14960 DNA polymerase III su 96.6 0.019 4.2E-07 63.6 11.6 40 71-110 117-158 (702)
106 PRK12608 transcription termina 96.6 0.014 3E-07 60.4 9.9 82 2-84 142-232 (380)
107 smart00382 AAA ATPases associa 96.5 0.0073 1.6E-07 54.2 6.8 82 2-86 11-92 (148)
108 PF14516 AAA_35: AAA-like doma 96.5 0.22 4.7E-06 52.0 18.5 149 3-158 41-246 (331)
109 PLN03025 replication factor C 96.5 0.022 4.9E-07 59.2 11.1 94 2-110 43-139 (319)
110 TIGR01242 26Sp45 26S proteasom 96.4 0.024 5.2E-07 60.3 11.4 17 2-18 165-181 (364)
111 PRK08084 DNA replication initi 96.4 0.015 3.3E-07 57.3 9.0 85 2-113 54-144 (235)
112 PRK14958 DNA polymerase III su 96.4 0.094 2E-06 57.8 15.7 40 71-110 118-159 (509)
113 PRK12402 replication factor C 96.4 0.036 7.9E-07 58.4 12.3 108 2-110 45-165 (337)
114 KOG1644 U2-associated snRNP A' 96.4 0.0055 1.2E-07 56.4 5.0 61 348-408 61-125 (233)
115 KOG1947 Leucine rich repeat pr 96.4 0.001 2.3E-08 74.1 0.5 83 373-455 187-280 (482)
116 PRK14957 DNA polymerase III su 96.3 0.047 1E-06 60.2 13.1 40 71-110 118-159 (546)
117 PRK14088 dnaA chromosomal repl 96.3 0.053 1.2E-06 58.8 13.2 93 2-110 139-237 (440)
118 PRK14086 dnaA chromosomal repl 96.3 0.073 1.6E-06 59.0 14.0 93 2-110 323-420 (617)
119 TIGR00362 DnaA chromosomal rep 96.3 0.043 9.3E-07 59.3 12.2 93 2-110 145-242 (405)
120 KOG2739 Leucine-rich acidic nu 96.2 0.0018 3.9E-08 62.1 1.2 80 349-429 41-126 (260)
121 PRK05642 DNA replication initi 96.2 0.024 5.1E-07 55.9 9.0 82 2-110 54-140 (234)
122 KOG2543 Origin recognition com 96.2 0.013 2.8E-07 59.4 6.9 84 2-90 39-133 (438)
123 PRK08691 DNA polymerase III su 96.1 0.06 1.3E-06 60.3 12.6 40 71-110 118-159 (709)
124 TIGR02903 spore_lon_C ATP-depe 96.1 0.045 9.7E-07 62.0 11.8 50 60-110 281-334 (615)
125 PRK07940 DNA polymerase III su 96.1 0.063 1.4E-06 57.0 12.2 40 71-110 116-157 (394)
126 PRK14969 DNA polymerase III su 96.1 0.074 1.6E-06 59.1 13.3 40 71-110 118-159 (527)
127 PRK06921 hypothetical protein; 96.1 0.025 5.4E-07 56.8 8.7 114 2-146 126-249 (266)
128 PHA02544 44 clamp loader, smal 96.1 0.065 1.4E-06 55.8 12.2 86 2-110 52-141 (316)
129 KOG1947 Leucine rich repeat pr 96.0 0.0016 3.5E-08 72.5 -0.3 67 616-683 242-308 (482)
130 PRK00149 dnaA chromosomal repl 96.0 0.14 3.1E-06 56.0 14.8 93 2-110 157-254 (450)
131 PRK14956 DNA polymerase III su 96.0 0.11 2.4E-06 55.9 13.3 40 71-110 120-161 (484)
132 cd01133 F1-ATPase_beta F1 ATP 95.9 0.031 6.7E-07 55.5 8.4 81 2-84 78-175 (274)
133 PRK09087 hypothetical protein; 95.9 0.038 8.3E-07 54.0 8.8 16 2-17 53-68 (226)
134 COG0593 DnaA ATPase involved i 95.9 0.15 3.2E-06 53.7 13.3 90 2-110 122-218 (408)
135 PF04665 Pox_A32: Poxvirus A32 95.8 0.022 4.7E-07 55.4 6.6 28 2-31 22-49 (241)
136 PRK14951 DNA polymerase III su 95.8 0.31 6.7E-06 54.7 16.3 40 71-110 123-164 (618)
137 PRK08118 topology modulation p 95.7 0.0044 9.5E-08 57.5 1.5 28 1-28 9-37 (167)
138 PRK09112 DNA polymerase III su 95.7 0.097 2.1E-06 54.8 11.5 89 59-150 124-239 (351)
139 PRK07994 DNA polymerase III su 95.7 0.072 1.6E-06 59.8 11.0 40 71-110 118-159 (647)
140 PRK14959 DNA polymerase III su 95.7 0.11 2.4E-06 57.9 12.2 40 71-110 118-159 (624)
141 KOG3864 Uncharacterized conser 95.7 0.0023 5E-08 58.9 -0.6 69 612-682 120-188 (221)
142 PRK14962 DNA polymerase III su 95.7 0.094 2E-06 57.2 11.6 17 2-18 45-61 (472)
143 TIGR02397 dnaX_nterm DNA polym 95.7 0.18 4E-06 53.5 13.8 41 71-111 116-158 (355)
144 PRK08181 transposase; Validate 95.6 0.016 3.4E-07 58.0 4.9 95 2-115 115-214 (269)
145 PF01695 IstB_IS21: IstB-like 95.6 0.012 2.6E-07 55.1 3.9 90 2-110 56-150 (178)
146 PRK05896 DNA polymerase III su 95.6 0.26 5.7E-06 54.7 14.6 39 72-110 119-159 (605)
147 PRK10536 hypothetical protein; 95.6 0.048 1E-06 53.4 8.0 34 74-108 178-211 (262)
148 TIGR03689 pup_AAA proteasome A 95.6 0.088 1.9E-06 57.5 10.9 17 2-18 225-241 (512)
149 PRK14955 DNA polymerase III su 95.6 0.12 2.5E-06 55.6 11.8 40 71-110 126-167 (397)
150 PRK05707 DNA polymerase III su 95.6 0.14 3.1E-06 53.0 11.9 73 72-149 106-201 (328)
151 PF05496 RuvB_N: Holliday junc 95.6 0.17 3.6E-06 48.4 11.2 36 111-147 182-217 (233)
152 KOG3864 Uncharacterized conser 95.5 0.003 6.5E-08 58.1 -0.4 69 642-718 123-191 (221)
153 TIGR02880 cbbX_cfxQ probable R 95.5 0.13 2.8E-06 52.4 11.3 18 2-19 67-84 (284)
154 CHL00181 cbbX CbbX; Provisiona 95.5 0.15 3.2E-06 51.9 11.7 17 2-18 68-84 (287)
155 PRK00440 rfc replication facto 95.5 0.16 3.4E-06 53.0 12.3 17 2-18 47-63 (319)
156 TIGR02237 recomb_radB DNA repa 95.5 0.067 1.5E-06 51.9 8.9 38 2-42 21-58 (209)
157 PRK07471 DNA polymerase III su 95.5 0.016 3.5E-07 60.9 4.6 86 60-150 125-237 (365)
158 PRK07764 DNA polymerase III su 95.5 0.39 8.6E-06 56.0 16.2 40 71-110 119-160 (824)
159 PF08423 Rad51: Rad51; InterP 95.4 0.096 2.1E-06 52.3 9.8 80 2-82 47-143 (256)
160 cd01123 Rad51_DMC1_radA Rad51_ 95.4 0.077 1.7E-06 52.6 9.1 80 2-82 28-125 (235)
161 PF13191 AAA_16: AAA ATPase do 95.4 0.04 8.6E-07 52.2 6.8 20 1-20 32-51 (185)
162 PRK13341 recombination factor 95.4 0.044 9.5E-07 62.8 8.1 17 2-18 61-77 (725)
163 PRK08451 DNA polymerase III su 95.3 0.61 1.3E-05 51.4 16.1 40 71-110 116-157 (535)
164 PRK14971 DNA polymerase III su 95.2 0.42 9.2E-06 54.1 15.3 40 71-110 120-161 (614)
165 TIGR02881 spore_V_K stage V sp 95.2 0.08 1.7E-06 53.3 8.6 17 2-18 51-67 (261)
166 PRK03992 proteasome-activating 95.2 0.14 3E-06 54.8 10.7 63 2-84 174-236 (389)
167 KOG2739 Leucine-rich acidic nu 95.2 0.011 2.5E-07 56.8 2.2 83 347-429 61-153 (260)
168 KOG2227 Pre-initiation complex 95.1 0.76 1.6E-05 48.4 14.9 83 2-84 184-268 (529)
169 PRK14954 DNA polymerase III su 95.0 0.54 1.2E-05 53.0 15.1 40 71-110 126-167 (620)
170 PRK14950 DNA polymerase III su 95.0 0.27 5.9E-06 55.6 12.9 103 2-110 47-160 (585)
171 PRK09111 DNA polymerase III su 95.0 0.25 5.3E-06 55.6 12.2 40 71-110 131-172 (598)
172 PRK06526 transposase; Provisio 94.9 0.026 5.7E-07 56.1 4.1 92 2-112 107-203 (254)
173 PRK08903 DnaA regulatory inact 94.9 0.11 2.3E-06 51.2 8.4 30 2-33 51-80 (227)
174 PRK14952 DNA polymerase III su 94.9 1 2.3E-05 50.4 16.7 40 71-110 117-158 (584)
175 PF00560 LRR_1: Leucine Rich R 94.9 0.011 2.5E-07 33.5 0.8 21 397-417 1-21 (22)
176 PRK08939 primosomal protein Dn 94.8 0.11 2.4E-06 53.2 8.4 91 2-110 165-261 (306)
177 PRK04132 replication factor C 94.8 0.44 9.6E-06 55.3 14.0 94 2-110 575-670 (846)
178 PRK14965 DNA polymerase III su 94.7 0.53 1.2E-05 53.0 14.1 40 71-110 118-159 (576)
179 PRK14970 DNA polymerase III su 94.7 0.82 1.8E-05 48.7 15.0 17 2-18 48-64 (367)
180 PRK14948 DNA polymerase III su 94.7 0.4 8.7E-06 54.3 13.0 104 2-110 47-161 (620)
181 PTZ00454 26S protease regulato 94.6 0.2 4.2E-06 53.5 9.9 62 2-83 188-249 (398)
182 PTZ00202 tuzin; Provisional 94.6 0.13 2.8E-06 54.0 8.1 44 1-52 294-337 (550)
183 PRK07952 DNA replication prote 94.6 0.075 1.6E-06 52.3 6.3 67 2-84 108-174 (244)
184 TIGR02012 tigrfam_recA protein 94.5 0.11 2.3E-06 53.3 7.4 75 2-83 64-144 (321)
185 PRK12377 putative replication 94.5 0.12 2.7E-06 51.0 7.5 65 2-83 110-174 (248)
186 cd00561 CobA_CobO_BtuR ATP:cor 94.4 0.26 5.6E-06 44.8 8.8 107 2-110 11-138 (159)
187 PRK06835 DNA replication prote 94.4 0.039 8.5E-07 57.0 4.1 93 2-110 192-289 (329)
188 PRK12422 chromosomal replicati 94.4 0.17 3.7E-06 54.8 9.1 91 2-110 150-245 (445)
189 TIGR02640 gas_vesic_GvpN gas v 94.4 0.26 5.6E-06 49.6 9.8 34 2-40 30-63 (262)
190 cd00983 recA RecA is a bacter 94.4 0.11 2.4E-06 53.2 7.1 75 2-83 64-144 (325)
191 PRK09354 recA recombinase A; P 94.4 0.13 2.8E-06 53.1 7.6 75 2-83 69-149 (349)
192 COG1484 DnaC DNA replication p 94.3 0.13 2.8E-06 51.2 7.3 66 2-84 114-179 (254)
193 PRK14953 DNA polymerase III su 94.3 0.64 1.4E-05 51.0 13.3 40 71-110 118-159 (486)
194 PRK09361 radB DNA repair and r 94.3 0.21 4.5E-06 49.1 8.7 35 2-39 32-66 (225)
195 PLN03187 meiotic recombination 94.2 0.24 5.2E-06 51.4 9.1 49 2-51 135-187 (344)
196 TIGR02238 recomb_DMC1 meiotic 94.1 0.23 5E-06 51.1 8.9 80 2-82 105-201 (313)
197 PRK09183 transposase/IS protei 94.1 0.062 1.3E-06 53.8 4.6 93 2-112 111-208 (259)
198 PRK07261 topology modulation p 94.1 0.19 4.1E-06 46.8 7.6 28 1-28 8-36 (171)
199 PF00560 LRR_1: Leucine Rich R 94.0 0.022 4.7E-07 32.4 0.6 20 352-371 1-20 (22)
200 PHA00729 NTP-binding motif con 93.9 0.14 3.1E-06 49.2 6.4 16 2-17 26-41 (226)
201 PTZ00361 26 proteosome regulat 93.9 0.3 6.5E-06 52.5 9.5 17 2-18 226-242 (438)
202 CHL00195 ycf46 Ycf46; Provisio 93.8 1.5 3.3E-05 48.0 14.9 63 2-84 268-330 (489)
203 PRK06647 DNA polymerase III su 93.8 0.95 2.1E-05 50.7 13.6 40 71-110 118-159 (563)
204 PRK06620 hypothetical protein; 93.8 0.2 4.3E-06 48.5 7.3 16 2-17 53-68 (214)
205 PF13306 LRR_5: Leucine rich r 93.7 0.18 3.9E-06 44.3 6.5 104 343-452 4-111 (129)
206 cd01393 recA_like RecA is a b 93.7 0.28 6E-06 48.2 8.5 43 2-47 28-76 (226)
207 PRK08769 DNA polymerase III su 93.7 0.86 1.9E-05 46.9 12.0 72 71-149 112-206 (319)
208 PF00154 RecA: recA bacterial 93.7 0.32 7E-06 49.7 8.8 76 2-84 62-143 (322)
209 CHL00176 ftsH cell division pr 93.6 0.46 9.9E-06 53.9 10.8 63 2-84 225-287 (638)
210 cd01394 radB RadB. The archaea 93.6 0.32 6.9E-06 47.5 8.5 33 2-36 28-60 (218)
211 PRK07133 DNA polymerase III su 93.5 0.89 1.9E-05 51.8 12.7 40 71-110 117-158 (725)
212 PF13481 AAA_25: AAA domain; P 93.5 0.13 2.9E-06 49.0 5.6 33 2-34 41-81 (193)
213 COG0470 HolB ATPase involved i 93.5 0.2 4.3E-06 52.4 7.4 93 2-110 33-149 (325)
214 COG5238 RNA1 Ran GTPase-activa 93.4 0.056 1.2E-06 52.2 2.7 43 320-364 88-133 (388)
215 COG1066 Sms Predicted ATP-depe 93.2 0.25 5.5E-06 51.1 7.1 77 2-84 102-180 (456)
216 PLN03186 DNA repair protein RA 93.2 0.35 7.7E-06 50.2 8.4 49 2-51 132-184 (342)
217 PF00448 SRP54: SRP54-type pro 93.2 0.53 1.1E-05 44.8 9.0 78 2-81 10-92 (196)
218 PF05673 DUF815: Protein of un 93.2 1.7 3.6E-05 42.3 12.2 83 2-110 61-150 (249)
219 cd01135 V_A-ATPase_B V/A-type 93.2 0.4 8.7E-06 47.7 8.3 83 2-84 78-178 (276)
220 PRK14722 flhF flagellar biosyn 93.0 0.38 8.1E-06 50.5 8.3 81 2-84 146-227 (374)
221 cd01120 RecA-like_NTPases RecA 93.0 0.66 1.4E-05 42.6 9.3 33 2-36 8-40 (165)
222 PRK05563 DNA polymerase III su 93.0 1.3 2.7E-05 49.9 12.9 40 71-110 118-159 (559)
223 KOG0735 AAA+-type ATPase [Post 92.9 0.26 5.5E-06 54.4 7.0 65 2-84 440-506 (952)
224 PRK06871 DNA polymerase III su 92.9 1.5 3.2E-05 45.3 12.3 101 2-110 33-147 (325)
225 KOG1532 GTPase XAB1, interacts 92.9 0.33 7.2E-06 47.1 6.9 51 1-51 27-86 (366)
226 TIGR01241 FtsH_fam ATP-depende 92.8 0.5 1.1E-05 52.5 9.5 63 2-84 97-159 (495)
227 PRK06305 DNA polymerase III su 92.8 1.2 2.6E-05 48.5 12.2 40 71-110 120-161 (451)
228 TIGR02239 recomb_RAD51 DNA rep 92.8 0.46 9.9E-06 49.0 8.5 48 2-50 105-156 (316)
229 KOG0733 Nuclear AAA ATPase (VC 92.7 0.28 6.1E-06 53.1 6.8 63 2-84 554-616 (802)
230 COG2812 DnaX DNA polymerase II 92.7 2.7 5.9E-05 45.9 14.4 101 3-110 48-159 (515)
231 PF13177 DNA_pol3_delta2: DNA 92.7 0.41 8.9E-06 44.1 7.2 40 71-110 101-142 (162)
232 PRK12597 F0F1 ATP synthase sub 92.6 0.49 1.1E-05 51.0 8.7 82 2-84 152-249 (461)
233 CHL00095 clpC Clp protease ATP 92.6 0.66 1.4E-05 54.9 10.7 70 2-83 209-282 (821)
234 cd01121 Sms Sms (bacterial rad 92.6 0.38 8.3E-06 50.7 7.7 77 2-83 91-169 (372)
235 PRK05541 adenylylsulfate kinas 92.5 0.39 8.4E-06 45.0 7.1 28 1-30 15-42 (176)
236 PF13306 LRR_5: Leucine rich r 92.5 0.38 8.2E-06 42.2 6.7 115 322-446 10-128 (129)
237 PRK04296 thymidine kinase; Pro 92.4 0.14 3E-06 48.7 3.8 101 2-110 11-116 (190)
238 KOG0733 Nuclear AAA ATPase (VC 92.4 1 2.3E-05 48.9 10.6 63 2-84 232-294 (802)
239 TIGR03305 alt_F1F0_F1_bet alte 92.4 0.48 1E-05 50.8 8.2 82 2-84 147-244 (449)
240 COG1222 RPT1 ATP-dependent 26S 92.4 1.6 3.5E-05 44.5 11.2 63 2-84 194-256 (406)
241 PRK04301 radA DNA repair and r 92.2 0.8 1.7E-05 47.6 9.5 48 2-50 111-162 (317)
242 TIGR03877 thermo_KaiC_1 KaiC d 92.1 0.78 1.7E-05 45.4 9.0 39 2-44 30-68 (237)
243 PRK06090 DNA polymerase III su 92.0 3.7 8E-05 42.3 13.8 40 71-110 107-148 (319)
244 PF13504 LRR_7: Leucine rich r 91.9 0.094 2E-06 27.6 1.2 15 397-411 2-16 (17)
245 KOG0989 Replication factor C, 91.9 1.3 2.8E-05 44.1 9.8 134 2-150 66-230 (346)
246 COG4088 Predicted nucleotide k 91.9 0.2 4.4E-06 46.5 4.0 20 1-20 9-28 (261)
247 PF00006 ATP-synt_ab: ATP synt 91.8 0.55 1.2E-05 45.2 7.2 77 2-82 24-115 (215)
248 TIGR03499 FlhF flagellar biosy 91.8 0.66 1.4E-05 47.2 8.2 78 2-81 203-281 (282)
249 PRK13849 putative crown gall t 91.7 0.75 1.6E-05 45.1 8.2 39 2-42 11-49 (231)
250 TIGR02639 ClpA ATP-dependent C 91.7 0.61 1.3E-05 54.5 8.8 70 2-84 212-286 (731)
251 PRK09280 F0F1 ATP synthase sub 91.7 0.75 1.6E-05 49.5 8.6 82 2-84 153-250 (463)
252 PRK08533 flagellar accessory p 91.6 1.1 2.4E-05 44.0 9.3 39 2-44 33-71 (230)
253 COG1618 Predicted nucleotide k 91.6 0.22 4.7E-06 44.5 3.7 24 1-25 13-36 (179)
254 COG1373 Predicted ATPase (AAA+ 91.6 0.29 6.3E-06 52.4 5.6 38 72-110 94-131 (398)
255 TIGR02236 recomb_radA DNA repa 91.5 0.92 2E-05 47.0 9.2 48 2-50 104-155 (310)
256 KOG0741 AAA+-type ATPase [Post 91.5 1.8 4E-05 46.3 11.0 68 2-91 547-617 (744)
257 PRK07399 DNA polymerase III su 91.5 2.5 5.3E-05 43.7 12.0 50 60-110 108-163 (314)
258 TIGR01243 CDC48 AAA family ATP 91.4 1 2.2E-05 52.8 10.4 62 2-83 496-557 (733)
259 PRK04328 hypothetical protein; 91.4 0.77 1.7E-05 45.8 8.0 44 2-50 32-75 (249)
260 PTZ00035 Rad51 protein; Provis 91.4 1.1 2.4E-05 46.7 9.5 48 2-50 127-178 (337)
261 PRK12727 flagellar biosynthesi 91.3 0.7 1.5E-05 50.3 8.0 79 2-82 359-438 (559)
262 TIGR03346 chaperone_ClpB ATP-d 91.3 0.37 8E-06 57.2 6.6 102 2-110 604-718 (852)
263 PRK10865 protein disaggregatio 91.3 0.36 7.7E-06 57.2 6.3 84 2-92 607-692 (857)
264 KOG1514 Origin recognition com 91.2 1.4 3E-05 48.9 10.0 153 2-158 431-610 (767)
265 KOG1969 DNA replication checkp 91.1 0.51 1.1E-05 52.4 6.7 65 1-84 334-399 (877)
266 TIGR01040 V-ATPase_V1_B V-type 91.1 0.8 1.7E-05 48.9 8.1 83 2-84 150-259 (466)
267 TIGR01041 ATP_syn_B_arch ATP s 91.0 0.85 1.8E-05 49.2 8.4 83 2-84 150-250 (458)
268 TIGR02639 ClpA ATP-dependent C 90.8 0.44 9.5E-06 55.7 6.5 73 2-84 493-565 (731)
269 PF13207 AAA_17: AAA domain; P 90.8 0.17 3.7E-06 43.9 2.5 17 1-17 7-23 (121)
270 cd03115 SRP The signal recogni 90.8 1 2.3E-05 41.9 8.0 48 1-50 8-56 (173)
271 cd01124 KaiC KaiC is a circadi 90.6 1.4 2.9E-05 41.7 8.7 38 2-43 8-45 (187)
272 PTZ00185 ATPase alpha subunit; 90.6 1.3 2.9E-05 47.8 9.1 83 2-84 198-301 (574)
273 PRK06067 flagellar accessory p 90.5 1.4 3.1E-05 43.4 9.1 39 2-44 34-72 (234)
274 KOG0991 Replication factor C, 90.5 3.4 7.4E-05 39.4 10.6 43 1-43 56-98 (333)
275 PF13504 LRR_7: Leucine rich r 90.3 0.18 4E-06 26.5 1.3 15 352-366 2-16 (17)
276 TIGR01039 atpD ATP synthase, F 90.0 1.4 3E-05 47.3 8.8 82 2-84 152-249 (461)
277 PRK07993 DNA polymerase III su 90.0 3.6 7.9E-05 42.8 11.7 52 59-110 91-148 (334)
278 PRK09519 recA DNA recombinatio 89.9 0.97 2.1E-05 52.0 7.9 75 2-83 69-149 (790)
279 PRK04196 V-type ATP synthase s 89.8 1.2 2.6E-05 48.2 8.3 82 2-84 152-252 (460)
280 PRK08058 DNA polymerase III su 89.7 3.3 7.2E-05 43.2 11.3 40 71-110 109-150 (329)
281 KOG0736 Peroxisome assembly fa 89.6 0.74 1.6E-05 51.5 6.4 63 2-84 714-776 (953)
282 PRK12724 flagellar biosynthesi 89.5 1.3 2.7E-05 47.1 7.9 75 2-80 232-307 (432)
283 COG1192 Soj ATPases involved i 89.5 0.44 9.6E-06 47.9 4.5 33 2-35 12-44 (259)
284 TIGR03878 thermo_KaiC_2 KaiC d 89.5 1.8 4E-05 43.3 8.9 30 2-33 45-74 (259)
285 CHL00095 clpC Clp protease ATP 89.4 0.56 1.2E-05 55.5 6.0 76 2-84 548-623 (821)
286 PRK08927 fliI flagellum-specif 89.4 1.5 3.2E-05 47.0 8.5 79 2-84 167-260 (442)
287 TIGR02655 circ_KaiC circadian 89.4 1.5 3.2E-05 48.5 8.9 75 2-81 272-362 (484)
288 TIGR03345 VI_ClpV1 type VI sec 89.4 0.47 1E-05 56.0 5.2 76 2-84 605-680 (852)
289 COG0468 RecA RecA/RadA recombi 89.3 1.5 3.4E-05 43.8 8.0 78 2-83 69-152 (279)
290 TIGR03324 alt_F1F0_F1_al alter 89.2 1.4 3.1E-05 47.8 8.2 78 3-84 172-266 (497)
291 COG1223 Predicted ATPase (AAA+ 89.2 1.9 4.1E-05 41.8 8.0 63 2-84 160-222 (368)
292 PRK11823 DNA repair protein Ra 89.1 0.81 1.8E-05 49.8 6.5 77 2-83 89-167 (446)
293 cd02037 MRP-like MRP (Multiple 89.1 1.3 2.8E-05 41.1 7.1 31 2-34 9-39 (169)
294 PRK05703 flhF flagellar biosyn 89.0 1.4 3.1E-05 47.5 8.2 79 2-82 230-309 (424)
295 PF13238 AAA_18: AAA domain; P 89.0 0.29 6.2E-06 42.9 2.5 17 1-17 6-22 (129)
296 PRK12723 flagellar biosynthesi 88.9 1.6 3.5E-05 46.2 8.3 81 2-84 183-266 (388)
297 cd00544 CobU Adenosylcobinamid 88.9 1.5 3.3E-05 40.6 7.2 75 2-82 8-83 (169)
298 TIGR03345 VI_ClpV1 type VI sec 88.8 1.6 3.5E-05 51.6 9.1 70 2-84 217-292 (852)
299 TIGR00708 cobA cob(I)alamin ad 88.8 2.4 5.2E-05 39.1 8.2 107 2-110 14-140 (173)
300 PF01583 APS_kinase: Adenylyls 88.7 0.6 1.3E-05 42.2 4.3 29 1-31 10-38 (156)
301 CHL00060 atpB ATP synthase CF1 88.6 1.6 3.4E-05 47.3 8.0 82 2-84 170-274 (494)
302 PRK11034 clpA ATP-dependent Cl 88.6 1.4 3.1E-05 51.0 8.3 70 2-83 216-289 (758)
303 TIGR00416 sms DNA repair prote 88.5 1.3 2.9E-05 48.2 7.6 77 2-83 103-181 (454)
304 KOG0473 Leucine-rich repeat pr 88.3 0.037 8.1E-07 52.1 -3.7 83 348-430 39-122 (326)
305 PRK12726 flagellar biosynthesi 88.3 2.6 5.6E-05 44.1 9.0 80 2-83 215-296 (407)
306 cd01132 F1_ATPase_alpha F1 ATP 88.3 1.7 3.6E-05 43.4 7.4 79 2-84 78-173 (274)
307 TIGR00959 ffh signal recogniti 88.3 2.3 4.9E-05 45.8 9.0 80 1-82 107-192 (428)
308 PHA02518 ParA-like protein; Pr 88.2 0.84 1.8E-05 44.2 5.4 37 2-40 10-46 (211)
309 COG0542 clpA ATP-binding subun 88.2 0.48 1.1E-05 53.9 4.1 83 2-94 530-617 (786)
310 TIGR03574 selen_PSTK L-seryl-t 88.1 1.7 3.7E-05 43.3 7.6 18 1-18 7-24 (249)
311 COG3640 CooC CO dehydrogenase 88.1 0.83 1.8E-05 43.7 4.8 44 2-53 9-52 (255)
312 PRK08972 fliI flagellum-specif 88.1 1.3 2.8E-05 47.3 6.9 79 2-84 171-264 (444)
313 cd01122 GP4d_helicase GP4d_hel 87.9 2.4 5.1E-05 43.0 8.7 43 2-47 39-81 (271)
314 PRK08149 ATP synthase SpaL; Va 87.9 1.4 3E-05 47.1 7.0 79 2-84 160-253 (428)
315 KOG3347 Predicted nucleotide k 87.9 0.35 7.6E-06 42.4 2.1 26 2-34 16-41 (176)
316 PRK11889 flhF flagellar biosyn 87.8 2.7 5.8E-05 44.2 8.8 80 2-83 250-331 (436)
317 COG1102 Cmk Cytidylate kinase 87.8 0.75 1.6E-05 41.2 4.1 40 1-53 8-47 (179)
318 PF06745 KaiC: KaiC; InterPro 87.8 1.1 2.3E-05 44.1 5.8 39 2-43 28-66 (226)
319 PF07015 VirC1: VirC1 protein; 87.8 0.9 2E-05 43.7 5.0 37 2-40 11-47 (231)
320 KOG0730 AAA+-type ATPase [Post 87.7 2.4 5.1E-05 46.9 8.6 18 2-19 477-494 (693)
321 PF01656 CbiA: CobQ/CobB/MinD/ 87.7 0.82 1.8E-05 43.5 4.9 37 1-39 7-43 (195)
322 PRK07276 DNA polymerase III su 87.6 6.1 0.00013 40.0 11.0 40 71-110 103-144 (290)
323 cd01134 V_A-ATPase_A V/A-type 87.5 2.8 6.1E-05 43.2 8.6 39 2-44 166-205 (369)
324 PRK10867 signal recognition pa 87.4 2.8 6.1E-05 45.1 9.0 81 1-82 108-193 (433)
325 PRK12678 transcription termina 87.3 2 4.3E-05 47.2 7.7 79 2-84 425-515 (672)
326 COG0563 Adk Adenylate kinase a 87.1 1.1 2.4E-05 41.8 5.2 17 2-18 9-25 (178)
327 PF07726 AAA_3: ATPase family 87.0 0.25 5.5E-06 42.6 0.8 17 2-18 8-24 (131)
328 COG2255 RuvB Holliday junction 87.0 35 0.00075 34.1 18.9 35 111-146 184-218 (332)
329 PHA02244 ATPase-like protein 86.9 2.1 4.6E-05 44.5 7.4 17 2-18 128-144 (383)
330 PRK06936 type III secretion sy 86.8 1.8 3.9E-05 46.3 7.1 79 2-84 171-264 (439)
331 PRK06964 DNA polymerase III su 86.7 9.7 0.00021 39.7 12.3 52 59-110 115-172 (342)
332 PF07724 AAA_2: AAA domain (Cd 86.7 0.71 1.5E-05 42.9 3.6 34 2-36 12-45 (171)
333 cd01131 PilT Pilus retraction 86.7 0.64 1.4E-05 44.5 3.4 98 2-109 10-108 (198)
334 COG1157 FliI Flagellar biosynt 86.7 2.8 6.1E-05 43.8 8.1 78 2-83 172-264 (441)
335 TIGR02858 spore_III_AA stage I 86.5 1.9 4.1E-05 43.3 6.8 99 2-110 120-229 (270)
336 PRK06002 fliI flagellum-specif 86.5 1.8 3.9E-05 46.5 6.9 80 2-84 174-266 (450)
337 TIGR00064 ftsY signal recognit 86.5 3.8 8.2E-05 41.3 9.0 80 1-83 80-165 (272)
338 COG0003 ArsA Predicted ATPase 86.4 1 2.3E-05 46.2 5.0 41 1-43 10-50 (322)
339 COG0467 RAD55 RecA-superfamily 86.4 1.5 3.1E-05 44.2 6.0 45 2-51 32-76 (260)
340 cd00046 DEXDc DEAD-like helica 86.3 2 4.3E-05 37.8 6.4 29 2-30 9-37 (144)
341 TIGR01359 UMP_CMP_kin_fam UMP- 86.2 2 4.4E-05 40.4 6.7 17 1-17 7-23 (183)
342 cd01125 repA Hexameric Replica 86.2 2.6 5.7E-05 41.7 7.7 18 1-18 9-26 (239)
343 PF08433 KTI12: Chromatin asso 86.1 1.1 2.3E-05 45.1 4.7 19 1-19 9-27 (270)
344 PRK00771 signal recognition pa 86.1 2.3 5E-05 45.8 7.6 79 1-83 103-186 (437)
345 TIGR03881 KaiC_arch_4 KaiC dom 86.0 5 0.00011 39.3 9.6 44 2-50 29-72 (229)
346 PRK08233 hypothetical protein; 86.0 2 4.4E-05 40.3 6.5 17 1-17 11-27 (182)
347 TIGR00962 atpA proton transloc 85.8 2.4 5.2E-05 46.5 7.6 79 2-84 170-265 (501)
348 PRK14974 cell division protein 85.8 3.5 7.6E-05 42.8 8.5 82 1-84 148-234 (336)
349 cd02025 PanK Pantothenate kina 85.8 3.7 8.1E-05 39.9 8.3 34 2-35 8-41 (220)
350 PRK14721 flhF flagellar biosyn 85.7 4.1 8.8E-05 43.6 9.1 78 2-81 200-278 (420)
351 COG1428 Deoxynucleoside kinase 85.7 1.1 2.5E-05 42.1 4.4 41 1-46 12-52 (216)
352 cd02040 NifH NifH gene encodes 85.7 1.1 2.3E-05 45.4 4.7 33 2-36 10-42 (270)
353 PRK06217 hypothetical protein; 85.7 2.1 4.6E-05 40.3 6.4 28 1-29 9-38 (183)
354 PRK03839 putative kinase; Prov 85.6 0.55 1.2E-05 44.2 2.4 18 1-18 8-25 (180)
355 PLN00020 ribulose bisphosphate 85.6 2.2 4.9E-05 44.2 6.7 18 2-19 157-174 (413)
356 PF03796 DnaB_C: DnaB-like hel 85.6 3.1 6.6E-05 41.8 7.9 44 2-48 28-71 (259)
357 smart00370 LRR Leucine-rich re 85.6 0.65 1.4E-05 27.5 1.8 19 396-414 2-20 (26)
358 smart00369 LRR_TYP Leucine-ric 85.6 0.65 1.4E-05 27.5 1.8 19 396-414 2-20 (26)
359 PRK00625 shikimate kinase; Pro 85.4 0.59 1.3E-05 43.5 2.4 18 1-18 8-25 (173)
360 PRK06995 flhF flagellar biosyn 85.4 3.4 7.3E-05 45.1 8.4 51 2-52 265-316 (484)
361 PF07728 AAA_5: AAA domain (dy 85.4 1.8 3.9E-05 38.5 5.6 36 2-42 8-43 (139)
362 PRK11034 clpA ATP-dependent Cl 85.2 1.1 2.4E-05 52.0 4.9 73 2-84 497-569 (758)
363 cd02042 ParA ParA and ParB of 85.2 0.72 1.6E-05 38.7 2.7 17 2-18 9-25 (104)
364 TIGR03346 chaperone_ClpB ATP-d 85.2 4.7 0.0001 48.1 10.3 70 2-84 203-278 (852)
365 PRK10865 protein disaggregatio 85.1 2.3 5.1E-05 50.4 7.7 70 2-84 208-283 (857)
366 PF02374 ArsA_ATPase: Anion-tr 85.1 1.2 2.6E-05 45.8 4.7 39 2-42 10-48 (305)
367 TIGR00602 rad24 checkpoint pro 85.0 0.68 1.5E-05 52.2 3.1 17 2-18 119-135 (637)
368 TIGR01425 SRP54_euk signal rec 85.0 3.8 8.2E-05 43.9 8.4 49 1-51 108-157 (429)
369 PRK14723 flhF flagellar biosyn 84.8 3.5 7.5E-05 47.4 8.5 79 2-82 194-273 (767)
370 KOG0079 GTP-binding protein H- 84.8 0.93 2E-05 39.4 3.1 15 2-16 17-31 (198)
371 COG3267 ExeA Type II secretory 84.5 26 0.00057 34.3 12.9 78 3-84 61-143 (269)
372 PRK05986 cob(I)alamin adenolsy 84.5 5.9 0.00013 37.2 8.5 107 2-110 31-158 (191)
373 COG2607 Predicted ATPase (AAA+ 84.4 9.8 0.00021 36.8 9.8 82 3-110 95-183 (287)
374 COG3598 RepA RecA-family ATPas 84.4 3.4 7.4E-05 41.5 7.1 51 2-52 98-157 (402)
375 PRK15429 formate hydrogenlyase 84.3 2.8 6.1E-05 48.8 7.9 31 2-34 408-438 (686)
376 KOG0729 26S proteasome regulat 84.3 4.5 9.8E-05 39.2 7.7 61 2-82 220-280 (435)
377 PF13671 AAA_33: AAA domain; P 84.3 0.73 1.6E-05 41.3 2.5 17 1-17 7-23 (143)
378 PRK10733 hflB ATP-dependent me 84.2 3.5 7.5E-05 47.4 8.4 17 2-18 194-210 (644)
379 PTZ00088 adenylate kinase 1; P 84.2 1.3 2.7E-05 43.4 4.2 18 1-18 14-31 (229)
380 TIGR03880 KaiC_arch_3 KaiC dom 83.9 5.2 0.00011 39.1 8.5 31 2-34 25-55 (224)
381 cd00984 DnaB_C DnaB helicase C 83.6 7.1 0.00015 38.6 9.5 42 2-46 22-63 (242)
382 PF00910 RNA_helicase: RNA hel 83.6 0.85 1.8E-05 38.6 2.4 18 2-19 7-24 (107)
383 PF07693 KAP_NTPase: KAP famil 83.5 4 8.7E-05 42.5 8.0 46 3-48 30-80 (325)
384 PRK05922 type III secretion sy 83.5 3.6 7.8E-05 44.1 7.5 79 2-84 166-259 (434)
385 cd02019 NK Nucleoside/nucleoti 83.4 0.9 1.9E-05 34.8 2.3 16 2-17 8-23 (69)
386 PRK10037 cell division protein 83.4 1.4 3E-05 44.0 4.3 30 2-33 11-40 (250)
387 TIGR01287 nifH nitrogenase iro 83.3 1.4 3.1E-05 44.6 4.5 30 2-33 9-38 (275)
388 CHL00059 atpA ATP synthase CF1 83.3 3.5 7.7E-05 44.6 7.4 79 2-84 150-245 (485)
389 PRK08472 fliI flagellum-specif 83.2 3.2 7E-05 44.5 7.1 76 2-84 166-258 (434)
390 KOG0731 AAA+-type ATPase conta 83.2 8.8 0.00019 43.9 10.6 63 2-84 353-415 (774)
391 PRK13768 GTPase; Provisional 83.2 5.3 0.00011 39.9 8.3 30 1-32 10-39 (253)
392 PRK05688 fliI flagellum-specif 83.1 3.4 7.4E-05 44.5 7.2 79 2-84 177-270 (451)
393 cd02036 MinD Bacterial cell di 83.0 1.4 3.1E-05 41.2 4.0 31 1-33 8-38 (179)
394 PRK09099 type III secretion sy 82.9 2.9 6.3E-05 45.0 6.6 80 2-84 172-265 (441)
395 cd01136 ATPase_flagellum-secre 82.8 4.1 8.8E-05 42.0 7.3 79 2-84 78-171 (326)
396 TIGR02655 circ_KaiC circadian 82.7 5.3 0.00011 44.2 8.8 45 2-50 30-74 (484)
397 PRK06762 hypothetical protein; 82.6 0.9 1.9E-05 42.0 2.4 17 1-17 10-26 (166)
398 PRK09302 circadian clock prote 82.6 5 0.00011 44.8 8.7 44 2-50 282-325 (509)
399 PRK13949 shikimate kinase; Pro 82.5 1.9 4.2E-05 39.9 4.6 18 1-18 9-26 (169)
400 COG0529 CysC Adenylylsulfate k 82.3 1.2 2.5E-05 40.7 2.8 20 1-20 31-50 (197)
401 PRK07594 type III secretion sy 82.3 2.9 6.2E-05 44.9 6.2 79 2-84 164-257 (433)
402 TIGR01281 DPOR_bchL light-inde 82.2 1.6 3.5E-05 44.1 4.3 30 2-33 9-38 (268)
403 PF08303 tRNA_lig_kinase: tRNA 82.2 0.86 1.9E-05 41.1 1.9 38 2-48 8-50 (168)
404 KOG2228 Origin recognition com 82.2 13 0.00029 37.8 10.2 116 2-121 58-191 (408)
405 TIGR03496 FliI_clade1 flagella 81.9 3.7 7.9E-05 44.0 6.9 79 2-84 146-239 (411)
406 PRK07196 fliI flagellum-specif 81.9 3.8 8.2E-05 44.0 6.9 79 2-84 164-257 (434)
407 PF06564 YhjQ: YhjQ protein; 81.5 1.7 3.8E-05 42.5 3.9 30 2-33 11-40 (243)
408 PRK13886 conjugal transfer pro 81.5 3.2 6.8E-05 40.7 5.7 29 2-32 12-40 (241)
409 PRK13231 nitrogenase reductase 81.5 1.3 2.8E-05 44.7 3.2 31 2-35 11-41 (264)
410 TIGR01360 aden_kin_iso1 adenyl 81.5 3.7 8E-05 38.7 6.2 17 1-17 11-27 (188)
411 PF02367 UPF0079: Uncharacteri 81.3 1 2.2E-05 38.9 2.1 17 3-19 25-41 (123)
412 PRK11608 pspF phage shock prot 81.3 3.9 8.4E-05 42.6 6.8 31 2-34 38-68 (326)
413 PRK02118 V-type ATP synthase s 81.2 5.8 0.00013 42.5 8.0 79 2-84 149-243 (436)
414 TIGR03498 FliI_clade3 flagella 81.2 3.5 7.5E-05 44.1 6.4 80 2-84 149-242 (418)
415 PF01202 SKI: Shikimate kinase 81.2 2.7 5.8E-05 38.5 5.0 19 2-20 1-19 (158)
416 smart00367 LRR_CC Leucine-rich 81.2 0.91 2E-05 26.9 1.2 17 702-718 1-17 (26)
417 PRK13185 chlL protochlorophyll 81.0 2.1 4.6E-05 43.3 4.6 30 2-33 11-40 (270)
418 PRK09302 circadian clock prote 80.9 5.4 0.00012 44.6 8.2 40 2-44 40-79 (509)
419 PRK08699 DNA polymerase III su 80.9 20 0.00043 37.2 11.7 17 2-18 30-46 (325)
420 cd02027 APSK Adenosine 5'-phos 80.8 7.8 0.00017 35.0 7.8 17 2-18 8-24 (149)
421 cd02032 Bchl_like This family 80.8 1.9 4.2E-05 43.5 4.3 29 2-32 9-37 (267)
422 PRK13343 F0F1 ATP synthase sub 80.6 4.9 0.00011 43.9 7.4 79 2-84 171-266 (502)
423 PRK13230 nitrogenase reductase 80.6 2.2 4.7E-05 43.4 4.6 30 2-33 10-39 (279)
424 PRK13233 nifH nitrogenase redu 80.6 1.6 3.4E-05 44.4 3.6 33 2-35 11-43 (275)
425 PRK05973 replicative DNA helic 80.6 3.9 8.5E-05 40.1 6.0 39 2-44 73-111 (237)
426 COG0194 Gmk Guanylate kinase [ 80.4 5.9 0.00013 36.7 6.7 16 2-17 13-28 (191)
427 PRK09281 F0F1 ATP synthase sub 80.4 5.1 0.00011 44.0 7.5 79 2-84 171-266 (502)
428 PRK07132 DNA polymerase III su 80.4 30 0.00065 35.4 12.6 40 71-110 89-130 (299)
429 PRK00131 aroK shikimate kinase 80.2 1.2 2.6E-05 41.4 2.4 18 1-18 12-29 (175)
430 PRK13947 shikimate kinase; Pro 80.1 1.2 2.7E-05 41.3 2.4 18 1-18 9-26 (171)
431 cd01983 Fer4_NifH The Fer4_Nif 80.1 1.5 3.3E-05 35.8 2.7 18 2-19 8-25 (99)
432 cd03214 ABC_Iron-Siderophores_ 80.1 5.1 0.00011 37.6 6.6 111 2-117 34-165 (180)
433 cd02021 GntK Gluconate kinase 79.9 1.2 2.7E-05 40.2 2.3 17 1-17 7-23 (150)
434 KOG0738 AAA+-type ATPase [Post 79.8 18 0.0004 37.5 10.5 18 2-19 254-271 (491)
435 TIGR03497 FliI_clade2 flagella 79.7 4.4 9.5E-05 43.4 6.6 79 2-84 146-239 (413)
436 PRK07721 fliI flagellum-specif 79.7 5.3 0.00012 43.1 7.3 80 2-84 167-260 (438)
437 PF02223 Thymidylate_kin: Thym 79.6 5.1 0.00011 37.8 6.5 42 2-46 5-47 (186)
438 COG0055 AtpD F0F1-type ATP syn 79.6 4.3 9.4E-05 41.6 6.0 80 2-84 156-253 (468)
439 TIGR01969 minD_arch cell divis 79.6 2 4.4E-05 42.8 3.9 29 2-32 10-38 (251)
440 PRK13235 nifH nitrogenase redu 79.5 2.2 4.8E-05 43.2 4.2 29 2-32 10-38 (274)
441 KOG0473 Leucine-rich repeat pr 79.4 0.095 2.1E-06 49.5 -5.2 88 368-457 36-124 (326)
442 PRK13695 putative NTPase; Prov 79.3 2.2 4.8E-05 39.8 3.8 27 2-29 9-35 (174)
443 PRK06793 fliI flagellum-specif 79.3 5.4 0.00012 42.8 7.1 80 2-84 165-258 (432)
444 PRK14532 adenylate kinase; Pro 79.3 5.9 0.00013 37.4 6.9 17 1-17 8-24 (188)
445 PF06414 Zeta_toxin: Zeta toxi 79.3 2.6 5.6E-05 40.4 4.4 109 2-115 24-136 (199)
446 PF02562 PhoH: PhoH-like prote 79.2 1.8 3.9E-05 41.3 3.1 29 2-30 28-56 (205)
447 COG0541 Ffh Signal recognition 79.1 10 0.00022 40.1 8.7 49 2-52 109-158 (451)
448 TIGR03371 cellulose_yhjQ cellu 79.1 2.9 6.4E-05 41.5 4.9 31 2-34 11-41 (246)
449 PF03266 NTPase_1: NTPase; In 79.0 2.3 5.1E-05 39.3 3.8 17 2-18 8-24 (168)
450 COG0125 Tmk Thymidylate kinase 78.8 4.2 9.1E-05 38.9 5.5 42 2-45 12-53 (208)
451 KOG0743 AAA+-type ATPase [Post 78.7 34 0.00074 36.5 12.4 18 1-18 243-260 (457)
452 PF03205 MobB: Molybdopterin g 78.7 3 6.5E-05 37.2 4.3 31 2-33 9-39 (140)
453 cd00227 CPT Chloramphenicol (C 78.4 1.5 3.2E-05 41.0 2.4 18 1-18 10-27 (175)
454 PF00485 PRK: Phosphoribulokin 78.3 1.6 3.5E-05 41.6 2.6 18 2-19 8-25 (194)
455 cd03216 ABC_Carb_Monos_I This 78.3 3.5 7.6E-05 37.9 4.8 109 2-117 35-149 (163)
456 COG3265 GntK Gluconate kinase 78.3 6.7 0.00014 34.8 6.0 19 2-20 4-22 (161)
457 PRK06731 flhF flagellar biosyn 78.2 11 0.00025 37.7 8.7 81 2-84 84-166 (270)
458 PRK13232 nifH nitrogenase redu 78.2 1.6 3.5E-05 44.2 2.7 17 2-18 10-26 (273)
459 PF14532 Sigma54_activ_2: Sigm 78.1 0.81 1.8E-05 40.8 0.5 39 72-110 69-110 (138)
460 PF03969 AFG1_ATPase: AFG1-lik 78.1 1.8 3.9E-05 45.5 3.1 94 2-110 71-167 (362)
461 KOG0740 AAA+-type ATPase [Post 78.0 34 0.00075 36.5 12.3 63 2-84 195-257 (428)
462 PF03029 ATP_bind_1: Conserved 78.0 2.7 5.8E-05 41.4 4.1 29 1-31 4-32 (238)
463 cd02117 NifH_like This family 77.9 1.7 3.7E-05 42.1 2.7 30 2-33 9-38 (212)
464 TIGR00150 HI0065_YjeE ATPase, 77.9 1.5 3.2E-05 38.5 2.0 17 2-18 31-47 (133)
465 COG1419 FlhF Flagellar GTP-bin 77.8 13 0.00027 39.2 8.9 78 2-82 212-291 (407)
466 smart00369 LRR_TYP Leucine-ric 77.6 1.9 4.2E-05 25.4 1.9 19 351-369 2-20 (26)
467 smart00370 LRR Leucine-rich re 77.6 1.9 4.2E-05 25.4 1.9 19 351-369 2-20 (26)
468 TIGR01243 CDC48 AAA family ATP 77.5 3.1 6.6E-05 48.9 5.1 63 2-84 221-283 (733)
469 PRK04040 adenylate kinase; Pro 77.5 1.6 3.6E-05 41.2 2.4 18 1-18 10-27 (188)
470 COG4608 AppF ABC-type oligopep 77.5 5.9 0.00013 39.1 6.1 79 2-84 48-139 (268)
471 KOG4252 GTP-binding protein [S 77.5 2.2 4.8E-05 38.5 3.0 30 2-32 29-58 (246)
472 KOG0735 AAA+-type ATPase [Post 77.4 5.4 0.00012 44.6 6.4 63 2-84 710-772 (952)
473 PRK10646 ADP-binding protein; 77.2 1.6 3.4E-05 39.4 2.0 17 3-19 38-54 (153)
474 CHL00072 chlL photochlorophyll 77.2 3 6.6E-05 42.6 4.4 30 2-33 9-38 (290)
475 PLN02924 thymidylate kinase 77.2 12 0.00026 36.4 8.2 44 2-46 25-68 (220)
476 PRK05439 pantothenate kinase; 76.9 8.3 0.00018 39.5 7.3 70 2-73 95-166 (311)
477 cd03110 Fer4_NifH_child This p 76.8 1.5 3.3E-05 41.1 1.9 25 2-32 9-33 (179)
478 COG1875 NYN ribonuclease and A 76.8 5.4 0.00012 40.9 5.8 36 72-108 351-386 (436)
479 PRK07165 F0F1 ATP synthase sub 76.7 6.5 0.00014 42.8 6.8 79 2-84 152-245 (507)
480 cd02034 CooC The accessory pro 76.7 2.2 4.8E-05 36.6 2.7 31 1-33 7-37 (116)
481 PRK00279 adk adenylate kinase; 76.6 9.3 0.0002 37.0 7.5 18 1-18 8-25 (215)
482 cd03247 ABCC_cytochrome_bd The 76.3 5.4 0.00012 37.3 5.5 49 64-113 109-160 (178)
483 KOG0726 26S proteasome regulat 76.3 5.8 0.00012 39.2 5.6 19 2-20 228-246 (440)
484 PRK06820 type III secretion sy 76.3 10 0.00022 40.9 8.1 79 2-84 172-265 (440)
485 PRK05917 DNA polymerase III su 76.2 12 0.00025 37.9 8.1 40 71-110 94-135 (290)
486 cd00464 SK Shikimate kinase (S 76.2 1.9 4.1E-05 39.1 2.4 18 1-18 7-24 (154)
487 cd03281 ABC_MSH5_euk MutS5 hom 76.1 3.6 7.8E-05 39.8 4.4 47 71-117 107-161 (213)
488 TIGR03453 partition_RepA plasm 76.1 3.6 7.8E-05 44.1 4.8 35 2-38 114-148 (387)
489 PRK07960 fliI flagellum-specif 76.0 4.2 9.1E-05 43.7 5.1 79 2-84 184-277 (455)
490 TIGR02546 III_secr_ATP type II 76.0 9.4 0.0002 41.2 7.8 79 2-84 154-247 (422)
491 TIGR01968 minD_bact septum sit 76.0 2.9 6.4E-05 41.9 3.9 30 2-33 11-40 (261)
492 KOG0739 AAA+-type ATPase [Post 75.9 5.3 0.00012 39.6 5.3 62 2-83 175-236 (439)
493 PTZ00301 uridine kinase; Provi 75.7 1.9 4.1E-05 41.5 2.3 17 2-18 12-28 (210)
494 CHL00206 ycf2 Ycf2; Provisiona 75.7 18 0.00039 45.8 10.7 18 2-19 1639-1656(2281)
495 cd02024 NRK1 Nicotinamide ribo 75.7 1.9 4.2E-05 40.5 2.2 16 2-17 8-23 (187)
496 TIGR03600 phage_DnaB phage rep 75.6 12 0.00026 40.6 8.8 44 2-48 203-246 (421)
497 PRK06547 hypothetical protein; 75.6 2 4.4E-05 39.9 2.4 17 1-17 23-39 (172)
498 PRK05022 anaerobic nitric oxid 75.6 7.5 0.00016 43.4 7.3 32 2-35 219-250 (509)
499 PRK13946 shikimate kinase; Pro 75.5 2 4.4E-05 40.5 2.4 18 1-18 18-35 (184)
500 TIGR03575 selen_PSTK_euk L-ser 75.5 3.3 7.1E-05 43.0 4.1 31 1-32 7-37 (340)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-73 Score=645.42 Aligned_cols=616 Identities=27% Similarity=0.426 Sum_probs=438.6
Q ss_pred CCCCcHHHHHHHHHHHHh-hhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchh---hHHHHHHHHHHHHcCCcEEE
Q 048566 1 MGGIGKTTLVKKVARQAM-EDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEV---ESSRASRIFERLRNEKKILV 76 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~-~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~~~l~~~~r~Ll 76 (760)
|||+||||||+.++|+.. ++++||.++||.||+.++...++++|++.++.....+. ..+.+..+.+.|. +|||+|
T Consensus 187 MGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~-~krfll 265 (889)
T KOG4658|consen 187 MGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE-GKRFLL 265 (889)
T ss_pred CCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc-cCceEE
Confidence 999999999999999988 99999999999999999999999999999987544332 2466777888887 599999
Q ss_pred EEECCCCccccccccccccCCCCCcEEEEeeCCH--------------------HHHHHHHHHHhCCC--cCChhhHHHH
Q 048566 77 VLDNIWKHLDLETVGIPFGEDHKGCKLLLTARDR--------------------KEAWRLFKMMVGDD--VENRELKSTA 134 (760)
Q Consensus 77 VlDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~--------------------~~a~~Lf~~~a~~~--~~~~~~~~~~ 134 (760)
||||||+..+|+.+..++|...+||||++|||++ +|||+||++.|+.. ...+.++++|
T Consensus 266 vLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~la 345 (889)
T KOG4658|consen 266 VLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELA 345 (889)
T ss_pred EEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHH
Confidence 9999999999999999999999999999999999 99999999999553 2334589999
Q ss_pred HHHHHHhCCcchHHHHHHHHHccC-ChHHHHHHHHHhcCCCCCCcCCchhHHHHHHHHhhhcCChhhHhHHHhhhccCcc
Q 048566 135 IDVARACGGLPIALTTVAMALRSK-SLHGWKVSLGELRTPSMDNFEGVSAETYSSIELSFNHLKDEQLKKIFLLCSQMET 213 (760)
Q Consensus 135 ~~i~~~c~glPLai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp~ 213 (760)
++|+++|+|+|||++++|+.|+.+ +..+|+.+++.+.+....+.+++...++.++++|||.||++ +|.||+|||+||+
T Consensus 346 k~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPE 424 (889)
T KOG4658|consen 346 KEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPE 424 (889)
T ss_pred HHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCc
Confidence 999999999999999999999999 78899999999988766666777889999999999999965 9999999999999
Q ss_pred cccHH--HHHHHHHhcCccccccchHHHHHHHHHHHHHHHhcccccccC----CCceeccHHHHHHHHHHhh-----ccc
Q 048566 214 RILTL--DLFKYSMGLGIFKRVNKMEDARDKLYALVHELRNSCLLIEDS----NEQFSMHDVVRDVAISIGC-----RDQ 282 (760)
Q Consensus 214 ~~~~~--~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~----~~~~~mH~lv~~~~~~~~~-----~e~ 282 (760)
|+.++ .++.+|+||||+.+....+.+++.+++++.+|++++|++... ..+|+|||+||++|.++++ ++.
T Consensus 425 D~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~ 504 (889)
T KOG4658|consen 425 DYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN 504 (889)
T ss_pred ccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc
Confidence 99987 999999999999987777789999999999999999999863 3689999999999999998 666
Q ss_pred ccEEecCCccccccchhccccceEEEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCC-
Q 048566 283 HGILVGNEDVWDWRNEDALRKCKAITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRM- 361 (760)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~- 361 (760)
.++ ..+.+....++...+...|++++.++....++...++++|++|.+..+...+ ..++..+|..++.||+|||++|
T Consensus 505 ~iv-~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l-~~is~~ff~~m~~LrVLDLs~~~ 582 (889)
T KOG4658|consen 505 QIV-SDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWL-LEISGEFFRSLPLLRVLDLSGNS 582 (889)
T ss_pred eEE-ECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhh-hhcCHHHHhhCcceEEEECCCCC
Confidence 333 2333444455556678899999998877889999999999999999543212 2478888999999999999975
Q ss_pred CCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccceeecccCc-ccccchhhhcCCCCCEEeccccccccccCccc
Q 048566 362 QFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVLSFLMSD-IMQLPEELGQLNKLRLLDLTNCFHLKVIAPNL 439 (760)
Q Consensus 362 ~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~ 439 (760)
.+.++|.+|++|.+||||+++++.+.. |.++++|+.|.+|++..+. +..+|.....|++|++|.+..
T Consensus 583 ~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~----------- 651 (889)
T KOG4658|consen 583 SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR----------- 651 (889)
T ss_pred ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec-----------
Confidence 456888888887777777777776655 5566666666666666553 223333333355555555433
Q ss_pred ccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCc
Q 048566 440 ISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPK 519 (760)
Q Consensus 440 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~ 519 (760)
... ..+.....++.++++|+.+.+................|.++..
T Consensus 652 --------------s~~---------~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~----------- 697 (889)
T KOG4658|consen 652 --------------SAL---------SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQ----------- 697 (889)
T ss_pred --------------ccc---------ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhH-----------
Confidence 210 0122334555556666655554322200000011111111100
Q ss_pred cccccccCCCCcccccccccccceeeeccCccccccccccCccceeEEEeccccCccccccccCccccCCCcEEeeccCC
Q 048566 520 CVRQDWFQSQPHFSINSDRKSLRALKLKLDFMDICSMKLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNP 599 (760)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 599 (760)
.+.+.. +...........+.+|+.|.|.+|.
T Consensus 698 ----------------------------------------------~l~~~~---~~~~~~~~~~~~l~~L~~L~i~~~~ 728 (889)
T KOG4658|consen 698 ----------------------------------------------SLSIEG---CSKRTLISSLGSLGNLEELSILDCG 728 (889)
T ss_pred ----------------------------------------------hhhhcc---cccceeecccccccCcceEEEEcCC
Confidence 000000 1111111223457777777777776
Q ss_pred CceeeecCCCCcccc-cccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEe
Q 048566 600 DIFCIVDSREMVACD-AFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVV 678 (760)
Q Consensus 600 ~l~~i~~~~~~~~~~-~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~ 678 (760)
..+............ .||++..+.+.+|..++...+ ....|+|+.|.+..|+.++++.+ ....+..++++.+.
T Consensus 729 ~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~----~~f~~~L~~l~l~~~~~~e~~i~--~~k~~~~l~~~i~~ 802 (889)
T KOG4658|consen 729 ISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW----LLFAPHLTSLSLVSCRLLEDIIP--KLKALLELKELILP 802 (889)
T ss_pred CchhhcccccccchhhhHHHHHHHHhhccccccccch----hhccCcccEEEEecccccccCCC--HHHHhhhcccEEec
Confidence 543222111111122 277888888888887777654 23468889999988888887655 33444444432221
Q ss_pred cCCcchhhh---ccccccccccccccccccCeeecCCCcccccccc
Q 048566 679 NCSKMKEIF---AIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCR 721 (760)
Q Consensus 679 ~c~~L~~l~---~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 721 (760)
++++.... ...+..+....-..++.|..+.+..||++.++|.
T Consensus 803 -f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 803 -FNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred -ccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcc
Confidence 11222221 0011111111223345577788888888877643
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8e-61 Score=573.45 Aligned_cols=634 Identities=17% Similarity=0.226 Sum_probs=448.4
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEe---cCC-----------CC-HHHHHHHHHHHhCccccchhhHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEV---SQI-----------PD-IKRIQQEIAEKLGLELREEVESSRASRIF 65 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~---~~~-----------~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 65 (760)
|||+||||||+++|++.. .+|++.+|++. +.. ++ ...++++++.++....... ......++
T Consensus 215 ~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~ 290 (1153)
T PLN03210 215 SSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIK--IYHLGAME 290 (1153)
T ss_pred CCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcc--cCCHHHHH
Confidence 899999999999999876 56999888752 111 11 2234555555543322111 01124566
Q ss_pred HHHHcCCcEEEEEECCCCccccccccccccCCCCCcEEEEeeCCH-------------------HHHHHHHHHHhCC-Cc
Q 048566 66 ERLRNEKKILVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTARDR-------------------KEAWRLFKMMVGD-DV 125 (760)
Q Consensus 66 ~~l~~~~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~-------------------~~a~~Lf~~~a~~-~~ 125 (760)
+++. ++|+||||||||+.++|+.+.....+.++||+||||||++ ++||+||+++|+. ..
T Consensus 291 ~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~ 369 (1153)
T PLN03210 291 ERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS 369 (1153)
T ss_pred HHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC
Confidence 7777 5999999999999999999988777889999999999998 7999999999954 44
Q ss_pred CChhhHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHhcCCCCCCcCCchhHHHHHHHHhhhcCChhhHhHHH
Q 048566 126 ENRELKSTAIDVARACGGLPIALTTVAMALRSKSLHGWKVSLGELRTPSMDNFEGVSAETYSSIELSFNHLKDEQLKKIF 205 (760)
Q Consensus 126 ~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cf 205 (760)
+++++++++++|+++|+|+||||+++|++|++++..+|++++++++... +.++.+++++||++|++++.|.||
T Consensus 370 ~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~F 442 (1153)
T PLN03210 370 PPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL-------DGKIEKTLRVSYDGLNNKKDKAIF 442 (1153)
T ss_pred CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc-------cHHHHHHHHHhhhccCccchhhhh
Confidence 5667899999999999999999999999999999999999999987532 457999999999999864349999
Q ss_pred hhhccCcccccHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHhcccccccCCCceeccHHHHHHHHHHhhcccccE
Q 048566 206 LLCSQMETRILTLDLFKYSMGLGIFKRVNKMEDARDKLYALVHELRNSCLLIEDSNEQFSMHDVVRDVAISIGCRDQHGI 285 (760)
Q Consensus 206 l~~a~fp~~~~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~mH~lv~~~~~~~~~~e~~~~ 285 (760)
+++|+||.+..++. +..|.+.+.... ...++.|+++||++.. .+.+.||+++|+||+++++++.. .
T Consensus 443 l~ia~ff~~~~~~~-v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~-~ 508 (1153)
T PLN03210 443 RHIACLFNGEKVND-IKLLLANSDLDV-----------NIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSN-E 508 (1153)
T ss_pred heehhhcCCCCHHH-HHHHHHhcCCCc-----------hhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcC-C
Confidence 99999998887664 556666554321 1128899999999874 46899999999999999977641 1
Q ss_pred EecCCccccccc---------hhccccceEEEeecCCCCCC--C--CCCCCCCccEEEeeccC----CcccccCCchhhc
Q 048566 286 LVGNEDVWDWRN---------EDALRKCKAITLRYDSNRHF--P--EGLECPNLEFLCISLKD----SSLEINIPGNFFI 348 (760)
Q Consensus 286 ~~~~~~~~~~~~---------~~~~~~~r~l~l~~~~~~~~--~--~~~~~~~Lr~L~l~~~~----~~~~~~~~~~~~~ 348 (760)
.... ...|.. ......++++++......++ . ...++++|+.|.+.... +.....+|.++..
T Consensus 509 ~~~r--~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~ 586 (1153)
T PLN03210 509 PGER--EFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDY 586 (1153)
T ss_pred CCcc--eeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhh
Confidence 1111 111111 12235677777762221222 1 13478899999886431 1222346665533
Q ss_pred CCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccceeecccC-cccccchhhhcCCCCCEEec
Q 048566 349 GMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVLSFLMS-DIMQLPEELGQLNKLRLLDL 426 (760)
Q Consensus 349 ~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l 426 (760)
-..+||.|++.++++..+|..+ .+.+|+.|+++++.+.. +.++..+.+|++|+++++ .+..+| .++.+++|+.|++
T Consensus 587 lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L 664 (1153)
T PLN03210 587 LPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKL 664 (1153)
T ss_pred cCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEe
Confidence 3356888888888888888776 56788888888888777 567788888888888876 466776 4777888888888
Q ss_pred cccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEecc-CCCCCcchhccccce
Q 048566 427 TNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKN-DSILPEGFLARKLER 505 (760)
Q Consensus 427 ~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~L~~ 505 (760)
++|..+..+|.. ++++++|+.|++++|.....++ ..+ ++++|+.|+++++. ...+|. ...+|+.
T Consensus 665 ~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp-----------~~i-~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~ 729 (1153)
T PLN03210 665 SDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILP-----------TGI-NLKSLYRLNLSGCSRLKSFPD--ISTNISW 729 (1153)
T ss_pred cCCCCccccchh-hhccCCCCEEeCCCCCCcCccC-----------CcC-CCCCCCEEeCCCCCCcccccc--ccCCcCe
Confidence 888878777765 7888888888888887654332 222 57788888887764 233332 2367888
Q ss_pred eEEEecCCCCCCCccccccccCCCCcccccccccccceeeeccCc--------cccccccccCccceeEEEeccccCccc
Q 048566 506 FKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLRALKLKLDF--------MDICSMKLQGINNVECLWLDKLQGIGD 577 (760)
Q Consensus 506 L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~--------~~l~~l~~~~l~~L~~L~l~~~~~~~~ 577 (760)
|++..+.+..+|... ...+++.|.+.... ..+..+.....++|+.|.+.++.....
T Consensus 730 L~L~~n~i~~lP~~~----------------~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~ 793 (1153)
T PLN03210 730 LDLDETAIEEFPSNL----------------RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE 793 (1153)
T ss_pred eecCCCccccccccc----------------cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc
Confidence 888777765554311 12233333332211 001111112236788888877765555
Q ss_pred cccccCccccCCCcEEeeccCCCceeeecCCCCcccccccccchhhhcccccccccccccccccccCCccEEEEecCCCC
Q 048566 578 VLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKL 657 (760)
Q Consensus 578 ~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L 657 (760)
.+.. ++++++|+.|++++|..++.+|.. ..+++|+.|++++|..+..++. ..++|+.|++.+ ..+
T Consensus 794 lP~s--i~~L~~L~~L~Ls~C~~L~~LP~~------~~L~sL~~L~Ls~c~~L~~~p~------~~~nL~~L~Ls~-n~i 858 (1153)
T PLN03210 794 LPSS--IQNLHKLEHLEIENCINLETLPTG------INLESLESLDLSGCSRLRTFPD------ISTNISDLNLSR-TGI 858 (1153)
T ss_pred cChh--hhCCCCCCEEECCCCCCcCeeCCC------CCccccCEEECCCCCccccccc------cccccCEeECCC-CCC
Confidence 4333 456889999999999888887632 2578899999999988876643 246788888877 467
Q ss_pred CcccchhhhhccCCCcEEEEecCCcchhhhccccccccccccccccccCeeecCCCcccccccc
Q 048566 658 SNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCR 721 (760)
Q Consensus 658 ~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 721 (760)
+.+|. .+..+++|+.|++.+|++++.++. ....+++|+.|++.+|++|+.+..
T Consensus 859 ~~iP~--si~~l~~L~~L~L~~C~~L~~l~~---------~~~~L~~L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 859 EEVPW--WIEKFSNLSFLDMNGCNNLQRVSL---------NISKLKHLETVDFSDCGALTEASW 911 (1153)
T ss_pred ccChH--HHhcCCCCCEEECCCCCCcCccCc---------ccccccCCCeeecCCCcccccccC
Confidence 77764 677888899999988888888763 456678888888888888876654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.1e-37 Score=321.32 Aligned_cols=230 Identities=33% Similarity=0.549 Sum_probs=184.2
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcccc----chhhHHHHHHHHHHHHcCCcEEE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR----EEVESSRASRIFERLRNEKKILV 76 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~l~~~~r~Ll 76 (760)
|||+||||||+++|++...+++|+.++|+++++..+...++++|+++++.... ..+..+....+.+.+. ++++||
T Consensus 27 ~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~~~~Ll 105 (287)
T PF00931_consen 27 MGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLK-DKRCLL 105 (287)
T ss_dssp STTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHC-CTSEEE
T ss_pred CCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhc-ccccee
Confidence 79999999999999997778999999999999999999999999999988743 2344556778888887 489999
Q ss_pred EEECCCCccccccccccccCCCCCcEEEEeeCCH--------------------HHHHHHHHHHhCCCc--CChhhHHHH
Q 048566 77 VLDNIWKHLDLETVGIPFGEDHKGCKLLLTARDR--------------------KEAWRLFKMMVGDDV--ENRELKSTA 134 (760)
Q Consensus 77 VlDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~--------------------~~a~~Lf~~~a~~~~--~~~~~~~~~ 134 (760)
||||||+...|+.+...++....|++||||||+. +||++||++.++... ..+..++.+
T Consensus 106 VlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~ 185 (287)
T PF00931_consen 106 VLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLA 185 (287)
T ss_dssp EEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHH
T ss_pred eeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999988888888899999999997 899999999995433 445667889
Q ss_pred HHHHHHhCCcchHHHHHHHHHccC-ChHHHHHHHHHhcCCCCCCcCCchhHHHHHHHHhhhcCChhhHhHHHhhhccCcc
Q 048566 135 IDVARACGGLPIALTTVAMALRSK-SLHGWKVSLGELRTPSMDNFEGVSAETYSSIELSFNHLKDEQLKKIFLLCSQMET 213 (760)
Q Consensus 135 ~~i~~~c~glPLai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp~ 213 (760)
++|+++|+|+||||+++|++|+.+ +..+|+.+++++...... ..+....++.++.+||+.||++ +|+||+|||+||+
T Consensus 186 ~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~ 263 (287)
T PF00931_consen 186 KEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPE 263 (287)
T ss_dssp HHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-cccccccccccceechhcCCcc-HHHHHhhCcCCCC
Confidence 999999999999999999999766 788999999887654322 2224688999999999999997 7999999999998
Q ss_pred cccH--HHHHHHHHhcCccccc
Q 048566 214 RILT--LDLFKYSMGLGIFKRV 233 (760)
Q Consensus 214 ~~~~--~~li~~w~a~g~i~~~ 233 (760)
++.+ +.++++|+++|++...
T Consensus 264 ~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 264 GVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp TS-EEHHHHHHHHTT-HHTC--
T ss_pred CceECHHHHHHHHHHCCCCccc
Confidence 8764 5999999999998754
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=6.7e-22 Score=238.55 Aligned_cols=129 Identities=26% Similarity=0.374 Sum_probs=58.2
Q ss_pred CCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCC-CChhhhhhhccCCeeEecCCCCCC--cccccccccc
Q 048566 322 ECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFS-SFPSSIDLLVNLHTLCLDQSALGD--IAIIGKLKNL 398 (760)
Q Consensus 322 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L 398 (760)
.+++||+|+++ ++.+.+.+|. ..+++|++|++++|.+. .+|..++++++|++|++++|.+.. |..++++++|
T Consensus 116 ~l~~L~~L~Ls--~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 190 (968)
T PLN00113 116 TSSSLRYLNLS--NNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190 (968)
T ss_pred cCCCCCEEECc--CCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCC
Confidence 44555555554 2333323332 23444555555555443 344445555555555555554332 3444455555
Q ss_pred ceeecccCccc-ccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEcccccc
Q 048566 399 EVLSFLMSDIM-QLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFI 456 (760)
Q Consensus 399 ~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 456 (760)
++|++++|.+. .+|..++++++|++|++++|. +....+..++++++|++|++++|.+
T Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN-LSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred CeeeccCCCCcCcCChHHcCcCCccEEECcCCc-cCCcCChhHhcCCCCCEEECcCcee
Confidence 55555554433 334444555555555554442 2222222244455555555544443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=7.4e-22 Score=238.14 Aligned_cols=197 Identities=26% Similarity=0.318 Sum_probs=118.2
Q ss_pred cccceEEEeecC-CCCCCCCC-CCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCC-CChhhhhhhccCC
Q 048566 301 LRKCKAITLRYD-SNRHFPEG-LECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFS-SFPSSIDLLVNLH 377 (760)
Q Consensus 301 ~~~~r~l~l~~~-~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~ 377 (760)
..+++.+.+.++ ....+|.. .++++|++|+++ ++.+.+.+|.. +.++++|++|++++|.+. .+|..++++++|+
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~--~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA--SNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeecc--CCCCcCcCChH-HcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 345666666633 22344443 366777777776 34444345543 367777777777777765 5667777777777
Q ss_pred eeEecCCCCCC--ccccccccccceeecccCccc-ccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEcccc
Q 048566 378 TLCLDQSALGD--IAIIGKLKNLEVLSFLMSDIM-QLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNC 454 (760)
Q Consensus 378 ~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 454 (760)
+|++++|.+.. |..++++++|++|++++|.+. .+|..+.++++|++|++++| .+....+..+.++++|++|++++|
T Consensus 240 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN-SLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred EEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC-eeccCCChhHcCCCCCcEEECCCC
Confidence 77777777643 556777777777777777665 45666777777777777776 343333333667777777777766
Q ss_pred ccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCC-CCCcch-hccccceeEEEecC
Q 048566 455 FIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDS-ILPEGF-LARKLERFKISIGN 512 (760)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~ 512 (760)
.+.+. .+..+..+++|+.|+++++... .+|... .+.+|+.|+++.|.
T Consensus 319 ~~~~~-----------~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 319 NFTGK-----------IPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred ccCCc-----------CChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 55422 2344556666666666655543 233222 23556666665554
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.9e-21 Score=234.23 Aligned_cols=371 Identities=19% Similarity=0.263 Sum_probs=269.5
Q ss_pred cccceEEEeecCC-------CCCCCCCC-CC-CCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhh
Q 048566 301 LRKCKAITLRYDS-------NRHFPEGL-EC-PNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSID 371 (760)
Q Consensus 301 ~~~~r~l~l~~~~-------~~~~~~~~-~~-~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~ 371 (760)
.++++.+.+.... ...+|..+ .+ ++||.|.+.+ +.+. .+|..+ ...+|+.|++.++.+..+|..+.
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~--~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDK--YPLR-CMPSNF--RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecC--CCCC-CCCCcC--CccCCcEEECcCccccccccccc
Confidence 4566666664221 12344433 23 4699999984 3443 477765 57899999999999999999999
Q ss_pred hhccCCeeEecCCC-CCCccccccccccceeecccC-cccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEE
Q 048566 372 LLVNLHTLCLDQSA-LGDIAIIGKLKNLEVLSFLMS-DIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEEL 449 (760)
Q Consensus 372 ~l~~L~~L~l~~~~-l~~~~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L 449 (760)
.+++|++|+++++. +..++.++.+++|++|++++| .+..+|..++++++|+.|++++|..++.+|.. + ++++|+.|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L 709 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRL 709 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEE
Confidence 99999999999886 666778999999999999998 67899999999999999999999999999985 3 89999999
Q ss_pred EccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCCC
Q 048566 450 YMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQSQ 529 (760)
Q Consensus 450 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~ 529 (760)
++++|.....++ . ...+|+.|++.++....+|....+++|+.|.+..+....+.. .....
T Consensus 710 ~Lsgc~~L~~~p-----------~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~------~~~~l 769 (1153)
T PLN03210 710 NLSGCSRLKSFP-----------D---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE------RVQPL 769 (1153)
T ss_pred eCCCCCCccccc-----------c---ccCCcCeeecCCCccccccccccccccccccccccchhhccc------ccccc
Confidence 999997653331 1 245789999999998888887778889888886543222210 00000
Q ss_pred CcccccccccccceeeeccCccccccc--cccCccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecC
Q 048566 530 PHFSINSDRKSLRALKLKLDFMDICSM--KLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDS 607 (760)
Q Consensus 530 ~~~~~~~~~~~l~~l~l~~~~~~l~~l--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 607 (760)
... .....++|+.|.+..+. .+..+ .+..+++|+.|.+.+|..+...+.. .++++|+.|++++|..+..++
T Consensus 770 ~~~-~~~~~~sL~~L~Ls~n~-~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p-- 842 (1153)
T PLN03210 770 TPL-MTMLSPSLTRLFLSDIP-SLVELPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFP-- 842 (1153)
T ss_pred chh-hhhccccchheeCCCCC-CccccChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCcccccc--
Confidence 000 00123567778776654 22222 2556788999999888776655433 258999999999999887664
Q ss_pred CCCcccccccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhh
Q 048566 608 REMVACDAFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIF 687 (760)
Q Consensus 608 ~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~ 687 (760)
...++|+.|++.+. .++.++. ..+.+++|+.|++.+|++|+.++. .+..+++|+.+++++|++|++++
T Consensus 843 ------~~~~nL~~L~Ls~n-~i~~iP~---si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 843 ------DISTNISDLNLSRT-GIEEVPW---WIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ------ccccccCEeECCCC-CCccChH---HHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCccccccc
Confidence 23468999999874 5666654 466799999999999999999876 56789999999999999998775
Q ss_pred ccccc----cccccccccccccCeeecCCCcccc
Q 048566 688 AIGEE----VDNAIEKIEFAQLRSLSLGNLPEVT 717 (760)
Q Consensus 688 ~~~~~----~~~~~~~~~l~~L~~L~l~~c~~L~ 717 (760)
..... .........+|....+.+.+|.+|.
T Consensus 911 l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 911 WNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD 944 (1153)
T ss_pred CCCCchhhhhhcccccccCCchhccccccccCCC
Confidence 32100 0000112345666667788888775
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=2.5e-22 Score=206.33 Aligned_cols=203 Identities=22% Similarity=0.300 Sum_probs=128.6
Q ss_pred cccceEEEeecCCCCCCC-CCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCee
Q 048566 301 LRKCKAITLRYDSNRHFP-EGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTL 379 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 379 (760)
..++.|+++.++....+. +...+|.||++.+..+.-.-. .+|..+| .+..|.+|||++|.+.+.|..+.+-+++-+|
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKns-GiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNS-GIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccC-CCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 456667777644434433 344677777777764222222 3666664 6777777777777777777777777777777
Q ss_pred EecCCCCCC-c-cccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccc
Q 048566 380 CLDQSALGD-I-AIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 380 ~l~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 457 (760)
+|++|+|.. | +-+-+|..|-+|||++|++..+|+.+..|.+|++|++++|+ +..+....+-.+++|++|.+++...+
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccch
Confidence 777777766 4 33566777777777777777777777777777777777763 33333222445667777777665433
Q ss_pred hhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcch-hccccceeEEEecCCCCC
Q 048566 458 WEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGF-LARKLERFKISIGNESFM 516 (760)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l 516 (760)
....+..+..|.+|+.++++.|+...+|+-. .+.+|++|+++.|.++.+
T Consensus 211 ----------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 211 ----------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred ----------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee
Confidence 2234555666667777777777666666544 346666666666654433
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.79 E-value=5.7e-20 Score=188.10 Aligned_cols=319 Identities=19% Similarity=0.190 Sum_probs=158.5
Q ss_pred CCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecCCCCCC-c-ccccccccc
Q 048566 322 ECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQSALGD-I-AIIGKLKNL 398 (760)
Q Consensus 322 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~-~-~~~~~l~~L 398 (760)
++++|+.+.+. .|.++ .+|... ....+|..|+|.+|.+.++ .+.+..++.||.|||+.|.+.. + +++..=.++
T Consensus 100 nl~nLq~v~l~--~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 100 NLPNLQEVNLN--KNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI 175 (873)
T ss_pred cCCcceeeeec--cchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence 55555555554 33333 344322 3334455555555555544 3445555556666666555554 1 444444556
Q ss_pred ceeecccCcccccch-hhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcC
Q 048566 399 EVLSFLMSDIMQLPE-ELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMH 477 (760)
Q Consensus 399 ~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 477 (760)
++|+|++|+|+.+-. .+..+.+|..|.++.| .+..+|...+.+|++|+.|++..|.+.. ..-..+..
T Consensus 176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iri-----------ve~ltFqg 243 (873)
T KOG4194|consen 176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRI-----------VEGLTFQG 243 (873)
T ss_pred eEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceee-----------ehhhhhcC
Confidence 666666665555432 3445556666666665 5666666555556666666666555430 00223455
Q ss_pred CCCCCEEEEEeccCCCCCcchh--ccccceeEEEecCCCCCCCccccccccCCCCcccccccccccceeeeccCcccccc
Q 048566 478 LPRLTTLEIDVKNDSILPEGFL--ARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLRALKLKLDFMDICS 555 (760)
Q Consensus 478 l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~ 555 (760)
|++|+.|.+..|++..+...++ +.+++.|++..|++..... .|. -....|+.|+++.+. |..
T Consensus 244 L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~-----g~l---------fgLt~L~~L~lS~Na--I~r 307 (873)
T KOG4194|consen 244 LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE-----GWL---------FGLTSLEQLDLSYNA--IQR 307 (873)
T ss_pred chhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc-----ccc---------cccchhhhhccchhh--hhe
Confidence 6666666666666555555553 3666666666665433311 111 133345555555443 222
Q ss_pred cc---ccCccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCcccccccccchhhhcccccccc
Q 048566 556 MK---LQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMER 632 (760)
Q Consensus 556 l~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~ 632 (760)
+. .+..++|+.|.++...-..- ....+..+..|++|+++++ .+..+. -.....+.+|++|+++.-.---.
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l--~~~sf~~L~~Le~LnLs~N-si~~l~----e~af~~lssL~~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRL--DEGSFRVLSQLEELNLSHN-SIDHLA----EGAFVGLSSLHKLDLRSNELSWC 380 (873)
T ss_pred eecchhhhcccceeEeccccccccC--ChhHHHHHHHhhhhccccc-chHHHH----hhHHHHhhhhhhhcCcCCeEEEE
Confidence 21 22235555555544322111 1112233556666666543 233321 11234456666666664221001
Q ss_pred cccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCC
Q 048566 633 VCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCS 681 (760)
Q Consensus 633 ~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 681 (760)
+......+..+++|+.|.+.+ ++++.++. ..+..+++||+|++.+++
T Consensus 381 IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 381 IEDAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDNA 427 (873)
T ss_pred EecchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCCc
Confidence 111111233477777777776 56676654 244567777777777663
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=2.3e-19 Score=183.70 Aligned_cols=351 Identities=17% Similarity=0.182 Sum_probs=199.8
Q ss_pred CCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCc--cccccccccce
Q 048566 323 CPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDI--AIIGKLKNLEV 400 (760)
Q Consensus 323 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~ 400 (760)
.+..++|+++ +|.+. ++.-.+|.++++|+.+++.+|.++.+|.......||+.|+|.+|.|..+ +.+.-+..|+.
T Consensus 77 p~~t~~Ldls--nNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs 153 (873)
T KOG4194|consen 77 PSQTQTLDLS--NNKLS-HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS 153 (873)
T ss_pred ccceeeeecc--ccccc-cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence 3456677777 45554 4555566777777777777777777777666667777777777777663 45666777777
Q ss_pred eecccCcccccch-hhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCC
Q 048566 401 LSFLMSDIMQLPE-ELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLP 479 (760)
Q Consensus 401 L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 479 (760)
|||+.|.|.++|. .+.+=.++++|++++| .+..+..+.+..+.+|-+|.+++|.+.. ..+..+++|+
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNritt-----------Lp~r~Fk~L~ 221 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITT-----------LPQRSFKRLP 221 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccc-----------cCHHHhhhcc
Confidence 7777777777663 3444467777777776 5666666667777777777777776641 2245666777
Q ss_pred CCCEEEEEeccCCCCCcch--hccccceeEEEecCCCCCCCccccccccCCCCcccccccccccceeeeccCcccccccc
Q 048566 480 RLTTLEIDVKNDSILPEGF--LARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLRALKLKLDFMDICSMK 557 (760)
Q Consensus 480 ~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l~ 557 (760)
+|+.|++..|.+....... ++.+|+.|.+..|++..+..... -....++.++|..+. +..+.
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~F--------------y~l~kme~l~L~~N~--l~~vn 285 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAF--------------YGLEKMEHLNLETNR--LQAVN 285 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcce--------------eeecccceeecccch--hhhhh
Confidence 7777777766655443332 44677777777776555532211 123344445544433 34433
Q ss_pred ccCc---cceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCcccccccccchhhhcccccccccc
Q 048566 558 LQGI---NNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVC 634 (760)
Q Consensus 558 ~~~l---~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~ 634 (760)
-.|+ ..|+.|+++...-........ .-.++|++|+++++ .++.++. .....+..|++|.+++- .+..+.
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~N-~i~~l~~----~sf~~L~~Le~LnLs~N-si~~l~ 357 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSSN-RITRLDE----GSFRVLSQLEELNLSHN-SIDHLA 357 (873)
T ss_pred cccccccchhhhhccchhhhheeecchh--hhcccceeEecccc-ccccCCh----hHHHHHHHhhhhccccc-chHHHH
Confidence 3444 444444443322111111111 12567777777744 4554421 13345566677776642 233332
Q ss_pred cccccccccCCccEEEEecCCCCCccc--chhhhhccCCCcEEEEecCCcchhhhccccccccccccccccccCeeecCC
Q 048566 635 IDRLKVESFNQLKNIEAYNCDKLSNIF--WLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGN 712 (760)
Q Consensus 635 ~~~~~~~~~~~L~~L~l~~C~~L~~l~--~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 712 (760)
.+ .+..+.+|++|++.+. .+.... .......|++|++|.+.|+ +++.++.. .+..|+.|+.|++.+
T Consensus 358 e~--af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~kr--------Afsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 358 EG--AFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKR--------AFSGLEALEHLDLGD 425 (873)
T ss_pred hh--HHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecCc-eeeecchh--------hhccCcccceecCCC
Confidence 21 1234566777766542 222110 0113355777777777776 67777653 556667777777766
Q ss_pred CccccccccCCCC
Q 048566 713 LPEVTSFCREVKT 725 (760)
Q Consensus 713 c~~L~~~~~~~~~ 725 (760)
.+ +.+|....+.
T Consensus 426 Na-iaSIq~nAFe 437 (873)
T KOG4194|consen 426 NA-IASIQPNAFE 437 (873)
T ss_pred Cc-ceeecccccc
Confidence 53 5555444444
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=9.3e-20 Score=187.61 Aligned_cols=341 Identities=17% Similarity=0.186 Sum_probs=231.3
Q ss_pred CCCccEEEeeccCCccc-ccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccce
Q 048566 323 CPNLEFLCISLKDSSLE-INIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEV 400 (760)
Q Consensus 323 ~~~Lr~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~ 400 (760)
++-+|-.+++ ++.+. +.+|.++ ..|..++.|.|..+.+..+|+.++.|.+|+.|.+++|++.. -..++.|+.|+.
T Consensus 6 LpFVrGvDfs--gNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFS--GNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRS 82 (1255)
T ss_pred cceeeccccc--CCcCCCCcCchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence 4556667777 44454 3577765 89999999999999999999999999999999999999877 577889999999
Q ss_pred eecccCccc--ccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCCh-hhhcC
Q 048566 401 LSFLMSDIM--QLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASL-DELMH 477 (760)
Q Consensus 401 L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~l~~ 477 (760)
+.++.|++. .+|..|-+|..|..||+++| .+...|.+ +.+-+++-+|++++|.+. .++ .-+.+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~-LE~AKn~iVLNLS~N~Ie------------tIPn~lfin 148 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTN-LEYAKNSIVLNLSYNNIE------------TIPNSLFIN 148 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchh-hhhhcchh-hhhhcCcEEEEcccCccc------------cCCchHHHh
Confidence 999999766 78999999999999999998 89999987 889999999999999874 122 33567
Q ss_pred CCCCCEEEEEeccCCCCCcch-hccccceeEEEecCCCCCCCccccccccCCCCcccccccccccceeeeccCccccccc
Q 048566 478 LPRLTTLEIDVKNDSILPEGF-LARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLRALKLKLDFMDICSM 556 (760)
Q Consensus 478 l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l 556 (760)
|..|-.|+++.|....+|..+ .+.+|+.|.+++|.+..+- +.....+.+|+.|.++.....+..+
T Consensus 149 LtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQ--------------LrQLPsmtsL~vLhms~TqRTl~N~ 214 (1255)
T KOG0444|consen 149 LTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQ--------------LRQLPSMTSLSVLHMSNTQRTLDNI 214 (1255)
T ss_pred hHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHH--------------HhcCccchhhhhhhcccccchhhcC
Confidence 888889999999988888776 5689999999988743210 0001123334444444332111111
Q ss_pred --cccCccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCcccccccccchhhhcccccccccc
Q 048566 557 --KLQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVC 634 (760)
Q Consensus 557 --~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~ 634 (760)
+++++.+|..+.++... +..++.. .-.+++|+.|+++++ +++.+-- ..+...+|++|+++. .+|+.++
T Consensus 215 Ptsld~l~NL~dvDlS~N~-Lp~vPec--ly~l~~LrrLNLS~N-~iteL~~-----~~~~W~~lEtLNlSr-NQLt~LP 284 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENN-LPIVPEC--LYKLRNLRRLNLSGN-KITELNM-----TEGEWENLETLNLSR-NQLTVLP 284 (1255)
T ss_pred CCchhhhhhhhhccccccC-CCcchHH--HhhhhhhheeccCcC-ceeeeec-----cHHHHhhhhhhcccc-chhccch
Confidence 25555666666665432 2222221 234889999999875 4554421 234567888888875 2333332
Q ss_pred cccccccccCCccEEEEecC------------------------CCCCcccchhhhhccCCCcEEEEecCCcchhhhccc
Q 048566 635 IDRLKVESFNQLKNIEAYNC------------------------DKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIG 690 (760)
Q Consensus 635 ~~~~~~~~~~~L~~L~l~~C------------------------~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~ 690 (760)
. ..-.+++|+.|.+.+. ++|+-+|. ++..++.|+.|.++ |..|-.+|
T Consensus 285 ~---avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPE--glcRC~kL~kL~L~-~NrLiTLP--- 355 (1255)
T KOG0444|consen 285 D---AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPE--GLCRCVKLQKLKLD-HNRLITLP--- 355 (1255)
T ss_pred H---HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCch--hhhhhHHHHHhccc-ccceeech---
Confidence 2 1122344444433321 33443332 55566666666665 33454555
Q ss_pred cccccccccccccccCeeecCCCcccccc
Q 048566 691 EEVDNAIEKIEFAQLRSLSLGNLPEVTSF 719 (760)
Q Consensus 691 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~~ 719 (760)
..+.-+|.|+.|++++.|+|..=
T Consensus 356 ------eaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 356 ------EAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred ------hhhhhcCCcceeeccCCcCccCC
Confidence 46777899999999999999753
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.65 E-value=9e-19 Score=171.77 Aligned_cols=213 Identities=22% Similarity=0.294 Sum_probs=161.9
Q ss_pred ceEEEeecCCCCCCCCCC-CCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEec
Q 048566 304 CKAITLRYDSNRHFPEGL-ECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLD 382 (760)
Q Consensus 304 ~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 382 (760)
+..+.++++....+|+.. .+..+..++.+ .+.+. .+|..+ .....|+.|+.+++.+.++|++++.+..|..|+..
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs--~n~ls-~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVS--HNKLS-ELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcc--cchHh-hccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence 444555555555666544 56677777777 45554 477665 67778888888888888888888888888888888
Q ss_pred CCCCCC-ccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhh
Q 048566 383 QSALGD-IAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVE 461 (760)
Q Consensus 383 ~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 461 (760)
+|.+.. |++++++.+|..|++.++.+.++|+..-+|+.|++||...| .++.+|+. ++.+.+|+.|++..|.+.
T Consensus 146 ~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~-lg~l~~L~~LyL~~Nki~---- 219 (565)
T KOG0472|consen 146 NNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPE-LGGLESLELLYLRRNKIR---- 219 (565)
T ss_pred ccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChh-hcchhhhHHHHhhhcccc----
Confidence 888877 78888888888888888888888887777888898888886 78888887 888888888888888764
Q ss_pred hccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchh--ccccceeEEEecCCCCCCCccccccccCCCCccccccccc
Q 048566 462 RANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFL--ARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRK 539 (760)
Q Consensus 462 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 539 (760)
.+.+|..+..|+.|++..+.+..+|.... +.++..|++..|.+.+.|.... ...
T Consensus 220 ---------~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c---------------lLr 275 (565)
T KOG0472|consen 220 ---------FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC---------------LLR 275 (565)
T ss_pred ---------cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH---------------Hhh
Confidence 23478888888888888888877776654 5888888988888777764332 344
Q ss_pred ccceeeeccCc
Q 048566 540 SLRALKLKLDF 550 (760)
Q Consensus 540 ~l~~l~l~~~~ 550 (760)
++..|+++.+.
T Consensus 276 sL~rLDlSNN~ 286 (565)
T KOG0472|consen 276 SLERLDLSNND 286 (565)
T ss_pred hhhhhcccCCc
Confidence 56667766555
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=1.3e-17 Score=163.77 Aligned_cols=199 Identities=28% Similarity=0.331 Sum_probs=165.9
Q ss_pred cccceEEEeecCCCCCCCCCC-CCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCee
Q 048566 301 LRKCKAITLRYDSNRHFPEGL-ECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTL 379 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 379 (760)
.....++.+..+....+|+.+ ....++.++++ ++.+. .+|+++ ..+-.|..|+..+|++..+|..+.++..|..|
T Consensus 90 l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s--~n~~~-el~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 90 LEALKSLNVSHNKLSELPEQIGSLISLVKLDCS--SNELK-ELPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSKL 165 (565)
T ss_pred HHHHHHhhcccchHhhccHHHhhhhhhhhhhcc--cccee-ecCchH-HHHhhhhhhhccccccccCchHHHHHHHHHHh
Confidence 344556666655557777654 78889999888 45554 477776 67888999999999999999999999999999
Q ss_pred EecCCCCCC-ccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccch
Q 048566 380 CLDQSALGD-IAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEW 458 (760)
Q Consensus 380 ~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~ 458 (760)
++.+|.++. |+..-+++.|++||...|-++.+|+.++.|.+|..|++..| ++..+|. +..+..|.+|+++.|.+.
T Consensus 166 ~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPe--f~gcs~L~Elh~g~N~i~- 241 (565)
T KOG0472|consen 166 DLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRN-KIRFLPE--FPGCSLLKELHVGENQIE- 241 (565)
T ss_pred hccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhc-ccccCCC--CCccHHHHHHHhcccHHH-
Confidence 999999988 66666699999999999999999999999999999999998 7888884 888999999998888764
Q ss_pred hhhhccccccCCChhh-hcCCCCCCEEEEEeccCCCCCcchhc-cccceeEEEecCCCCCCC
Q 048566 459 EVERANSKRSNASLDE-LMHLPRLTTLEIDVKNDSILPEGFLA-RKLERFKISIGNESFMPP 518 (760)
Q Consensus 459 ~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~ 518 (760)
..+.+ ++++++|..|++..+..+.+|..+++ ++|+.|+++.|+++.+|.
T Consensus 242 -----------~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 242 -----------MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPY 292 (565)
T ss_pred -----------hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCc
Confidence 22333 45899999999999999999888765 889999999998888773
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.60 E-value=3.4e-17 Score=177.08 Aligned_cols=362 Identities=21% Similarity=0.258 Sum_probs=196.2
Q ss_pred ceEEEeecCCCCCCCCCC-CCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEec
Q 048566 304 CKAITLRYDSNRHFPEGL-ECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLD 382 (760)
Q Consensus 304 ~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 382 (760)
++++.+.++....+|... .+++|+.|.++ .+.+. .+|.+. .++++|++|.|.++.+..+|.++..+++|++|+++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s--~n~i~-~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLS--RNYIR-SVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccc--hhhHh-hCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence 455555555555666544 57788888887 34443 356444 78888888888888888888888888888888888
Q ss_pred CCCCCC-ccccccccccceeecccC-cccccc-------------------hhhhcCCCCCEEeccccccccccCccccc
Q 048566 383 QSALGD-IAIIGKLKNLEVLSFLMS-DIMQLP-------------------EELGQLNKLRLLDLTNCFHLKVIAPNLIS 441 (760)
Q Consensus 383 ~~~l~~-~~~~~~l~~L~~L~l~~~-~i~~lp-------------------~~~~~l~~L~~L~l~~~~~l~~~~~~~i~ 441 (760)
+|.+.. |..+..+..+..++.++| ++..++ .++..+++ .|++++|. +..+. +.
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~-~~~~d---ls 196 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNE-MEVLD---LS 196 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccch-hhhhh---hh
Confidence 888776 677777777777777766 222221 12222222 25555542 22111 22
Q ss_pred CC--------------------CCCCEEEccccccchhhhhccc----------cccCCChhhhcCCCCCCEEEEEeccC
Q 048566 442 SL--------------------TRLEELYMGNCFIEWEVERANS----------KRSNASLDELMHLPRLTTLEIDVKND 491 (760)
Q Consensus 442 ~l--------------------~~L~~L~l~~~~~~~~~~~~~~----------~~~~~~~~~l~~l~~L~~L~l~~~~~ 491 (760)
++ ++|+.|..+.|.+....+.+.. ......++-++.+.+|+.++...+..
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL 276 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH
Confidence 22 3333344334433311110000 00001122333344444444444443
Q ss_pred CCCCcch-hccccceeEEEecCCCCCCCccccccccCCCCcccccccccccceeeeccCccccccccc------------
Q 048566 492 SILPEGF-LARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLRALKLKLDFMDICSMKL------------ 558 (760)
Q Consensus 492 ~~~~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l~~------------ 558 (760)
..+|... ...+|+.|.+..|.+..+|+... ....++.|+|.-+. +.++..
T Consensus 277 ~~lp~ri~~~~~L~~l~~~~nel~yip~~le---------------~~~sL~tLdL~~N~--L~~lp~~~l~v~~~~l~~ 339 (1081)
T KOG0618|consen 277 VALPLRISRITSLVSLSAAYNELEYIPPFLE---------------GLKSLRTLDLQSNN--LPSLPDNFLAVLNASLNT 339 (1081)
T ss_pred HhhHHHHhhhhhHHHHHhhhhhhhhCCCccc---------------ccceeeeeeehhcc--ccccchHHHhhhhHHHHH
Confidence 3333222 12444444444444444433322 23445555544332 111100
Q ss_pred ----------------cCccceeEEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCcccccccccchh
Q 048566 559 ----------------QGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESL 622 (760)
Q Consensus 559 ----------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L 622 (760)
..++.|..|++.+..-...++ +.+.++++|+.|+++++ ++..+|+. ....++.|+.|
T Consensus 340 ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~--p~l~~~~hLKVLhLsyN-rL~~fpas----~~~kle~LeeL 412 (1081)
T KOG0618|consen 340 LNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF--PVLVNFKHLKVLHLSYN-RLNSFPAS----KLRKLEELEEL 412 (1081)
T ss_pred HhhhhccccccccccchhhHHHHHHHHhcCcccccch--hhhccccceeeeeeccc-ccccCCHH----HHhchHHhHHH
Confidence 011223333333322222222 22356889999999865 45555422 33467778888
Q ss_pred hhcccccccccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhccccccccccccccc
Q 048566 623 ILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIEF 702 (760)
Q Consensus 623 ~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l 702 (760)
.+++ .+|+.++. ....++.|++|.... +.+..+| .+..++.|+.+|++ |.+|..+... ....-
T Consensus 413 ~LSG-NkL~~Lp~---tva~~~~L~tL~ahs-N~l~~fP---e~~~l~qL~~lDlS-~N~L~~~~l~--------~~~p~ 475 (1081)
T KOG0618|consen 413 NLSG-NKLTTLPD---TVANLGRLHTLRAHS-NQLLSFP---ELAQLPQLKVLDLS-CNNLSEVTLP--------EALPS 475 (1081)
T ss_pred hccc-chhhhhhH---HHHhhhhhHHHhhcC-Cceeech---hhhhcCcceEEecc-cchhhhhhhh--------hhCCC
Confidence 8887 45777764 445677888886643 4555554 57888999999997 6688877532 11122
Q ss_pred cccCeeecCCCccc
Q 048566 703 AQLRSLSLGNLPEV 716 (760)
Q Consensus 703 ~~L~~L~l~~c~~L 716 (760)
|+|++|+++|.+.+
T Consensus 476 p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 476 PNLKYLDLSGNTRL 489 (1081)
T ss_pred cccceeeccCCccc
Confidence 78999999988753
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.54 E-value=3.5e-16 Score=169.34 Aligned_cols=347 Identities=22% Similarity=0.262 Sum_probs=171.1
Q ss_pred CccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccceeec
Q 048566 325 NLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVLSF 403 (760)
Q Consensus 325 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l 403 (760)
+|++|+++ .+.+. .+|..+ ..+.+|+.|+++.|.+.++|.+++++.+|++|.|..|.+.. |.++..+++|++|++
T Consensus 46 ~L~~l~ls--nn~~~-~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 46 KLKSLDLS--NNQIS-SFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eeEEeecc--ccccc-cCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccccc
Confidence 36666666 33332 355444 55666666666666666666666666667777776666655 566666667777777
Q ss_pred ccCcccccchhhhcCCCCCEEeccccccccccCc------------------ccccCCCCCCEEEccccccchhhhhccc
Q 048566 404 LMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAP------------------NLISSLTRLEELYMGNCFIEWEVERANS 465 (760)
Q Consensus 404 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~------------------~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 465 (760)
++|.+...|.-+..+..+..++.++|..+..++. ..+.++++ .|++.+|.+.
T Consensus 122 S~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-------- 191 (1081)
T KOG0618|consen 122 SFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-------- 191 (1081)
T ss_pred chhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh--------
Confidence 6666666666555555555555554422222111 11222222 2455444432
Q ss_pred cccCCChhhhcCCCCCCEEEEEecc--------------------CCCCCcchhccccceeEEEecCCCCCCCccccccc
Q 048566 466 KRSNASLDELMHLPRLTTLEIDVKN--------------------DSILPEGFLARKLERFKISIGNESFMPPKCVRQDW 525 (760)
Q Consensus 466 ~~~~~~~~~l~~l~~L~~L~l~~~~--------------------~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~ 525 (760)
...+..+.+|+.|++..+. .........-.+|+.++++.+.+..+|+ |
T Consensus 192 ------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~------w 259 (1081)
T KOG0618|consen 192 ------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPE------W 259 (1081)
T ss_pred ------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchH------H
Confidence 1222333333333322221 1111111112556666666666555542 2
Q ss_pred cCCCCcccccccccccceeeeccCcccccccc--ccCccceeEEEeccccCccccccccCccccCCCcEEeeccCCCcee
Q 048566 526 FQSQPHFSINSDRKSLRALKLKLDFMDICSMK--LQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFC 603 (760)
Q Consensus 526 ~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 603 (760)
. ....+++.+....+. +..+. +..+.+|+.|.+..+.- ...+ ...+++.+|+.|++..+ ++..
T Consensus 260 i---------~~~~nle~l~~n~N~--l~~lp~ri~~~~~L~~l~~~~nel-~yip--~~le~~~sL~tLdL~~N-~L~~ 324 (1081)
T KOG0618|consen 260 I---------GACANLEALNANHNR--LVALPLRISRITSLVSLSAAYNEL-EYIP--PFLEGLKSLRTLDLQSN-NLPS 324 (1081)
T ss_pred H---------HhcccceEecccchh--HHhhHHHHhhhhhHHHHHhhhhhh-hhCC--Ccccccceeeeeeehhc-cccc
Confidence 2 122233333322222 11110 11112222222211110 0000 11123555555555533 2333
Q ss_pred eecCCC---------------------CcccccccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccc
Q 048566 604 IVDSRE---------------------MVACDAFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFW 662 (760)
Q Consensus 604 i~~~~~---------------------~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~ 662 (760)
+|+... ..+...++.|+.|.+.+- .|++-++. ....|++||.|++++ ++|..+|
T Consensus 325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p--~l~~~~hLKVLhLsy-NrL~~fp- 399 (1081)
T KOG0618|consen 325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANN-HLTDSCFP--VLVNFKHLKVLHLSY-NRLNSFP- 399 (1081)
T ss_pred cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcC-cccccchh--hhccccceeeeeecc-cccccCC-
Confidence 322110 113345667777777763 34433221 345789999999998 6788765
Q ss_pred hhhhhccCCCcEEEEecCCcchhhhcc-------------ccccccccccccccccCeeecCCCcccccc
Q 048566 663 LSTTKCLPRLERIAVVNCSKMKEIFAI-------------GEEVDNAIEKIEFAQLRSLSLGNLPEVTSF 719 (760)
Q Consensus 663 ~~~~~~l~~L~~L~l~~c~~L~~l~~~-------------~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~ 719 (760)
.+.+..++.||+|+++|+ +|+.++.. +.......++..+|.|+.+++ .|.+|+.+
T Consensus 400 as~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDl-S~N~L~~~ 467 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDL-SCNNLSEV 467 (1081)
T ss_pred HHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEec-ccchhhhh
Confidence 467889999999999997 67777632 111111124555566666666 44455544
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=1.8e-16 Score=137.72 Aligned_cols=165 Identities=26% Similarity=0.395 Sum_probs=141.1
Q ss_pred CCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccc
Q 048566 315 RHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIG 393 (760)
Q Consensus 315 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~ 393 (760)
.+++..++++++..|.++ ++.++ .+|+.+ ..+++|++|++.+++++++|.+++.++.|+.|+++-|++.. |.+||
T Consensus 24 ~~~~gLf~~s~ITrLtLS--HNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLS--HNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred hhcccccchhhhhhhhcc--cCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 566777788888888888 66666 477776 78999999999999999999999999999999999999766 88999
Q ss_pred cccccceeecccCccc--ccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCC
Q 048566 394 KLKNLEVLSFLMSDIM--QLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNAS 471 (760)
Q Consensus 394 ~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 471 (760)
.++-|+.||+.+|++. .+|-.+-.|+-|+-|++++| ..+.+|+. ++++++||.|.+..|... ..
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll------------~l 165 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLL------------SL 165 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchh------------hC
Confidence 9999999999998665 78888888999999999997 78888887 899999999999888765 45
Q ss_pred hhhhcCCCCCCEEEEEeccCCCCCcc
Q 048566 472 LDELMHLPRLTTLEIDVKNDSILPEG 497 (760)
Q Consensus 472 ~~~l~~l~~L~~L~l~~~~~~~~~~~ 497 (760)
+.+++.+..|+.|++.++....+|..
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecChh
Confidence 78899999999999998887766654
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=3.8e-13 Score=150.81 Aligned_cols=254 Identities=17% Similarity=0.169 Sum_probs=138.2
Q ss_pred ccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCccccccccccceeeccc
Q 048566 326 LEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLM 405 (760)
Q Consensus 326 Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~ 405 (760)
-..|+++ .+.+. .+|..+. .+|+.|++.+|.++.+|.. +++|++|++++|.++.++. ...+|+.|++++
T Consensus 203 ~~~LdLs--~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVG--ESGLT-TLPDCLP---AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPV--LPPGLLELSIFS 271 (788)
T ss_pred CcEEEcC--CCCCC-cCCcchh---cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccC--cccccceeeccC
Confidence 3445555 33443 3565442 3566677777776666642 4566777777766665332 134666677777
Q ss_pred CcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEE
Q 048566 406 SDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLE 485 (760)
Q Consensus 406 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 485 (760)
|.+..+|.. ..+|+.|++++| .+..+|. .+++|++|++++|.+.. + +. + ..+|+.|.
T Consensus 272 N~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~----~p~~L~~LdLS~N~L~~-L-----------p~-l--p~~L~~L~ 328 (788)
T PRK15387 272 NPLTHLPAL---PSGLCKLWIFGN-QLTSLPV----LPPGLQELSVSDNQLAS-L-----------PA-L--PSELCKLW 328 (788)
T ss_pred Cchhhhhhc---hhhcCEEECcCC-ccccccc----cccccceeECCCCcccc-C-----------CC-C--cccccccc
Confidence 666666542 245666666666 5555553 23566777776665431 1 00 0 12455556
Q ss_pred EEeccCCCCCcchhccccceeEEEecCCCCCCCccccccccCCCCcccccccccccceeeeccCccccccccccCcccee
Q 048566 486 IDVKNDSILPEGFLARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLRALKLKLDFMDICSMKLQGINNVE 565 (760)
Q Consensus 486 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l~~~~l~~L~ 565 (760)
+++|....+|.. ..+|+.|+++.|.+..+|..+ .+|.
T Consensus 329 Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~LP~lp-----------------------------------------~~L~ 365 (788)
T PRK15387 329 AYNNQLTSLPTL--PSGLQELSVSDNQLASLPTLP-----------------------------------------SELY 365 (788)
T ss_pred cccCcccccccc--ccccceEecCCCccCCCCCCC-----------------------------------------cccc
Confidence 666655555431 245666666666555444322 1222
Q ss_pred EEEeccccCccccccccCccccCCCcEEeeccCCCceeeecCCCCcccccccccchhhhcccccccccccccccccccCC
Q 048566 566 CLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKVESFNQ 645 (760)
Q Consensus 566 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 645 (760)
.|.+.... +...+ ....+|+.|+++++ .+..+| ..+++|+.|+++++ .+..++. .+.+
T Consensus 366 ~L~Ls~N~-L~~LP-----~l~~~L~~LdLs~N-~Lt~LP--------~l~s~L~~LdLS~N-~LssIP~------l~~~ 423 (788)
T PRK15387 366 KLWAYNNR-LTSLP-----ALPSGLKELIVSGN-RLTSLP--------VLPSELKELMVSGN-RLTSLPM------LPSG 423 (788)
T ss_pred eehhhccc-cccCc-----ccccccceEEecCC-cccCCC--------CcccCCCEEEccCC-cCCCCCc------chhh
Confidence 23222211 11111 01346788888765 344443 12356777877765 3554432 2346
Q ss_pred ccEEEEecCCCCCcccchhhhhccCCCcEEEEecCC
Q 048566 646 LKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCS 681 (760)
Q Consensus 646 L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 681 (760)
|+.|++.+ ++++.+|. .+..+++|+.|++++++
T Consensus 424 L~~L~Ls~-NqLt~LP~--sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 424 LLSLSVYR-NQLTRLPE--SLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhcc-CcccccCh--HHhhccCCCeEECCCCC
Confidence 77777776 45677764 56677888888888775
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.44 E-value=1e-12 Score=147.51 Aligned_cols=170 Identities=19% Similarity=0.213 Sum_probs=84.4
Q ss_pred EEeecCCCCCCCCCCCCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCC
Q 048566 307 ITLRYDSNRHFPEGLECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSAL 386 (760)
Q Consensus 307 l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l 386 (760)
+.+..+....+|+.+. ++|+.|.+. .+.+. .+|. .+++|++|++++|.++.+|.. ..+|+.|++++|.+
T Consensus 206 LdLs~~~LtsLP~~l~-~~L~~L~L~--~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 206 LNVGESGLTTLPDCLP-AHITTLVIP--DNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL 274 (788)
T ss_pred EEcCCCCCCcCCcchh-cCCCEEEcc--CCcCC-CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCch
Confidence 3333333344454332 356666655 34443 2443 235566666666666665532 24566666666665
Q ss_pred CCccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhcccc
Q 048566 387 GDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSK 466 (760)
Q Consensus 387 ~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 466 (760)
..++. ...+|+.|++++|++..+|.. +++|+.|++++| .+..+|.. ..+|+.|++++|.+.. +
T Consensus 275 ~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~-L------ 337 (788)
T PRK15387 275 THLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTS-L------ 337 (788)
T ss_pred hhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCcccc-c------
Confidence 54222 123455666666666666542 345666666665 45554431 1345555555554431 1
Q ss_pred ccCCChhhhcCCCCCCEEEEEeccCCCCCcchhccccceeEEEecCCC
Q 048566 467 RSNASLDELMHLPRLTTLEIDVKNDSILPEGFLARKLERFKISIGNES 514 (760)
Q Consensus 467 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 514 (760)
+ .+ ..+|+.|++++|....+|.. ..+|..|.++.|.+.
T Consensus 338 -----P-~l--p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~ 375 (788)
T PRK15387 338 -----P-TL--PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLT 375 (788)
T ss_pred -----c-cc--ccccceEecCCCccCCCCCC--Ccccceehhhccccc
Confidence 0 00 12566666666665555532 245555555555433
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=7.6e-15 Score=127.64 Aligned_cols=159 Identities=24% Similarity=0.344 Sum_probs=140.1
Q ss_pred CCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccceeecccCcccccchhhhcCCCCCEEecc
Q 048566 349 GMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLT 427 (760)
Q Consensus 349 ~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 427 (760)
.+.++..|.++++.+..+|..|..+.+|+.|++..|.+++ |.+++.+++|+.|++.-|++..+|.++|.++.|+.||+.
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 6778899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchh-cccccee
Q 048566 428 NCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFL-ARKLERF 506 (760)
Q Consensus 428 ~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L 506 (760)
+|.--+...++.+..++.|+.|.+++|.+. ..+.+++++++|+.|.+..++...+|...+ +..|+.|
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe------------~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE------------ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLREL 178 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc------------cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHH
Confidence 874333333444777899999999888653 457899999999999999999988888774 5999999
Q ss_pred EEEecCCCCCCCc
Q 048566 507 KISIGNESFMPPK 519 (760)
Q Consensus 507 ~l~~~~~~~l~~~ 519 (760)
.|.+|.++.+|+.
T Consensus 179 hiqgnrl~vlppe 191 (264)
T KOG0617|consen 179 HIQGNRLTVLPPE 191 (264)
T ss_pred hcccceeeecChh
Confidence 9999998887753
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=7.5e-12 Score=141.54 Aligned_cols=94 Identities=17% Similarity=0.270 Sum_probs=41.9
Q ss_pred ceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccceeecccCcccccchhhhcCCCCCEEecccccc
Q 048566 353 LRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFH 431 (760)
Q Consensus 353 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~ 431 (760)
...|+++++.++.+|..+. .+|+.|++++|.+.. |..+. .+|++|++++|++..+|..+. .+|+.|++++| .
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-R 252 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC-c
Confidence 3445555555544444332 245555555555444 22222 245555555555555544332 24555555554 3
Q ss_pred ccccCcccccCCCCCCEEEcccccc
Q 048566 432 LKVIAPNLISSLTRLEELYMGNCFI 456 (760)
Q Consensus 432 l~~~~~~~i~~l~~L~~L~l~~~~~ 456 (760)
+..+|.. + ..+|+.|++++|.+
T Consensus 253 L~~LP~~-l--~s~L~~L~Ls~N~L 274 (754)
T PRK15370 253 ITELPER-L--PSALQSLDLFHNKI 274 (754)
T ss_pred cCcCChh-H--hCCCCEEECcCCcc
Confidence 4444432 1 13455555544433
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.31 E-value=1.2e-12 Score=150.09 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=87.6
Q ss_pred ccccccccchhhhcccccccccc--cccccccc-cCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhc
Q 048566 612 ACDAFPLLESLILHNLINMERVC--IDRLKVES-FNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFA 688 (760)
Q Consensus 612 ~~~~~p~L~~L~l~~~~~l~~~~--~~~~~~~~-~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~ 688 (760)
....+++|+.|.+.+|...+... ........ |++|..+.+.+|..++.+.+ ....|+|+.|.+..|+.++++++
T Consensus 712 ~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 712 SLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCC
Confidence 55678999999999998754321 11112223 88999999999999998765 45679999999999999999887
Q ss_pred cccc-cccccccccccccCee-ecCCCccccccccCCCC-CCCCCCCCC
Q 048566 689 IGEE-VDNAIEKIEFAQLRSL-SLGNLPEVTSFCREVKT-PSASPNRPV 734 (760)
Q Consensus 689 ~~~~-~~~~~~~~~l~~L~~L-~l~~c~~L~~~~~~~~~-~sL~~~~~~ 734 (760)
.... .........+..+..+ .+.+.+.+.++++.++. ++++...++
T Consensus 789 ~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve 837 (889)
T KOG4658|consen 789 KLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVE 837 (889)
T ss_pred HHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehh
Confidence 6221 1122235667778888 68999999999988888 777655554
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.27 E-value=1.5e-11 Score=139.11 Aligned_cols=116 Identities=17% Similarity=0.352 Sum_probs=54.7
Q ss_pred CccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccceeec
Q 048566 325 NLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVLSF 403 (760)
Q Consensus 325 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l 403 (760)
.++.|+++ ++.+. .+|..++ .+|++|++++|.++.+|..+. .+|+.|++++|.+.. |..+. .+|++|++
T Consensus 200 ~L~~L~Ls--~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 200 QITTLILD--NNELK-SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred CCcEEEec--CCCCC-cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEEC
Confidence 45555554 23333 3444332 245555555555555554432 245555555555544 22222 34555555
Q ss_pred ccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEcccccc
Q 048566 404 LMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFI 456 (760)
Q Consensus 404 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 456 (760)
++|++..+|..+. .+|+.|++++| .+..+|.. + .++|+.|++++|.+
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-l--p~sL~~L~Ls~N~L 316 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-L--PSGITHLNVQSNSL 316 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCC-ccccCccc-c--hhhHHHHHhcCCcc
Confidence 5555555554332 35555555554 44444432 1 12455555555443
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.16 E-value=2.5e-09 Score=128.95 Aligned_cols=244 Identities=18% Similarity=0.237 Sum_probs=152.1
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHHHHHHHHHHHhCccccc--------------hhhHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIKRIQQEIAEKLGLELRE--------------EVESSRASRIF 65 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~--------------~~~~~~~~~~~ 65 (760)
.+|.||||++.++.++ ++.++|+++... .+...+...++..++..... .........+.
T Consensus 40 paG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (903)
T PRK04841 40 PAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLF 113 (903)
T ss_pred CCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHH
Confidence 3799999999998853 236899999754 46566777777766421111 11122334455
Q ss_pred HHHHc-CCcEEEEEECCCCccc--cc-cccccccCCCCCcEEEEeeCCH--------------------------HHHHH
Q 048566 66 ERLRN-EKKILVVLDNIWKHLD--LE-TVGIPFGEDHKGCKLLLTARDR--------------------------KEAWR 115 (760)
Q Consensus 66 ~~l~~-~~r~LlVlDdv~~~~~--~~-~l~~~~~~~~~gs~IlvTTR~~--------------------------~~a~~ 115 (760)
..+.. +.+++||+||+....+ .. .+..-++....+.++|||||.. +|+.+
T Consensus 114 ~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ 193 (903)
T PRK04841 114 IELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQ 193 (903)
T ss_pred HHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHH
Confidence 55543 5899999999976531 12 2222223334566888999984 78888
Q ss_pred HHHHHhCCCcCChhhHHHHHHHHHHhCCcchHHHHHHHHHccCChHHHHHHHHHhcCCCCCCcCCchhHHHHHH-HHhhh
Q 048566 116 LFKMMVGDDVENRELKSTAIDVARACGGLPIALTTVAMALRSKSLHGWKVSLGELRTPSMDNFEGVSAETYSSI-ELSFN 194 (760)
Q Consensus 116 Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l-~~sy~ 194 (760)
+|....+.... .+.+.+|.+.++|.|+++..++..++..... .......+.... ...+...+ .-.|+
T Consensus 194 ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~l~~~v~~ 261 (903)
T PRK04841 194 FFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGIN-------ASHLSDYLVEEVLD 261 (903)
T ss_pred HHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCC-------chhHHHHHHHHHHh
Confidence 88766544322 2446789999999999999998877544210 011111111000 22345444 33488
Q ss_pred cCChhhHhHHHhhhccCcccccHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHhccccccc---CCCceeccHHHH
Q 048566 195 HLKDEQLKKIFLLCSQMETRILTLDLFKYSMGLGIFKRVNKMEDARDKLYALVHELRNSCLLIED---SNEQFSMHDVVR 271 (760)
Q Consensus 195 ~L~~~~lk~cfl~~a~fp~~~~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~---~~~~~~mH~lv~ 271 (760)
.||++ .++.++..|+++ .+.. .+...-. | ..+ ..+.+++|.+.+++... ...+|+.|++++
T Consensus 262 ~l~~~-~~~~l~~~a~~~-~~~~-~l~~~l~--~-------~~~----~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r 325 (903)
T PRK04841 262 NVDLE-TRHFLLRCSVLR-SMND-ALIVRVT--G-------EEN----GQMRLEELERQGLFIQRMDDSGEWFRYHPLFA 325 (903)
T ss_pred cCCHH-HHHHHHHhcccc-cCCH-HHHHHHc--C-------CCc----HHHHHHHHHHCCCeeEeecCCCCEEehhHHHH
Confidence 99998 699999999987 3332 3333211 1 111 23458889999986532 334799999999
Q ss_pred HHHHHHh
Q 048566 272 DVAISIG 278 (760)
Q Consensus 272 ~~~~~~~ 278 (760)
++.+...
T Consensus 326 ~~l~~~l 332 (903)
T PRK04841 326 SFLRHRC 332 (903)
T ss_pred HHHHHHH
Confidence 9998765
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.98 E-value=1.2e-10 Score=115.30 Aligned_cols=126 Identities=22% Similarity=0.331 Sum_probs=96.6
Q ss_pred ccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCC-hhhhhhhccCCeeEecC-CCCCC-c-ccccccccccee
Q 048566 326 LEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSF-PSSIDLLVNLHTLCLDQ-SALGD-I-AIIGKLKNLEVL 401 (760)
Q Consensus 326 Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~-~~l~~-~-~~~~~l~~L~~L 401 (760)
...+.|. .|.++ .+|+..|+.+++||.|||++|.|+.+ |..+..+..|-.|-+-+ |+|++ | ..|++|..|+.|
T Consensus 69 tveirLd--qN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 69 TVEIRLD--QNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred ceEEEec--cCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 3445555 56665 68888889999999999999998877 78888888887777766 77888 4 458888888888
Q ss_pred ecccCcccccc-hhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccc
Q 048566 402 SFLMSDIMQLP-EELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCF 455 (760)
Q Consensus 402 ~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 455 (760)
.+.-|.+..++ ..+..|++|..|.+.++ .+..++...+..+.+++.+.+..+.
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 88888887665 46778888888888886 6777777667777777777765554
No 24
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.97 E-value=1.8e-08 Score=110.33 Aligned_cols=245 Identities=21% Similarity=0.233 Sum_probs=159.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccccc--------------hhhHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELRE--------------EVESSRASRIFE 66 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~--------------~~~~~~~~~~~~ 66 (760)
+|.|||||+.+++.... + =..|.|.++.+.. +...+...++..++.-.+. ......++.+..
T Consensus 46 AGfGKttl~aq~~~~~~-~--~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~ 122 (894)
T COG2909 46 AGFGKTTLLAQWRELAA-D--GAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLN 122 (894)
T ss_pred CCCcHHHHHHHHHHhcC-c--ccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHH
Confidence 79999999999998332 2 3569999998755 6778888888877632221 111223455555
Q ss_pred HHHc-CCcEEEEEECCCCcc--cc-ccccccccCCCCCcEEEEeeCCH--------------------------HHHHHH
Q 048566 67 RLRN-EKKILVVLDNIWKHL--DL-ETVGIPFGEDHKGCKLLLTARDR--------------------------KEAWRL 116 (760)
Q Consensus 67 ~l~~-~~r~LlVlDdv~~~~--~~-~~l~~~~~~~~~gs~IlvTTR~~--------------------------~~a~~L 116 (760)
.+.. .++..+||||.--.. .. +.+..-+....++-..+||||+. +|+.++
T Consensus 123 Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~f 202 (894)
T COG2909 123 ELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAF 202 (894)
T ss_pred HHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHH
Confidence 5543 478999999964331 11 22222233445677899999998 899999
Q ss_pred HHHHhCCCcCChhhHHHHHHHHHHhCCcchHHHHHHHHHccC-ChHHHHHHHHHhcCCCCCCcCCchhHHHH-HHHHhhh
Q 048566 117 FKMMVGDDVENRELKSTAIDVARACGGLPIALTTVAMALRSK-SLHGWKVSLGELRTPSMDNFEGVSAETYS-SIELSFN 194 (760)
Q Consensus 117 f~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~~~~-~l~~sy~ 194 (760)
|....+..-+. .-++.+.+...|.+-|+..++=.++.. +.+.-...++ +...-+.. ...--++
T Consensus 203 l~~~~~l~Ld~----~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls-----------G~~~~l~dYL~eeVld 267 (894)
T COG2909 203 LNDRGSLPLDA----ADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS-----------GAASHLSDYLVEEVLD 267 (894)
T ss_pred HHHcCCCCCCh----HHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc-----------chHHHHHHHHHHHHHh
Confidence 98766443332 337789999999999999999888843 3322221111 00111222 2345578
Q ss_pred cCChhhHhHHHhhhccCcccccHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHhccccccc---CCCceeccHHHH
Q 048566 195 HLKDEQLKKIFLLCSQMETRILTLDLFKYSMGLGIFKRVNKMEDARDKLYALVHELRNSCLLIED---SNEQFSMHDVVR 271 (760)
Q Consensus 195 ~L~~~~lk~cfl~~a~fp~~~~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~---~~~~~~mH~lv~ 271 (760)
.||++ ++..++-+|+++.-- .+|+..-.+ ++.+..++++|.+++++... ...+|+.|.+..
T Consensus 268 ~Lp~~-l~~FLl~~svl~~f~--~eL~~~Ltg-------------~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFa 331 (894)
T COG2909 268 RLPPE-LRDFLLQTSVLSRFN--DELCNALTG-------------EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFA 331 (894)
T ss_pred cCCHH-HHHHHHHHHhHHHhh--HHHHHHHhc-------------CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHH
Confidence 89998 799999999876311 133333221 22345669999999998743 678999999999
Q ss_pred HHHHHHhhc
Q 048566 272 DVAISIGCR 280 (760)
Q Consensus 272 ~~~~~~~~~ 280 (760)
+|.+.....
T Consensus 332 eFL~~r~~~ 340 (894)
T COG2909 332 EFLRQRLQR 340 (894)
T ss_pred HHHHhhhcc
Confidence 998876543
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=5.9e-10 Score=102.53 Aligned_cols=131 Identities=24% Similarity=0.268 Sum_probs=52.9
Q ss_pred cCCCCceEEEecCCCCCCChhhhh-hhccCCeeEecCCCCCCccccccccccceeecccCcccccchhh-hcCCCCCEEe
Q 048566 348 IGMKKLRVLDFTRMQFSSFPSSID-LLVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEEL-GQLNKLRLLD 425 (760)
Q Consensus 348 ~~l~~Lr~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~ 425 (760)
.+...+|.|+|.++.++.+. .++ .+.+|+.|++++|.++.++.+..+.+|++|++++|.|+.++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 35556888888888888764 455 57888999999999888888888899999999999988887665 3688999999
Q ss_pred ccccccccccCc-ccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEe
Q 048566 426 LTNCFHLKVIAP-NLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDV 488 (760)
Q Consensus 426 l~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 488 (760)
+++| .+..+.. ..++.+++|++|++.+|++.. ......-.+..+|+|+.|+-..
T Consensus 95 L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~--------~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCE--------KKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGG--------STTHHHHHHHH-TT-SEETTEE
T ss_pred CcCC-cCCChHHhHHHHcCCCcceeeccCCcccc--------hhhHHHHHHHHcChhheeCCEE
Confidence 9887 5655433 336778889999998887752 1222344566788888887653
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=2.6e-10 Score=119.60 Aligned_cols=137 Identities=21% Similarity=0.208 Sum_probs=76.9
Q ss_pred hhhcCCCCceEEEecCCCCC-----CChhhhhhhccCCeeEecCCCCCC--------ccccccccccceeecccCccc-c
Q 048566 345 NFFIGMKKLRVLDFTRMQFS-----SFPSSIDLLVNLHTLCLDQSALGD--------IAIIGKLKNLEVLSFLMSDIM-Q 410 (760)
Q Consensus 345 ~~~~~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~l~~~~l~~--------~~~~~~l~~L~~L~l~~~~i~-~ 410 (760)
.+|..+.+|++|+++++.+. .++..+...+.|++|+++++.+.. +..+.++.+|+.|++++|.+. .
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 34566677888888888774 355566667778888887776552 133555667777777777665 3
Q ss_pred cchhhhcCCC---CCEEeccccccccccC----cccccCC-CCCCEEEccccccchhhhhccccccCCChhhhcCCCCCC
Q 048566 411 LPEELGQLNK---LRLLDLTNCFHLKVIA----PNLISSL-TRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLT 482 (760)
Q Consensus 411 lp~~~~~l~~---L~~L~l~~~~~l~~~~----~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 482 (760)
.+..+..+.+ |++|++++| .+.... ...+..+ ++|++|++++|.+.... .......+..+++|+
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~-------~~~~~~~~~~~~~L~ 168 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS-------CEALAKALRANRDLK 168 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH-------HHHHHHHHHhCCCcC
Confidence 3344444444 777777766 233111 1123444 66677777666654211 011123344455566
Q ss_pred EEEEEec
Q 048566 483 TLEIDVK 489 (760)
Q Consensus 483 ~L~l~~~ 489 (760)
+|+++++
T Consensus 169 ~L~l~~n 175 (319)
T cd00116 169 ELNLANN 175 (319)
T ss_pred EEECcCC
Confidence 5555544
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=2.2e-09 Score=98.79 Aligned_cols=133 Identities=27% Similarity=0.345 Sum_probs=52.1
Q ss_pred CCCChhhhhhhccCCeeEecCCCCCCccccc-cccccceeecccCcccccchhhhcCCCCCEEeccccccccccCccccc
Q 048566 363 FSSFPSSIDLLVNLHTLCLDQSALGDIAIIG-KLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLIS 441 (760)
Q Consensus 363 ~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~ 441 (760)
+...|. +.+..+++.|+|+++.+..++.++ .+.+|+.|++++|.|+.++ ++..+++|+.|++++| .++.+......
T Consensus 9 i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~ 85 (175)
T PF14580_consen 9 IEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDK 85 (175)
T ss_dssp ----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHH
T ss_pred cccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHH
Confidence 334443 446668999999999999988888 5899999999999999886 6888999999999998 78887654234
Q ss_pred CCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcch-----hccccceeEE
Q 048566 442 SLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGF-----LARKLERFKI 508 (760)
Q Consensus 442 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l 508 (760)
.+++|++|++++|.+. .-..+..++.+++|+.|++.+|.....+..- .+++|+.|+-
T Consensus 86 ~lp~L~~L~L~~N~I~----------~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSNNKIS----------DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TTS-------------SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcCCcCC----------ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 6999999999999875 2234677888999999999988866544322 2377777653
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.82 E-value=2.3e-10 Score=118.45 Aligned_cols=137 Identities=23% Similarity=0.297 Sum_probs=74.0
Q ss_pred cCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccceeecccCcccccchhhhcCCCCCEEec
Q 048566 348 IGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDL 426 (760)
Q Consensus 348 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l 426 (760)
+++..|.+|+|+.|++..+|..++.|+ |+.|-+++|+++. |+.++.+.+|..||.+.|.+..+|..++.+.+|+.|++
T Consensus 118 ~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence 455555555555555555555554432 5555555555555 45555555555555555555555555555555555555
Q ss_pred cccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhc
Q 048566 427 TNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLA 500 (760)
Q Consensus 427 ~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 500 (760)
..| ++..+|+. +. --.|..|++++|.+. ..+..+.+|+.|+.|-+.+|.....|..++.
T Consensus 197 rRn-~l~~lp~E-l~-~LpLi~lDfScNkis------------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 197 RRN-HLEDLPEE-LC-SLPLIRLDFSCNKIS------------YLPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred hhh-hhhhCCHH-Hh-CCceeeeecccCcee------------ecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 554 45555554 33 223555555555443 2344555555566666655555555555443
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=1.7e-09 Score=103.10 Aligned_cols=134 Identities=19% Similarity=0.224 Sum_probs=111.3
Q ss_pred CCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCccccccccccceeecccCcccccchhhhcCCCCCEEecccc
Q 048566 350 MKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNC 429 (760)
Q Consensus 350 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~ 429 (760)
-+.|..|||++|.++.+-.+..-++.++.|++++|.+.....+..|.+|+.||+++|.+.++--.=.+|-|.+.|.+++|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 35689999999999999999999999999999999998887788899999999999988877655567888999999997
Q ss_pred ccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCc
Q 048566 430 FHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPE 496 (760)
Q Consensus 430 ~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 496 (760)
.++.+.. +++|-+|..|++.+|.+..-. ....+++++.|+++.+.+|.....+.
T Consensus 363 -~iE~LSG--L~KLYSLvnLDl~~N~Ie~ld----------eV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 363 -KIETLSG--LRKLYSLVNLDLSSNQIEELD----------EVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred -hHhhhhh--hHhhhhheeccccccchhhHH----------HhcccccccHHHHHhhcCCCccccch
Confidence 6776654 789999999999999875222 25678899999999998887666554
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.74 E-value=5.6e-10 Score=111.53 Aligned_cols=83 Identities=18% Similarity=0.192 Sum_probs=46.8
Q ss_pred CceEEEecCCCCC---CChhhhhhhccCCeeEecCCC-CCC--cccc-ccccccceeecccC-ccccc--chhhhcCCCC
Q 048566 352 KLRVLDFTRMQFS---SFPSSIDLLVNLHTLCLDQSA-LGD--IAII-GKLKNLEVLSFLMS-DIMQL--PEELGQLNKL 421 (760)
Q Consensus 352 ~Lr~L~l~~~~~~---~lp~~i~~l~~L~~L~l~~~~-l~~--~~~~-~~l~~L~~L~l~~~-~i~~l--p~~~~~l~~L 421 (760)
.||.|.++++.-. .+-....++++++.|.+.+|. +++ ..++ ..+.+|++|++..| .++.. -.-...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 4677777776433 333445567777777777776 433 2222 34666777777765 44422 1123446667
Q ss_pred CEEeccccccccc
Q 048566 422 RLLDLTNCFHLKV 434 (760)
Q Consensus 422 ~~L~l~~~~~l~~ 434 (760)
.+|+++.|+.+..
T Consensus 219 ~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 219 KYLNLSWCPQISG 231 (483)
T ss_pred HHhhhccCchhhc
Confidence 7777777665544
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.73 E-value=1.7e-09 Score=107.31 Aligned_cols=267 Identities=16% Similarity=0.176 Sum_probs=171.8
Q ss_pred EEecCCccccccchhccccceEEEeecCCCCCCCCCC--CCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecC-C
Q 048566 285 ILVGNEDVWDWRNEDALRKCKAITLRYDSNRHFPEGL--ECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTR-M 361 (760)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~ 361 (760)
+..++.++.++| .+.+.....+.+..+....+|+.. .+++||.|+|+ +|.++ .+.+..|++++.|..|-+.+ |
T Consensus 51 VdCr~~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS--~N~Is-~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLS--KNNIS-FIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceeccc--ccchh-hcChHhhhhhHhhhHHHhhcCC
Confidence 444455555555 356777888888866668998754 89999999999 66666 46677889999988887776 8
Q ss_pred CCCCChh-hhhhhccCCeeEecCCCCCC--ccccccccccceeecccCcccccch-hhhcCCCCCEEecccccc-----c
Q 048566 362 QFSSFPS-SIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVLSFLMSDIMQLPE-ELGQLNKLRLLDLTNCFH-----L 432 (760)
Q Consensus 362 ~~~~lp~-~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~-----l 432 (760)
.|+.+|. .++.|..|+-|.+.-|.+.- ...+..|++|..|.+..|.+..++. .+..+.+++++.+..+.. +
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence 9999985 68899999999999888766 3668889999999999998888886 677888888887766541 1
Q ss_pred cc-------cCcccccCCCCCCEEEcccccc-----------chhhhh----ccccccCCChhhhcCCCCCCEEEEEecc
Q 048566 433 KV-------IAPNLISSLTRLEELYMGNCFI-----------EWEVER----ANSKRSNASLDELMHLPRLTTLEIDVKN 490 (760)
Q Consensus 433 ~~-------~~~~~i~~l~~L~~L~l~~~~~-----------~~~~~~----~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 490 (760)
.. .|.. .+...-..-..+.+..+ .+.++. .+.-........++.|++|++|++++|.
T Consensus 207 ~wla~~~a~~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 207 PWLADDLAMNPIE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred chhhhHHhhchhh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 11 1110 11111111111111000 001100 0111122234557889999999999998
Q ss_pred CCCCCcchh--ccccceeEEEecCCCCCCCccccccccCCCCcccccccccccceeeeccCccccccccccCc---ccee
Q 048566 491 DSILPEGFL--ARKLERFKISIGNESFMPPKCVRQDWFQSQPHFSINSDRKSLRALKLKLDFMDICSMKLQGI---NNVE 565 (760)
Q Consensus 491 ~~~~~~~~~--~~~L~~L~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l~~~~l---~~L~ 565 (760)
+..+....+ ..+++.|.+..|.+..+.+.- . .....|+.|.|..+. |+.+.+..+ ..|.
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~-----f---------~~ls~L~tL~L~~N~--it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGM-----F---------QGLSGLKTLSLYDNQ--ITTVAPGAFQTLFSLS 349 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHh-----h---------hccccceeeeecCCe--eEEEecccccccceee
Confidence 887777664 488888888888755432111 0 244456666665554 554445444 4555
Q ss_pred EEEeccc
Q 048566 566 CLWLDKL 572 (760)
Q Consensus 566 ~L~l~~~ 572 (760)
.|.+...
T Consensus 350 ~l~l~~N 356 (498)
T KOG4237|consen 350 TLNLLSN 356 (498)
T ss_pred eeehccC
Confidence 5555544
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=8.1e-10 Score=114.47 Aligned_cols=170 Identities=25% Similarity=0.328 Sum_probs=138.0
Q ss_pred cEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccceeeccc
Q 048566 327 EFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVLSFLM 405 (760)
Q Consensus 327 r~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~ 405 (760)
...+++ .+.+. .+|..+ +.+..|..|.++.|.+..+|..++++..|.||+++.|.+.. |..++.|+ |+.|-+++
T Consensus 78 ~~aDls--rNR~~-elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 78 VFADLS--RNRFS-ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhcc--ccccc-cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence 344555 33333 466554 67778888999999999999999999999999999999887 67777765 89999999
Q ss_pred CcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEE
Q 048566 406 SDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLE 485 (760)
Q Consensus 406 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 485 (760)
|+++.+|..++.+..|..|+.+.| .+..+|.. ++.+.+|+.|.+..|.+. ..+.++..|+ |..|+
T Consensus 153 Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~------------~lp~El~~Lp-Li~lD 217 (722)
T KOG0532|consen 153 NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLE------------DLPEELCSLP-LIRLD 217 (722)
T ss_pred CccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhh------------hCCHHHhCCc-eeeee
Confidence 999999999998899999999988 78888877 889999999998888765 4567777664 88999
Q ss_pred EEeccCCCCCcch-hccccceeEEEecCCCCC
Q 048566 486 IDVKNDSILPEGF-LARKLERFKISIGNESFM 516 (760)
Q Consensus 486 l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~l 516 (760)
+++|.+..+|-.. .+++|+.|.+.+|.+.+=
T Consensus 218 fScNkis~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 218 FSCNKISYLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred cccCceeecchhhhhhhhheeeeeccCCCCCC
Confidence 9999988888765 568899999988876553
No 33
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.69 E-value=9.9e-07 Score=89.83 Aligned_cols=152 Identities=18% Similarity=0.238 Sum_probs=91.7
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHH----HHHHcCCcEEE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIF----ERLRNEKKILV 76 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~----~~l~~~~r~Ll 76 (760)
.+|+||||+|+.+++..... .+ .++|+. ....+..++++.|+..++.+............+. .....+++.+|
T Consensus 51 ~~G~GKTtl~~~l~~~l~~~-~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vl 127 (269)
T TIGR03015 51 EVGAGKTTLIRNLLKRLDQE-RV-VAAKLV-NTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKRALL 127 (269)
T ss_pred CCCCCHHHHHHHHHHhcCCC-Ce-EEeeee-CCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 37999999999999886532 11 223433 3345677889999999877654332223233333 33335788999
Q ss_pred EEECCCCcc--cccccccc--c-cCCCCCcEEEEeeCCH----------------------------HHHHHHHHHHh--
Q 048566 77 VLDNIWKHL--DLETVGIP--F-GEDHKGCKLLLTARDR----------------------------KEAWRLFKMMV-- 121 (760)
Q Consensus 77 VlDdv~~~~--~~~~l~~~--~-~~~~~gs~IlvTTR~~----------------------------~~a~~Lf~~~a-- 121 (760)
|+||++... .++.+..- + ........|++|.... +|..+++...+
T Consensus 128 iiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~ 207 (269)
T TIGR03015 128 VVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLER 207 (269)
T ss_pred EEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHH
Confidence 999998763 34443211 1 1122222345554322 56666666544
Q ss_pred -CCCcCChhhHHHHHHHHHHhCCcchHHHHHHHHH
Q 048566 122 -GDDVENRELKSTAIDVARACGGLPIALTTVAMAL 155 (760)
Q Consensus 122 -~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l 155 (760)
+......--.+..+.|++.++|.|..|..++..+
T Consensus 208 ~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 208 AGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred cCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 2211111224678899999999999999888776
No 34
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.54 E-value=7.7e-06 Score=88.34 Aligned_cols=84 Identities=27% Similarity=0.168 Sum_probs=60.4
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcc-c--cchhhHHHHHHHHHHHHc-CCcEEE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLE-L--REEVESSRASRIFERLRN-EKKILV 76 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~--~~~~~~~~~~~~~~~l~~-~~r~Ll 76 (760)
.+|+|||+++++++++.......-.++++++....+...++..|++++... . ......+....+.+.+.. ++..+|
T Consensus 63 ~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi 142 (394)
T PRK00411 63 PPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIV 142 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 379999999999999876443223467788777778889999999998652 1 122234455666666653 467899
Q ss_pred EEECCCCc
Q 048566 77 VLDNIWKH 84 (760)
Q Consensus 77 VlDdv~~~ 84 (760)
|+|+++..
T Consensus 143 viDE~d~l 150 (394)
T PRK00411 143 ALDDINYL 150 (394)
T ss_pred EECCHhHh
Confidence 99999875
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.53 E-value=6.8e-08 Score=101.27 Aligned_cols=158 Identities=22% Similarity=0.177 Sum_probs=97.9
Q ss_pred hhcCCCCceEEEecCCCCC-CChhhhhhhcc---CCeeEecCCCCCC--c----cccccc-cccceeecccCccc-----
Q 048566 346 FFIGMKKLRVLDFTRMQFS-SFPSSIDLLVN---LHTLCLDQSALGD--I----AIIGKL-KNLEVLSFLMSDIM----- 409 (760)
Q Consensus 346 ~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~---L~~L~l~~~~l~~--~----~~~~~l-~~L~~L~l~~~~i~----- 409 (760)
.+..+++|+.|+++++.+. ..+..+..+.+ |++|++++|.+.. . ..+..+ ++|+.|++++|.+.
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 3466778888888888776 34555666655 8888888887653 1 235555 78888888888766
Q ss_pred ccchhhhcCCCCCEEeccccccccc-----cCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEE
Q 048566 410 QLPEELGQLNKLRLLDLTNCFHLKV-----IAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTL 484 (760)
Q Consensus 410 ~lp~~~~~l~~L~~L~l~~~~~l~~-----~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 484 (760)
.++..+..+.+|++|++++| .+.. ++. .+..+++|++|++++|.+...- .......+..+++|+.|
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~i~~~~-------~~~l~~~~~~~~~L~~L 226 (319)
T cd00116 156 ALAKALRANRDLKELNLANN-GIGDAGIRALAE-GLKANCNLEVLDLNNNGLTDEG-------ASALAETLASLKSLEVL 226 (319)
T ss_pred HHHHHHHhCCCcCEEECcCC-CCchHHHHHHHH-HHHhCCCCCEEeccCCccChHH-------HHHHHHHhcccCCCCEE
Confidence 34455667778888888877 4442 111 2445568888888888664211 11123445667788888
Q ss_pred EEEeccCCCCCc--ch-h----ccccceeEEEecC
Q 048566 485 EIDVKNDSILPE--GF-L----ARKLERFKISIGN 512 (760)
Q Consensus 485 ~l~~~~~~~~~~--~~-~----~~~L~~L~l~~~~ 512 (760)
+++++....... .. . ..+|+.|++..|.
T Consensus 227 ~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 888765432110 00 1 1467777766654
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.49 E-value=2.5e-09 Score=107.01 Aligned_cols=295 Identities=17% Similarity=0.135 Sum_probs=166.4
Q ss_pred ccCCeeEecCCC-CCC--c-cccccccccceeecccC-cccc--cchhhhcCCCCCEEeccccccccccCcc-cccCCCC
Q 048566 374 VNLHTLCLDQSA-LGD--I-AIIGKLKNLEVLSFLMS-DIMQ--LPEELGQLNKLRLLDLTNCFHLKVIAPN-LISSLTR 445 (760)
Q Consensus 374 ~~L~~L~l~~~~-l~~--~-~~~~~l~~L~~L~l~~~-~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~~~~-~i~~l~~ 445 (760)
-.|+.|.++||. +.. . ....+++++++|++.+| +++. +-.--..+++|++|++..|..+...... .....++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 468889999998 333 2 23567899999999998 4442 1222356889999999999888766543 2345899
Q ss_pred CCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCcchhc----cccceeEEEecCCCCCCCccc
Q 048566 446 LEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPEGFLA----RKLERFKISIGNESFMPPKCV 521 (760)
Q Consensus 446 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~l~~~~~ 521 (760)
|++|++++|.-... +..-.-...++.++.+...++........... ..+.++++..++
T Consensus 218 L~~lNlSwc~qi~~---------~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~--------- 279 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG---------NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCN--------- 279 (483)
T ss_pred HHHhhhccCchhhc---------CcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhc---------
Confidence 99999999975411 11111223344455554444332222211111 112222211111
Q ss_pred cccccCCCCcccccccccccceeeeccCcccccccc----ccCccceeEEEeccccCccccccccCccccCCCcEEeecc
Q 048566 522 RQDWFQSQPHFSINSDRKSLRALKLKLDFMDICSMK----LQGINNVECLWLDKLQGIGDVLFNLDTEGFSQLKLLWVQN 597 (760)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~l~~l~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 597 (760)
.+.+.+ -.++..|+.|...++....+..-+--..+.++|+.|.+.+
T Consensus 280 ------------------------------~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~ 329 (483)
T KOG4341|consen 280 ------------------------------QLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSG 329 (483)
T ss_pred ------------------------------cccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccc
Confidence 111110 1223556666666665544332222224467888888888
Q ss_pred CCCceeeecCCCCcccccccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccc---hhhhhccCCCcE
Q 048566 598 NPDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFW---LSTTKCLPRLER 674 (760)
Q Consensus 598 ~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~---~~~~~~l~~L~~ 674 (760)
|...... ....-.-..+.|+.+.+.+|....+-.... ...++|.|+.|.+++|..+++... ......+..|+.
T Consensus 330 c~~fsd~---~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s-ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~ 405 (483)
T KOG4341|consen 330 CQQFSDR---GFTMLGRNCPHLERLDLEECGLITDGTLAS-LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEV 405 (483)
T ss_pred cchhhhh---hhhhhhcCChhhhhhcccccceehhhhHhh-hccCCchhccCChhhhhhhhhhhhhhhhhccccccccce
Confidence 8754322 011112345778888777776554432222 234578888888888877765411 011234456888
Q ss_pred EEEecCCcchhhhccccccccccccccccccCeeecCCCccccccccCCCCCCC
Q 048566 675 IAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLPEVTSFCREVKTPSA 728 (760)
Q Consensus 675 L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~sL 728 (760)
+++.+||.+++-..+ .+..+++|+.+++.+|.....-+..++..++
T Consensus 406 lEL~n~p~i~d~~Le--------~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 406 LELDNCPLITDATLE--------HLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred eeecCCCCchHHHHH--------HHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 888888877666543 5566778888888888777655544444444
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=3.3e-08 Score=99.70 Aligned_cols=153 Identities=24% Similarity=0.196 Sum_probs=62.8
Q ss_pred cccceEEEeecCCCCCCCC---CCCCCCccEEEeeccCCccccc-CCchhhcCCCCceEEEecCCCCCCChhh--hhhhc
Q 048566 301 LRKCKAITLRYDSNRHFPE---GLECPNLEFLCISLKDSSLEIN-IPGNFFIGMKKLRVLDFTRMQFSSFPSS--IDLLV 374 (760)
Q Consensus 301 ~~~~r~l~l~~~~~~~~~~---~~~~~~Lr~L~l~~~~~~~~~~-~~~~~~~~l~~Lr~L~l~~~~~~~lp~~--i~~l~ 374 (760)
.+++|.+++++..+...+. ...|+++|.|+|+. +.+..- .-..+...+++|+.|+++.|.+...-.+ -..+.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~--NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSR--NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchh--hhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 4456666666333222221 22455555555552 211100 0012234455555555555544322111 12344
Q ss_pred cCCeeEecCCCCCC--c-cccccccccceeecccC-cccccchhhhcCCCCCEEeccccccccccC-cccccCCCCCCEE
Q 048566 375 NLHTLCLDQSALGD--I-AIIGKLKNLEVLSFLMS-DIMQLPEELGQLNKLRLLDLTNCFHLKVIA-PNLISSLTRLEEL 449 (760)
Q Consensus 375 ~L~~L~l~~~~l~~--~-~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~-~~~i~~l~~L~~L 449 (760)
+|+.|.++.|.+.. + .....+++|+.|++.+| .+..-.....-++.|+.|++++|. +-.++ ...++.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhh
Confidence 55555555555432 1 22333455555555555 221111122234445555555542 22222 1113445555555
Q ss_pred Ecccccc
Q 048566 450 YMGNCFI 456 (760)
Q Consensus 450 ~l~~~~~ 456 (760)
+++.|.+
T Consensus 277 nls~tgi 283 (505)
T KOG3207|consen 277 NLSSTGI 283 (505)
T ss_pred hccccCc
Confidence 5554443
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=6.2e-08 Score=97.78 Aligned_cols=141 Identities=20% Similarity=0.232 Sum_probs=84.6
Q ss_pred ChhhhhhhccCCeeEecCCCCCCcc---ccccccccceeecccCccc---ccchhhhcCCCCCEEeccccccccccCc-c
Q 048566 366 FPSSIDLLVNLHTLCLDQSALGDIA---IIGKLKNLEVLSFLMSDIM---QLPEELGQLNKLRLLDLTNCFHLKVIAP-N 438 (760)
Q Consensus 366 lp~~i~~l~~L~~L~l~~~~l~~~~---~~~~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~ 438 (760)
+-..=+++.+|+...|+.+.+..++ ....|++++.|||++|-+. .+-.-+..|++|+.|+++.| .+..... .
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~ 191 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSN 191 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCcccc
Confidence 3333456777777777777766633 4566777777777777333 33344567777788877776 3333221 1
Q ss_pred cccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEecc-CCCCC-cchhccccceeEEEecCCCCC
Q 048566 439 LISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKN-DSILP-EGFLARKLERFKISIGNESFM 516 (760)
Q Consensus 439 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~~~~~~L~~L~l~~~~~~~l 516 (760)
.-..+++|+.|.++.|.+.|.. ....+..+|+|+.|.+..|. ..... +...+..|+.|+|+.|++-.+
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~----------V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKD----------VQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred chhhhhhhheEEeccCCCCHHH----------HHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc
Confidence 1234677888888888776433 23345567778888887764 11111 111346688888887775555
Q ss_pred C
Q 048566 517 P 517 (760)
Q Consensus 517 ~ 517 (760)
+
T Consensus 262 ~ 262 (505)
T KOG3207|consen 262 D 262 (505)
T ss_pred c
Confidence 4
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.48 E-value=1.2e-07 Score=102.41 Aligned_cols=174 Identities=27% Similarity=0.334 Sum_probs=102.6
Q ss_pred CCCCccEEEeeccCCcccccCCchhhcCCC-CceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccc
Q 048566 322 ECPNLEFLCISLKDSSLEINIPGNFFIGMK-KLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLE 399 (760)
Q Consensus 322 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~ 399 (760)
..+.+..|.+. .+.+. .++... ..+. +|+.|+++++.+..+|..++.+++|+.|+++.|.+.+ +...+.+.+|+
T Consensus 114 ~~~~l~~L~l~--~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 114 ELTNLTSLDLD--NNNIT-DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred cccceeEEecC--Ccccc-cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 33455555555 33333 344332 2332 6667777777666666666667777777777776666 33334666677
Q ss_pred eeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCC
Q 048566 400 VLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLP 479 (760)
Q Consensus 400 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 479 (760)
.|+++++++..+|..++.+.+|+.|.++++. ....+.. +.++.++..+.+.++... ..+..++.++
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~------------~~~~~~~~l~ 255 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE------------DLPESIGNLS 255 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee------------eccchhcccc
Confidence 7777777666666665566666666666653 2222222 556666666665555443 1134556666
Q ss_pred CCCEEEEEeccCCCCCcchhccccceeEEEecCC
Q 048566 480 RLTTLEIDVKNDSILPEGFLARKLERFKISIGNE 513 (760)
Q Consensus 480 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 513 (760)
+++.|+++++....++......+++.|+++.+..
T Consensus 256 ~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 256 NLETLDLSNNQISSISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccceeccccccccccccccccCccCEEeccCccc
Confidence 7777777777766666655556777777766553
No 40
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.45 E-value=3e-07 Score=93.26 Aligned_cols=264 Identities=20% Similarity=0.221 Sum_probs=169.5
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCC-CeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLF-DMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLD 79 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlD 79 (760)
.|||||||+|-++.. .. ..| +.+.+++.....+...+.-..+..++.....- +.....+..+.. ++|.++|+|
T Consensus 22 ~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~-~rr~llvld 95 (414)
T COG3903 22 AGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIG-DRRALLVLD 95 (414)
T ss_pred cCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHh-hhhHHHHhc
Confidence 389999999999998 44 447 67888888888787777777777777665421 112334444554 599999999
Q ss_pred CCCCcc-ccccccccccCCCCCcEEEEeeCCH-----------------HHHHHHHHHHh----CCCcCChhhHHHHHHH
Q 048566 80 NIWKHL-DLETVGIPFGEDHKGCKLLLTARDR-----------------KEAWRLFKMMV----GDDVENRELKSTAIDV 137 (760)
Q Consensus 80 dv~~~~-~~~~l~~~~~~~~~gs~IlvTTR~~-----------------~~a~~Lf~~~a----~~~~~~~~~~~~~~~i 137 (760)
|..+.. +-..+...+-.+.+.-.|+.|+|+. +++.++|.-.+ ..-.....-......|
T Consensus 96 ncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~i 175 (414)
T COG3903 96 NCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEI 175 (414)
T ss_pred CcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHHHHH
Confidence 987652 2222333344455566799999998 78999988666 1222223334668899
Q ss_pred HHHhCCcchHHHHHHHHHccCChHHHHHHH----HHhcCCCCCCcCCchhHHHHHHHHhhhcCChhhHhHHHhhhccCcc
Q 048566 138 ARACGGLPIALTTVAMALRSKSLHGWKVSL----GELRTPSMDNFEGVSAETYSSIELSFNHLKDEQLKKIFLLCSQMET 213 (760)
Q Consensus 138 ~~~c~glPLai~~~~~~l~~~~~~~w~~~l----~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~a~fp~ 213 (760)
.+..+|.|+||..+++..+.-...+--..+ ..+.... .....-.....+.+.+||.-|...+ +-.|..++.|..
T Consensus 176 cr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~-r~a~~~~qtl~asl~ws~~lLtgwe-~~~~~rLa~~~g 253 (414)
T COG3903 176 CRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGA-RLAVLRQQTLRASLDWSYALLTGWE-RALFGRLAVFVG 253 (414)
T ss_pred HHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhccc-ccchhHHHhccchhhhhhHhhhhHH-HHHhcchhhhhh
Confidence 999999999999999999887443333222 2232221 1111114557789999999998885 888888888887
Q ss_pred cccHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHhccccccc---CCCceeccHHHHHHHHHHhh
Q 048566 214 RILTLDLFKYSMGLGIFKRVNKMEDARDKLYALVHELRNSCLLIED---SNEQFSMHDVVRDVAISIGC 279 (760)
Q Consensus 214 ~~~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~---~~~~~~mH~lv~~~~~~~~~ 279 (760)
.+... ...|.+.|-... ...-.....+..+++++++.-. ....|+.-+-++.|+..+..
T Consensus 254 ~f~~~--l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 254 GFDLG--LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH 315 (414)
T ss_pred hhccc--HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 76654 334444442210 0111222336667888887543 33456666667777665543
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=3.4e-08 Score=94.49 Aligned_cols=128 Identities=24% Similarity=0.248 Sum_probs=102.9
Q ss_pred CCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCcccc-cccccccee
Q 048566 323 CPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAII-GKLKNLEVL 401 (760)
Q Consensus 323 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~-~~l~~L~~L 401 (760)
...|..++++ .|.++ .+.++. .-.+.+|+|++++|.+..+-. +..+.+|+.|+|++|.+....++ .+|-|.++|
T Consensus 283 Wq~LtelDLS--~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLS--GNLIT-QIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhcccc--ccchh-hhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 4567788888 55554 355544 667899999999999987765 88999999999999998775443 367788999
Q ss_pred ecccCcccccchhhhcCCCCCEEeccccccccccCc-ccccCCCCCCEEEccccccc
Q 048566 402 SFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAP-NLISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 402 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~ 457 (760)
.+.+|.|+.+. ++++|.+|..||+++| ++..+.. ..|++|+.|+++.+.+|++.
T Consensus 358 ~La~N~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcc
Confidence 99999888775 7899999999999998 6665543 45899999999999999875
No 42
>PF05729 NACHT: NACHT domain
Probab=98.42 E-value=1.1e-06 Score=82.04 Aligned_cols=104 Identities=26% Similarity=0.372 Sum_probs=63.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcC----CCeEEEEEecCCCCHH---HHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcE
Q 048566 2 GGIGKTTLVKKVARQAMEDKL----FDMVVFSEVSQIPDIK---RIQQEIAEKLGLELREEVESSRASRIFERLRNEKKI 74 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~ 74 (760)
+|+||||++++++.+...... +..++|+..+...... .+...|..+........ ...+.......+++
T Consensus 9 ~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~ 83 (166)
T PF05729_consen 9 PGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPI-----EELLQELLEKNKRV 83 (166)
T ss_pred CCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhh-----HHHHHHHHHcCCce
Confidence 799999999999998775443 3467788876544322 34444444443221111 11233333346999
Q ss_pred EEEEECCCCccc---------ccccc-ccccC-CCCCcEEEEeeCCH
Q 048566 75 LVVLDNIWKHLD---------LETVG-IPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 75 LlVlDdv~~~~~---------~~~l~-~~~~~-~~~gs~IlvTTR~~ 110 (760)
++|+|++++... +..+. .-++. ..++.+|+||+|..
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~ 130 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPR 130 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCC
Confidence 999999988643 11122 22222 35689999999986
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.33 E-value=6.1e-07 Score=97.00 Aligned_cols=176 Identities=27% Similarity=0.347 Sum_probs=141.9
Q ss_pred ccceEEEeecCCCCCCCCCCCCC--CccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCee
Q 048566 302 RKCKAITLRYDSNRHFPEGLECP--NLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTL 379 (760)
Q Consensus 302 ~~~r~l~l~~~~~~~~~~~~~~~--~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 379 (760)
..+..+.+.++....+++..... +|+.|+++ .+.+. .+|.. ...+++|+.|++++|.+..+|...+.+..|+.|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~--~N~i~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS--DNKIE-SLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccccCccccccchhhccccccc--ccchh-hhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 45777777777768888877654 89999999 55554 35433 489999999999999999999988899999999
Q ss_pred EecCCCCCC-ccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccch
Q 048566 380 CLDQSALGD-IAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEW 458 (760)
Q Consensus 380 ~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~ 458 (760)
+++++.+.. |..++.+.+|++|.++++.+...+..+.++.++..+.+.++ .+..++. .++.+++|+.|++++|.+.
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~-~~~~l~~l~~L~~s~n~i~- 268 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPE-SIGNLSNLETLDLSNNQIS- 268 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeeccc-hhccccccceecccccccc-
Confidence 999999998 55556778899999999988888888999999999998776 5555444 3889999999999999775
Q ss_pred hhhhccccccCCChhhhcCCCCCCEEEEEeccCCCCCc
Q 048566 459 EVERANSKRSNASLDELMHLPRLTTLEIDVKNDSILPE 496 (760)
Q Consensus 459 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 496 (760)
.+..++.+.+++.|+++++.....+.
T Consensus 269 ------------~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 269 ------------SISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ------------ccccccccCccCEEeccCccccccch
Confidence 12338888999999999877654443
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.19 E-value=1.3e-06 Score=65.83 Aligned_cols=58 Identities=33% Similarity=0.489 Sum_probs=33.0
Q ss_pred ccceeecccCcccccch-hhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccc
Q 048566 397 NLEVLSFLMSDIMQLPE-ELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCF 455 (760)
Q Consensus 397 ~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 455 (760)
+|++|++++|++..+|. .+.++++|++|++++| .+..+++..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555553 4455666666666654 4555555555666666666665553
No 45
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.18 E-value=4e-06 Score=82.54 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=57.3
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC--CCHHHHHHHH-----HHHhCccccch--hhHHHHHHHHHHHHcC
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI--PDIKRIQQEI-----AEKLGLELREE--VESSRASRIFERLRNE 71 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i-----~~~l~~~~~~~--~~~~~~~~~~~~l~~~ 71 (760)
.+|+|||||++++|++...+ +|+.++|+.+... +++.++++.+ +..++.+.... ......+.......+|
T Consensus 24 ~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G 102 (249)
T cd01128 24 PPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHG 102 (249)
T ss_pred CCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 37999999999999998754 8999999997766 7899999998 44444322111 0111122222223447
Q ss_pred CcEEEEEECCCCc
Q 048566 72 KKILVVLDNIWKH 84 (760)
Q Consensus 72 ~r~LlVlDdv~~~ 84 (760)
+++++++|++...
T Consensus 103 ~~vll~iDei~r~ 115 (249)
T cd01128 103 KDVVILLDSITRL 115 (249)
T ss_pred CCEEEEEECHHHh
Confidence 9999999999754
No 46
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.18 E-value=4.4e-06 Score=74.52 Aligned_cols=105 Identities=27% Similarity=0.336 Sum_probs=73.8
Q ss_pred CCCcHHHHHHHHHHHHhhhc---CCCeEEEEEecCCCCHHHHHHHHHHHhCccccc-hhhHHHHHHHHHHHHcCCcEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDK---LFDMVVFSEVSQIPDIKRIQQEIAEKLGLELRE-EVESSRASRIFERLRNEKKILVV 77 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~---~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~l~~~~r~LlV 77 (760)
+|+|||+++++++++..... .-..++|+++....+...+.+.|+++++.+... ....+..+.+.+.+.+.+..+||
T Consensus 13 ~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~lv 92 (131)
T PF13401_consen 13 PGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRVVLLV 92 (131)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEEEEE
T ss_pred CCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCCeEEE
Confidence 69999999999999865211 123578999988889999999999999887665 34555667788888765567999
Q ss_pred EECCCCc-c--ccccccccccCCCCCcEEEEeeC
Q 048566 78 LDNIWKH-L--DLETVGIPFGEDHKGCKLLLTAR 108 (760)
Q Consensus 78 lDdv~~~-~--~~~~l~~~~~~~~~gs~IlvTTR 108 (760)
+|+++.. . .++.+..- .+ ..+.+||++.+
T Consensus 93 iDe~~~l~~~~~l~~l~~l-~~-~~~~~vvl~G~ 124 (131)
T PF13401_consen 93 IDEADHLFSDEFLEFLRSL-LN-ESNIKVVLVGT 124 (131)
T ss_dssp EETTHHHHTHHHHHHHHHH-TC-SCBEEEEEEES
T ss_pred EeChHhcCCHHHHHHHHHH-Hh-CCCCeEEEEEC
Confidence 9999865 2 23333221 12 55666776655
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.18 E-value=3.8e-06 Score=95.25 Aligned_cols=102 Identities=22% Similarity=0.356 Sum_probs=59.3
Q ss_pred ceEEEecCCCCC-CChhhhhhhccCCeeEecCCCCCC--ccccccccccceeecccCccc-ccchhhhcCCCCCEEeccc
Q 048566 353 LRVLDFTRMQFS-SFPSSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVLSFLMSDIM-QLPEELGQLNKLRLLDLTN 428 (760)
Q Consensus 353 Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~ 428 (760)
++.|+|+++.+. .+|..++.+.+|++|+|++|.+.. |+.++.+.+|+.|++++|.+. .+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 556666666665 456666666666666666666543 445666666666666666665 4566666666666666666
Q ss_pred cccccccCcccccC-CCCCCEEEccccc
Q 048566 429 CFHLKVIAPNLISS-LTRLEELYMGNCF 455 (760)
Q Consensus 429 ~~~l~~~~~~~i~~-l~~L~~L~l~~~~ 455 (760)
|.....+|.. ++. +.++..+++.+|.
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCCc
Confidence 6322334433 333 2345555555554
No 48
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=4.8e-06 Score=94.41 Aligned_cols=108 Identities=19% Similarity=0.313 Sum_probs=90.8
Q ss_pred CccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCC-CChhhhhhhccCCeeEecCCCCCC--cccccccccccee
Q 048566 325 NLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFS-SFPSSIDLLVNLHTLCLDQSALGD--IAIIGKLKNLEVL 401 (760)
Q Consensus 325 ~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L~~L 401 (760)
.++.|+|. .+.+.+.+|..+ ..+++|+.|+|++|.+. .+|..++.+++|++|++++|.+.. |..++++.+|++|
T Consensus 419 ~v~~L~L~--~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLD--NQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECC--CCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 36777777 566776788764 89999999999999997 789999999999999999999875 6789999999999
Q ss_pred ecccCccc-ccchhhhcC-CCCCEEecccccccccc
Q 048566 402 SFLMSDIM-QLPEELGQL-NKLRLLDLTNCFHLKVI 435 (760)
Q Consensus 402 ~l~~~~i~-~lp~~~~~l-~~L~~L~l~~~~~l~~~ 435 (760)
++++|.+. .+|..++.+ .++..+++.+|..+...
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 99999887 889888764 57788888887655443
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.13 E-value=2.1e-06 Score=64.65 Aligned_cols=13 Identities=23% Similarity=0.486 Sum_probs=4.9
Q ss_pred ceEEEecCCCCCC
Q 048566 353 LRVLDFTRMQFSS 365 (760)
Q Consensus 353 Lr~L~l~~~~~~~ 365 (760)
|++|++++|.+..
T Consensus 3 L~~L~l~~n~l~~ 15 (61)
T PF13855_consen 3 LESLDLSNNKLTE 15 (61)
T ss_dssp ESEEEETSSTESE
T ss_pred CcEEECCCCCCCc
Confidence 3333333333333
No 50
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.13 E-value=0.00034 Score=74.67 Aligned_cols=84 Identities=23% Similarity=0.291 Sum_probs=57.8
Q ss_pred CCCCcHHHHHHHHHHHHhhhc-CC---CeEEEEEecCCCCHHHHHHHHHHHhC---cccc--chhhHHHHHHHHHHHH-c
Q 048566 1 MGGIGKTTLVKKVARQAMEDK-LF---DMVVFSEVSQIPDIKRIQQEIAEKLG---LELR--EEVESSRASRIFERLR-N 70 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~-~F---~~~~wv~~~~~~~~~~~~~~i~~~l~---~~~~--~~~~~~~~~~~~~~l~-~ 70 (760)
.+|+|||+++++++++..... .. -.++|+++....+...++..|++++. .... .....+....+.+.+. .
T Consensus 48 ~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 127 (365)
T TIGR02928 48 KTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNER 127 (365)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 379999999999999764221 11 13678888877788889999999883 3221 1122344555666664 2
Q ss_pred CCcEEEEEECCCCc
Q 048566 71 EKKILVVLDNIWKH 84 (760)
Q Consensus 71 ~~r~LlVlDdv~~~ 84 (760)
+++++||+|+++..
T Consensus 128 ~~~~vlvIDE~d~L 141 (365)
T TIGR02928 128 GDSLIIVLDEIDYL 141 (365)
T ss_pred CCeEEEEECchhhh
Confidence 47899999999877
No 51
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.10 E-value=7.7e-06 Score=83.83 Aligned_cols=83 Identities=13% Similarity=0.191 Sum_probs=55.3
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC--CHHHHHHHHHHHhCccccchhhH-------HHHHHHHHHHHcC
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP--DIKRIQQEIAEKLGLELREEVES-------SRASRIFERLRNE 71 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~-------~~~~~~~~~l~~~ 71 (760)
.||+||||||+++|++...+ +|+.++||.+.+.. .+.+++++|...+-...-++... ...+.-......|
T Consensus 177 ppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G 255 (416)
T PRK09376 177 PPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHG 255 (416)
T ss_pred CCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 37999999999999998864 89999999998877 77888888763221111011110 1111112222357
Q ss_pred CcEEEEEECCCCc
Q 048566 72 KKILVVLDNIWKH 84 (760)
Q Consensus 72 ~r~LlVlDdv~~~ 84 (760)
++++|++|++...
T Consensus 256 ~dVlL~iDsItR~ 268 (416)
T PRK09376 256 KDVVILLDSITRL 268 (416)
T ss_pred CCEEEEEEChHHH
Confidence 9999999999654
No 52
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.6e-07 Score=89.96 Aligned_cols=55 Identities=25% Similarity=0.333 Sum_probs=33.8
Q ss_pred CceEEEecCCCCC--CChhhhhhhccCCeeEecCCCCCCc--cccccccccceeecccC
Q 048566 352 KLRVLDFTRMQFS--SFPSSIDLLVNLHTLCLDQSALGDI--AIIGKLKNLEVLSFLMS 406 (760)
Q Consensus 352 ~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~ 406 (760)
.|++|||+...++ .+-..++.+.+|+.|.+.+..+.++ ..+.+=.+|+.|+++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 4777777777776 4445566677777777777766652 33444445555555554
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=1e-05 Score=55.65 Aligned_cols=38 Identities=34% Similarity=0.555 Sum_probs=21.6
Q ss_pred CceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCc
Q 048566 352 KLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDI 389 (760)
Q Consensus 352 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~ 389 (760)
+|++|++++|.++.+|..+++|++|++|++++|.+.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45666666666666665566666666666666655543
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=1.8e-06 Score=93.38 Aligned_cols=108 Identities=28% Similarity=0.354 Sum_probs=86.0
Q ss_pred hcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCccccccccccceeecccCcccccchhhhcCCCCCEEec
Q 048566 347 FIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDL 426 (760)
Q Consensus 347 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l 426 (760)
+..+++|..|++.++.+..+...+..+.+|++|++++|.|..+..+..+..|+.|++.+|.|..+. ++..+++|+.+++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence 467788889999998888877668888899999999999888888888888999999998887766 4566888888888
Q ss_pred cccccccccCc-ccccCCCCCCEEEccccccc
Q 048566 427 TNCFHLKVIAP-NLISSLTRLEELYMGNCFIE 457 (760)
Q Consensus 427 ~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~ 457 (760)
++| .+..+.. . ...+.+|+.+.+.++.+.
T Consensus 170 ~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 170 SYN-RIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred Ccc-hhhhhhhhh-hhhccchHHHhccCCchh
Confidence 887 4555544 2 367888888888887664
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.88 E-value=2.9e-06 Score=83.68 Aligned_cols=152 Identities=19% Similarity=0.203 Sum_probs=67.5
Q ss_pred CCCCCccEEEeeccCCccc-ccCCchhhcCCCCceEEEecCCCCC----CChhhh-------hhhccCCeeEecCCCCCC
Q 048566 321 LECPNLEFLCISLKDSSLE-INIPGNFFIGMKKLRVLDFTRMQFS----SFPSSI-------DLLVNLHTLCLDQSALGD 388 (760)
Q Consensus 321 ~~~~~Lr~L~l~~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~~~----~lp~~i-------~~l~~L~~L~l~~~~l~~ 388 (760)
..+..+..++++++.-... ...-...+.+.++||..++++-... ++|+.+ -.+++|++|+||.|.+..
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 3455566666663221110 0111223455566666666653221 333332 233456666666665432
Q ss_pred --cc----ccccccccceeecccCcccccch-hhhcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhh
Q 048566 389 --IA----IIGKLKNLEVLSFLMSDIMQLPE-ELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVE 461 (760)
Q Consensus 389 --~~----~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 461 (760)
++ -+..+..|++|.|.+|++....- .++. .|.+|.. ...+++-+.|+++...+|...
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~~----------~kk~~~~~~Lrv~i~~rNrle---- 170 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELAV----------NKKAASKPKLRVFICGRNRLE---- 170 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHHH----------HhccCCCcceEEEEeeccccc----
Confidence 22 23345555555555555432110 1110 1111110 001334566777766666543
Q ss_pred hccccccCCChhhhcCCCCCCEEEEEeccC
Q 048566 462 RANSKRSNASLDELMHLPRLTTLEIDVKND 491 (760)
Q Consensus 462 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 491 (760)
..........++..+.|+.+.+..+.+
T Consensus 171 ---n~ga~~~A~~~~~~~~leevr~~qN~I 197 (382)
T KOG1909|consen 171 ---NGGATALAEAFQSHPTLEEVRLSQNGI 197 (382)
T ss_pred ---cccHHHHHHHHHhccccceEEEecccc
Confidence 111122234455666677777665554
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=1e-06 Score=84.63 Aligned_cols=128 Identities=21% Similarity=0.172 Sum_probs=60.5
Q ss_pred CCCCceEEEecCCC-CCC--ChhhhhhhccCCeeEecCCCCCCc------cccccccccceeecccCc----ccccchhh
Q 048566 349 GMKKLRVLDFTRMQ-FSS--FPSSIDLLVNLHTLCLDQSALGDI------AIIGKLKNLEVLSFLMSD----IMQLPEEL 415 (760)
Q Consensus 349 ~l~~Lr~L~l~~~~-~~~--lp~~i~~l~~L~~L~l~~~~l~~~------~~~~~l~~L~~L~l~~~~----i~~lp~~~ 415 (760)
+-.+|+.|+++.++ +++ +--.+.++..|..|++++|.+..+ ..++ .+|..|+++||. ...+..-.
T Consensus 232 kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~ 309 (419)
T KOG2120|consen 232 KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLV 309 (419)
T ss_pred ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHH
Confidence 34455555555543 221 122344555555555555553321 1122 345555555551 11222223
Q ss_pred hcCCCCCEEeccccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEe
Q 048566 416 GQLNKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDV 488 (760)
Q Consensus 416 ~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 488 (760)
.++++|.+||+++|..++.-....+.+++.|++|.++.|+.. ....+-++...+.|..|++.+
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i----------~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI----------IPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC----------ChHHeeeeccCcceEEEEecc
Confidence 455666666666655444422233555666666666666543 111133445555566665553
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=5.1e-07 Score=96.67 Aligned_cols=128 Identities=23% Similarity=0.305 Sum_probs=91.7
Q ss_pred CceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCccccccccccceeecccCcccccchh-hhcCCCCCEEeccccc
Q 048566 352 KLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEE-LGQLNKLRLLDLTNCF 430 (760)
Q Consensus 352 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~ 430 (760)
.|.+-+.++|.+..+-.++.-++.|+.|+|++|++.+...+..|++|++|||+.|.++.+|.- ...+ +|+.|.+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN- 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN- 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeeccc-
Confidence 467777788888777778888888888888888887766777888888888888888877742 2223 3888888887
Q ss_pred cccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCC
Q 048566 431 HLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSI 493 (760)
Q Consensus 431 ~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 493 (760)
.+..+-. +.+|.+|+.|++++|-+.+ ...+.-+..|..|+.|.+.+|....
T Consensus 243 ~l~tL~g--ie~LksL~~LDlsyNll~~----------hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 243 ALTTLRG--IENLKSLYGLDLSYNLLSE----------HSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HHHhhhh--HHhhhhhhccchhHhhhhc----------chhhhHHHHHHHHHHHhhcCCcccc
Confidence 5666544 7788888888888876541 1224445566677777777776543
No 58
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.80 E-value=4.5e-06 Score=90.34 Aligned_cols=147 Identities=22% Similarity=0.255 Sum_probs=104.0
Q ss_pred CCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCccc-cccccccceeecccCcccccchhhhcCCCCCEEecc
Q 048566 349 GMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAI-IGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLT 427 (760)
Q Consensus 349 ~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~-~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 427 (760)
.+..+..+.+..+.+.+.-..++.+.+|.+|++..|.+..+.. +..+.+|++|++++|.|+.+. ++..++.|+.|++.
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence 4455666667777777655667788888888888888888776 888888888888888888775 46777778888888
Q ss_pred ccccccccCcccccCCCCCCEEEccccccchhhhhccccccCCChhh--hcCCCCCCEEEEEeccCCCCCcchhccccce
Q 048566 428 NCFHLKVIAPNLISSLTRLEELYMGNCFIEWEVERANSKRSNASLDE--LMHLPRLTTLEIDVKNDSILPEGFLARKLER 505 (760)
Q Consensus 428 ~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~ 505 (760)
+| .+..+.. +..+++|+.+++++|.+.. +.. +..+.+++.+.+.++....+........+..
T Consensus 149 ~N-~i~~~~~--~~~l~~L~~l~l~~n~i~~-------------ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~ 212 (414)
T KOG0531|consen 149 GN-LISDISG--LESLKSLKLLDLSYNRIVD-------------IENDELSELISLEELDLGGNSIREIEGLDLLKKLVL 212 (414)
T ss_pred cC-cchhccC--CccchhhhcccCCcchhhh-------------hhhhhhhhccchHHHhccCCchhcccchHHHHHHHH
Confidence 87 5666554 5568888888888887651 222 4667777777777776665555444444444
Q ss_pred eEEEecC
Q 048566 506 FKISIGN 512 (760)
Q Consensus 506 L~l~~~~ 512 (760)
+++..+.
T Consensus 213 ~~l~~n~ 219 (414)
T KOG0531|consen 213 LSLLDNK 219 (414)
T ss_pred hhccccc
Confidence 4444444
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=2.1e-05 Score=88.90 Aligned_cols=83 Identities=25% Similarity=0.302 Sum_probs=46.6
Q ss_pred CCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC---cccccccccc
Q 048566 322 ECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD---IAIIGKLKNL 398 (760)
Q Consensus 322 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~---~~~~~~l~~L 398 (760)
-+|.|++|.+.+ ..+...--...+.++++|+.||+++++++.+ ..+++|++|+.|.+.+-.+.. +..+.+|++|
T Consensus 146 ~LPsL~sL~i~~--~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 146 MLPSLRSLVISG--RQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hCcccceEEecC--ceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 466666666663 1111000112345666666666666666655 556666666666666655443 3456666666
Q ss_pred ceeecccCc
Q 048566 399 EVLSFLMSD 407 (760)
Q Consensus 399 ~~L~l~~~~ 407 (760)
++||+|..+
T Consensus 223 ~vLDIS~~~ 231 (699)
T KOG3665|consen 223 RVLDISRDK 231 (699)
T ss_pred Ceeeccccc
Confidence 666666653
No 60
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.71 E-value=6.1e-06 Score=81.47 Aligned_cols=185 Identities=20% Similarity=0.221 Sum_probs=125.6
Q ss_pred CCCCCccEEEeeccCCcccc-cCCchhhcCCCCceEEEecCCCCCCC--------------hhhhhhhccCCeeEecCCC
Q 048566 321 LECPNLEFLCISLKDSSLEI-NIPGNFFIGMKKLRVLDFTRMQFSSF--------------PSSIDLLVNLHTLCLDQSA 385 (760)
Q Consensus 321 ~~~~~Lr~L~l~~~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~l--------------p~~i~~l~~L~~L~l~~~~ 385 (760)
..+++|++++|+.+.-.-.+ .-...+++++..|+.|.|.+|.+... ...++.-+.||++....|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 46789999999954322221 11234567888999999999987622 2234556789999999999
Q ss_pred CCC-c-----cccccccccceeecccCccc-----ccchhhhcCCCCCEEeccccccccccC----cccccCCCCCCEEE
Q 048566 386 LGD-I-----AIIGKLKNLEVLSFLMSDIM-----QLPEELGQLNKLRLLDLTNCFHLKVIA----PNLISSLTRLEELY 450 (760)
Q Consensus 386 l~~-~-----~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~~~----~~~i~~l~~L~~L~ 450 (760)
+.. + ..+...+.|+.+.+..|+|. -+-..+.++++|+.||+.+|+ ++.-. ...+..+++|++|+
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeec
Confidence 765 2 34666788999999998765 334567899999999999984 33211 23366788999999
Q ss_pred ccccccchhhhhccccccCCChhhhc-CCCCCCEEEEEeccCCCCCcch------hccccceeEEEecCC
Q 048566 451 MGNCFIEWEVERANSKRSNASLDELM-HLPRLTTLEIDVKNDSILPEGF------LARKLERFKISIGNE 513 (760)
Q Consensus 451 l~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~------~~~~L~~L~l~~~~~ 513 (760)
+++|.+. .....+....+. ..++|+.|.+.+|.+..-.... ..+.|++|.++.|.+
T Consensus 248 l~dcll~-------~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 248 LGDCLLE-------NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccc-------cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 9999775 222233344443 3688999999988754322211 137888888888874
No 61
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.69 E-value=0.0015 Score=68.38 Aligned_cols=139 Identities=14% Similarity=0.073 Sum_probs=72.2
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccc----cc--hhhHHHHHHHHHHHHcCCcE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLEL----RE--EVESSRASRIFERLRNEKKI 74 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~--~~~~~~~~~~~~~l~~~~r~ 74 (760)
.+|+||||+|+.+++..... + .++..+. ......+..++..+.... ++ .-.....+.+...+. +.+.
T Consensus 59 ppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~ 131 (328)
T PRK00080 59 PPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRL 131 (328)
T ss_pred CCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcce
Confidence 47999999999999987532 2 1222221 112223334444443211 00 001112223334443 4667
Q ss_pred EEEEECCCCccccccccccccCCCCCcEEEEeeCCH---------------------HHHHHHHHHHhCCCcCChhhHHH
Q 048566 75 LVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTARDR---------------------KEAWRLFKMMVGDDVENRELKST 133 (760)
Q Consensus 75 LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~~a~~Lf~~~a~~~~~~~~~~~~ 133 (760)
.+|+|+..+...+.. .+| +.+-|..|||.. ++..+++.+.++.... .--.+.
T Consensus 132 ~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~~~~ 204 (328)
T PRK00080 132 DIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV-EIDEEG 204 (328)
T ss_pred eeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcCHHH
Confidence 777777655543321 112 134455555533 7788888877733211 112356
Q ss_pred HHHHHHHhCCcchHHHHHHH
Q 048566 134 AIDVARACGGLPIALTTVAM 153 (760)
Q Consensus 134 ~~~i~~~c~glPLai~~~~~ 153 (760)
...|++.|+|.|-.+..+..
T Consensus 205 ~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 205 ALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred HHHHHHHcCCCchHHHHHHH
Confidence 88999999999954444433
No 62
>PF13173 AAA_14: AAA domain
Probab=97.69 E-value=5.4e-05 Score=66.99 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=59.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
-|+||||++++++.+.. ....++++++.......... .+..+.+.+... +++.+|++|+|
T Consensus 11 R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~~~~~~~~~~~-~~~~~i~iDEi 70 (128)
T PF13173_consen 11 RGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PDLLEYFLELIK-PGKKYIFIDEI 70 (128)
T ss_pred CCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hhhHHHHHHhhc-cCCcEEEEehh
Confidence 48999999999998865 23567888776533211000 001223333322 37889999999
Q ss_pred CCccccccccccccCCCCCcEEEEeeCCH
Q 048566 82 WKHLDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
....+|......+-+.++..+|++|+...
T Consensus 71 q~~~~~~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 71 QYLPDWEDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred hhhccHHHHHHHHHHhccCceEEEEccch
Confidence 99888887766666666677899999875
No 63
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.65 E-value=0.00015 Score=74.94 Aligned_cols=82 Identities=13% Similarity=0.212 Sum_probs=55.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC--CCHHHHHHHHHHH-----hCccccch-hh-HHHHHHHHHHHHcCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI--PDIKRIQQEIAEK-----LGLELREE-VE-SSRASRIFERLRNEK 72 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~-----l~~~~~~~-~~-~~~~~~~~~~l~~~~ 72 (760)
+|.||||||+.+++.... ++|+..+||.+.+. .++.++++.+... ++.+.... .. ....+.......+|+
T Consensus 177 ~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~Gk 255 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKK 255 (415)
T ss_pred CCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCC
Confidence 699999999999999874 48999999999865 6899999998543 23221110 01 111222222223589
Q ss_pred cEEEEEECCCCc
Q 048566 73 KILVVLDNIWKH 84 (760)
Q Consensus 73 r~LlVlDdv~~~ 84 (760)
+++|++|.+...
T Consensus 256 dVVLlIDEitR~ 267 (415)
T TIGR00767 256 DVVILLDSITRL 267 (415)
T ss_pred CeEEEEEChhHH
Confidence 999999999654
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.65 E-value=6.3e-05 Score=51.71 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=17.5
Q ss_pred cCCeeEecCCCCCCc-cccccccccceeecccCccccc
Q 048566 375 NLHTLCLDQSALGDI-AIIGKLKNLEVLSFLMSDIMQL 411 (760)
Q Consensus 375 ~L~~L~l~~~~l~~~-~~~~~l~~L~~L~l~~~~i~~l 411 (760)
+|++|++++|.++++ +.+++|++|++|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 455555555555552 2255555555555555554443
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=9.3e-05 Score=76.92 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=68.8
Q ss_pred CccceeEEEeccccCccccccccCccccC-CCcEEeeccCCCceeeecCCCCcccccccccchhhhcccccccccccccc
Q 048566 560 GINNVECLWLDKLQGIGDVLFNLDTEGFS-QLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRL 638 (760)
Q Consensus 560 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~ 638 (760)
.+.+++.|.+.+| .+...+ .+| +|++|.+.+|.+++.+|+ ...++|++|.+.+|.++..++
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP------~LP~sLtsL~Lsnc~nLtsLP~-------~LP~nLe~L~Ls~Cs~L~sLP---- 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLP------VLPNELTEITIENCNNLTTLPG-------SIPEGLEKLTVCHCPEISGLP---- 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccC------CCCCCCcEEEccCCCCcccCCc-------hhhhhhhheEccCcccccccc----
Confidence 3467778888777 333332 133 688888888888766642 123578888888887666543
Q ss_pred cccccCCccEEEEec--CCCCCcccchhhhhccCCCcEEEEecCCcchhhhccccccccccccccccccCeeecCCCccc
Q 048566 639 KVESFNQLKNIEAYN--CDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLPEV 716 (760)
Q Consensus 639 ~~~~~~~L~~L~l~~--C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L 716 (760)
+.|+.|.+.+ |..+..+| ++|++|.+.++....... ....-.++|+.|++.+|..+
T Consensus 112 -----~sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~~n~~~~~~---------lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 112 -----ESVRSLEIKGSATDSIKNVP--------NGLTSLSINSYNPENQAR---------IDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred -----cccceEEeCCCCCcccccCc--------chHhheeccccccccccc---------cccccCCcccEEEecCCCcc
Confidence 3467776642 22233333 367777775432111100 00012267999999999866
Q ss_pred c
Q 048566 717 T 717 (760)
Q Consensus 717 ~ 717 (760)
.
T Consensus 170 ~ 170 (426)
T PRK15386 170 I 170 (426)
T ss_pred c
Confidence 3
No 66
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.62 E-value=0.0098 Score=61.64 Aligned_cols=139 Identities=14% Similarity=0.087 Sum_probs=73.8
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccc----c--chhhHHHHHHHHHHHHcCCcE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLEL----R--EEVESSRASRIFERLRNEKKI 74 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~--~~~~~~~~~~~~~~l~~~~r~ 74 (760)
.+|+|||+||+++++..... | ..+..+..... ..+...+..++... + +.-.....+.++..+. +.+.
T Consensus 38 p~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~-~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~-~~~~ 110 (305)
T TIGR00635 38 PPGLGKTTLAHIIANEMGVN--L---KITSGPALEKP-GDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAME-DFRL 110 (305)
T ss_pred CCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCc-hhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHh-hhhe
Confidence 47999999999999886532 2 12222211111 22223333333221 0 0001122233444444 4677
Q ss_pred EEEEECCCCccccccccccccCCCCCcEEEEeeCCH---------------------HHHHHHHHHHhCCCcCChhhHHH
Q 048566 75 LVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTARDR---------------------KEAWRLFKMMVGDDVENRELKST 133 (760)
Q Consensus 75 LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~~a~~Lf~~~a~~~~~~~~~~~~ 133 (760)
.+|+|+.....++... .| +..-|..|||.. ++..+++.+.++.... .--.+.
T Consensus 111 ~~v~~~~~~~~~~~~~---~~---~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~a 183 (305)
T TIGR00635 111 DIVIGKGPSARSVRLD---LP---PFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEA 183 (305)
T ss_pred eeeeccCccccceeec---CC---CeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHH
Confidence 7888887666554421 11 134455555532 7888888877732111 111356
Q ss_pred HHHHHHHhCCcchHHHHHHH
Q 048566 134 AIDVARACGGLPIALTTVAM 153 (760)
Q Consensus 134 ~~~i~~~c~glPLai~~~~~ 153 (760)
...|++.|+|.|-.+..++.
T Consensus 184 l~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 184 ALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred HHHHHHHhCCCcchHHHHHH
Confidence 77899999999966544444
No 67
>PRK06893 DNA replication initiation factor; Validated
Probab=97.59 E-value=0.00025 Score=69.78 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVS 32 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~ 32 (760)
+|+|||+||+++++....+ ...+.|+++.
T Consensus 48 ~G~GKThL~~ai~~~~~~~--~~~~~y~~~~ 76 (229)
T PRK06893 48 KSSGKSHLLKAVSNHYLLN--QRTAIYIPLS 76 (229)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCeEEeeHH
Confidence 6999999999999997643 3456788764
No 68
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.56 E-value=0.00018 Score=71.48 Aligned_cols=147 Identities=20% Similarity=0.305 Sum_probs=75.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHH---------HHHHHhCcccc-----------chhhHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQ---------EIAEKLGLELR-----------EEVESSRA 61 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~---------~i~~~l~~~~~-----------~~~~~~~~ 61 (760)
.|+|||+|++++.+..... .+ .++|+...+......... .+.+.+..... ........
T Consensus 29 rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (234)
T PF01637_consen 29 RGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSAL 106 (234)
T ss_dssp TTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--H
T ss_pred CcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHH
Confidence 5999999999999987432 22 345555544332211111 11122211110 12223445
Q ss_pred HHHHHHHHc-CCcEEEEEECCCCcc-cc---c----cccccc---cCCCCCcEEEEeeCCH-------------------
Q 048566 62 SRIFERLRN-EKKILVVLDNIWKHL-DL---E----TVGIPF---GEDHKGCKLLLTARDR------------------- 110 (760)
Q Consensus 62 ~~~~~~l~~-~~r~LlVlDdv~~~~-~~---~----~l~~~~---~~~~~gs~IlvTTR~~------------------- 110 (760)
..+.+.+.. +++++||+||++... .. . .+...+ ....+.+.|+++|...
T Consensus 107 ~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~ 186 (234)
T PF01637_consen 107 ERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHI 186 (234)
T ss_dssp HHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EE
T ss_pred HHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceE
Confidence 566666653 356999999998765 11 1 121112 2233444454444432
Q ss_pred -------HHHHHHHHHHhCCCcCChhhHHHHHHHHHHhCCcchHHHH
Q 048566 111 -------KEAWRLFKMMVGDDVENRELKSTAIDVARACGGLPIALTT 150 (760)
Q Consensus 111 -------~~a~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~ 150 (760)
+++++++.........-+.-.+..++|...+||.|..|..
T Consensus 187 ~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 187 ELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 7899999887632211111245568999999999987754
No 69
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=3.6e-05 Score=87.07 Aligned_cols=134 Identities=25% Similarity=0.239 Sum_probs=93.8
Q ss_pred CCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCC--CChhhhhhhccCCeeEecCCCCCCcccccccccccee
Q 048566 324 PNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFS--SFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVL 401 (760)
Q Consensus 324 ~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L 401 (760)
.+|+.|++.+... +...+|..+..-++.|+.|.+.+-.+. ++.....++++|+.||+++++++.+.++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~-~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSEL-FSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccch-hhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 3566666665322 222466666677889999999887664 4455667888999999999999888899999999999
Q ss_pred ecccCcccccc--hhhhcCCCCCEEecccccccccc--Cc---ccccCCCCCCEEEccccccch
Q 048566 402 SFLMSDIMQLP--EELGQLNKLRLLDLTNCFHLKVI--AP---NLISSLTRLEELYMGNCFIEW 458 (760)
Q Consensus 402 ~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~~--~~---~~i~~l~~L~~L~l~~~~~~~ 458 (760)
.+.+-.+..-. ..+-+|++|+.||+|........ .. +.-..|++|+.|+.++..+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 88876665332 46778999999999874322221 00 111348899999988776553
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.54 E-value=0.00016 Score=75.13 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=26.4
Q ss_pred CCCceEEEecCCCCCCChhhhhhhccCCeeEecCCC-CCC-ccccccccccceeecccC-cccccc
Q 048566 350 MKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSA-LGD-IAIIGKLKNLEVLSFLMS-DIMQLP 412 (760)
Q Consensus 350 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~-l~~-~~~~~~l~~L~~L~l~~~-~i~~lp 412 (760)
+++++.|++++|.++.+|. -..+|+.|.+++|. +.. |..+ ..+|++|++++| .+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 4455555555555555541 12235555555543 322 2222 134555555555 444444
No 71
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.53 E-value=0.0079 Score=67.87 Aligned_cols=84 Identities=19% Similarity=0.136 Sum_probs=56.3
Q ss_pred CCCCcHHHHHHHHHHHHhhh---cCCC--eEEEEEecCCCCHHHHHHHHHHHhCccccc--hhhHHHHHHHHHHHHc--C
Q 048566 1 MGGIGKTTLVKKVARQAMED---KLFD--MVVFSEVSQIPDIKRIQQEIAEKLGLELRE--EVESSRASRIFERLRN--E 71 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~---~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~--~ 71 (760)
.+|.|||+.++.|.++...+ .... .+++|++....+...+++.|++++....+. ....+....++..+.. +
T Consensus 789 ~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r 868 (1164)
T PTZ00112 789 MPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNR 868 (1164)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccc
Confidence 47999999999999875421 1222 267888877778889999999988443321 1223445556655532 2
Q ss_pred CcEEEEEECCCCc
Q 048566 72 KKILVVLDNIWKH 84 (760)
Q Consensus 72 ~r~LlVlDdv~~~ 84 (760)
...+||||+|+..
T Consensus 869 ~v~IIILDEID~L 881 (1164)
T PTZ00112 869 NVSILIIDEIDYL 881 (1164)
T ss_pred cceEEEeehHhhh
Confidence 3459999999865
No 72
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.46 E-value=3.7e-06 Score=90.35 Aligned_cols=105 Identities=20% Similarity=0.225 Sum_probs=48.0
Q ss_pred cCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCcccccc-ccccceeecccCcccccchhhhcCCCCCEEec
Q 048566 348 IGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGK-LKNLEVLSFLMSDIMQLPEELGQLNKLRLLDL 426 (760)
Q Consensus 348 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~-l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l 426 (760)
+-++.|+.|+|++|.+.++- .+..|++|++|||++|.+...+.++. -.+|+.|.+++|.++++- ++.+|.+|+.||+
T Consensus 184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~LDl 261 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGLDL 261 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhhhhhccch
Confidence 44445555555555554443 44555555555555555544322221 112555555555544442 4555555555555
Q ss_pred cccccccccCc-ccccCCCCCCEEEccccc
Q 048566 427 TNCFHLKVIAP-NLISSLTRLEELYMGNCF 455 (760)
Q Consensus 427 ~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~ 455 (760)
++| .+..... ..+..|..|.+|++.+|+
T Consensus 262 syN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 262 SYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 554 2221110 113344455555555544
No 73
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.43 E-value=0.011 Score=63.90 Aligned_cols=124 Identities=19% Similarity=0.212 Sum_probs=66.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+||||+|+.+++.... . |+.++....-....+++++ ........+++.+|++|++
T Consensus 45 pGtGKTtLA~~ia~~~~~--~-----~~~l~a~~~~~~~ir~ii~----------------~~~~~~~~g~~~vL~IDEi 101 (413)
T PRK13342 45 PGTGKTTLARIIAGATDA--P-----FEALSAVTSGVKDLREVIE----------------EARQRRSAGRRTILFIDEI 101 (413)
T ss_pred CCCCHHHHHHHHHHHhCC--C-----EEEEecccccHHHHHHHHH----------------HHHHhhhcCCceEEEEech
Confidence 799999999999987642 2 2333222111111122221 1111222358899999999
Q ss_pred CCcc--ccccccccccCCCCCcEEEE--eeCCH----------------------HHHHHHHHHHhCC-CcCC-hhhHHH
Q 048566 82 WKHL--DLETVGIPFGEDHKGCKLLL--TARDR----------------------KEAWRLFKMMVGD-DVEN-RELKST 133 (760)
Q Consensus 82 ~~~~--~~~~l~~~~~~~~~gs~Ilv--TTR~~----------------------~~a~~Lf~~~a~~-~~~~-~~~~~~ 133 (760)
+... +.+.+...+. .|..++| ||.+. ++..+++.+.+.. .... .--.+.
T Consensus 102 ~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~a 178 (413)
T PRK13342 102 HRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEA 178 (413)
T ss_pred hhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHH
Confidence 8653 3344433322 2444444 34433 6777777765521 1100 122355
Q ss_pred HHHHHHHhCCcchHHHHH
Q 048566 134 AIDVARACGGLPIALTTV 151 (760)
Q Consensus 134 ~~~i~~~c~glPLai~~~ 151 (760)
.+.|++.++|-+..+..+
T Consensus 179 l~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 179 LDALARLANGDARRALNL 196 (413)
T ss_pred HHHHHHhCCCCHHHHHHH
Confidence 677888888887655443
No 74
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.0001 Score=71.17 Aligned_cols=82 Identities=27% Similarity=0.316 Sum_probs=59.7
Q ss_pred cCCCCceEEEecCCCCC---CChhhhhhhccCCeeEecCCCCCC-cccc-ccccccceeecccCccc--ccchhhhcCCC
Q 048566 348 IGMKKLRVLDFTRMQFS---SFPSSIDLLVNLHTLCLDQSALGD-IAII-GKLKNLEVLSFLMSDIM--QLPEELGQLNK 420 (760)
Q Consensus 348 ~~l~~Lr~L~l~~~~~~---~lp~~i~~l~~L~~L~l~~~~l~~-~~~~-~~l~~L~~L~l~~~~i~--~lp~~~~~l~~ 420 (760)
..+..++.|||.+|.++ ++..-+.++++|++|+++.|.+.. +.+. -.+.+|++|-+.++.+. .+...+..++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 45677888888888876 445566788888888888888765 4554 36778888888887543 55556677777
Q ss_pred CCEEecccc
Q 048566 421 LRLLDLTNC 429 (760)
Q Consensus 421 L~~L~l~~~ 429 (760)
++.|+++.|
T Consensus 148 vtelHmS~N 156 (418)
T KOG2982|consen 148 VTELHMSDN 156 (418)
T ss_pred hhhhhhccc
Confidence 777777776
No 75
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.29 E-value=0.0045 Score=69.24 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=47.9
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH---------------------HHHHHHHHHHhCCCcCC
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR---------------------KEAWRLFKMMVGDDVEN 127 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~~a~~Lf~~~a~~~~~~ 127 (760)
++.-++|+|+++... .++.+...+.......++|+||++. ++..+.+.+.+......
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 355688999998774 4677766665555577888888877 45555555544221111
Q ss_pred hhhHHHHHHHHHHhCCcc-hHHHH
Q 048566 128 RELKSTAIDVARACGGLP-IALTT 150 (760)
Q Consensus 128 ~~~~~~~~~i~~~c~glP-Lai~~ 150 (760)
--.+..+.|++.++|-. -|+..
T Consensus 198 -id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 198 -FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11244567777887743 45444
No 76
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.28 E-value=0.00091 Score=60.71 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=51.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+||||+|+++++..... -..+++++..+..........+... ............++.++|+||+
T Consensus 28 ~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~lilDe~ 93 (151)
T cd00009 28 PGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------------LVRLLFELAEKAKPGVLFIDEI 93 (151)
T ss_pred CCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh------------hHhHHHHhhccCCCeEEEEeCh
Confidence 6999999999999987521 2457787766543322211111100 0011111111247889999999
Q ss_pred CCc--c---ccccccccccCC---CCCcEEEEeeCCH
Q 048566 82 WKH--L---DLETVGIPFGED---HKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~--~---~~~~l~~~~~~~---~~gs~IlvTTR~~ 110 (760)
+.. . .+..+...+... ..+..||+||...
T Consensus 94 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 94 DSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred hhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 864 1 122211121111 3577888888864
No 77
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.023 Score=58.23 Aligned_cols=186 Identities=17% Similarity=0.175 Sum_probs=95.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+||||||+.++...... | +.++-..+-.+-++++++. -++....|++.+|++|.|
T Consensus 57 PG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdlr~i~e~----------------a~~~~~~gr~tiLflDEI 113 (436)
T COG2256 57 PGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDLREIIEE----------------ARKNRLLGRRTILFLDEI 113 (436)
T ss_pred CCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHHHHHHHH----------------HHHHHhcCCceEEEEehh
Confidence 7999999999999876532 3 4444333323333333322 222233379999999999
Q ss_pred CCcc--ccccccccccCCCCCcEEEE--eeCCH----------------------HHHHHHHHHHh-----CCCcCChhh
Q 048566 82 WKHL--DLETVGIPFGEDHKGCKLLL--TARDR----------------------KEAWRLFKMMV-----GDDVENREL 130 (760)
Q Consensus 82 ~~~~--~~~~l~~~~~~~~~gs~Ilv--TTR~~----------------------~~a~~Lf~~~a-----~~~~~~~~~ 130 (760)
..-. +-+.| +|.-.+|.-|+| ||-++ +|-.+++.+.+ +-......+
T Consensus 114 HRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i 190 (436)
T COG2256 114 HRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVL 190 (436)
T ss_pred hhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccC
Confidence 7543 22323 344556776666 55555 56666666633 111111112
Q ss_pred -HHHHHHHHHHhCCcchHH-HH--HHHHHccC----ChHHHHHHHHHhcCCCCCCcCCchhHHHHHHHHhhhcCChhhHh
Q 048566 131 -KSTAIDVARACGGLPIAL-TT--VAMALRSK----SLHGWKVSLGELRTPSMDNFEGVSAETYSSIELSFNHLKDEQLK 202 (760)
Q Consensus 131 -~~~~~~i~~~c~glPLai-~~--~~~~l~~~----~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk 202 (760)
++.-+-+++.++|---+. .. ++..+... ..+..++++++-. ...+...+..-++..++.-|...-+.+ .
T Consensus 191 ~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~-~~~Dk~gD~hYdliSA~hKSvRGSD~d--A 267 (436)
T COG2256 191 DEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRS-ARFDKDGDAHYDLISALHKSVRGSDPD--A 267 (436)
T ss_pred CHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhh-hccCCCcchHHHHHHHHHHhhccCCcC--H
Confidence 345566777777754322 22 12222222 2344444444311 112222333556777777887777665 3
Q ss_pred HHHhhhccCccccc
Q 048566 203 KIFLLCSQMETRIL 216 (760)
Q Consensus 203 ~cfl~~a~fp~~~~ 216 (760)
..+++.-++..+..
T Consensus 268 ALyylARmi~~GeD 281 (436)
T COG2256 268 ALYYLARMIEAGED 281 (436)
T ss_pred HHHHHHHHHhcCCC
Confidence 44444445554443
No 78
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=0.00034 Score=64.05 Aligned_cols=104 Identities=25% Similarity=0.334 Sum_probs=47.3
Q ss_pred CCeeEecCCCCCCccccccccccceeecccCcccccchhhhc-CCCCCEEeccccccccccCc-ccccCCCCCCEEEccc
Q 048566 376 LHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPEELGQ-LNKLRLLDLTNCFHLKVIAP-NLISSLTRLEELYMGN 453 (760)
Q Consensus 376 L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~~~~-l~~L~~L~l~~~~~l~~~~~-~~i~~l~~L~~L~l~~ 453 (760)
...++|+.|.+.....+..+..|.+|.++.|+|..+...+.. +++|..|.+.+| ++..+.. .-+..++.|++|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecC
Confidence 344445555444444445555555555555555555444443 244555555554 2222111 1134455555555555
Q ss_pred cccchhhhhccccccCCChhhhcCCCCCCEEEEEe
Q 048566 454 CFIEWEVERANSKRSNASLDELMHLPRLTTLEIDV 488 (760)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 488 (760)
|... ...+...-.+..+++|+.|+.+.
T Consensus 123 Npv~--------~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 123 NPVE--------HKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred Cchh--------cccCceeEEEEecCcceEeehhh
Confidence 5432 11112222344555666665553
No 79
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=9.1e-05 Score=71.58 Aligned_cols=84 Identities=15% Similarity=0.207 Sum_probs=36.4
Q ss_pred cCCCcEEeeccCCCceeeecCCCCcccccccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccc----
Q 048566 587 FSQLKLLWVQNNPDIFCIVDSREMVACDAFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFW---- 662 (760)
Q Consensus 587 l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~---- 662 (760)
||++..+.+..|+ +++.-. ......||.+-.|.+.. .++.+|..-. ....||.|..|.+.+.|-+..+..
T Consensus 198 Fpnv~sv~v~e~P-lK~~s~---ek~se~~p~~~~LnL~~-~~idswasvD-~Ln~f~~l~dlRv~~~Pl~d~l~~~err 271 (418)
T KOG2982|consen 198 FPNVNSVFVCEGP-LKTESS---EKGSEPFPSLSCLNLGA-NNIDSWASVD-ALNGFPQLVDLRVSENPLSDPLRGGERR 271 (418)
T ss_pred cccchheeeecCc-ccchhh---cccCCCCCcchhhhhcc-cccccHHHHH-HHcCCchhheeeccCCcccccccCCcce
Confidence 5666665555553 221111 11233455555555542 1222221100 233466666666666655443321
Q ss_pred hhhhhccCCCcEEE
Q 048566 663 LSTTKCLPRLERIA 676 (760)
Q Consensus 663 ~~~~~~l~~L~~L~ 676 (760)
.-.+..|++++.|+
T Consensus 272 ~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 272 FLLIARLTKVQVLN 285 (418)
T ss_pred EEEEeeccceEEec
Confidence 01234555555554
No 80
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.20 E-value=0.005 Score=61.29 Aligned_cols=147 Identities=20% Similarity=0.220 Sum_probs=90.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCC----eEEEEEecCCCCHHHHHHHHHHHhCccccchhh-HHHHHHHHHHHHcCCcEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFD----MVVFSEVSQIPDIKRIQQEIAEKLGLELREEVE-SSRASRIFERLRNEKKILV 76 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~----~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~l~~~~r~Ll 76 (760)
+|+|||++++++.+.+-....=+ .|+.|.+...++...++..|+.+++.+....+. ......+.+-++.-+-=+|
T Consensus 70 snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmL 149 (302)
T PF05621_consen 70 SNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRML 149 (302)
T ss_pred CCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 58999999999998764321111 377888889999999999999999998754332 2333334444443345578
Q ss_pred EEECCCCcc-----ccccccccc---cCCCCCcEEEEeeCCH-------------------------HHHHHHHHHHh--
Q 048566 77 VLDNIWKHL-----DLETVGIPF---GEDHKGCKLLLTARDR-------------------------KEAWRLFKMMV-- 121 (760)
Q Consensus 77 VlDdv~~~~-----~~~~l~~~~---~~~~~gs~IlvTTR~~-------------------------~~a~~Lf~~~a-- 121 (760)
|+|.+.+.- +-.++...+ -+.-.=+-|.|-|++. +|...|+....
T Consensus 150 IIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~ 229 (302)
T PF05621_consen 150 IIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERA 229 (302)
T ss_pred EeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHh
Confidence 889997641 112222222 2233345577777765 56666665433
Q ss_pred -C-CCcCChhhHHHHHHHHHHhCCcchHH
Q 048566 122 -G-DDVENRELKSTAIDVARACGGLPIAL 148 (760)
Q Consensus 122 -~-~~~~~~~~~~~~~~i~~~c~glPLai 148 (760)
. .....-..++++..|.+.++|+.--+
T Consensus 230 LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 230 LPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred CCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 1 11111223567888888888876433
No 81
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.013 Score=61.51 Aligned_cols=84 Identities=25% Similarity=0.339 Sum_probs=64.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCc-cccchhhHHHHHHHHHHHHc-CCcEEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGL-ELREEVESSRASRIFERLRN-EKKILVVLD 79 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~l~~-~~r~LlVlD 79 (760)
.|.|||+.++.+.++......=..++.|++....+...++.+|+++++. +.......+....+.+.+.. ++.++||||
T Consensus 51 ~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLD 130 (366)
T COG1474 51 TGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILD 130 (366)
T ss_pred CCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEc
Confidence 6999999999999997643221227899999999999999999999963 23334455566677777754 689999999
Q ss_pred CCCCcc
Q 048566 80 NIWKHL 85 (760)
Q Consensus 80 dv~~~~ 85 (760)
+++...
T Consensus 131 Eid~L~ 136 (366)
T COG1474 131 EVDALV 136 (366)
T ss_pred chhhhc
Confidence 998764
No 82
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.08 E-value=0.034 Score=55.86 Aligned_cols=87 Identities=23% Similarity=0.297 Sum_probs=53.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+||||||+-+....+... ..||..|-...-..-.+.|.++-. .. ..+. ++|..|++|.|
T Consensus 171 pG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq-------------~~-~~l~-krkTilFiDEi 231 (554)
T KOG2028|consen 171 PGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ-------------NE-KSLT-KRKTILFIDEI 231 (554)
T ss_pred CCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH-------------HH-Hhhh-cceeEEEeHHh
Confidence 79999999999998876433 558887765544444555554421 11 1122 58999999998
Q ss_pred CCcc--ccccccccccCCCCCcEEEE--eeCCH
Q 048566 82 WKHL--DLETVGIPFGEDHKGCKLLL--TARDR 110 (760)
Q Consensus 82 ~~~~--~~~~l~~~~~~~~~gs~Ilv--TTR~~ 110 (760)
..-. |-+. .+|--.+|.-++| ||-++
T Consensus 232 HRFNksQQD~---fLP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 232 HRFNKSQQDT---FLPHVENGDITLIGATTENP 261 (554)
T ss_pred hhhhhhhhhc---ccceeccCceEEEecccCCC
Confidence 6442 2222 2444556665554 55555
No 83
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.0048 Score=64.06 Aligned_cols=92 Identities=20% Similarity=0.313 Sum_probs=54.8
Q ss_pred CCCcHHHHHHHHHHHHh----hhcCCCeEEEEEec-CCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEE
Q 048566 2 GGIGKTTLVKKVARQAM----EDKLFDMVVFSEVS-QIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILV 76 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~----~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~Ll 76 (760)
.|+||||+|++++...- ...|+|...|.... ....+.+ .+++.+.+.... . .+++=++
T Consensus 35 ~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~~p---------------~-~~~~kv~ 97 (313)
T PRK05564 35 DGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNKKP---------------Y-EGDKKVI 97 (313)
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhcCc---------------c-cCCceEE
Confidence 69999999999998652 23466665554422 1122222 222223221110 1 1355566
Q ss_pred EEECCCC--ccccccccccccCCCCCcEEEEeeCCH
Q 048566 77 VLDNIWK--HLDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 77 VlDdv~~--~~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
|+||++. .+.++.+...+.....++.+|++|.+.
T Consensus 98 iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~ 133 (313)
T PRK05564 98 IIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENL 133 (313)
T ss_pred EEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 6666654 356788888887777888999998766
No 84
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.95 E-value=0.0024 Score=63.01 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=47.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||++|++++++... ....+++++++.-.+. . ..+...+. +.-+||+||+
T Consensus 47 ~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~~~~~------~-----------------~~~~~~~~--~~~lLvIDdi 99 (226)
T TIGR03420 47 SGSGKSHLLQAACAAAEE--RGKSAIYLPLAELAQA------D-----------------PEVLEGLE--QADLVCLDDV 99 (226)
T ss_pred CCCCHHHHHHHHHHHHHh--cCCcEEEEeHHHHHHh------H-----------------HHHHhhcc--cCCEEEEeCh
Confidence 699999999999998653 2445667776542210 0 01112222 2348999999
Q ss_pred CCcc---cc-ccccccccC-CCCCcEEEEeeCCH
Q 048566 82 WKHL---DL-ETVGIPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~---~~-~~l~~~~~~-~~~gs~IlvTTR~~ 110 (760)
+... .| +.+...+.. ...+.+||+||+..
T Consensus 100 ~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 100 EAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred hhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 8653 22 233332221 12344799998865
No 85
>PRK08727 hypothetical protein; Validated
Probab=96.94 E-value=0.0059 Score=60.17 Aligned_cols=86 Identities=23% Similarity=0.251 Sum_probs=49.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||.||+++++....+ ...+.++++.+ .... .....+.+. +--+||+||+
T Consensus 50 ~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~-----------------~~~~~~~l~--~~dlLiIDDi 102 (233)
T PRK08727 50 AGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGR-----------------LRDALEALE--GRSLVALDGL 102 (233)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhh-----------------HHHHHHHHh--cCCEEEEeCc
Confidence 6999999999999986633 33566776432 1111 111223333 4569999999
Q ss_pred CCcc---ccccccccccC--CCCCcEEEEeeCCHHHHH
Q 048566 82 WKHL---DLETVGIPFGE--DHKGCKLLLTARDRKEAW 114 (760)
Q Consensus 82 ~~~~---~~~~l~~~~~~--~~~gs~IlvTTR~~~~a~ 114 (760)
.... .|+.....+.+ ..+|..||+||+..-+.|
T Consensus 103 ~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 103 ESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred ccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 7542 23222112221 234666999999884444
No 86
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=5.9e-05 Score=72.13 Aligned_cols=100 Identities=19% Similarity=0.197 Sum_probs=64.2
Q ss_pred CCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCCccccccccccceeecccCcccccch--hhhcCCCCCEEecc
Q 048566 350 MKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGDIAIIGKLKNLEVLSFLMSDIMQLPE--ELGQLNKLRLLDLT 427 (760)
Q Consensus 350 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~ 427 (760)
+.+.+.|++-+|.+..+. -..+++.|++|.|+-|.|..+..+..|++|+.|+|+.|.|..+.+ .+.++++|+.|-+.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 445666777777766543 234677777777777777777777777777777777777765542 45667777777776
Q ss_pred ccccccccCc----ccccCCCCCCEEE
Q 048566 428 NCFHLKVIAP----NLISSLTRLEELY 450 (760)
Q Consensus 428 ~~~~l~~~~~----~~i~~l~~L~~L~ 450 (760)
.|+....-+. ..+.-|++|+.|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 6654444332 1234456666654
No 87
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.89 E-value=0.00026 Score=60.51 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=37.7
Q ss_pred CCCceEEEecCCCCCCChhhhhhhc-cCCeeEecCCCCCC-ccccccccccceeecccCcccccchhhhcCCCCCEEecc
Q 048566 350 MKKLRVLDFTRMQFSSFPSSIDLLV-NLHTLCLDQSALGD-IAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLT 427 (760)
Q Consensus 350 l~~Lr~L~l~~~~~~~lp~~i~~l~-~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~ 427 (760)
..+|...++++|.++++|..+.... .++.|++.+|.+.+ |..+..++.|+.|+++.|.+...|+.+..|.+|-.|+..
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 3344445555555555554443322 44444444444444 444444444555555555444444444444444444444
Q ss_pred cc
Q 048566 428 NC 429 (760)
Q Consensus 428 ~~ 429 (760)
++
T Consensus 132 ~n 133 (177)
T KOG4579|consen 132 EN 133 (177)
T ss_pred CC
Confidence 43
No 88
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.84 E-value=0.0073 Score=58.81 Aligned_cols=93 Identities=25% Similarity=0.315 Sum_probs=55.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||.|.+++++.......=..++++++ .++...+...+.. .....++..++ .-=+|++||+
T Consensus 43 ~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~--------~~~~~~~~~~~--~~DlL~iDDi 106 (219)
T PF00308_consen 43 SGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRD--------GEIEEFKDRLR--SADLLIIDDI 106 (219)
T ss_dssp TTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHT--------TSHHHHHHHHC--TSSEEEEETG
T ss_pred CCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHc--------ccchhhhhhhh--cCCEEEEecc
Confidence 599999999999999764322234777754 3555555555432 12344556664 5568889999
Q ss_pred CCcc---cccc-cccccc-CCCCCcEEEEeeCCH
Q 048566 82 WKHL---DLET-VGIPFG-EDHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~---~~~~-l~~~~~-~~~~gs~IlvTTR~~ 110 (760)
+... .|+. +..-+. ....|.+||+|++..
T Consensus 107 ~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 107 QFLAGKQRTQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred hhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 7652 2322 211111 123466899999776
No 89
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.022 Score=65.28 Aligned_cols=75 Identities=13% Similarity=0.103 Sum_probs=44.0
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH---------------------HHHHHHHHHHhCCCcCC
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR---------------------KEAWRLFKMMVGDDVEN 127 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~~a~~Lf~~~a~~~~~~ 127 (760)
+++-++|+|++... +..+.|...+.......++|++|.+. ++..+.+.+.+.... .
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I 196 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-L 196 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-C
Confidence 57789999999876 34566655555444456666666555 444444544431111 1
Q ss_pred hhhHHHHHHHHHHhCCcch
Q 048566 128 RELKSTAIDVARACGGLPI 146 (760)
Q Consensus 128 ~~~~~~~~~i~~~c~glPL 146 (760)
.--.+..+.|++.++|.|-
T Consensus 197 ~~edeAL~lIA~~S~Gd~R 215 (944)
T PRK14949 197 PFEAEALTLLAKAANGSMR 215 (944)
T ss_pred CCCHHHHHHHHHHcCCCHH
Confidence 1113456778888888764
No 90
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.82 E-value=0.01 Score=64.40 Aligned_cols=95 Identities=13% Similarity=0.132 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||+|++++++.......-..+++++. .++...+...++... +..+..+++++ +.-+||+||+
T Consensus 150 ~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~------~~~~~~~~~~~--~~dvLiIDDi 215 (450)
T PRK14087 150 SGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH------KEIEQFKNEIC--QNDVLIIDDV 215 (450)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh------hHHHHHHHHhc--cCCEEEEecc
Confidence 599999999999997653222234556654 356666666654211 22344555554 4558889999
Q ss_pred CCcc---cc-ccccccccC-CCCCcEEEEeeCCH
Q 048566 82 WKHL---DL-ETVGIPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~---~~-~~l~~~~~~-~~~gs~IlvTTR~~ 110 (760)
.... .+ +.+..-+.. ...|..||+|+...
T Consensus 216 q~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~ 249 (450)
T PRK14087 216 QFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKS 249 (450)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 7542 22 223222211 23345688887665
No 91
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.012 Score=64.96 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=27.3
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
++.-++|+|+++.. ..++.|...+.......++|++|.+.
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep 164 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP 164 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence 56779999999876 35666666665544556666666655
No 92
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.016 Score=61.42 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=27.8
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+++... .++.+...+.......++|++|.+.
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~ 159 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCCh
Confidence 356699999998764 4566665555555567788877665
No 93
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.052 Score=58.98 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=27.2
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+++... ..+.+...+....+..++|++|.+.
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~ 156 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEV 156 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 466789999997653 4566666666555667777777554
No 94
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.77 E-value=0.015 Score=55.38 Aligned_cols=40 Identities=8% Similarity=0.101 Sum_probs=27.4
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+.+-++|+||++... ..+.+...+....+.+.+|++|++.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~ 136 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSP 136 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 466789999997653 3556666665555566777777765
No 95
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.74 E-value=0.019 Score=62.88 Aligned_cols=40 Identities=8% Similarity=0.125 Sum_probs=27.6
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+++.. ..++.+...+.......++|++|...
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~ 168 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEV 168 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCCh
Confidence 47778999999875 45777766666555566666655444
No 96
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.00017 Score=69.11 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=28.1
Q ss_pred cCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC---ccccccccccceeecccC
Q 048566 348 IGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD---IAIIGKLKNLEVLSFLMS 406 (760)
Q Consensus 348 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~ 406 (760)
.+|+.|.||.|+-|.++.+- .+..|++|+.|+|+.|.|.+ +..+.++++|+.|.|..|
T Consensus 38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 45555555555555554432 24445555555555555443 233444555555555443
No 97
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.72 E-value=0.039 Score=64.81 Aligned_cols=149 Identities=13% Similarity=0.119 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhCCCcCChhhHHHHHHHHHHhCCcchHHHHHHHHHccC-------ChHHHHHHHHHhcCCCCCCcCCchh
Q 048566 111 KEAWRLFKMMVGDDVENRELKSTAIDVARACGGLPIALTTVAMALRSK-------SLHGWKVSLGELRTPSMDNFEGVSA 183 (760)
Q Consensus 111 ~~a~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~ 183 (760)
.+...+.....+..... ..+..+.|+++..|.|+-+..+-..+... +...|..-...+.... . ..
T Consensus 222 ~d~~~lV~~~l~~~~~~--~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~-----~-~~ 293 (849)
T COG3899 222 ADTNQLVAATLGCTKLL--PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILA-----T-TD 293 (849)
T ss_pred hhHHHHHHHHhCCcccc--cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCch-----h-hH
Confidence 56666666555542222 23668899999999999999998888763 3445554333332211 1 22
Q ss_pred HHHHHHHHhhhcCChhhHhHHHhhhccCcccccHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHHhccccccc----
Q 048566 184 ETYSSIELSFNHLKDEQLKKIFLLCSQMETRILTLDLFKYSMGLGIFKRVNKMEDARDKLYALVHELRNSCLLIED---- 259 (760)
Q Consensus 184 ~~~~~l~~sy~~L~~~~lk~cfl~~a~fp~~~~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~sll~~~---- 259 (760)
.+...+..-.+.||.. .++.....|++-..+...-+...+-. .....+..+.+.|....++...
T Consensus 294 ~vv~~l~~rl~kL~~~-t~~Vl~~AA~iG~~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr 361 (849)
T COG3899 294 AVVEFLAARLQKLPGT-TREVLKAAACIGNRFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYR 361 (849)
T ss_pred HHHHHHHHHHhcCCHH-HHHHHHHHHHhCccCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccc
Confidence 2566788899999998 59999999999888776644444321 1223333445555444444321
Q ss_pred ---CCCce---eccHHHHHHHHHHhh
Q 048566 260 ---SNEQF---SMHDVVRDVAISIGC 279 (760)
Q Consensus 260 ---~~~~~---~mH~lv~~~~~~~~~ 279 (760)
..... -.|+.+++.+-....
T Consensus 362 ~~~~~~~~~Y~F~H~~vqqaaY~~i~ 387 (849)
T COG3899 362 FGSNVDIATYKFLHDRVQQAAYNLIP 387 (849)
T ss_pred cccccchhhHHhhHHHHHHHHhccCc
Confidence 11112 468888887765443
No 98
>PRK04195 replication factor C large subunit; Provisional
Probab=96.71 E-value=0.096 Score=57.90 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=45.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+||||+|++++++.. |+. +-++++...+.. ..+.++....... .+...++-+||+|++
T Consensus 48 pG~GKTtla~ala~el~----~~~-ielnasd~r~~~-~i~~~i~~~~~~~--------------sl~~~~~kvIiIDEa 107 (482)
T PRK04195 48 PGVGKTSLAHALANDYG----WEV-IELNASDQRTAD-VIERVAGEAATSG--------------SLFGARRKLILLDEV 107 (482)
T ss_pred CCCCHHHHHHHHHHHcC----CCE-EEEcccccccHH-HHHHHHHHhhccC--------------cccCCCCeEEEEecC
Confidence 79999999999999863 333 334444432222 2222222211100 011026789999999
Q ss_pred CCccc------cccccccccCCCCCcEEEEeeCCH
Q 048566 82 WKHLD------LETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~~------~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+.... ++.+...+.. .+..||+|+.+.
T Consensus 108 D~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~ 140 (482)
T PRK04195 108 DGIHGNEDRGGARAILELIKK--AKQPIILTANDP 140 (482)
T ss_pred cccccccchhHHHHHHHHHHc--CCCCEEEeccCc
Confidence 87532 3344333332 233466666544
No 99
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.67 E-value=0.00098 Score=63.80 Aligned_cols=114 Identities=18% Similarity=0.121 Sum_probs=59.2
Q ss_pred cccccccceeecccCccc-ccc----hhhhcCCCCCEEeccccccccccCccc-------------ccCCCCCCEEEccc
Q 048566 392 IGKLKNLEVLSFLMSDIM-QLP----EELGQLNKLRLLDLTNCFHLKVIAPNL-------------ISSLTRLEELYMGN 453 (760)
Q Consensus 392 ~~~l~~L~~L~l~~~~i~-~lp----~~~~~l~~L~~L~l~~~~~l~~~~~~~-------------i~~l~~L~~L~l~~ 453 (760)
+-+|++|+..+++.|-+. +.| .-|.+-+.|.+|.+++| .+.-+..+- ..+-+.|++.....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 344555555555555322 112 23445556666666655 343322221 22447778877766
Q ss_pred cccchhhhhccccccCCChhhhcCCCCCCEEEEEeccCCCC--Ccch-----hccccceeEEEecCC
Q 048566 454 CFIEWEVERANSKRSNASLDELMHLPRLTTLEIDVKNDSIL--PEGF-----LARKLERFKISIGNE 513 (760)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~-----~~~~L~~L~l~~~~~ 513 (760)
|.+. +.........+....+|+.+.+..|.+..- .... .+++|+.|++..|.+
T Consensus 167 NRle-------ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 167 NRLE-------NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred chhc-------cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 6553 111111223345557888888887775432 1111 237788888776653
No 100
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.67 E-value=0.00048 Score=58.93 Aligned_cols=80 Identities=20% Similarity=0.339 Sum_probs=65.4
Q ss_pred CCcccccCCchhhcCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccceeecccCcccccch
Q 048566 335 DSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVLSFLMSDIMQLPE 413 (760)
Q Consensus 335 ~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~ 413 (760)
+|.+. ++|..+-..++.+..|++.+|.+.++|..+..++.|+.|+++.|++.. |..+..|.+|-.|+..++.+.++|-
T Consensus 62 ~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 62 DNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred cchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 44444 577777677778889999999999999889999999999999999766 7777789999999999988888876
Q ss_pred hh
Q 048566 414 EL 415 (760)
Q Consensus 414 ~~ 415 (760)
.+
T Consensus 141 dl 142 (177)
T KOG4579|consen 141 DL 142 (177)
T ss_pred HH
Confidence 53
No 101
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.60 E-value=0.0053 Score=54.47 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=37.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCC-cEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEK-KILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~-r~LlVlDd 80 (760)
+|+||||+|+.++++... .++.++.+...+. ........+..+.+...... +.+|++||
T Consensus 7 ~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~vl~iDe 66 (132)
T PF00004_consen 7 PGTGKTTLARALAQYLGF-----PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPCVLFIDE 66 (132)
T ss_dssp TTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSEEEEEET
T ss_pred CCCCeeHHHHHHHhhccc-----ccccccccccccc---------------cccccccccccccccccccccceeeeecc
Confidence 699999999999999641 2455554431100 11112233344444443333 89999999
Q ss_pred CCCc
Q 048566 81 IWKH 84 (760)
Q Consensus 81 v~~~ 84 (760)
++..
T Consensus 67 ~d~l 70 (132)
T PF00004_consen 67 IDKL 70 (132)
T ss_dssp GGGT
T ss_pred chhc
Confidence 9765
No 102
>PRK08116 hypothetical protein; Validated
Probab=96.59 E-value=0.0063 Score=61.17 Aligned_cols=94 Identities=21% Similarity=0.239 Sum_probs=53.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||.||.++++....+ ...++++++ ..++..+...+..... .....+.+.+.+ -. ||||||+
T Consensus 123 ~GtGKThLa~aia~~l~~~--~~~v~~~~~------~~ll~~i~~~~~~~~~-----~~~~~~~~~l~~-~d-lLviDDl 187 (268)
T PRK08116 123 VGTGKTYLAACIANELIEK--GVPVIFVNF------PQLLNRIKSTYKSSGK-----EDENEIIRSLVN-AD-LLILDDL 187 (268)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEEH------HHHHHHHHHHHhcccc-----ccHHHHHHHhcC-CC-EEEEecc
Confidence 6999999999999998743 345677764 3455555544432211 112334555542 33 8999999
Q ss_pred CC--cccccc--ccccccC-CCCCcEEEEeeCCH
Q 048566 82 WK--HLDLET--VGIPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~--~~~~~~--l~~~~~~-~~~gs~IlvTTR~~ 110 (760)
.. ..+|.. +...+.. ..+|..+||||...
T Consensus 188 g~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 43 334422 2211111 23455699999865
No 103
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.58 E-value=0.003 Score=66.76 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=51.4
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHc--CCcEEEEE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRN--EKKILVVL 78 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~--~~r~LlVl 78 (760)
++|+|||++|+++++.......|+.+.||.++...+...+...+.-. +. .-........++.+.... ++++++|+
T Consensus 202 ppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~v--gy~~~~G~f~~~~~~A~~~p~~~~vliI 278 (459)
T PRK11331 202 PPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GV--GFRRKDGIFYNFCQQAKEQPEKKYVFII 278 (459)
T ss_pred CCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CC--CeEecCchHHHHHHHHHhcccCCcEEEE
Confidence 68999999999999988766678889999999888766554422100 00 001011112222222221 37899999
Q ss_pred ECCCCc
Q 048566 79 DNIWKH 84 (760)
Q Consensus 79 Ddv~~~ 84 (760)
|++...
T Consensus 279 DEINRa 284 (459)
T PRK11331 279 DEINRA 284 (459)
T ss_pred ehhhcc
Confidence 999765
No 104
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.57 E-value=0.027 Score=61.88 Aligned_cols=40 Identities=10% Similarity=0.140 Sum_probs=25.6
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+++.. ..++.+...+........+|++|...
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~ 156 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEP 156 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCCh
Confidence 46779999999865 34666666655544455566666543
No 105
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.56 E-value=0.019 Score=63.57 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=27.7
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+|+.. ...+.+...+.....+.++|++|.+.
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~ 158 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDP 158 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECCh
Confidence 46778999999876 34556655555544566788888765
No 106
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.56 E-value=0.014 Score=60.41 Aligned_cols=82 Identities=13% Similarity=0.262 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCe-EEEEEecCCC-CHHHHHHHHHHHhCccccchhh------HHHHHHHHHHH-HcCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDM-VVFSEVSQIP-DIKRIQQEIAEKLGLELREEVE------SSRASRIFERL-RNEK 72 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~------~~~~~~~~~~l-~~~~ 72 (760)
+|+|||||++++++.... ++-+. ++|+-+.+.. .+.++++.+...+..+..++.. ...+..+.+++ .+|+
T Consensus 142 pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~Gk 220 (380)
T PRK12608 142 PRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGK 220 (380)
T ss_pred CCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 699999999999998763 23344 5787787665 7788888888776554321111 11222333333 3489
Q ss_pred cEEEEEECCCCc
Q 048566 73 KILVVLDNIWKH 84 (760)
Q Consensus 73 r~LlVlDdv~~~ 84 (760)
+++||+|++...
T Consensus 221 dVVLvlDsltr~ 232 (380)
T PRK12608 221 DVVILLDSLTRL 232 (380)
T ss_pred CEEEEEeCcHHH
Confidence 999999999654
No 107
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.47 E-value=0.0073 Score=54.20 Aligned_cols=82 Identities=24% Similarity=0.162 Sum_probs=45.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+||||+|+.+++..... ...++.++.+........... ...................+.......+..+|++|++
T Consensus 11 ~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei 87 (148)
T smart00382 11 PGSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEI 87 (148)
T ss_pred CCCcHHHHHHHHHhccCCC--CCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 6999999999999887633 234677766554322222111 1111111111122233444555554323499999999
Q ss_pred CCccc
Q 048566 82 WKHLD 86 (760)
Q Consensus 82 ~~~~~ 86 (760)
+....
T Consensus 88 ~~~~~ 92 (148)
T smart00382 88 TSLLD 92 (148)
T ss_pred cccCC
Confidence 87743
No 108
>PF14516 AAA_35: AAA-like domain
Probab=96.46 E-value=0.22 Score=51.98 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=83.0
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-----CCHHHHHHHHH----HHhCccccc---hh----h-HHHHHHHH
Q 048566 3 GIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-----PDIKRIQQEIA----EKLGLELRE---EV----E-SSRASRIF 65 (760)
Q Consensus 3 GiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-----~~~~~~~~~i~----~~l~~~~~~---~~----~-~~~~~~~~ 65 (760)
.+|||+|..++.+..... .+ .++++++..- .+....++.+. ++++.+..- ++ . ......+.
T Consensus 41 q~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~ 118 (331)
T PF14516_consen 41 QMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFE 118 (331)
T ss_pred cCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHH
Confidence 489999999999887743 34 4558887642 24555555544 455433210 00 1 11112233
Q ss_pred HHHH-c-CCcEEEEEECCCCcccc----ccccccc----cCC----CCCcE--EEEeeCCH-------------------
Q 048566 66 ERLR-N-EKKILVVLDNIWKHLDL----ETVGIPF----GED----HKGCK--LLLTARDR------------------- 110 (760)
Q Consensus 66 ~~l~-~-~~r~LlVlDdv~~~~~~----~~l~~~~----~~~----~~gs~--IlvTTR~~------------------- 110 (760)
+.+. . +++.+|++|+|+..-.. +++...+ ... ...+- |++.+...
T Consensus 119 ~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L 198 (331)
T PF14516_consen 119 EYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIEL 198 (331)
T ss_pred HHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeC
Confidence 3322 1 58999999999865221 1111111 000 00111 22222111
Q ss_pred -----HHHHHHHHHHhCCCcCChhhHHHHHHHHHHhCCcchHHHHHHHHHccC
Q 048566 111 -----KEAWRLFKMMVGDDVENRELKSTAIDVARACGGLPIALTTVAMALRSK 158 (760)
Q Consensus 111 -----~~a~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~l~~~ 158 (760)
+|..+|..++-.... ....++|.+..||+|--+..++..+...
T Consensus 199 ~~Ft~~ev~~L~~~~~~~~~-----~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 199 PDFTPEEVQELAQRYGLEFS-----QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCCCHHHHHHHHHhhhccCC-----HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 788888876642211 1228899999999999999999888765
No 109
>PLN03025 replication factor C subunit; Provisional
Probab=96.46 E-value=0.022 Score=59.20 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=48.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCC-eEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFD-MVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDd 80 (760)
+|+||||+|+.+++.... ..|. .++-++.+...+.. ..+++++.+..... .+..++.-++|+|+
T Consensus 43 ~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~~-~vr~~i~~~~~~~~-------------~~~~~~~kviiiDE 107 (319)
T PLN03025 43 PGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGID-VVRNKIKMFAQKKV-------------TLPPGRHKIVILDE 107 (319)
T ss_pred CCCCHHHHHHHHHHHHhc-ccCccceeeecccccccHH-HHHHHHHHHHhccc-------------cCCCCCeEEEEEec
Confidence 699999999999998642 2232 23333333322222 12222221100000 00113567999999
Q ss_pred CCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 81 IWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 81 v~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
++... ..+.+...+......+++++++...
T Consensus 108 ~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~ 139 (319)
T PLN03025 108 ADSMTSGAQQALRRTMEIYSNTTRFALACNTS 139 (319)
T ss_pred hhhcCHHHHHHHHHHHhcccCCceEEEEeCCc
Confidence 98763 2233433333344567777777654
No 110
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.45 E-value=0.024 Score=60.25 Aligned_cols=17 Identities=47% Similarity=0.565 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+|||++|+++++...
T Consensus 165 pGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 165 PGTGKTLLAKAVAHETN 181 (364)
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 79999999999999765
No 111
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.40 E-value=0.015 Score=57.34 Aligned_cols=85 Identities=18% Similarity=0.182 Sum_probs=47.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||+||+++++..... -..+.++++..... ....+.+.+. +--+|++||+
T Consensus 54 ~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~-----------------------~~~~~~~~~~--~~dlliiDdi 106 (235)
T PRK08084 54 EGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW-----------------------FVPEVLEGME--QLSLVCIDNI 106 (235)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh-----------------------hhHHHHHHhh--hCCEEEEeCh
Confidence 6999999999999987632 34567777643100 0011222332 2247899999
Q ss_pred CCc---ccccc-ccccccC-CCCC-cEEEEeeCCHHHH
Q 048566 82 WKH---LDLET-VGIPFGE-DHKG-CKLLLTARDRKEA 113 (760)
Q Consensus 82 ~~~---~~~~~-l~~~~~~-~~~g-s~IlvTTR~~~~a 113 (760)
... .+|+. +...+.. ...| .++|+||+.....
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQ 144 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHH
Confidence 754 23432 2111211 1123 3699999977444
No 112
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.37 E-value=0.094 Score=57.84 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=27.0
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
++.-++|+|+|+.. +..+.+...+.......++|++|.+.
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~ 159 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDH 159 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECCh
Confidence 46678999999875 34566655555555567777766655
No 113
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.36 E-value=0.036 Score=58.38 Aligned_cols=108 Identities=18% Similarity=0.251 Sum_probs=50.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCC-eEEEEEecCCCCH--HHHHH--HHHHHhCcc-ccchhhHHHHHHHHHHHHc-----
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFD-MVVFSEVSQIPDI--KRIQQ--EIAEKLGLE-LREEVESSRASRIFERLRN----- 70 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~-~~~wv~~~~~~~~--~~~~~--~i~~~l~~~-~~~~~~~~~~~~~~~~l~~----- 70 (760)
.|+||||+|+++++..... .+. ..+.++++...+. ..+.. ...+.++.. .......+....+.+....
T Consensus 45 ~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (337)
T PRK12402 45 PGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLS 123 (337)
T ss_pred CCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCC
Confidence 6999999999999886532 222 2455555432100 00000 000000000 0000011222233222211
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+.+-+||+||++... ..+.+...+.......++|+||...
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 244589999997653 2333433333334456788887654
No 114
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.36 E-value=0.0055 Score=56.36 Aligned_cols=61 Identities=21% Similarity=0.353 Sum_probs=27.3
Q ss_pred cCCCCceEEEecCCCCCCChhhhhh-hccCCeeEecCCCCCC---ccccccccccceeecccCcc
Q 048566 348 IGMKKLRVLDFTRMQFSSFPSSIDL-LVNLHTLCLDQSALGD---IAIIGKLKNLEVLSFLMSDI 408 (760)
Q Consensus 348 ~~l~~Lr~L~l~~~~~~~lp~~i~~-l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~i 408 (760)
..++.|..|.+.+|.++.+-..+.. +++|..|.+.+|.+.. +..+..++.|++|.+-+|.+
T Consensus 61 p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence 4455555555555555544333322 3335555555554332 22333344444444444433
No 115
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.35 E-value=0.001 Score=74.07 Aligned_cols=83 Identities=30% Similarity=0.302 Sum_probs=42.6
Q ss_pred hccCCeeEecCCC-CCC--c-cccccccccceeecccC--ccccc----chhhhcCCCCCEEeccccccccccCcccccC
Q 048566 373 LVNLHTLCLDQSA-LGD--I-AIIGKLKNLEVLSFLMS--DIMQL----PEELGQLNKLRLLDLTNCFHLKVIAPNLISS 442 (760)
Q Consensus 373 l~~L~~L~l~~~~-l~~--~-~~~~~l~~L~~L~l~~~--~i~~l----p~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~ 442 (760)
+++|+.|.+.++. +.. . +....+++|+.|++++| .+... ......+++|+.|+++.|..+....-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5667777776665 333 2 44556677777777663 11111 1223344666666666664333332222222
Q ss_pred -CCCCCEEEccccc
Q 048566 443 -LTRLEELYMGNCF 455 (760)
Q Consensus 443 -l~~L~~L~l~~~~ 455 (760)
+++|++|.+.+|.
T Consensus 267 ~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 267 RCPNLETLSLSNCS 280 (482)
T ss_pred hCCCcceEccCCCC
Confidence 5566666655554
No 116
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.047 Score=60.19 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=26.8
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+++... ..+.+...+.......++|++|.+.
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~ 159 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDY 159 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECCh
Confidence 577799999998653 4566666666555566666666544
No 117
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.30 E-value=0.053 Score=58.84 Aligned_cols=93 Identities=15% Similarity=0.322 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCC-eEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFD-MVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDd 80 (760)
+|+|||+||+++++.... .+.+ .++|++.. .+..++...+... ......++++. +.-+||+||
T Consensus 139 ~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~~------~f~~~~~~~~~~~--------~~~~f~~~~~~-~~dvLlIDD 202 (440)
T PRK14088 139 VGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSE------KFLNDLVDSMKEG--------KLNEFREKYRK-KVDVLLIDD 202 (440)
T ss_pred CCCcHHHHHHHHHHHHHH-hCCCCeEEEEEHH------HHHHHHHHHHhcc--------cHHHHHHHHHh-cCCEEEEec
Confidence 699999999999998763 2333 47787653 4455555554321 11234444432 456899999
Q ss_pred CCCcc---cc-ccccccccC-CCCCcEEEEeeCCH
Q 048566 81 IWKHL---DL-ETVGIPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 81 v~~~~---~~-~~l~~~~~~-~~~gs~IlvTTR~~ 110 (760)
++... .+ +.+...+.. ...|..||+||...
T Consensus 203 i~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~ 237 (440)
T PRK14088 203 VQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 97531 11 122222111 12244688888544
No 118
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.27 E-value=0.073 Score=58.96 Aligned_cols=93 Identities=15% Similarity=0.190 Sum_probs=51.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|.|||.|++++++.......-..+++++.. ++..++...+.. .....+.+++. +-=+||+||+
T Consensus 323 sGsGKTHLL~AIa~~a~~~~~g~~V~Yitae------ef~~el~~al~~--------~~~~~f~~~y~--~~DLLlIDDI 386 (617)
T PRK14086 323 SGLGKTHLLHAIGHYARRLYPGTRVRYVSSE------EFTNEFINSIRD--------GKGDSFRRRYR--EMDILLVDDI 386 (617)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHh--------ccHHHHHHHhh--cCCEEEEehh
Confidence 5999999999999987632112346677543 344444443321 11223444444 3457889999
Q ss_pred CCcc---ccc-cccccccC-CCCCcEEEEeeCCH
Q 048566 82 WKHL---DLE-TVGIPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~---~~~-~l~~~~~~-~~~gs~IlvTTR~~ 110 (760)
.... .|+ .|...+.. ...|..|||||+..
T Consensus 387 q~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~ 420 (617)
T PRK14086 387 QFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRP 420 (617)
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 7652 222 22222211 22355688988875
No 119
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.25 E-value=0.043 Score=59.29 Aligned_cols=93 Identities=20% Similarity=0.322 Sum_probs=50.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||+||+++++....+..=..++++++. .+..++...+... ......+.+. +.-+||+||+
T Consensus 145 ~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~dlLiiDDi 208 (405)
T TIGR00362 145 VGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN--------KMEEFKEKYR--SVDLLLIDDI 208 (405)
T ss_pred CCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC--------CHHHHHHHHH--hCCEEEEehh
Confidence 6999999999999987643111346677543 3344444444321 1223444444 2348889999
Q ss_pred CCccc---c-ccccccccC-CCCCcEEEEeeCCH
Q 048566 82 WKHLD---L-ETVGIPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~~---~-~~l~~~~~~-~~~gs~IlvTTR~~ 110 (760)
+.... + +.+...+.. ...|..||+||...
T Consensus 209 ~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~ 242 (405)
T TIGR00362 209 QFLAGKERTQEEFFHTFNALHENGKQIVLTSDRP 242 (405)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCC
Confidence 75421 1 122211111 12345688888765
No 120
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.22 E-value=0.0018 Score=62.11 Aligned_cols=80 Identities=26% Similarity=0.402 Sum_probs=34.9
Q ss_pred CCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCC--CCC--ccccccccccceeecccCcccccc--hhhhcCCCCC
Q 048566 349 GMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSA--LGD--IAIIGKLKNLEVLSFLMSDIMQLP--EELGQLNKLR 422 (760)
Q Consensus 349 ~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~--l~~--~~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~ 422 (760)
.+..|..|++.++.++.+- .+..|++|++|.++.|. +.. +....++++|++|++++|+|..+- +.+..+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 4444555554444443221 12345556666665552 221 222333455555555555444211 1233344444
Q ss_pred EEecccc
Q 048566 423 LLDLTNC 429 (760)
Q Consensus 423 ~L~l~~~ 429 (760)
.|++.+|
T Consensus 120 ~Ldl~n~ 126 (260)
T KOG2739|consen 120 SLDLFNC 126 (260)
T ss_pred hhhcccC
Confidence 4444444
No 121
>PRK05642 DNA replication initiation factor; Validated
Probab=96.19 E-value=0.024 Score=55.95 Aligned_cols=82 Identities=21% Similarity=0.352 Sum_probs=48.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||.||+++++....+ -..++|++..+ +... ...+.+.+.+ -. ++|+||+
T Consensus 54 ~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~-~d-~LiiDDi 106 (234)
T PRK05642 54 DGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLEQ-YE-LVCLDDL 106 (234)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhhh-CC-EEEEech
Confidence 6999999999999876533 24577887542 1111 0234444442 33 6788999
Q ss_pred CCc---ccccc-ccccccC-CCCCcEEEEeeCCH
Q 048566 82 WKH---LDLET-VGIPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~---~~~~~-l~~~~~~-~~~gs~IlvTTR~~ 110 (760)
... ..|+. +..-+.. ..+|.+||+|++..
T Consensus 107 ~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 107 DVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 743 24433 3222211 23466799998876
No 122
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.16 E-value=0.013 Score=59.39 Aligned_cols=84 Identities=19% Similarity=0.236 Sum_probs=58.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhC-ccccchhh-------HHHHHHHHH--HHH-c
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLG-LELREEVE-------SSRASRIFE--RLR-N 70 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~~~~-------~~~~~~~~~--~l~-~ 70 (760)
.|.|||.+.+++++.... ..+|+++-+.++.+.+++.|+.+.+ .+.+.... .+.+..+.+ ... .
T Consensus 39 sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~ 113 (438)
T KOG2543|consen 39 SGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNR 113 (438)
T ss_pred CCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhcc
Confidence 589999999999988732 2579999999999999999999985 32222111 111222222 111 1
Q ss_pred CCcEEEEEECCCCccccccc
Q 048566 71 EKKILVVLDNIWKHLDLETV 90 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~~~~~l 90 (760)
++.++|||||++...+.+.+
T Consensus 114 d~~~~liLDnad~lrD~~a~ 133 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAI 133 (438)
T ss_pred CceEEEEEcCHHhhhccchH
Confidence 46899999999887665543
No 123
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.14 E-value=0.06 Score=60.33 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=25.5
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+++... ..+.|...+.......++|++|.+.
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~ 159 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence 467789999998653 2444555554433456677777655
No 124
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.11 E-value=0.045 Score=62.00 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCcEEEEEECCCCc--cccccccccccCCCCCcEEEE--eeCCH
Q 048566 60 RASRIFERLRNEKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLL--TARDR 110 (760)
Q Consensus 60 ~~~~~~~~l~~~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ilv--TTR~~ 110 (760)
....+.+.+.. +++.++-|+.|.. ..|+.++..+....+...|++ ||++.
T Consensus 281 ~Q~~Ll~~Le~-~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~ 334 (615)
T TIGR02903 281 LQNKLLKVLED-KRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP 334 (615)
T ss_pred HHHHHHHHHhh-CeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccc
Confidence 45667777764 8888887766644 357777666666666655666 66655
No 125
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.11 E-value=0.063 Score=57.00 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=26.2
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+++... ..+.+...+....++..+|++|.+.
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 455688889998763 3455555555445567777777776
No 126
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.10 E-value=0.074 Score=59.07 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=26.6
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+++... ..+.+...+.......++|++|.+.
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~ 159 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP 159 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCCh
Confidence 467799999998763 3555655555544556666666554
No 127
>PRK06921 hypothetical protein; Provisional
Probab=96.09 E-value=0.025 Score=56.76 Aligned_cols=114 Identities=13% Similarity=0.174 Sum_probs=60.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||.||.++++....+. -..++++++. +++..+...+ +......+.+. +-=|||+||+
T Consensus 126 ~G~GKThLa~aia~~l~~~~-g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~~~~--~~dlLiIDDl 186 (266)
T PRK06921 126 PGSGKTHLLTAAANELMRKK-GVPVLYFPFV------EGFGDLKDDF----------DLLEAKLNRMK--KVEVLFIDDL 186 (266)
T ss_pred CCCcHHHHHHHHHHHHhhhc-CceEEEEEHH------HHHHHHHHHH----------HHHHHHHHHhc--CCCEEEEecc
Confidence 69999999999999876331 2456677642 3333332221 11122334443 5669999999
Q ss_pred CC-------cccccc--ccccccC-CCCCcEEEEeeCCHHHHHHHHHHHhCCCcCChhhHHHHHHHHHHhCCcch
Q 048566 82 WK-------HLDLET--VGIPFGE-DHKGCKLLLTARDRKEAWRLFKMMVGDDVENRELKSTAIDVARACGGLPI 146 (760)
Q Consensus 82 ~~-------~~~~~~--l~~~~~~-~~~gs~IlvTTR~~~~a~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPL 146 (760)
.. ..+|.. +...+.. ...+..+||||....+.|.-+ -+.++.+|++.|.+..+
T Consensus 187 ~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~~~el~~~------------~~~l~sRi~~r~~~~~i 249 (266)
T PRK06921 187 FKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELTIDELLDI------------DEALGSRIVEMCKDYLV 249 (266)
T ss_pred ccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHhhh------------hhHHHHHHHHhccCeEE
Confidence 32 123332 2221111 122345888888653333221 13567778887765443
No 128
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.08 E-value=0.065 Score=55.84 Aligned_cols=86 Identities=16% Similarity=0.235 Sum_probs=46.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHH-cCCcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLR-NEKKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~r~LlVlDd 80 (760)
+|+||||+|+++++... . .+..++.+. .. ....++.+..+ ..... .+.+-+||+|+
T Consensus 52 ~G~GKT~la~~l~~~~~----~-~~~~i~~~~-~~-~~~i~~~l~~~----------------~~~~~~~~~~~vliiDe 108 (316)
T PHA02544 52 PGTGKTTVAKALCNEVG----A-EVLFVNGSD-CR-IDFVRNRLTRF----------------ASTVSLTGGGKVIIIDE 108 (316)
T ss_pred CCCCHHHHHHHHHHHhC----c-cceEeccCc-cc-HHHHHHHHHHH----------------HHhhcccCCCeEEEEEC
Confidence 69999999999998753 1 233455444 22 11111111111 11110 13456789999
Q ss_pred CCCc--c-ccccccccccCCCCCcEEEEeeCCH
Q 048566 81 IWKH--L-DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 81 v~~~--~-~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
++.. . ..+.+...+.....+.++|+||...
T Consensus 109 ~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 109 FDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred cccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 9865 1 2223333333445677899998765
No 129
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.00 E-value=0.0016 Score=72.53 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=30.6
Q ss_pred ccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcc
Q 048566 616 FPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKM 683 (760)
Q Consensus 616 ~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L 683 (760)
+++|+.|++..|..+.+.....+ ...+++|+.|.+.+|..+++-........+++|++|++++|..+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l-~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSAL-ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccCchhHHHH-HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 34555555555544333322111 11245555555555555444333334444555555555555544
No 130
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.98 E-value=0.14 Score=56.00 Aligned_cols=93 Identities=19% Similarity=0.280 Sum_probs=50.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||+||+++++....+..-..+++++.. .+..++...+... ....+.+.++ +.-+||+||+
T Consensus 157 ~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~dlLiiDDi 220 (450)
T PRK00149 157 VGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--SVDVLLIDDI 220 (450)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--cCCEEEEehh
Confidence 6999999999999997633112346677654 3333444443211 1233444554 3458899999
Q ss_pred CCccc---c-ccccccccC-CCCCcEEEEeeCCH
Q 048566 82 WKHLD---L-ETVGIPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~~---~-~~l~~~~~~-~~~gs~IlvTTR~~ 110 (760)
+.... + +.+...+.. ...|..|++||...
T Consensus 221 ~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~ 254 (450)
T PRK00149 221 QFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRP 254 (450)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 75321 1 222221111 12344588888765
No 131
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.11 Score=55.88 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=25.5
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
++.-++|+|+|+.. +.++.+...+.........|.+|.+.
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~ 161 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEF 161 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCCh
Confidence 56779999999876 35677665554433445555555544
No 132
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.95 E-value=0.031 Score=55.51 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=49.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCC-CeEEEEEecCCC-CHHHHHHHHHHHhCccc------cchh-hH------HHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLF-DMVVFSEVSQIP-DIKRIQQEIAEKLGLEL------REEV-ES------SRASRIFE 66 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~-~~------~~~~~~~~ 66 (760)
.|+||||||+.+++.... +| +.++++-+.++. .+.++.+++.+.=..+. ..++ .. ...-.+-+
T Consensus 78 ~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AE 155 (274)
T cd01133 78 AGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMAE 155 (274)
T ss_pred CCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 599999999999999874 35 456777777765 44566666654311110 0111 11 11223344
Q ss_pred HHH-c-CCcEEEEEECCCCc
Q 048566 67 RLR-N-EKKILVVLDNIWKH 84 (760)
Q Consensus 67 ~l~-~-~~r~LlVlDdv~~~ 84 (760)
+++ + |+.+|+|+||+...
T Consensus 156 yfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 156 YFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHhcCCeEEEEEeChhHH
Confidence 443 2 79999999998654
No 133
>PRK09087 hypothetical protein; Validated
Probab=95.89 E-value=0.038 Score=53.99 Aligned_cols=16 Identities=31% Similarity=0.322 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
.|+|||+|++.+++..
T Consensus 53 ~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 53 VGSGKTHLASIWREKS 68 (226)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 6999999999988764
No 134
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.85 E-value=0.15 Score=53.69 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=48.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCC--eEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFD--MVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLD 79 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlD 79 (760)
.|.|||.|++++.+..... .. .++.++. .......+..+.. +..+..++.. + -=++++|
T Consensus 122 ~GlGKTHLl~Aign~~~~~--~~~a~v~y~~s------e~f~~~~v~a~~~--------~~~~~Fk~~y-~--~dlllID 182 (408)
T COG0593 122 VGLGKTHLLQAIGNEALAN--GPNARVVYLTS------EDFTNDFVKALRD--------NEMEKFKEKY-S--LDLLLID 182 (408)
T ss_pred CCCCHHHHHHHHHHHHHhh--CCCceEEeccH------HHHHHHHHHHHHh--------hhHHHHHHhh-c--cCeeeec
Confidence 4899999999999998733 43 3555532 2333334433321 2233444444 2 2377788
Q ss_pred CCCCccc---cc-cccccccC-CCCCcEEEEeeCCH
Q 048566 80 NIWKHLD---LE-TVGIPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 80 dv~~~~~---~~-~l~~~~~~-~~~gs~IlvTTR~~ 110 (760)
|++-... |+ .+...|-. ...|-.||+|++..
T Consensus 183 Diq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~ 218 (408)
T COG0593 183 DIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRP 218 (408)
T ss_pred hHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCC
Confidence 8865421 22 22222211 12233788888766
No 135
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.83 E-value=0.022 Score=55.40 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEV 31 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~ 31 (760)
.|.||||+++.+..... +.|+++++++-
T Consensus 22 sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 22 SGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred CCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 69999999999998876 56988888854
No 136
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.77 E-value=0.31 Score=54.74 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=25.9
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
++.-++|+|+|+.. +.++.+...+.......++|++|.+.
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 45568999999876 34566666555544555666666554
No 137
>PRK08118 topology modulation protein; Reviewed
Probab=95.74 E-value=0.0044 Score=57.46 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=22.6
Q ss_pred CCCCcHHHHHHHHHHHHhhh-cCCCeEEE
Q 048566 1 MGGIGKTTLVKKVARQAMED-KLFDMVVF 28 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~-~~F~~~~w 28 (760)
.+|+||||+|+.+++..... -+||.++|
T Consensus 9 ~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 9 SGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 48999999999999986543 45777776
No 138
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.73 E-value=0.097 Score=54.77 Aligned_cols=89 Identities=9% Similarity=0.008 Sum_probs=50.1
Q ss_pred HHHHHHHHHHH----cCCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH---------------------H
Q 048566 59 SRASRIFERLR----NEKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR---------------------K 111 (760)
Q Consensus 59 ~~~~~~~~~l~----~~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~ 111 (760)
+.+..+.+++. .+++-++|+|+++... ..+.+...+........+|++|... +
T Consensus 124 d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~ 203 (351)
T PRK09112 124 DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDD 203 (351)
T ss_pred HHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHH
Confidence 33445555554 2567799999998763 3445544444333344445545444 5
Q ss_pred HHHHHHHHHhCCCcCChhhHHHHHHHHHHhCCcchHHHH
Q 048566 112 EAWRLFKMMVGDDVENRELKSTAIDVARACGGLPIALTT 150 (760)
Q Consensus 112 ~a~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~ 150 (760)
+..+.+...... .. --.+....+++.++|.|.....
T Consensus 204 ~~~~~L~~~~~~-~~--~~~~~~~~i~~~s~G~pr~Al~ 239 (351)
T PRK09112 204 ELKKALSHLGSS-QG--SDGEITEALLQRSKGSVRKALL 239 (351)
T ss_pred HHHHHHHHhhcc-cC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 666666553211 11 1134467788999999975443
No 139
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.70 E-value=0.072 Score=59.82 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=25.9
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
|++-++|+|+++... ..+.|...+.......++|++|.+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~ 159 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCc
Confidence 577799999998763 4566655555444455666666555
No 140
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.70 E-value=0.11 Score=57.92 Aligned_cols=40 Identities=8% Similarity=0.121 Sum_probs=25.8
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-+||+|+++.. +..+.|...+........+|++|.+.
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~ 159 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP 159 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCCh
Confidence 46779999999876 34556655554433455666666654
No 141
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.0023 Score=58.87 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=44.8
Q ss_pred ccccccccchhhhcccccccccccccccccccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCc
Q 048566 612 ACDAFPLLESLILHNLINMERVCIDRLKVESFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSK 682 (760)
Q Consensus 612 ~~~~~p~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 682 (760)
....+++++.|.+.+|.++.+++...+.. -+|+|+.|+|++|+++++- ....+..+++|+.|.+.+.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchh
Confidence 34456777777777787777776544432 5677777777777777764 234556666777776666553
No 142
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.69 E-value=0.094 Score=57.18 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+||||+|+.+++...
T Consensus 45 pGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 45 RGTGKTTVARILAKSLN 61 (472)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 69999999999998754
No 143
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.68 E-value=0.18 Score=53.47 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=26.3
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCHH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDRK 111 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~~ 111 (760)
+++-+||+|+++.. ...+.+...+........+|++|.+.+
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~ 158 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPH 158 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHH
Confidence 35568899999765 335555555554445667777776653
No 144
>PRK08181 transposase; Validated
Probab=95.62 E-value=0.016 Score=58.01 Aligned_cols=95 Identities=19% Similarity=0.210 Sum_probs=52.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||.||.++.+....+ ...++|+++ .++...+..... . .......+.+. +-=|||+||+
T Consensus 115 ~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~----~----~~~~~~l~~l~--~~dLLIIDDl 176 (269)
T PRK08181 115 PGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARR----E----LQLESAIAKLD--KFDLLILDDL 176 (269)
T ss_pred CCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHh----C----CcHHHHHHHHh--cCCEEEEecc
Confidence 6999999999999987633 335667654 345554433211 1 11223444553 5569999999
Q ss_pred CCc---cccc-cccccccC-CCCCcEEEEeeCCHHHHHH
Q 048566 82 WKH---LDLE-TVGIPFGE-DHKGCKLLLTARDRKEAWR 115 (760)
Q Consensus 82 ~~~---~~~~-~l~~~~~~-~~~gs~IlvTTR~~~~a~~ 115 (760)
... ..+. .+...+.. ...++ +||||...-..|.
T Consensus 177 g~~~~~~~~~~~Lf~lin~R~~~~s-~IiTSN~~~~~w~ 214 (269)
T PRK08181 177 AYVTKDQAETSVLFELISARYERRS-ILITANQPFGEWN 214 (269)
T ss_pred ccccCCHHHHHHHHHHHHHHHhCCC-EEEEcCCCHHHHH
Confidence 643 1111 12211111 12344 9999987633333
No 145
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.60 E-value=0.012 Score=55.06 Aligned_cols=90 Identities=20% Similarity=0.268 Sum_probs=48.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||.||.++.+....+ . ..+.|++++ +++..+-. ..... ....+.+.+. +-=||||||+
T Consensus 56 ~G~GKThLa~ai~~~~~~~-g-~~v~f~~~~------~L~~~l~~----~~~~~----~~~~~~~~l~--~~dlLilDDl 117 (178)
T PF01695_consen 56 PGTGKTHLAVAIANEAIRK-G-YSVLFITAS------DLLDELKQ----SRSDG----SYEELLKRLK--RVDLLILDDL 117 (178)
T ss_dssp TTSSHHHHHHHHHHHHHHT-T---EEEEEHH------HHHHHHHC----CHCCT----THCHHHHHHH--TSSCEEEETC
T ss_pred HhHHHHHHHHHHHHHhccC-C-cceeEeecC------ceeccccc----ccccc----chhhhcCccc--cccEeccccc
Confidence 6999999999999987643 2 346677643 44444432 21111 1223455565 4557889999
Q ss_pred CCcc--ccc--ccccccc-CCCCCcEEEEeeCCH
Q 048566 82 WKHL--DLE--TVGIPFG-EDHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~--~~~--~l~~~~~-~~~~gs~IlvTTR~~ 110 (760)
.... +|. .+..-+. ...++ .+||||.-.
T Consensus 118 G~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 118 GYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp TSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred ceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 7542 221 1111111 11233 488999876
No 146
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.59 E-value=0.26 Score=54.65 Aligned_cols=39 Identities=10% Similarity=0.092 Sum_probs=24.0
Q ss_pred CcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 72 KKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 72 ~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
++-++|+|+++.. ..++.+...+........+|++|...
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~ 159 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCCh
Confidence 4446999999865 34566655555444456666666544
No 147
>PRK10536 hypothetical protein; Provisional
Probab=95.59 E-value=0.048 Score=53.35 Aligned_cols=34 Identities=9% Similarity=0.146 Sum_probs=22.9
Q ss_pred EEEEEECCCCccccccccccccCCCCCcEEEEeeC
Q 048566 74 ILVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTAR 108 (760)
Q Consensus 74 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR 108 (760)
-+||+|.+.+... ..+...+-..+.+||||+|--
T Consensus 178 ~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 178 AVVILDEAQNVTA-AQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred CEEEEechhcCCH-HHHHHHHhhcCCCCEEEEeCC
Confidence 4999999987642 333333445678999998744
No 148
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.59 E-value=0.088 Score=57.48 Aligned_cols=17 Identities=41% Similarity=0.491 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|.|||++|+++++...
T Consensus 225 PGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 225 PGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCCcHHHHHHHHHHhhc
Confidence 79999999999999865
No 149
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.12 Score=55.60 Aligned_cols=40 Identities=5% Similarity=0.095 Sum_probs=27.4
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+.+-++|+|+++... .++.+...+....+.+.+|++|...
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~ 167 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTEL 167 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 466688999998653 5666766666555677777666544
No 150
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.57 E-value=0.14 Score=53.03 Aligned_cols=73 Identities=14% Similarity=0.192 Sum_probs=42.8
Q ss_pred CcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH---------------------HHHHHHHHHHhCCCcCCh
Q 048566 72 KKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR---------------------KEAWRLFKMMVGDDVENR 128 (760)
Q Consensus 72 ~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~~a~~Lf~~~a~~~~~~~ 128 (760)
++-++|+|+++.. +..+.+...+.....++.+|+||.+. +++.+.+....+. .
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-~--- 181 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE-S--- 181 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc-C---
Confidence 4445567999876 34566655555444567788888776 4555555443211 1
Q ss_pred hhHHHHHHHHHHhCCcchHHH
Q 048566 129 ELKSTAIDVARACGGLPIALT 149 (760)
Q Consensus 129 ~~~~~~~~i~~~c~glPLai~ 149 (760)
..+.+..++..++|.|....
T Consensus 182 -~~~~~~~~l~la~Gsp~~A~ 201 (328)
T PRK05707 182 -DERERIELLTLAGGSPLRAL 201 (328)
T ss_pred -ChHHHHHHHHHcCCCHHHHH
Confidence 12234566778888886443
No 151
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.57 E-value=0.17 Score=48.38 Aligned_cols=36 Identities=19% Similarity=0.084 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCcCChhhHHHHHHHHHHhCCcchH
Q 048566 111 KEAWRLFKMMVGDDVENRELKSTAIDVARACGGLPIA 147 (760)
Q Consensus 111 ~~a~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLa 147 (760)
+|-.++..+.|..-. -+--++.+.+|+..+.|-|--
T Consensus 182 ~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRi 217 (233)
T PF05496_consen 182 EELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRI 217 (233)
T ss_dssp HHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHH
T ss_pred HHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHH
Confidence 666777776662211 111246789999999999953
No 152
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.003 Score=58.12 Aligned_cols=69 Identities=19% Similarity=0.338 Sum_probs=50.3
Q ss_pred ccCCccEEEEecCCCCCcccchhhhhccCCCcEEEEecCCcchhhhccccccccccccccccccCeeecCCCccccc
Q 048566 642 SFNQLKNIEAYNCDKLSNIFWLSTTKCLPRLERIAVVNCSKMKEIFAIGEEVDNAIEKIEFAQLRSLSLGNLPEVTS 718 (760)
Q Consensus 642 ~~~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 718 (760)
.++.++.|.+.+|..+.+..-...-+-.++|+.|+|++|+.+++---. .+..+++|+.|.|.+.|....
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~--------~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA--------CLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH--------HHHHhhhhHHHHhcCchhhhc
Confidence 466788888889988887643222234578999999999988776422 556788899999888876654
No 153
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.53 E-value=0.13 Score=52.39 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 048566 2 GGIGKTTLVKKVARQAME 19 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~ 19 (760)
+|.||||+|+.+++....
T Consensus 67 pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 67 PGTGKTTVALRMAQILHR 84 (284)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 799999999999887653
No 154
>CHL00181 cbbX CbbX; Provisional
Probab=95.53 E-value=0.15 Score=51.93 Aligned_cols=17 Identities=41% Similarity=0.444 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+||||+|+.+++...
T Consensus 68 pGtGKT~lAr~la~~~~ 84 (287)
T CHL00181 68 PGTGKTTVALKMADILY 84 (287)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 79999999999998754
No 155
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.50 E-value=0.16 Score=53.04 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
.|+||||+|+.+++...
T Consensus 47 ~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 47 PGTGKTTAALALARELY 63 (319)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 69999999999999864
No 156
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.49 E-value=0.067 Score=51.85 Aligned_cols=38 Identities=26% Similarity=0.276 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQ 42 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 42 (760)
+|+|||++|.+++..... ....++|++... ++...+.+
T Consensus 21 ~GsGKT~l~~~~~~~~~~--~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 21 PGSGKTNICMILAVNAAR--QGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCCHHHHHHHHHHHHHh--CCCeEEEEECCC-CCHHHHHH
Confidence 799999999999888752 356799999876 55544433
No 157
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.46 E-value=0.016 Score=60.88 Aligned_cols=86 Identities=9% Similarity=-0.007 Sum_probs=50.2
Q ss_pred HHHHHHHHHH----cCCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH---------------------HH
Q 048566 60 RASRIFERLR----NEKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR---------------------KE 112 (760)
Q Consensus 60 ~~~~~~~~l~----~~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~~ 112 (760)
.+..+.+.+. .+++-++|+|+++... ..+.+...+.....+..+|++|.+. ++
T Consensus 125 qiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~ 204 (365)
T PRK07471 125 EVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPED 204 (365)
T ss_pred HHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHH
Confidence 3444555443 2467799999998663 4455555554444456677777765 55
Q ss_pred HHHHHHHHhCCCcCChhhHHHHHHHHHHhCCcchHHHH
Q 048566 113 AWRLFKMMVGDDVENRELKSTAIDVARACGGLPIALTT 150 (760)
Q Consensus 113 a~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPLai~~ 150 (760)
..+++....+.. . .+....++..++|.|.....
T Consensus 205 i~~~L~~~~~~~--~---~~~~~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 205 VIDALAAAGPDL--P---DDPRAALAALAEGSVGRALR 237 (365)
T ss_pred HHHHHHHhcccC--C---HHHHHHHHHHcCCCHHHHHH
Confidence 666665443211 1 11125678888998875433
No 158
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.46 E-value=0.39 Score=56.00 Aligned_cols=40 Identities=8% Similarity=0.127 Sum_probs=26.5
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
++.-++|+|+++.. +..+.|...+........+|++|.+.
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~ 160 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEP 160 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 45567889999876 34566666666555566666666544
No 159
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.43 E-value=0.096 Score=52.27 Aligned_cols=80 Identities=29% Similarity=0.332 Sum_probs=48.5
Q ss_pred CCCcHHHHHHHHHHHHhhh---cCC-CeEEEEEecCCCCHHHHHHHHHHHhCccccc-------------hhhHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMED---KLF-DMVVFSEVSQIPDIKRIQQEIAEKLGLELRE-------------EVESSRASRI 64 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~---~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------------~~~~~~~~~~ 64 (760)
+|+|||+||.+++-..... +.. ..++|+|-...|+...+. +|+++.+.+..+ ++..+.+..+
T Consensus 47 ~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~l 125 (256)
T PF08423_consen 47 SGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEELLELLEQL 125 (256)
T ss_dssp TTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHHHHHHHHHHH
Confidence 6999999999888664322 112 359999988888877665 467665433211 1112233344
Q ss_pred HHHHHcCCcEEEEEECCC
Q 048566 65 FERLRNEKKILVVLDNIW 82 (760)
Q Consensus 65 ~~~l~~~~r~LlVlDdv~ 82 (760)
...+.+.+=-|||+|.+-
T Consensus 126 ~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 126 PKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHSCEEEEEEETSS
T ss_pred HhhccccceEEEEecchH
Confidence 444444456699999884
No 160
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.41 E-value=0.077 Score=52.56 Aligned_cols=80 Identities=21% Similarity=0.232 Sum_probs=46.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcC----CCeEEEEEecCCCCHHHHHHHHHHHhCcccc-------------chhhHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKL----FDMVVFSEVSQIPDIKRIQQEIAEKLGLELR-------------EEVESSRASRI 64 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------~~~~~~~~~~~ 64 (760)
+|+||||+|.+++........ ...++|++....++...+ .++++..+.... .++..+....+
T Consensus 28 ~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~l~~l 106 (235)
T cd01123 28 FGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNSDHQLQLLEEL 106 (235)
T ss_pred CCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCHHHHHHHHHHH
Confidence 699999999999865432221 257999998877665443 334444332211 01112233444
Q ss_pred HHHHHcC-CcEEEEEECCC
Q 048566 65 FERLRNE-KKILVVLDNIW 82 (760)
Q Consensus 65 ~~~l~~~-~r~LlVlDdv~ 82 (760)
.+.+.+. +--+||+|.+.
T Consensus 107 ~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 107 EAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHhhcCCeeEEEEeCcH
Confidence 4455444 66788888874
No 161
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.39 E-value=0.04 Score=52.19 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=17.2
Q ss_pred CCCCcHHHHHHHHHHHHhhh
Q 048566 1 MGGIGKTTLVKKVARQAMED 20 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~ 20 (760)
.+|+|||+|.++++......
T Consensus 32 ~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 32 ESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 37999999999999998755
No 162
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.38 E-value=0.044 Score=62.81 Aligned_cols=17 Identities=41% Similarity=0.657 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+||||+|+.+++...
T Consensus 61 pGtGKTTLA~aIA~~~~ 77 (725)
T PRK13341 61 PGVGKTTLARIIANHTR 77 (725)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 79999999999998764
No 163
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.30 E-value=0.61 Score=51.41 Aligned_cols=40 Identities=13% Similarity=0.201 Sum_probs=26.8
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+++... ..+.+...+.......++|++|.+.
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~ 157 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDP 157 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECCh
Confidence 466688999997663 3555655555545567777777765
No 164
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.25 E-value=0.42 Score=54.07 Aligned_cols=40 Identities=10% Similarity=0.151 Sum_probs=25.8
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++=++|+|+++... .++.|...+......+.+|++|...
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~ 161 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEK 161 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCc
Confidence 356688999998763 4566666665555566666655443
No 165
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.21 E-value=0.08 Score=53.29 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+||||+|+.+++...
T Consensus 51 pGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 51 PGTGKTTVARILGKLFK 67 (261)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 79999999999998753
No 166
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.19 E-value=0.14 Score=54.79 Aligned_cols=63 Identities=27% Similarity=0.331 Sum_probs=35.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||++|+++++.... . |+.++. .. +.....+. .......+++......+.+|++|++
T Consensus 174 pGtGKT~lAkaia~~~~~--~-----~i~v~~----~~----l~~~~~g~-----~~~~i~~~f~~a~~~~p~IlfiDEi 233 (389)
T PRK03992 174 PGTGKTLLAKAVAHETNA--T-----FIRVVG----SE----LVQKFIGE-----GARLVRELFELAREKAPSIIFIDEI 233 (389)
T ss_pred CCCChHHHHHHHHHHhCC--C-----EEEeeh----HH----HhHhhccc-----hHHHHHHHHHHHHhcCCeEEEEech
Confidence 799999999999987642 1 233321 11 11111110 1122334444444346789999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 234 D~l 236 (389)
T PRK03992 234 DAI 236 (389)
T ss_pred hhh
Confidence 864
No 167
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.18 E-value=0.011 Score=56.79 Aligned_cols=83 Identities=23% Similarity=0.311 Sum_probs=59.7
Q ss_pred hcCCCCceEEEecCCCC--C-CChhhhhhhccCCeeEecCCCCCC---ccccccccccceeecccCcccccch----hhh
Q 048566 347 FIGMKKLRVLDFTRMQF--S-SFPSSIDLLVNLHTLCLDQSALGD---IAIIGKLKNLEVLSFLMSDIMQLPE----ELG 416 (760)
Q Consensus 347 ~~~l~~Lr~L~l~~~~~--~-~lp~~i~~l~~L~~L~l~~~~l~~---~~~~~~l~~L~~L~l~~~~i~~lp~----~~~ 416 (760)
|..+++|+.|.++.|.. . .++.....+++|++|++++|++.. ++.+..+.+|..|++..|..+.+-. .+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 45677888999988833 3 555566677999999999999765 4556677888899999987665532 244
Q ss_pred cCCCCCEEecccc
Q 048566 417 QLNKLRLLDLTNC 429 (760)
Q Consensus 417 ~l~~L~~L~l~~~ 429 (760)
-+++|.+|+-...
T Consensus 141 ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 141 LLPSLKYLDGCDV 153 (260)
T ss_pred Hhhhhcccccccc
Confidence 5677777766554
No 168
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.06 E-value=0.76 Score=48.40 Aligned_cols=83 Identities=18% Similarity=0.262 Sum_probs=52.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcc-ccchhhHHHHHHHHHHHHcCC-cEEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLE-LREEVESSRASRIFERLRNEK-KILVVLD 79 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~~~~l~~~~-r~LlVlD 79 (760)
+|.|||.+...++.+......=-.++.++...-.....+++.|...+-.. .......+-...+-++..+.+ -+++|+|
T Consensus 184 PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlD 263 (529)
T KOG2227|consen 184 PGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLD 263 (529)
T ss_pred CCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEec
Confidence 69999999999999875321112457777766566677777777666111 111111334455555555433 6999999
Q ss_pred CCCCc
Q 048566 80 NIWKH 84 (760)
Q Consensus 80 dv~~~ 84 (760)
.+|..
T Consensus 264 EmD~L 268 (529)
T KOG2227|consen 264 EMDHL 268 (529)
T ss_pred hhhHH
Confidence 98764
No 169
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.02 E-value=0.54 Score=53.01 Aligned_cols=40 Identities=5% Similarity=0.095 Sum_probs=25.6
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+.+-++|+|+++... ..+.|...+......+.+|++|.+.
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 456688999998763 3556666665554556666666544
No 170
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.27 Score=55.62 Aligned_cols=103 Identities=15% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcccc-----chhhHHHHHHHHHHHH----cCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR-----EEVESSRASRIFERLR----NEK 72 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l~----~~~ 72 (760)
.|+||||+|+.+++.......+. -....+.....+.|......+.- .....+.+..+.+.+. .++
T Consensus 47 ~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~ 120 (585)
T PRK14950 47 RGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALAR 120 (585)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCC
Confidence 69999999999998764221110 00111122233333322211110 0011122233333322 146
Q ss_pred cEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 73 KILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 73 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+-++|+|+++.. +..+.|...+........+|++|.+.
T Consensus 121 ~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~ 160 (585)
T PRK14950 121 YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160 (585)
T ss_pred eEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 678999999765 34566655555444566677777554
No 171
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.96 E-value=0.25 Score=55.55 Aligned_cols=40 Identities=8% Similarity=0.156 Sum_probs=26.1
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+++... ..+.|...+......+++|++|...
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 356689999997663 4566666665555567776666443
No 172
>PRK06526 transposase; Provisional
Probab=94.94 E-value=0.026 Score=56.08 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=48.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||+||.++.+....+ .+ .+.|++ ..++...+..... . .........+. +.-+||+||+
T Consensus 107 ~GtGKThLa~al~~~a~~~-g~-~v~f~t------~~~l~~~l~~~~~----~----~~~~~~l~~l~--~~dlLIIDD~ 168 (254)
T PRK06526 107 PGTGKTHLAIGLGIRACQA-GH-RVLFAT------AAQWVARLAAAHH----A----GRLQAELVKLG--RYPLLIVDEV 168 (254)
T ss_pred CCCchHHHHHHHHHHHHHC-CC-chhhhh------HHHHHHHHHHHHh----c----CcHHHHHHHhc--cCCEEEEccc
Confidence 7999999999999887633 33 344443 3344444432211 0 11122233332 5568999999
Q ss_pred CCcc---cccc-cccccc-CCCCCcEEEEeeCCHHH
Q 048566 82 WKHL---DLET-VGIPFG-EDHKGCKLLLTARDRKE 112 (760)
Q Consensus 82 ~~~~---~~~~-l~~~~~-~~~~gs~IlvTTR~~~~ 112 (760)
.... .+.. +...+. ...+++ +|+||...-.
T Consensus 169 g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~~~ 203 (254)
T PRK06526 169 GYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKPFG 203 (254)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCCHH
Confidence 7431 1111 211111 122355 8999987633
No 173
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.92 E-value=0.11 Score=51.23 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
.|+|||+||+++++....+ . ..+.+++...
T Consensus 51 ~G~GKT~La~ai~~~~~~~-~-~~~~~i~~~~ 80 (227)
T PRK08903 51 AGSGRSHLLQALVADASYG-G-RNARYLDAAS 80 (227)
T ss_pred CCCCHHHHHHHHHHHHHhC-C-CcEEEEehHH
Confidence 6999999999999986422 2 2455666443
No 174
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.88 E-value=1 Score=50.39 Aligned_cols=40 Identities=5% Similarity=0.076 Sum_probs=25.9
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|++... ...+.|...+........+|++|.+.
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 46668899999765 34566666665555566666666544
No 175
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.87 E-value=0.011 Score=33.54 Aligned_cols=21 Identities=24% Similarity=0.486 Sum_probs=12.0
Q ss_pred ccceeecccCcccccchhhhc
Q 048566 397 NLEVLSFLMSDIMQLPEELGQ 417 (760)
Q Consensus 397 ~L~~L~l~~~~i~~lp~~~~~ 417 (760)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655443
No 176
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.82 E-value=0.11 Score=53.25 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=54.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||.||.++++.... ..+ .+.+++++ .++.++....... ......+.+. +-=||||||+
T Consensus 165 ~G~GKThLa~Aia~~l~~-~g~-~v~~~~~~------~l~~~lk~~~~~~--------~~~~~l~~l~--~~dlLiIDDi 226 (306)
T PRK08939 165 FGVGKSYLLAAIANELAK-KGV-SSTLLHFP------EFIRELKNSISDG--------SVKEKIDAVK--EAPVLMLDDI 226 (306)
T ss_pred CCCCHHHHHHHHHHHHHH-cCC-CEEEEEHH------HHHHHHHHHHhcC--------cHHHHHHHhc--CCCEEEEecC
Confidence 599999999999999873 333 45666654 4555555444211 1223444453 6679999999
Q ss_pred CCc--ccccc--ccccc-cCC-CCCcEEEEeeCCH
Q 048566 82 WKH--LDLET--VGIPF-GED-HKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~--~~~~~--l~~~~-~~~-~~gs~IlvTTR~~ 110 (760)
... ..|.. +...+ ... ..+-.+|+||--.
T Consensus 227 G~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 227 GAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred CCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 643 34542 33332 211 2344589999876
No 177
>PRK04132 replication factor C small subunit; Provisional
Probab=94.81 E-value=0.44 Score=55.31 Aligned_cols=94 Identities=11% Similarity=0.054 Sum_probs=56.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
-|+||||+|.+++++.-.++.-..++-++++...++.. .++++..+..... +...+.-++|+|++
T Consensus 575 h~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~--------------~~~~~~KVvIIDEa 639 (846)
T PRK04132 575 TVLHNTTAALALARELFGENWRHNFLELNASDERGINV-IREKVKEFARTKP--------------IGGASFKIIFLDEA 639 (846)
T ss_pred CcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC--------------cCCCCCEEEEEECc
Confidence 37899999999999864221113477888887555543 3333332211000 01125679999999
Q ss_pred CCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 82 WKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+... ..+.|...+.......++|.+|.+.
T Consensus 640 D~Lt~~AQnALLk~lEep~~~~~FILi~N~~ 670 (846)
T PRK04132 640 DALTQDAQQALRRTMEMFSSNVRFILSCNYS 670 (846)
T ss_pred ccCCHHHHHHHHHHhhCCCCCeEEEEEeCCh
Confidence 9874 4555655555444566777777766
No 178
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.68 E-value=0.53 Score=53.04 Aligned_cols=40 Identities=8% Similarity=0.189 Sum_probs=25.0
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+|+... ..+.|...+........+|++|.+.
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~ 159 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEP 159 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCCh
Confidence 355688899998653 3555655555444456666666554
No 179
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.68 E-value=0.82 Score=48.70 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
.|+||||+|+.+++...
T Consensus 48 ~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 48 RGVGKTTCARILARKIN 64 (367)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 69999999999988754
No 180
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.67 E-value=0.4 Score=54.26 Aligned_cols=104 Identities=14% Similarity=0.123 Sum_probs=51.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccc-----cchhhHHHHHHHHHHHH----cCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLEL-----REEVESSRASRIFERLR----NEK 72 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~~~~l~----~~~ 72 (760)
.|+||||+|+.+++..-....... . ......-...+.+......+. ......+.+..+..... .++
T Consensus 47 ~G~GKttlA~~lAk~L~c~~~~~~-~----~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~ 121 (620)
T PRK14948 47 RGTGKTSSARILAKSLNCLNSDKP-T----PEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQAR 121 (620)
T ss_pred CCCChHHHHHHHHHHhcCCCcCCC-C----CCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCC
Confidence 599999999999998653211110 0 011111223333332221111 00111122333333332 145
Q ss_pred cEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 73 KILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 73 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+-++|+|+++.. +..+.|...+........+|++|.+.
T Consensus 122 ~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 122 WKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred ceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 668899999865 34566665555444455556566554
No 181
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.62 E-value=0.2 Score=53.46 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=34.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||++|+++++.... .| +.+..+ . +.....+ + ....+..++.......+.+|++|++
T Consensus 188 pGTGKT~LAkalA~~l~~--~f---i~i~~s------~----l~~k~~g----e-~~~~lr~lf~~A~~~~P~ILfIDEI 247 (398)
T PTZ00454 188 PGTGKTMLAKAVAHHTTA--TF---IRVVGS------E----FVQKYLG----E-GPRMVRDVFRLARENAPSIIFIDEV 247 (398)
T ss_pred CCCCHHHHHHHHHHhcCC--CE---EEEehH------H----HHHHhcc----h-hHHHHHHHHHHHHhcCCeEEEEECH
Confidence 799999999999987542 22 222111 1 1111111 0 1122344444444457899999998
Q ss_pred CC
Q 048566 82 WK 83 (760)
Q Consensus 82 ~~ 83 (760)
+.
T Consensus 248 D~ 249 (398)
T PTZ00454 248 DS 249 (398)
T ss_pred hh
Confidence 74
No 182
>PTZ00202 tuzin; Provisional
Probab=94.60 E-value=0.13 Score=53.99 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=33.6
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccc
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLEL 52 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 52 (760)
++|+|||||++.+..... ...++++.. +..++++.++++||.+.
T Consensus 294 ~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~eElLr~LL~ALGV~p 337 (550)
T PTZ00202 294 FRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTEDTLRSVVKALGVPN 337 (550)
T ss_pred CCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHHHHHHHHHHHcCCCC
Confidence 479999999999996543 224555554 67899999999999743
No 183
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.60 E-value=0.075 Score=52.34 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=40.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||+||.++++....+ -..++++++ .++...+-..... .. .....+.+.+. +.=+||+||+
T Consensus 108 ~GtGKThLa~aia~~l~~~--g~~v~~it~------~~l~~~l~~~~~~--~~----~~~~~~l~~l~--~~dlLvIDDi 171 (244)
T PRK07952 108 PGTGKNHLAAAICNELLLR--GKSVLIITV------ADIMSAMKDTFSN--SE----TSEEQLLNDLS--NVDLLVIDEI 171 (244)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEEH------HHHHHHHHHHHhh--cc----ccHHHHHHHhc--cCCEEEEeCC
Confidence 6999999999999987643 345677754 3444444333311 01 11234555554 4558888999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
...
T Consensus 172 g~~ 174 (244)
T PRK07952 172 GVQ 174 (244)
T ss_pred CCC
Confidence 654
No 184
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.53 E-value=0.11 Score=53.27 Aligned_cols=75 Identities=20% Similarity=0.221 Sum_probs=47.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcccc------chhhHHHHHHHHHHHHcCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR------EEVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~~l~~~~r~L 75 (760)
+|+||||||.+++...... -..++||+..+.++.. .+++++.+.+ ....++....+....+++.--+
T Consensus 64 ~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~l 136 (321)
T TIGR02012 64 ESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDI 136 (321)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcE
Confidence 6999999999988876532 3568899887765542 3555554322 1222333444444344456779
Q ss_pred EEEECCCC
Q 048566 76 VVLDNIWK 83 (760)
Q Consensus 76 lVlDdv~~ 83 (760)
||+|-|..
T Consensus 137 IVIDSv~a 144 (321)
T TIGR02012 137 IVVDSVAA 144 (321)
T ss_pred EEEcchhh
Confidence 99999864
No 185
>PRK12377 putative replication protein; Provisional
Probab=94.49 E-value=0.12 Score=50.96 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=40.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||+||.++++....+ ...++++++. ++...+-...... .....+.+.+. +--|||+||+
T Consensus 110 ~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~~-------~~~~~~l~~l~--~~dLLiIDDl 172 (248)
T PRK12377 110 PGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDNG-------QSGEKFLQELC--KVDLLVLDEI 172 (248)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhcc-------chHHHHHHHhc--CCCEEEEcCC
Confidence 5999999999999998733 3446777654 4444443333110 01123455553 6779999999
Q ss_pred CC
Q 048566 82 WK 83 (760)
Q Consensus 82 ~~ 83 (760)
..
T Consensus 173 g~ 174 (248)
T PRK12377 173 GI 174 (248)
T ss_pred CC
Confidence 43
No 186
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.45 E-value=0.26 Score=44.77 Aligned_cols=107 Identities=22% Similarity=0.229 Sum_probs=56.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC---CCCHHHHHHHHH----HHhCccc----cc-hhh----HHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ---IPDIKRIQQEIA----EKLGLEL----RE-EVE----SSRASRIF 65 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~i~----~~l~~~~----~~-~~~----~~~~~~~~ 65 (760)
.|.||||+|...+-+.... .+ .+.++-.-+ .......++.+- .+.+... .. ... .+.....+
T Consensus 11 ~G~Gkt~~a~g~~~ra~~~-g~-~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~~~~a~ 88 (159)
T cd00561 11 NGKGKTTAALGLALRALGH-GY-RVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEGWAFAK 88 (159)
T ss_pred CCCCHHHHHHHHHHHHHHC-CC-eEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHHHHHHH
Confidence 4899999999999887632 23 444544322 234444444330 0001100 00 011 11223344
Q ss_pred HHHHcCCcEEEEEECCCCc-----cccccccccccCCCCCcEEEEeeCCH
Q 048566 66 ERLRNEKKILVVLDNIWKH-----LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 66 ~~l~~~~r~LlVlDdv~~~-----~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+.+..++-=|||||.+-.. -+.+.+...+.....+.-||+|.|+.
T Consensus 89 ~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 89 EAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 4444455669999998554 22344444444455566799999964
No 187
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.43 E-value=0.039 Score=56.97 Aligned_cols=93 Identities=13% Similarity=0.194 Sum_probs=49.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||.||.++++....+ -..|+++++. .++..+...-. .... + .....+.+. .-=|||+||+
T Consensus 192 ~GtGKThLa~aIa~~l~~~--g~~V~y~t~~------~l~~~l~~~~~-~~~~----~-~~~~~~~l~--~~DLLIIDDl 255 (329)
T PRK06835 192 TGTGKTFLSNCIAKELLDR--GKSVIYRTAD------ELIEILREIRF-NNDK----E-LEEVYDLLI--NCDLLIIDDL 255 (329)
T ss_pred CCCcHHHHHHHHHHHHHHC--CCeEEEEEHH------HHHHHHHHHHh-ccch----h-HHHHHHHhc--cCCEEEEecc
Confidence 5999999999999998643 2356777654 33333322111 1100 1 111244443 3458999999
Q ss_pred CCc--ccc--ccccccccC-CCCCcEEEEeeCCH
Q 048566 82 WKH--LDL--ETVGIPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~--~~~--~~l~~~~~~-~~~gs~IlvTTR~~ 110 (760)
... ..| +.+..-+.. ...+-.+||||...
T Consensus 256 G~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 544 222 222211111 12244588888864
No 188
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.43 E-value=0.17 Score=54.82 Aligned_cols=91 Identities=13% Similarity=0.174 Sum_probs=50.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||+||+++++..... ...+++++. ..+...+...+... ..+..++.+. +.-++++||+
T Consensus 150 ~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~--------~~~~f~~~~~--~~dvLiIDDi 211 (445)
T PRK12422 150 EGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG--------EMQRFRQFYR--NVDALFIEDI 211 (445)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc--------hHHHHHHHcc--cCCEEEEcch
Confidence 6999999999999987632 234566653 23444444444321 1223333333 4558888998
Q ss_pred CCccc--c--ccccccccC-CCCCcEEEEeeCCH
Q 048566 82 WKHLD--L--ETVGIPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~~--~--~~l~~~~~~-~~~gs~IlvTTR~~ 110 (760)
..... + +.+...+.. ...|..||+||...
T Consensus 212 q~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~ 245 (445)
T PRK12422 212 EVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCA 245 (445)
T ss_pred hhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCC
Confidence 76422 1 122222110 11345688888654
No 189
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.39 E-value=0.26 Score=49.59 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRI 40 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 40 (760)
+|+|||++|+++++... ...+.++.....+..++
T Consensus 30 ~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 30 AGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDL 63 (262)
T ss_pred CCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHH
Confidence 79999999999987431 23456666655444444
No 190
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.38 E-value=0.11 Score=53.21 Aligned_cols=75 Identities=24% Similarity=0.232 Sum_probs=47.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcccc------chhhHHHHHHHHHHHHcCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR------EEVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~~l~~~~r~L 75 (760)
+|+||||||.+++...... -..++||+..+.++.. .+++++.+.+ ..+.++....+....+++.--+
T Consensus 64 ~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~l 136 (325)
T cd00983 64 ESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDL 136 (325)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCE
Confidence 6999999999988776532 4568899987766642 4555554322 1122333333433344456779
Q ss_pred EEEECCCC
Q 048566 76 VVLDNIWK 83 (760)
Q Consensus 76 lVlDdv~~ 83 (760)
||+|-|..
T Consensus 137 IVIDSvaa 144 (325)
T cd00983 137 IVVDSVAA 144 (325)
T ss_pred EEEcchHh
Confidence 99999853
No 191
>PRK09354 recA recombinase A; Provisional
Probab=94.38 E-value=0.13 Score=53.14 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=48.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccc------hhhHHHHHHHHHHHHcCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELRE------EVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~l~~~~r~L 75 (760)
+|.||||||.+++...... -..++||+..+.++. ..+++++.+.+. ...++....+....+++.--+
T Consensus 69 ~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~l 141 (349)
T PRK09354 69 ESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDL 141 (349)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCE
Confidence 6999999999988876533 466899998877664 245566554321 122333333333344456779
Q ss_pred EEEECCCC
Q 048566 76 VVLDNIWK 83 (760)
Q Consensus 76 lVlDdv~~ 83 (760)
||+|-|..
T Consensus 142 IVIDSvaa 149 (349)
T PRK09354 142 IVVDSVAA 149 (349)
T ss_pred EEEeChhh
Confidence 99999864
No 192
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.33 E-value=0.13 Score=51.24 Aligned_cols=66 Identities=18% Similarity=0.326 Sum_probs=42.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||.||.++.++.. +..+ .|.++++ .++.+++....... ....++.+.+. +-=|||+||+
T Consensus 114 ~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~------~el~~~Lk~~~~~~-------~~~~~l~~~l~--~~dlLIiDDl 176 (254)
T COG1484 114 PGVGKTHLAIAIGNELL-KAGI-SVLFITA------PDLLSKLKAAFDEG-------RLEEKLLRELK--KVDLLIIDDI 176 (254)
T ss_pred CCCcHHHHHHHHHHHHH-HcCC-eEEEEEH------HHHHHHHHHHHhcC-------chHHHHHHHhh--cCCEEEEecc
Confidence 69999999999999988 4333 4556653 45666665554321 11223444343 5558999998
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
-..
T Consensus 177 G~~ 179 (254)
T COG1484 177 GYE 179 (254)
T ss_pred cCc
Confidence 653
No 193
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.30 E-value=0.64 Score=51.04 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=24.2
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+++... ..+.+...+....+...+|++|.+.
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~ 159 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEY 159 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCH
Confidence 467799999998652 3455555554444455566555443
No 194
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=94.26 E-value=0.21 Score=49.09 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKR 39 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 39 (760)
+|.|||++|.+++...... -..++|++.. .++...
T Consensus 32 ~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 32 PGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHH
Confidence 7999999999999887532 4678999987 444433
No 195
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.17 E-value=0.24 Score=51.38 Aligned_cols=49 Identities=22% Similarity=0.199 Sum_probs=34.2
Q ss_pred CCCcHHHHHHHHHHHHhh---hcC-CCeEEEEEecCCCCHHHHHHHHHHHhCcc
Q 048566 2 GGIGKTTLVKKVARQAME---DKL-FDMVVFSEVSQIPDIKRIQQEIAEKLGLE 51 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~---~~~-F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 51 (760)
+|+||||||.+++-.... .+. -..++||+....|+...+.+ +++.++.+
T Consensus 135 ~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 135 FRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 699999999988754332 112 24689999998888776554 56666554
No 196
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.12 E-value=0.23 Score=51.07 Aligned_cols=80 Identities=21% Similarity=0.219 Sum_probs=47.8
Q ss_pred CCCcHHHHHHHHHHHHhhh---cC-CCeEEEEEecCCCCHHHHHHHHHHHhCccccc-------------hhhHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMED---KL-FDMVVFSEVSQIPDIKRIQQEIAEKLGLELRE-------------EVESSRASRI 64 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~---~~-F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------------~~~~~~~~~~ 64 (760)
+|+||||+|.+++-..... +. =..++||+....|+...+. ++++.++.+... +...+.+..+
T Consensus 105 ~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~l 183 (313)
T TIGR02238 105 FRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSEHQMELLDYL 183 (313)
T ss_pred CCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHHHHHHHHHHH
Confidence 6999999998877543211 11 2468999998888777665 456666554321 1111223334
Q ss_pred HHHHHcCCcEEEEEECCC
Q 048566 65 FERLRNEKKILVVLDNIW 82 (760)
Q Consensus 65 ~~~l~~~~r~LlVlDdv~ 82 (760)
...+.+++--|||+|.+.
T Consensus 184 ~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 184 AAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHhhccCCCEEEEEcch
Confidence 444443345578888874
No 197
>PRK09183 transposase/IS protein; Provisional
Probab=94.11 E-value=0.062 Score=53.78 Aligned_cols=93 Identities=19% Similarity=0.165 Sum_probs=47.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||+||.++++....+ . ..+.++++ .++...+...... .....+.+... .+.-++|+||+
T Consensus 111 ~GtGKThLa~al~~~a~~~-G-~~v~~~~~------~~l~~~l~~a~~~--------~~~~~~~~~~~-~~~dlLiiDdl 173 (259)
T PRK09183 111 SGVGKTHLAIALGYEAVRA-G-IKVRFTTA------ADLLLQLSTAQRQ--------GRYKTTLQRGV-MAPRLLIIDEI 173 (259)
T ss_pred CCCCHHHHHHHHHHHHHHc-C-CeEEEEeH------HHHHHHHHHHHHC--------CcHHHHHHHHh-cCCCEEEEccc
Confidence 6999999999998875532 2 23445542 2333333221110 01222332222 25669999999
Q ss_pred CCc--cccc--ccccccc-CCCCCcEEEEeeCCHHH
Q 048566 82 WKH--LDLE--TVGIPFG-EDHKGCKLLLTARDRKE 112 (760)
Q Consensus 82 ~~~--~~~~--~l~~~~~-~~~~gs~IlvTTR~~~~ 112 (760)
... ..++ .+...+. ....++ +||||...-+
T Consensus 174 g~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~~~ 208 (259)
T PRK09183 174 GYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLPFG 208 (259)
T ss_pred ccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCCHH
Confidence 743 1121 2222111 123455 8888887633
No 198
>PRK07261 topology modulation protein; Provisional
Probab=94.09 E-value=0.19 Score=46.80 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=19.7
Q ss_pred CCCCcHHHHHHHHHHHHhhh-cCCCeEEE
Q 048566 1 MGGIGKTTLVKKVARQAMED-KLFDMVVF 28 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~-~~F~~~~w 28 (760)
++|+||||||+++....... -+.|.+.|
T Consensus 8 ~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 8 YSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999998775321 23455555
No 199
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.97 E-value=0.022 Score=32.40 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=11.7
Q ss_pred CceEEEecCCCCCCChhhhh
Q 048566 352 KLRVLDFTRMQFSSFPSSID 371 (760)
Q Consensus 352 ~Lr~L~l~~~~~~~lp~~i~ 371 (760)
+|++|++++|.++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666655544
No 200
>PHA00729 NTP-binding motif containing protein
Probab=93.92 E-value=0.14 Score=49.25 Aligned_cols=16 Identities=56% Similarity=0.653 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
+|+||||||.++.+..
T Consensus 26 pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 26 QGSGKTTYALKVARDV 41 (226)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 7999999999999875
No 201
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.90 E-value=0.3 Score=52.54 Aligned_cols=17 Identities=47% Similarity=0.575 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|.|||++|+++++...
T Consensus 226 PGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 226 PGTGKTLLAKAVANETS 242 (438)
T ss_pred CCCCHHHHHHHHHHhhC
Confidence 69999999999999764
No 202
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.82 E-value=1.5 Score=48.00 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=35.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||.+|+++++..... | +-++.+. +... ...+ .+.....+.+......+++|++|++
T Consensus 268 pGTGKTllAkaiA~e~~~~--~---~~l~~~~----------l~~~----~vGe-se~~l~~~f~~A~~~~P~IL~IDEI 327 (489)
T CHL00195 268 QGTGKSLTAKAIANDWQLP--L---LRLDVGK----------LFGG----IVGE-SESRMRQMIRIAEALSPCILWIDEI 327 (489)
T ss_pred CCCcHHHHHHHHHHHhCCC--E---EEEEhHH----------hccc----ccCh-HHHHHHHHHHHHHhcCCcEEEehhh
Confidence 7999999999999875421 2 2233221 1111 1111 1223344444444348899999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 328 D~~ 330 (489)
T CHL00195 328 DKA 330 (489)
T ss_pred hhh
Confidence 753
No 203
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=93.80 E-value=0.95 Score=50.66 Aligned_cols=40 Identities=5% Similarity=0.079 Sum_probs=26.6
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|++.... .++.+...+........+|++|.+.
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~ 159 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEV 159 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCCh
Confidence 466689999998663 4566666665555566666666544
No 204
>PRK06620 hypothetical protein; Validated
Probab=93.79 E-value=0.2 Score=48.54 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
+|+|||+||+++++..
T Consensus 53 ~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 53 SSSGKTYLTKIWQNLS 68 (214)
T ss_pred CCCCHHHHHHHHHhcc
Confidence 6999999999987764
No 205
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.74 E-value=0.18 Score=44.30 Aligned_cols=104 Identities=16% Similarity=0.325 Sum_probs=39.7
Q ss_pred CchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCCCCCCc--cccccccccceeecccCcccccch-hhhcC
Q 048566 343 PGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQSALGDI--AIIGKLKNLEVLSFLMSDIMQLPE-ELGQL 418 (760)
Q Consensus 343 ~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l 418 (760)
+...|.++.+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ +..+ ..+.++.+|+.+.+.. .+..++. .+..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 344455555555555543 233332 23444445555555443 3331 2344555555555543 3333332 23445
Q ss_pred CCCCEEeccccccccccCcccccCCCCCCEEEcc
Q 048566 419 NKLRLLDLTNCFHLKVIAPNLISSLTRLEELYMG 452 (760)
Q Consensus 419 ~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~ 452 (760)
++|+.+.+.. .+..++...+.+. +|+.+.+.
T Consensus 81 ~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 81 TNLKNIDIPS--NITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TTECEEEETT--T-BEEHTTTTTT--T--EEE-T
T ss_pred ccccccccCc--cccEEchhhhcCC-CceEEEEC
Confidence 5666665543 2444444445554 55555544
No 206
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.73 E-value=0.28 Score=48.22 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=29.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCC------CeEEEEEecCCCCHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLF------DMVVFSEVSQIPDIKRIQQEIAEK 47 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~~i~~~ 47 (760)
+|+|||++|.+++...... - ..++|++....++...+ .++++.
T Consensus 28 ~GsGKT~l~~~ia~~~~~~--~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~ 76 (226)
T cd01393 28 FGSGKTQLCLQLAVEAQLP--GELGGLEGKVVYIDTEGAFRPERL-VQLAVR 76 (226)
T ss_pred CCCChhHHHHHHHHHhhcc--cccCCCcceEEEEecCCCCCHHHH-HHHHHH
Confidence 6999999999998775422 3 56899998776665443 334443
No 207
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.70 E-value=0.86 Score=46.91 Aligned_cols=72 Identities=19% Similarity=0.138 Sum_probs=44.5
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH---------------------HHHHHHHHHHhCCCcCC
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR---------------------KEAWRLFKMMVGDDVEN 127 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~~a~~Lf~~~a~~~~~~ 127 (760)
+++=++|+|+++... .-+.+...+.....++.+|++|.+. +++.+.+... + ..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~--~~- 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G--VS- 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C--CC-
Confidence 466789999998763 3455655555555567777777765 4444444321 1 11
Q ss_pred hhhHHHHHHHHHHhCCcchHHH
Q 048566 128 RELKSTAIDVARACGGLPIALT 149 (760)
Q Consensus 128 ~~~~~~~~~i~~~c~glPLai~ 149 (760)
...+..++..++|.|+...
T Consensus 188 ---~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 188 ---ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred ---hHHHHHHHHHcCCCHHHHH
Confidence 1225677889999997543
No 208
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.68 E-value=0.32 Score=49.69 Aligned_cols=76 Identities=24% Similarity=0.250 Sum_probs=45.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcccc------chhhHHHHHHHHHHHHcCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR------EEVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~~l~~~~r~L 75 (760)
.|+||||||.++....... -..++||+....++.. .++.+|.+.+ .+..++....+.+-++++.--+
T Consensus 62 ~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~l 134 (322)
T PF00154_consen 62 ESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDL 134 (322)
T ss_dssp TTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESE
T ss_pred CCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccE
Confidence 4789999999999876533 4568999998766553 5566665443 1223344444444455566669
Q ss_pred EEEECCCCc
Q 048566 76 VVLDNIWKH 84 (760)
Q Consensus 76 lVlDdv~~~ 84 (760)
||+|-|-..
T Consensus 135 VVvDSv~al 143 (322)
T PF00154_consen 135 VVVDSVAAL 143 (322)
T ss_dssp EEEE-CTT-
T ss_pred EEEecCccc
Confidence 999998654
No 209
>CHL00176 ftsH cell division protein; Validated
Probab=93.62 E-value=0.46 Score=53.92 Aligned_cols=63 Identities=25% Similarity=0.411 Sum_probs=35.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||++|+++++...+. |+.++.. .+.. .. .+. .......+++......+.+|++|++
T Consensus 225 pGTGKT~LAralA~e~~~p-------~i~is~s----~f~~-~~--~g~------~~~~vr~lF~~A~~~~P~ILfIDEI 284 (638)
T CHL00176 225 PGTGKTLLAKAIAGEAEVP-------FFSISGS----EFVE-MF--VGV------GAARVRDLFKKAKENSPCIVFIDEI 284 (638)
T ss_pred CCCCHHHHHHHHHHHhCCC-------eeeccHH----HHHH-Hh--hhh------hHHHHHHHHHHHhcCCCcEEEEecc
Confidence 7999999999999875421 3333211 1110 00 010 1122344444444468899999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 285 D~l 287 (638)
T CHL00176 285 DAV 287 (638)
T ss_pred hhh
Confidence 643
No 210
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.59 E-value=0.32 Score=47.47 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPD 36 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~ 36 (760)
+|+||||+|.+++.....+ -..++|++....+.
T Consensus 28 ~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 28 PGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 7999999999999887522 34688888765543
No 211
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.52 E-value=0.89 Score=51.78 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=24.7
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+++.. +.++.+...+........+|++|.+.
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 46678999999865 34566655555444455555555444
No 212
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.51 E-value=0.13 Score=49.02 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=23.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCC--------CeEEEEEecCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLF--------DMVVFSEVSQI 34 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F--------~~~~wv~~~~~ 34 (760)
+|+||||++.+++........| ..++|++....
T Consensus 41 ~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 41 PGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp STSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 7999999999999987643333 25889987665
No 213
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.46 E-value=0.2 Score=52.39 Aligned_cols=93 Identities=20% Similarity=0.194 Sum_probs=57.9
Q ss_pred CCCcHHHHHHHHHHHHhhhc-------------------CCCeEEEEEecCCCC---HHHHHHHHHHHhCccccchhhHH
Q 048566 2 GGIGKTTLVKKVARQAMEDK-------------------LFDMVVFSEVSQIPD---IKRIQQEIAEKLGLELREEVESS 59 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~-------------------~F~~~~wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~ 59 (760)
.|+||||+|.++++..-... ....+..++.+.... ..+..+++.+.......
T Consensus 33 ~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~------ 106 (325)
T COG0470 33 PGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPL------ 106 (325)
T ss_pred CCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCCC------
Confidence 59999999999999865322 124455666665544 34455555554433221
Q ss_pred HHHHHHHHHHcCCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 60 RASRIFERLRNEKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 60 ~~~~~~~~l~~~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
.++.-++++|+++... .-+.+...........++|++|...
T Consensus 107 ----------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~ 149 (325)
T COG0470 107 ----------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDP 149 (325)
T ss_pred ----------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCCh
Confidence 2577888999998763 2344444444555667788888755
No 214
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.41 E-value=0.056 Score=52.20 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=23.5
Q ss_pred CCCCCCccEEEeeccCCcccccCCc---hhhcCCCCceEEEecCCCCC
Q 048566 320 GLECPNLEFLCISLKDSSLEINIPG---NFFIGMKKLRVLDFTRMQFS 364 (760)
Q Consensus 320 ~~~~~~Lr~L~l~~~~~~~~~~~~~---~~~~~l~~Lr~L~l~~~~~~ 364 (760)
..+||+|+..+++.+ .+....|+ .++++-..|..|.+++|.+.
T Consensus 88 Llkcp~l~~v~LSDN--Afg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDN--AFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeecccc--ccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 346777777777633 22212332 23455666777777766654
No 215
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.25 Score=51.06 Aligned_cols=77 Identities=29% Similarity=0.380 Sum_probs=49.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccch--hhHHHHHHHHHHHHcCCcEEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREE--VESSRASRIFERLRNEKKILVVLD 79 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~~r~LlVlD 79 (760)
+|||||||..+++.+...++ .+++|+-.+. .. -.+--+++++.+...- -.+-..+.+.+.+.+.+.-++|+|
T Consensus 102 PGIGKSTLLLQva~~lA~~~---~vLYVsGEES--~~-QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVID 175 (456)
T COG1066 102 PGIGKSTLLLQVAARLAKRG---KVLYVSGEES--LQ-QIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVID 175 (456)
T ss_pred CCCCHHHHHHHHHHHHHhcC---cEEEEeCCcC--HH-HHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEEe
Confidence 69999999999999987442 7778765443 22 2233456676543321 112234556666666689999999
Q ss_pred CCCCc
Q 048566 80 NIWKH 84 (760)
Q Consensus 80 dv~~~ 84 (760)
-+...
T Consensus 176 SIQT~ 180 (456)
T COG1066 176 SIQTL 180 (456)
T ss_pred cccee
Confidence 98543
No 216
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.22 E-value=0.35 Score=50.22 Aligned_cols=49 Identities=20% Similarity=0.211 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHHHHhh---hcCC-CeEEEEEecCCCCHHHHHHHHHHHhCcc
Q 048566 2 GGIGKTTLVKKVARQAME---DKLF-DMVVFSEVSQIPDIKRIQQEIAEKLGLE 51 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~---~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 51 (760)
+|+|||++|..++-.... .+.- ..++||+....|+...+ .+|++.++.+
T Consensus 132 ~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 132 FRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred CCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 799999999988854321 1111 26999999988877665 4566666543
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=93.21 E-value=0.53 Score=44.85 Aligned_cols=78 Identities=23% Similarity=0.243 Sum_probs=48.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHHHHHHHHHHHhCccccc----hhhHHHHHHHHHHHHcCCcEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIKRIQQEIAEKLGLELRE----EVESSRASRIFERLRNEKKILV 76 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~~l~~~~r~Ll 76 (760)
.|+||||.+.+++.....+ -..+..++.... ....+-++..++.++.+... .++.+.+.+..++....+.=+|
T Consensus 10 tGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~v 87 (196)
T PF00448_consen 10 TGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYDLV 87 (196)
T ss_dssp TTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEE
T ss_pred CCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCCEE
Confidence 6999999998888887644 446888887643 35667788889999877432 1233334444444443233466
Q ss_pred EEECC
Q 048566 77 VLDNI 81 (760)
Q Consensus 77 VlDdv 81 (760)
++|=.
T Consensus 88 lIDT~ 92 (196)
T PF00448_consen 88 LIDTA 92 (196)
T ss_dssp EEEE-
T ss_pred EEecC
Confidence 77765
No 218
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.16 E-value=1.7 Score=42.33 Aligned_cols=83 Identities=19% Similarity=0.312 Sum_probs=44.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHH-cCCcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLR-NEKKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~r~LlVlDd 80 (760)
.|.|||++++++.+....++ .=-|.|.+. ....+..+...++ ...||+|++||
T Consensus 61 rGtGKSSlVkall~~y~~~G----LRlIev~k~----------------------~L~~l~~l~~~l~~~~~kFIlf~DD 114 (249)
T PF05673_consen 61 RGTGKSSLVKALLNEYADQG----LRLIEVSKE----------------------DLGDLPELLDLLRDRPYKFILFCDD 114 (249)
T ss_pred CCCCHHHHHHHHHHHHhhcC----ceEEEECHH----------------------HhccHHHHHHHHhcCCCCEEEEecC
Confidence 59999999999999877543 112233321 1111223333333 25899999999
Q ss_pred CCCc---ccccccccccc---CCCCCcEEEEeeCCH
Q 048566 81 IWKH---LDLETVGIPFG---EDHKGCKLLLTARDR 110 (760)
Q Consensus 81 v~~~---~~~~~l~~~~~---~~~~gs~IlvTTR~~ 110 (760)
..-. ..+..++..+. ...+...+|..|-++
T Consensus 115 LsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 115 LSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred CCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 8643 23444443332 122333455555554
No 219
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.16 E-value=0.4 Score=47.66 Aligned_cols=83 Identities=24% Similarity=0.267 Sum_probs=50.9
Q ss_pred CCCcHHHHHHHHHHHHh--hhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCcccc-------chhhHH------HHHHHH
Q 048566 2 GGIGKTTLVKKVARQAM--EDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELR-------EEVESS------RASRIF 65 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~--~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-------~~~~~~------~~~~~~ 65 (760)
.|+|||+|+..+.++.. .++.-+.++++-+.++. .+.++.+++...=..+.. ++.... ..-.+-
T Consensus 78 ~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiA 157 (276)
T cd01135 78 SGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTA 157 (276)
T ss_pred CCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 58999999999988754 12234678888888765 566777776653211110 111111 122344
Q ss_pred HHHH-c-CCcEEEEEECCCCc
Q 048566 66 ERLR-N-EKKILVVLDNIWKH 84 (760)
Q Consensus 66 ~~l~-~-~~r~LlVlDdv~~~ 84 (760)
++++ + ++++|+++||+...
T Consensus 158 Eyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 158 EYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHhccCCeEEEEEcChhHH
Confidence 4443 2 69999999998654
No 220
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.01 E-value=0.38 Score=50.45 Aligned_cols=81 Identities=20% Similarity=0.198 Sum_probs=49.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC-CCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ-IPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDd 80 (760)
.|+||||++.+++.....+.....+..++... .....+-++...+.++.+...............++. ++-+|++|.
T Consensus 146 tGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~--~~DlVLIDT 223 (374)
T PRK14722 146 TGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR--NKHMVLIDT 223 (374)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc--CCCEEEEcC
Confidence 69999999999998865332234577777544 234556666667777766543222222334444554 445666888
Q ss_pred CCCc
Q 048566 81 IWKH 84 (760)
Q Consensus 81 v~~~ 84 (760)
.-..
T Consensus 224 aG~~ 227 (374)
T PRK14722 224 IGMS 227 (374)
T ss_pred CCCC
Confidence 7543
No 221
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.97 E-value=0.66 Score=42.55 Aligned_cols=33 Identities=27% Similarity=0.310 Sum_probs=25.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPD 36 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~ 36 (760)
+|+||||+|+.++..... .-..++|++......
T Consensus 8 ~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 8 TGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 699999999999998753 245688888776543
No 222
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.95 E-value=1.3 Score=49.86 Aligned_cols=40 Identities=10% Similarity=0.128 Sum_probs=24.4
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+++.. ..++.|...+........+|++|...
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 46678899999865 34566655554433445555555444
No 223
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.26 Score=54.36 Aligned_cols=65 Identities=26% Similarity=0.291 Sum_probs=42.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC--CHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP--DIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLD 79 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlD 79 (760)
.|+|||+||+++++... +...-.+..|+++.-. .+.++++.+-.-+ .+.+. -.+-+||||
T Consensus 440 ~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf----------------se~~~-~~PSiIvLD 501 (952)
T KOG0735|consen 440 KGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF----------------SEALW-YAPSIIVLD 501 (952)
T ss_pred CCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHH----------------HHHHh-hCCcEEEEc
Confidence 59999999999999987 5555567788877533 3333333332221 22222 278899999
Q ss_pred CCCCc
Q 048566 80 NIWKH 84 (760)
Q Consensus 80 dv~~~ 84 (760)
|++-.
T Consensus 502 dld~l 506 (952)
T KOG0735|consen 502 DLDCL 506 (952)
T ss_pred chhhh
Confidence 99643
No 224
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.93 E-value=1.5 Score=45.30 Aligned_cols=101 Identities=14% Similarity=0.162 Sum_probs=52.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCC---e-----EEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHH----
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFD---M-----VVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLR---- 69 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~---~-----~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~---- 69 (760)
.|+||+++|++++...-.++... | +-++.....+|+..+ ..........+.+..+.+.+.
T Consensus 33 ~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p~~~~~I~id~iR~l~~~~~~~~~ 104 (325)
T PRK06871 33 SGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------EPIDNKDIGVDQVREINEKVSQHAQ 104 (325)
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------ccccCCCCCHHHHHHHHHHHhhccc
Confidence 69999999999998764322111 0 011111111121100 000000112233444444443
Q ss_pred cCCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 70 NEKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 70 ~~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
.+++=++|+|+++... ..+.+...+.....+..+|++|.+.
T Consensus 105 ~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~ 147 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLS 147 (325)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 2566688899998763 4566666666555566777777765
No 225
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.89 E-value=0.33 Score=47.07 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=30.9
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEE--ecC-----CCCHHH--HHHHHHHHhCcc
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSE--VSQ-----IPDIKR--IQQEIAEKLGLE 51 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~--~~~-----~~~~~~--~~~~i~~~l~~~ 51 (760)
|+|.||||..+.++.+...++.-..++=.+ |.+ .-+++. -+++...+.+..
T Consensus 27 MAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 27 MAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred cCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 899999999999999987553222333332 111 224443 355677765443
No 226
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=92.83 E-value=0.5 Score=52.54 Aligned_cols=63 Identities=29% Similarity=0.316 Sum_probs=34.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||++|+++++..... ++.++.. .+. ...... ....+..+++......+.+|++|++
T Consensus 97 pGtGKT~la~alA~~~~~~-------~~~i~~~----~~~----~~~~g~-----~~~~l~~~f~~a~~~~p~Il~iDEi 156 (495)
T TIGR01241 97 PGTGKTLLAKAVAGEAGVP-------FFSISGS----DFV----EMFVGV-----GASRVRDLFEQAKKNAPCIIFIDEI 156 (495)
T ss_pred CCCCHHHHHHHHHHHcCCC-------eeeccHH----HHH----HHHhcc-----cHHHHHHHHHHHHhcCCCEEEEech
Confidence 7999999999999875421 2332211 111 111000 1122334444444347789999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 157 d~l 159 (495)
T TIGR01241 157 DAV 159 (495)
T ss_pred hhh
Confidence 653
No 227
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.79 E-value=1.2 Score=48.54 Aligned_cols=40 Identities=10% Similarity=0.208 Sum_probs=24.9
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++-++|+|+++... ..+.+...+.....+..+|++|.+.
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~ 161 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEI 161 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCCh
Confidence 467788999987552 3445555555444466677776543
No 228
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=92.77 E-value=0.46 Score=49.04 Aligned_cols=48 Identities=23% Similarity=0.176 Sum_probs=31.8
Q ss_pred CCCcHHHHHHHHHHHHhh---hc-CCCeEEEEEecCCCCHHHHHHHHHHHhCc
Q 048566 2 GGIGKTTLVKKVARQAME---DK-LFDMVVFSEVSQIPDIKRIQQEIAEKLGL 50 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~---~~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 50 (760)
+|+||||+|..++..... .+ .-..++|++....++... +.++++.++.
T Consensus 105 ~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 105 FRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred CCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 699999999998864321 11 123679999888777665 4445555544
No 229
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=0.28 Score=53.09 Aligned_cols=63 Identities=29% Similarity=0.409 Sum_probs=42.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||-||++|+|....- |++|... +++..-. | + .+..+..++++-+...++.|+||.+
T Consensus 554 PGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkYV---G-----E-SErAVR~vFqRAR~saPCVIFFDEi 613 (802)
T KOG0733|consen 554 PGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKYV---G-----E-SERAVRQVFQRARASAPCVIFFDEI 613 (802)
T ss_pred CCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHHh---h-----h-HHHHHHHHHHHhhcCCCeEEEecch
Confidence 7999999999999998633 4655542 2222111 1 1 2344567777777679999999998
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 614 DaL 616 (802)
T KOG0733|consen 614 DAL 616 (802)
T ss_pred hhc
Confidence 643
No 230
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=92.67 E-value=2.7 Score=45.93 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=51.8
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcccc-----chhhHHHHHHHHHHHH----cCCc
Q 048566 3 GIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR-----EEVESSRASRIFERLR----NEKK 73 (760)
Q Consensus 3 GiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l~----~~~r 73 (760)
|+||||+|+-++...-..+. ...+.++.-...+.|...-..+.- .....+.++.+++... .++-
T Consensus 48 GvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ry 120 (515)
T COG2812 48 GVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRY 120 (515)
T ss_pred CcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccc
Confidence 99999999999987543211 111222222333444333111111 1112233444554443 2455
Q ss_pred EEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 74 ILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 74 ~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
=..|+|.|.-. ..|+.+..-+......-+.|+.|++.
T Consensus 121 KVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~ 159 (515)
T COG2812 121 KVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEP 159 (515)
T ss_pred eEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCc
Confidence 57888998754 46777766655444445555555555
No 231
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.66 E-value=0.41 Score=44.06 Aligned_cols=40 Identities=13% Similarity=0.123 Sum_probs=30.3
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++=++|+||++.. +..+.|...+.....++++|++|++.
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 36778999999876 45677777777777788999999875
No 232
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.62 E-value=0.49 Score=50.98 Aligned_cols=82 Identities=24% Similarity=0.361 Sum_probs=51.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccc------c-chhhH------HHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLEL------R-EEVES------SRASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~-~~~~~------~~~~~~~~~ 67 (760)
+|+|||||+.++++.... ++-+.++++-+.++. .+.++.+++...=.... . ++... ..+..+-++
T Consensus 152 ~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAEy 230 (461)
T PRK12597 152 AGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAEY 230 (461)
T ss_pred CCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 599999999999988763 356888888887665 45566666654321110 0 11111 112334444
Q ss_pred HH-c-CCcEEEEEECCCCc
Q 048566 68 LR-N-EKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~-~-~~r~LlVlDdv~~~ 84 (760)
++ + |+++|+++||+...
T Consensus 231 frd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 231 LRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHhcCCceEEEeccchHH
Confidence 43 2 79999999999654
No 233
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.61 E-value=0.66 Score=54.92 Aligned_cols=70 Identities=26% Similarity=0.548 Sum_probs=40.1
Q ss_pred CCCcHHHHHHHHHHHHhhhc---CC-CeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDK---LF-DMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVV 77 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~---~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlV 77 (760)
+|+|||++|..++....... .. +..+|. + +...++. +..... +.++.+..+.+.+...++.+|+
T Consensus 209 pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a------g~~~~g-e~e~rl~~i~~~~~~~~~~ILf 276 (821)
T CHL00095 209 PGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA------GTKYRG-EFEERLKRIFDEIQENNNIILV 276 (821)
T ss_pred CCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc------cCCCcc-HHHHHHHHHHHHHHhcCCeEEE
Confidence 79999999999999864211 11 234442 1 1111111 112121 2344556666666545789999
Q ss_pred EECCCC
Q 048566 78 LDNIWK 83 (760)
Q Consensus 78 lDdv~~ 83 (760)
+|++..
T Consensus 277 iDEih~ 282 (821)
T CHL00095 277 IDEVHT 282 (821)
T ss_pred EecHHH
Confidence 999953
No 234
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.55 E-value=0.38 Score=50.70 Aligned_cols=77 Identities=25% Similarity=0.353 Sum_probs=44.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccch--hhHHHHHHHHHHHHcCCcEEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREE--VESSRASRIFERLRNEKKILVVLD 79 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~~r~LlVlD 79 (760)
+|+|||||+.+++.....+ -..++|++..+. ...+ +.-++.++...... ......+.+.+.+...+.-+||+|
T Consensus 91 pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVVID 165 (372)
T cd01121 91 PGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIEELKPDLVIID 165 (372)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEEEc
Confidence 6999999999999887633 356888876543 2222 22345555432210 011123444445444466788999
Q ss_pred CCCC
Q 048566 80 NIWK 83 (760)
Q Consensus 80 dv~~ 83 (760)
.+..
T Consensus 166 SIq~ 169 (372)
T cd01121 166 SIQT 169 (372)
T ss_pred chHH
Confidence 8843
No 235
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.54 E-value=0.39 Score=45.03 Aligned_cols=28 Identities=25% Similarity=0.456 Sum_probs=22.1
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSE 30 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~ 30 (760)
+.|.||||+|+.+++.... .+..+++++
T Consensus 15 ~~GsGKst~a~~l~~~l~~--~~~~~~~~~ 42 (176)
T PRK05541 15 LAGSGKTTIAKALYERLKL--KYSNVIYLD 42 (176)
T ss_pred CCCCCHHHHHHHHHHHHHH--cCCcEEEEe
Confidence 4799999999999998863 366666664
No 236
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.54 E-value=0.38 Score=42.20 Aligned_cols=115 Identities=17% Similarity=0.344 Sum_probs=58.3
Q ss_pred CCCCccEEEeeccCCcccccCCchhhcCCCCceEEEecCCCCCCCh-hhhhhhccCCeeEecCCCCCC--cccccccccc
Q 048566 322 ECPNLEFLCISLKDSSLEINIPGNFFIGMKKLRVLDFTRMQFSSFP-SSIDLLVNLHTLCLDQSALGD--IAIIGKLKNL 398 (760)
Q Consensus 322 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--~~~~~~l~~L 398 (760)
++.+|+.+.+. . .+. .++...|..+..|+.+.+..+ +..++ ..+.++..|+.+.+.. .+.. ...+..+.+|
T Consensus 10 ~~~~l~~i~~~--~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 10 NCSNLESITFP--N-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp T-TT--EEEET--S-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred CCCCCCEEEEC--C-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 56677877765 2 222 367777888888888888774 66554 3566776788888865 3333 2456678888
Q ss_pred ceeecccCcccccch-hhhcCCCCCEEeccccccccccCcccccCCCCC
Q 048566 399 EVLSFLMSDIMQLPE-ELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRL 446 (760)
Q Consensus 399 ~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L 446 (760)
+.+.+..+ +..++. .+.+. +|+.+.+.. .+..++...+.+.++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 88888664 555553 45565 888887765 4556666656665555
No 237
>PRK04296 thymidine kinase; Provisional
Probab=92.42 E-value=0.14 Score=48.72 Aligned_cols=101 Identities=18% Similarity=0.098 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccc---hhhHHHHHHHHHHHHcCCcEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELRE---EVESSRASRIFERLRNEKKILVVL 78 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~l~~~~r~LlVl 78 (760)
.|.||||+|..++.+.... -..++.+. ..++.+.....++++++.+... ....+....+.+ ..++.-+||+
T Consensus 11 ~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~~dvviI 84 (190)
T PRK04296 11 MNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGEKIDCVLI 84 (190)
T ss_pred CCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCCCCCEEEE
Confidence 4999999999999887632 33444442 1112222233456666543322 112223333333 3334558999
Q ss_pred ECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 79 DNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 79 Ddv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
|.+.-. ++..++...+ ...|..|++|.++.
T Consensus 85 DEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~ 116 (190)
T PRK04296 85 DEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDT 116 (190)
T ss_pred EccccCCHHHHHHHHHHH--HHcCCeEEEEecCc
Confidence 999543 2222222221 33577899999975
No 238
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=1 Score=48.93 Aligned_cols=63 Identities=24% Similarity=0.349 Sum_probs=43.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||.||++++++..+- ++.++.. +|..++.+. .++.+.+++..-.+.-++++++|++
T Consensus 232 PGCGKT~lA~AiAgel~vP-------f~~isAp--------eivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeI 291 (802)
T KOG0733|consen 232 PGCGKTSLANAIAGELGVP-------FLSISAP--------EIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEI 291 (802)
T ss_pred CCccHHHHHHHHhhhcCCc-------eEeecch--------hhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeecc
Confidence 7999999999999998743 3333321 233443332 2355667777766678999999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+-.
T Consensus 292 DAI 294 (802)
T KOG0733|consen 292 DAI 294 (802)
T ss_pred ccc
Confidence 764
No 239
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.40 E-value=0.48 Score=50.78 Aligned_cols=82 Identities=21% Similarity=0.390 Sum_probs=51.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccc------c-chhh------HHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLEL------R-EEVE------SSRASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~-~~~~------~~~~~~~~~~ 67 (760)
+|+|||+|+.++.+... +.+-+.++++-+.++. .+.++.+++...=.... . ++.. ...+-.+-++
T Consensus 147 ~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAEy 225 (449)
T TIGR03305 147 AGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAEY 225 (449)
T ss_pred CCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 69999999999988854 2334788888887765 45566666654311110 0 1111 1122344455
Q ss_pred HH--cCCcEEEEEECCCCc
Q 048566 68 LR--NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~--~~~r~LlVlDdv~~~ 84 (760)
++ +|+++|+++||+...
T Consensus 226 frd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 226 FRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHhcCCceEEEecChHHH
Confidence 54 379999999999654
No 240
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.38 E-value=1.6 Score=44.49 Aligned_cols=63 Identities=29% Similarity=0.317 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||-||++|+++-... |+.|..+ ++ .+..-+. -...+..+++--+...+..|++|.+
T Consensus 194 PGTGKTLLAkAVA~~T~At-------FIrvvgS----El----VqKYiGE-----GaRlVRelF~lArekaPsIIFiDEI 253 (406)
T COG1222 194 PGTGKTLLAKAVANQTDAT-------FIRVVGS----EL----VQKYIGE-----GARLVRELFELAREKAPSIIFIDEI 253 (406)
T ss_pred CCCcHHHHHHHHHhccCce-------EEEeccH----HH----HHHHhcc-----chHHHHHHHHHHhhcCCeEEEEech
Confidence 7999999999999987644 4444332 22 2221111 0123444555555568899999988
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 254 DAI 256 (406)
T COG1222 254 DAI 256 (406)
T ss_pred hhh
Confidence 654
No 241
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=92.18 E-value=0.8 Score=47.57 Aligned_cols=48 Identities=27% Similarity=0.324 Sum_probs=33.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCC----CeEEEEEecCCCCHHHHHHHHHHHhCc
Q 048566 2 GGIGKTTLVKKVARQAMEDKLF----DMVVFSEVSQIPDIKRIQQEIAEKLGL 50 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~i~~~l~~ 50 (760)
+|+|||++|.+++........+ ..++||+....++...+. ++++.++.
T Consensus 111 ~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 111 FGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 6999999999998765322111 369999998877776654 44455543
No 242
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.11 E-value=0.78 Score=45.35 Aligned_cols=39 Identities=8% Similarity=0.298 Sum_probs=27.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEI 44 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 44 (760)
+|.|||++|.++...... .-..++|++..+ +..++.+++
T Consensus 30 pGsGKT~la~~~l~~~~~--~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 30 PGTGKSIFSQQFLWNGLQ--MGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCCCHHHHHHHHHHHHHH--cCCcEEEEEeeC--CHHHHHHHH
Confidence 799999999988776542 246788998765 444555553
No 243
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.97 E-value=3.7 Score=42.29 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=27.4
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++=++|+|+++.. +..+.+...+.....++.+|++|.+.
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 45568888999876 34566666666555667777777765
No 244
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.93 E-value=0.094 Score=27.57 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=5.5
Q ss_pred ccceeecccCccccc
Q 048566 397 NLEVLSFLMSDIMQL 411 (760)
Q Consensus 397 ~L~~L~l~~~~i~~l 411 (760)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 245
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=91.89 E-value=1.3 Score=44.10 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=72.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCe-EEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHH---H--cCCc-E
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDM-VVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERL---R--NEKK-I 74 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l---~--~~~r-~ 74 (760)
+|.|||+-|+++++..-..+-|.+ ++=.++|......-+-+++- ...++.... . .-++ -
T Consensus 66 pGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik--------------~fakl~~~~~~~~~~~~~~fK 131 (346)
T KOG0989|consen 66 PGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIK--------------NFAKLTVLLKRSDGYPCPPFK 131 (346)
T ss_pred CCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhc--------------CHHHHhhccccccCCCCCcce
Confidence 799999999999998766667755 44556665443321111110 011111100 0 0133 4
Q ss_pred EEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH---------------------HHHHHHHHHHhCCCcCChhhH
Q 048566 75 LVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR---------------------KEAWRLFKMMVGDDVENRELK 131 (760)
Q Consensus 75 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~---------------------~~a~~Lf~~~a~~~~~~~~~~ 131 (760)
.+|||+++.. +.|..++....+.....|-++.+... ++..+-+...+......- -.
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~-d~ 210 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI-DD 210 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC-CH
Confidence 7889999876 57888877766666666655544443 344444444441111111 12
Q ss_pred HHHHHHHHHhCCc-chHHHH
Q 048566 132 STAIDVARACGGL-PIALTT 150 (760)
Q Consensus 132 ~~~~~i~~~c~gl-PLai~~ 150 (760)
+..+.|++.++|- --|+.+
T Consensus 211 ~al~~I~~~S~GdLR~Ait~ 230 (346)
T KOG0989|consen 211 DALKLIAKISDGDLRRAITT 230 (346)
T ss_pred HHHHHHHHHcCCcHHHHHHH
Confidence 4566788888773 344433
No 246
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.86 E-value=0.2 Score=46.51 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=16.9
Q ss_pred CCCCcHHHHHHHHHHHHhhh
Q 048566 1 MGGIGKTTLVKKVARQAMED 20 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~ 20 (760)
.+|+||||+|++++...+.+
T Consensus 9 yPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 9 YPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred CCCCCchHHHHHHHHHHHHh
Confidence 47999999999999887643
No 247
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=91.84 E-value=0.55 Score=45.24 Aligned_cols=77 Identities=26% Similarity=0.452 Sum_probs=45.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccc-------cchhhHH------HHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLEL-------REEVESS------RASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~~~ 67 (760)
+|+|||+|+..+.+... -+.++++-+.++. .+.++.+++...-..+. ..+.... ..-.+-++
T Consensus 24 ~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AEy 99 (215)
T PF00006_consen 24 AGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTALTIAEY 99 (215)
T ss_dssp TTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccchhhhHH
Confidence 69999999999999874 3456788887664 55566666543311110 0111101 11122223
Q ss_pred HH-cCCcEEEEEECCC
Q 048566 68 LR-NEKKILVVLDNIW 82 (760)
Q Consensus 68 l~-~~~r~LlVlDdv~ 82 (760)
++ +|+++|+++||+.
T Consensus 100 frd~G~dVlli~Dslt 115 (215)
T PF00006_consen 100 FRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHTTSEEEEEEETHH
T ss_pred HhhcCCceeehhhhhH
Confidence 32 4799999999984
No 248
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.80 E-value=0.66 Score=47.16 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=42.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDd 80 (760)
+|+||||++..++.....+..-..|..|+..... ...+.+....+.++.+..............+.+. ..=+|++|.
T Consensus 203 tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~--~~d~vliDt 280 (282)
T TIGR03499 203 TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR--DKDLILIDT 280 (282)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc--CCCEEEEeC
Confidence 6999999999999887643122356677765422 2233334444555554432222233344444443 345777775
Q ss_pred C
Q 048566 81 I 81 (760)
Q Consensus 81 v 81 (760)
.
T Consensus 281 ~ 281 (282)
T TIGR03499 281 A 281 (282)
T ss_pred C
Confidence 3
No 249
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=91.73 E-value=0.75 Score=45.13 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=29.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQ 42 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 42 (760)
||+||||+|..++.....+ . ..|+-||.....+.....+
T Consensus 11 GGvGKTT~a~nLA~~la~~-G-~~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 11 GGAGKTTALMGLCAALASD-G-KRVALFEADENRPLTRWKE 49 (231)
T ss_pred CCccHHHHHHHHHHHHHhC-C-CcEEEEeCCCCCCHHHHHH
Confidence 9999999999999887643 2 2577788877666555443
No 250
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.69 E-value=0.61 Score=54.46 Aligned_cols=70 Identities=17% Similarity=0.340 Sum_probs=39.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcC---C-CeEEE-EEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKL---F-DMVVF-SEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILV 76 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~---F-~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~Ll 76 (760)
+|+|||++|+.+++....... + +..+| +++ ..+... .... .+.++.+..+.+.+...++.+|
T Consensus 212 pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~------~~l~a~------~~~~-g~~e~~l~~i~~~~~~~~~~IL 278 (731)
T TIGR02639 212 PGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM------GSLLAG------TKYR-GDFEERLKAVVSEIEKEPNAIL 278 (731)
T ss_pred CCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH------HHHhhh------cccc-chHHHHHHHHHHHHhccCCeEE
Confidence 799999999999998743211 1 33333 221 111110 0000 1233455666666654468999
Q ss_pred EEECCCCc
Q 048566 77 VLDNIWKH 84 (760)
Q Consensus 77 VlDdv~~~ 84 (760)
++|++...
T Consensus 279 fiDEih~l 286 (731)
T TIGR02639 279 FIDEIHTI 286 (731)
T ss_pred EEecHHHH
Confidence 99998743
No 251
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=91.67 E-value=0.75 Score=49.47 Aligned_cols=82 Identities=21% Similarity=0.358 Sum_probs=49.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccc------cchh-hH------HHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLEL------REEV-ES------SRASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~-~~------~~~~~~~~~ 67 (760)
.|+|||||+.+++....... =+.++++-+.++. .+.++++++...=.... ..+. .. ..+..+-++
T Consensus 153 ~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEy 231 (463)
T PRK09280 153 AGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEY 231 (463)
T ss_pred CCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999988766332 2467777777665 55667776665321110 0111 11 112233444
Q ss_pred HH--cCCcEEEEEECCCCc
Q 048566 68 LR--NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~--~~~r~LlVlDdv~~~ 84 (760)
++ +|+++|+++||+...
T Consensus 232 frd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 232 FRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHhcCCceEEEecchHHH
Confidence 42 479999999999654
No 252
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.62 E-value=1.1 Score=43.96 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=25.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEI 44 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 44 (760)
+|.||||+|.+++.....+ . ..+++++... +..++.+++
T Consensus 33 ~G~GKTtl~~~~~~~~~~~-g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 33 ESTGKSILSQRLAYGFLQN-G-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCCCHHHHHHHHHHHHHhC-C-CcEEEEeCCC--CHHHHHHHH
Confidence 6999999997777765322 2 4566776333 445666665
No 253
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.59 E-value=0.22 Score=44.46 Aligned_cols=24 Identities=42% Similarity=0.617 Sum_probs=20.0
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCe
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDM 25 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~ 25 (760)
|+|+||||+++.+++..+.++ |..
T Consensus 13 ~PGvGKtTl~~ki~e~L~~~g-~kv 36 (179)
T COG1618 13 RPGVGKTTLVLKIAEKLREKG-YKV 36 (179)
T ss_pred CCCccHHHHHHHHHHHHHhcC-cee
Confidence 799999999999999988543 654
No 254
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=91.59 E-value=0.29 Score=52.37 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=33.1
Q ss_pred CcEEEEEECCCCccccccccccccCCCCCcEEEEeeCCH
Q 048566 72 KKILVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 72 ~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
++..|+||.|.....|+.....+.+.++. +|++|+-+.
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss 131 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSS 131 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCch
Confidence 77899999999999999887778777777 899998876
No 255
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=91.54 E-value=0.92 Score=46.99 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=33.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcC----CCeEEEEEecCCCCHHHHHHHHHHHhCc
Q 048566 2 GGIGKTTLVKKVARQAMEDKL----FDMVVFSEVSQIPDIKRIQQEIAEKLGL 50 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 50 (760)
+|+||||+|.+++........ =..++||+....++...+. ++++.++.
T Consensus 104 ~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 104 FGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 699999999999877542110 1269999998878776544 44555543
No 256
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.54 E-value=1.8 Score=46.27 Aligned_cols=68 Identities=29% Similarity=0.458 Sum_probs=39.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHH---cCCcEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLR---NEKKILVVL 78 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~---~~~r~LlVl 78 (760)
+|.|||+||..++... .|..+=-++.... +|.+ +......+.+.+. ...--.||+
T Consensus 547 ~~sGKTaLAA~iA~~S----~FPFvKiiSpe~m-------------iG~s-----EsaKc~~i~k~F~DAYkS~lsiivv 604 (744)
T KOG0741|consen 547 PGSGKTALAAKIALSS----DFPFVKIISPEDM-------------IGLS-----ESAKCAHIKKIFEDAYKSPLSIIVV 604 (744)
T ss_pred CCCChHHHHHHHHhhc----CCCeEEEeChHHc-------------cCcc-----HHHHHHHHHHHHHHhhcCcceEEEE
Confidence 6999999999999874 4876655432211 1111 1122233333322 135578999
Q ss_pred ECCCCcccccccc
Q 048566 79 DNIWKHLDLETVG 91 (760)
Q Consensus 79 Ddv~~~~~~~~l~ 91 (760)
||+...-+|-.+.
T Consensus 605 DdiErLiD~vpIG 617 (744)
T KOG0741|consen 605 DDIERLLDYVPIG 617 (744)
T ss_pred cchhhhhcccccC
Confidence 9998876665443
No 257
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.50 E-value=2.5 Score=43.68 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=29.6
Q ss_pred HHHHHHHHHHc----CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 60 RASRIFERLRN----EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 60 ~~~~~~~~l~~----~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
.+..+.+.+.. +++-++|+|+++... ..+.+...+....++ .+|++|.+.
T Consensus 108 ~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~-~fILi~~~~ 163 (314)
T PRK07399 108 QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNG-TLILIAPSP 163 (314)
T ss_pred HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCC-eEEEEECCh
Confidence 34455555542 567789999998763 345555555433333 566666555
No 258
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.44 E-value=1 Score=52.78 Aligned_cols=62 Identities=31% Similarity=0.360 Sum_probs=36.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||++|+++++.... .| +.++.. +++... ..+ .+..+..+++..+...+.+|++|++
T Consensus 496 pGtGKT~lakalA~e~~~--~f-----i~v~~~--------~l~~~~----vGe-se~~i~~~f~~A~~~~p~iifiDEi 555 (733)
T TIGR01243 496 PGTGKTLLAKAVATESGA--NF-----IAVRGP--------EILSKW----VGE-SEKAIREIFRKARQAAPAIIFFDEI 555 (733)
T ss_pred CCCCHHHHHHHHHHhcCC--CE-----EEEehH--------HHhhcc----cCc-HHHHHHHHHHHHHhcCCEEEEEECh
Confidence 699999999999998642 22 232211 112111 111 1234455666555557899999998
Q ss_pred CC
Q 048566 82 WK 83 (760)
Q Consensus 82 ~~ 83 (760)
+.
T Consensus 556 d~ 557 (733)
T TIGR01243 556 DA 557 (733)
T ss_pred hh
Confidence 64
No 259
>PRK04328 hypothetical protein; Provisional
Probab=91.38 E-value=0.77 Score=45.76 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=28.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCc
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGL 50 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 50 (760)
+|.|||++|.++......+ -..++|++..+. ...+.+ .++.++.
T Consensus 32 pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~--~~~i~~-~~~~~g~ 75 (249)
T PRK04328 32 PGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH--PVQVRR-NMRQFGW 75 (249)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC--HHHHHH-HHHHcCC
Confidence 6999999999987775422 467889987663 333333 3444443
No 260
>PTZ00035 Rad51 protein; Provisional
Probab=91.36 E-value=1.1 Score=46.67 Aligned_cols=48 Identities=23% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCCcHHHHHHHHHHHHhh---hc-CCCeEEEEEecCCCCHHHHHHHHHHHhCc
Q 048566 2 GGIGKTTLVKKVARQAME---DK-LFDMVVFSEVSQIPDIKRIQQEIAEKLGL 50 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~---~~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 50 (760)
+|.||||++..++-.... .+ .=..++|++....++... +.++++.++.
T Consensus 127 ~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 127 FRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred CCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 699999999988765431 11 123578999877766655 4445666544
No 261
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.31 E-value=0.7 Score=50.33 Aligned_cols=79 Identities=23% Similarity=0.279 Sum_probs=44.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDd 80 (760)
+|+||||++.+++.....++....+..++.... ..-.+.++...+.++................+.+. ..-+|++|.
T Consensus 359 tGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~--~~DLVLIDT 436 (559)
T PRK12727 359 TGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR--DYKLVLIDT 436 (559)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--cCCEEEecC
Confidence 699999999999887654333345666665432 12233334444445544433222333444445553 455788888
Q ss_pred CC
Q 048566 81 IW 82 (760)
Q Consensus 81 v~ 82 (760)
.-
T Consensus 437 aG 438 (559)
T PRK12727 437 AG 438 (559)
T ss_pred CC
Confidence 74
No 262
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.30 E-value=0.37 Score=57.25 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=51.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||++|+.+....... -...+-++++....... ..+-++.+...-.. +....+...++.....+|+||++
T Consensus 604 ~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~----~~~l~g~~~g~~g~-~~~g~l~~~v~~~p~~vlllDei 676 (852)
T TIGR03346 604 TGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS----VARLIGAPPGYVGY-EEGGQLTEAVRRKPYSVVLFDEV 676 (852)
T ss_pred CCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch----HHHhcCCCCCccCc-ccccHHHHHHHcCCCcEEEEecc
Confidence 6999999999999875421 23455666664322111 11222322211000 01123334444334459999999
Q ss_pred CCc--cccccccccccCC-----------CCCcEEEEeeCCH
Q 048566 82 WKH--LDLETVGIPFGED-----------HKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~--~~~~~l~~~~~~~-----------~~gs~IlvTTR~~ 110 (760)
+.. +.++.|...+..+ -..+-||+||...
T Consensus 677 eka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g 718 (852)
T TIGR03346 677 EKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG 718 (852)
T ss_pred ccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcc
Confidence 865 3344444333221 1234477777753
No 263
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.25 E-value=0.36 Score=57.17 Aligned_cols=84 Identities=20% Similarity=0.225 Sum_probs=41.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||++|+++++..... -...+.++++.-.. .. .+.+-+|.+...... +....+.+..+....-+|+||++
T Consensus 607 ~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~-~~---~~~~LiG~~pgy~g~-~~~g~l~~~v~~~p~~vLllDEi 679 (857)
T PRK10865 607 TGVGKTELCKALANFMFDS--DDAMVRIDMSEFME-KH---SVSRLVGAPPGYVGY-EEGGYLTEAVRRRPYSVILLDEV 679 (857)
T ss_pred CCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhh-hh---hHHHHhCCCCccccc-chhHHHHHHHHhCCCCeEEEeeh
Confidence 6999999999999765311 22345566554211 11 112223322211100 01122333333324469999999
Q ss_pred CCc--cccccccc
Q 048566 82 WKH--LDLETVGI 92 (760)
Q Consensus 82 ~~~--~~~~~l~~ 92 (760)
+.. +.++.+..
T Consensus 680 eka~~~v~~~Ll~ 692 (857)
T PRK10865 680 EKAHPDVFNILLQ 692 (857)
T ss_pred hhCCHHHHHHHHH
Confidence 854 34444433
No 264
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=91.17 E-value=1.4 Score=48.95 Aligned_cols=153 Identities=20% Similarity=0.125 Sum_probs=85.3
Q ss_pred CCCcHHHHHHHHHHHHh---hh---cCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHc----C
Q 048566 2 GGIGKTTLVKKVARQAM---ED---KLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRN----E 71 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~---~~---~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~----~ 71 (760)
+|.|||.....|.+..+ .+ ..|+ .+.|+.-+-....+++..|...+.+..... ....+.+..++.. .
T Consensus 431 PGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I~~~lsg~~~~~--~~al~~L~~~f~~~k~~~ 507 (767)
T KOG1514|consen 431 PGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKIWEALSGERVTW--DAALEALNFRFTVPKPKR 507 (767)
T ss_pred CCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHHHHhcccCcccH--HHHHHHHHHhhccCCCCC
Confidence 79999999999999643 11 2343 335666666679999999999997754432 2334455555541 3
Q ss_pred CcEEEEEECCCCccc-ccc-ccccccC-CCCCcEEEEeeCCH--HHHHHHHHHHh----CC----CcCChhhHHHHHHHH
Q 048566 72 KKILVVLDNIWKHLD-LET-VGIPFGE-DHKGCKLLLTARDR--KEAWRLFKMMV----GD----DVENRELKSTAIDVA 138 (760)
Q Consensus 72 ~r~LlVlDdv~~~~~-~~~-l~~~~~~-~~~gs~IlvTTR~~--~~a~~Lf~~~a----~~----~~~~~~~~~~~~~i~ 138 (760)
+..+|++|+++..-. -++ +-..|.| ..++||++|.+=.- +--.++|..+. |. ..+.. -.++-+-|.
T Consensus 508 ~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYt-h~qLq~Ii~ 586 (767)
T KOG1514|consen 508 STTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYT-HEQLQEIIS 586 (767)
T ss_pred CCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCC-HHHHHHHHH
Confidence 678999999865411 011 1112232 45677766554332 33344554222 11 11111 122333334
Q ss_pred HHhCCc----chHHHHHHHHHccC
Q 048566 139 RACGGL----PIALTTVAMALRSK 158 (760)
Q Consensus 139 ~~c~gl----PLai~~~~~~l~~~ 158 (760)
....|+ +-|+..+|+.++..
T Consensus 587 ~RL~~~~~f~~~aielvarkVAav 610 (767)
T KOG1514|consen 587 ARLKGLDAFENKAIELVARKVAAV 610 (767)
T ss_pred HhhcchhhcchhHHHHHHHHHHhc
Confidence 444554 57777777777655
No 265
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.13 E-value=0.51 Score=52.38 Aligned_cols=65 Identities=26% Similarity=0.317 Sum_probs=45.0
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHH-cCCcEEEEEE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLR-NEKKILVVLD 79 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~r~LlVlD 79 (760)
.+|+||||||.-++++.- | .|+=|++|...+...+-+.|...+..... +. .+++.=+|+|
T Consensus 334 ppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~--------------l~adsrP~CLViD 394 (877)
T KOG1969|consen 334 PPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSV--------------LDADSRPVCLVID 394 (877)
T ss_pred CCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccc--------------cccCCCcceEEEe
Confidence 379999999998887742 4 46688889887777766666655533221 11 1477788888
Q ss_pred CCCCc
Q 048566 80 NIWKH 84 (760)
Q Consensus 80 dv~~~ 84 (760)
.++..
T Consensus 395 EIDGa 399 (877)
T KOG1969|consen 395 EIDGA 399 (877)
T ss_pred cccCC
Confidence 88765
No 266
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=91.11 E-value=0.8 Score=48.94 Aligned_cols=83 Identities=24% Similarity=0.264 Sum_probs=50.0
Q ss_pred CCCcHHHHHHHHHHHHhhhc--CCC---------eEEEEEecCCCCHHHHHHHHHHHhC-cccc-------chhhHH---
Q 048566 2 GGIGKTTLVKKVARQAMEDK--LFD---------MVVFSEVSQIPDIKRIQQEIAEKLG-LELR-------EEVESS--- 59 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~--~F~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~-------~~~~~~--- 59 (760)
.|+|||||+.++.++...-+ -.| .++++-+.++....+.+.+.+..-+ .... ++....
T Consensus 150 sGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~~ 229 (466)
T TIGR01040 150 AGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERII 229 (466)
T ss_pred CCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHH
Confidence 59999999999998865100 012 5677778877666665555555443 1110 111111
Q ss_pred ---HHHHHHHHHH--cCCcEEEEEECCCCc
Q 048566 60 ---RASRIFERLR--NEKKILVVLDNIWKH 84 (760)
Q Consensus 60 ---~~~~~~~~l~--~~~r~LlVlDdv~~~ 84 (760)
.+..+-++++ +|+++|+++||+...
T Consensus 230 a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 230 TPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred HHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 1233455555 479999999999654
No 267
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=91.02 E-value=0.85 Score=49.22 Aligned_cols=83 Identities=22% Similarity=0.237 Sum_probs=50.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCC--eEEEEEecCCC-CHHHHHHHHHHHhCcccc------chh-hH------HHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFD--MVVFSEVSQIP-DIKRIQQEIAEKLGLELR------EEV-ES------SRASRIF 65 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~--~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~-~~------~~~~~~~ 65 (760)
.|+|||||+..+.++....+.+. .++++-+.++. .+.++++++...=..... .++ .. -.+..+-
T Consensus 150 ~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiA 229 (458)
T TIGR01041 150 SGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTAA 229 (458)
T ss_pred CCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 59999999999999875432222 56677776655 556666666543211110 111 11 1123455
Q ss_pred HHHH--cCCcEEEEEECCCCc
Q 048566 66 ERLR--NEKKILVVLDNIWKH 84 (760)
Q Consensus 66 ~~l~--~~~r~LlVlDdv~~~ 84 (760)
++++ +|+++|+++||+...
T Consensus 230 Eyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 230 EYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHccCCcEEEEEcChhHH
Confidence 5565 489999999999654
No 268
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.84 E-value=0.44 Score=55.67 Aligned_cols=73 Identities=21% Similarity=0.218 Sum_probs=40.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||+||+.++... +...+.+++++..... .+.+-++.+..... .+....+.+.++....-+|+||++
T Consensus 493 ~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~----~~~~lig~~~gyvg-~~~~~~l~~~~~~~p~~VvllDEi 562 (731)
T TIGR02639 493 TGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH----TVSRLIGAPPGYVG-FEQGGLLTEAVRKHPHCVLLLDEI 562 (731)
T ss_pred CCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc----cHHHHhcCCCCCcc-cchhhHHHHHHHhCCCeEEEEech
Confidence 6999999999999865 2345667766532211 12222332221100 011223444444435569999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 563 eka 565 (731)
T TIGR02639 563 EKA 565 (731)
T ss_pred hhc
Confidence 865
No 269
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=90.81 E-value=0.17 Score=43.94 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
.+|+||||+|+++++..
T Consensus 7 ~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 7 PPGSGKSTLAKELAERL 23 (121)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999875
No 270
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.80 E-value=1 Score=41.92 Aligned_cols=48 Identities=21% Similarity=0.273 Sum_probs=28.5
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCc
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGL 50 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~ 50 (760)
.+|.||||+++.++...... . ..++.++..... ...+.+...++..+.
T Consensus 8 ~~G~GKTt~~~~la~~~~~~-g-~~v~~i~~D~~~~~~~~~l~~~~~~~~~ 56 (173)
T cd03115 8 LQGVGKTTTAAKLALYLKKK-G-KKVLLVAADTYRPAAIEQLRVLGEQVGV 56 (173)
T ss_pred CCCCCHHHHHHHHHHHHHHC-C-CcEEEEEcCCCChHHHHHHHHhcccCCe
Confidence 48999999999999876633 2 245556654322 233334444454443
No 271
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.61 E-value=1.4 Score=41.71 Aligned_cols=38 Identities=13% Similarity=0.220 Sum_probs=26.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQE 43 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 43 (760)
+|+|||++|.+++...... =..++|++..+ +...+.+.
T Consensus 8 ~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 8 PGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 7999999999998876522 25688887654 34444443
No 272
>PTZ00185 ATPase alpha subunit; Provisional
Probab=90.60 E-value=1.3 Score=47.78 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=47.0
Q ss_pred CCCcHHHHH-HHHHHHHhh-----hcCCCeEEEEEecCCCCHHHHHHHHHHHhC-cccc------chh-hHH------HH
Q 048566 2 GGIGKTTLV-KKVARQAME-----DKLFDMVVFSEVSQIPDIKRIQQEIAEKLG-LELR------EEV-ESS------RA 61 (760)
Q Consensus 2 gGiGKTtLA-~~~~~~~~~-----~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~------~~~-~~~------~~ 61 (760)
.|+|||+|| -.+.|+..+ ++.-+.++++-+.++.....-+.+.++.-+ .+.. .++ ... ..
T Consensus 198 ~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~Apy~a 277 (574)
T PTZ00185 198 RQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYSG 277 (574)
T ss_pred CCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHHHHHHHH
Confidence 489999998 666777532 123456888888887644433444444433 1110 111 111 11
Q ss_pred HHHHHHHH-cCCcEEEEEECCCCc
Q 048566 62 SRIFERLR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 62 ~~~~~~l~-~~~r~LlVlDdv~~~ 84 (760)
-.+-++++ +|+.+|+|+||+...
T Consensus 278 ~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 278 VTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHcCCCEEEEEcCchHH
Confidence 22333332 379999999999764
No 273
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.53 E-value=1.4 Score=43.37 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=27.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEI 44 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 44 (760)
+|+|||++|.++...... .=..++|++..+. ...+.+++
T Consensus 34 ~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~~--~~~~~~~~ 72 (234)
T PRK06067 34 HGTGKSVLSQQFVYGALK--QGKKVYVITTENT--SKSYLKQM 72 (234)
T ss_pred CCCChHHHHHHHHHHHHh--CCCEEEEEEcCCC--HHHHHHHH
Confidence 699999999999766542 2357889988653 44555553
No 274
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=90.50 E-value=3.4 Score=39.41 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=30.7
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQE 43 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 43 (760)
|+|+||||=+..+++..--..+=+++.=.++|....+.-+-.+
T Consensus 56 pPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~ 98 (333)
T KOG0991|consen 56 PPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNK 98 (333)
T ss_pred CCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHH
Confidence 6899999999999988764444467777777776655443333
No 275
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.31 E-value=0.18 Score=26.47 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=5.9
Q ss_pred CceEEEecCCCCCCC
Q 048566 352 KLRVLDFTRMQFSSF 366 (760)
Q Consensus 352 ~Lr~L~l~~~~~~~l 366 (760)
+|+.|++++|.++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 345555555554443
No 276
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=90.05 E-value=1.4 Score=47.35 Aligned_cols=82 Identities=20% Similarity=0.355 Sum_probs=49.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccc------cchh-hHH------HHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLEL------REEV-ESS------RASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~-~~~------~~~~~~~~ 67 (760)
+|+|||||+.++.+..... +=+.++++-+.++. .+.++++++...=.... ..++ ... .+..+-++
T Consensus 152 ~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEy 230 (461)
T TIGR01039 152 AGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAEY 230 (461)
T ss_pred CCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5999999999999876532 22467778777654 55677777654311111 0111 111 12334445
Q ss_pred HH--cCCcEEEEEECCCCc
Q 048566 68 LR--NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~--~~~r~LlVlDdv~~~ 84 (760)
++ +|+++|+++||+...
T Consensus 231 frd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 231 FRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHhcCCeeEEEecchhHH
Confidence 53 379999999999754
No 277
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=89.96 E-value=3.6 Score=42.82 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=33.3
Q ss_pred HHHHHHHHHHH----cCCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 59 SRASRIFERLR----NEKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 59 ~~~~~~~~~l~----~~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+.+..+.+.+. .+++=++|+|+++... ..+.+...+..-..+..+|.+|.+.
T Consensus 91 dqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (334)
T PRK07993 91 DAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREP 148 (334)
T ss_pred HHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 33444555443 2567789999998763 4566666666555667777777765
No 278
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=89.90 E-value=0.97 Score=51.96 Aligned_cols=75 Identities=20% Similarity=0.221 Sum_probs=49.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccc------hhhHHHHHHHHHHHHcCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELRE------EVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~l~~~~r~L 75 (760)
+|+||||||.+++...... -..++|++..+.++. ..+++++.+... ...+.....+.+...+++--|
T Consensus 69 ~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~L 141 (790)
T PRK09519 69 ESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDI 141 (790)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeE
Confidence 6999999998877665422 356899998877663 367777765431 122333344444445556779
Q ss_pred EEEECCCC
Q 048566 76 VVLDNIWK 83 (760)
Q Consensus 76 lVlDdv~~ 83 (760)
||+|-+..
T Consensus 142 VVIDSI~a 149 (790)
T PRK09519 142 VVIDSVAA 149 (790)
T ss_pred EEEcchhh
Confidence 99999863
No 279
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=89.81 E-value=1.2 Score=48.20 Aligned_cols=82 Identities=23% Similarity=0.250 Sum_probs=50.6
Q ss_pred CCCcHHHHHHHHHHHHhhhc---CCCeEEEEEecCCC-CHHHHHHHHHHHhCcccc------c-hhhH------HHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDK---LFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELR------E-EVES------SRASRI 64 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~---~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~-~~~~------~~~~~~ 64 (760)
.|+|||||+..++++...++ .| .++++-+.++. .+.++++++...=..... . +... -.+..+
T Consensus 152 ~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~ti 230 (460)
T PRK04196 152 SGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTA 230 (460)
T ss_pred CCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 59999999999998865321 11 56777777665 556677776653211110 1 1111 122345
Q ss_pred HHHHH--cCCcEEEEEECCCCc
Q 048566 65 FERLR--NEKKILVVLDNIWKH 84 (760)
Q Consensus 65 ~~~l~--~~~r~LlVlDdv~~~ 84 (760)
-++++ +|+++|+++||+...
T Consensus 231 AEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 231 AEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHhcCCcEEEEEcChHHH
Confidence 55655 479999999998654
No 280
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=89.69 E-value=3.3 Score=43.18 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=27.9
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++=++|+|+++... ..+.+...+.....++.+|++|.+.
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~ 150 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENK 150 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCCh
Confidence 455678999987653 3556666666656677788888776
No 281
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.63 E-value=0.74 Score=51.45 Aligned_cols=63 Identities=24% Similarity=0.323 Sum_probs=44.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||-+||+|+.+-... |++|... +++..-.- ..++.+.+++++-++.+++.|.||.+
T Consensus 714 PGTGKTLlAKAVATEcsL~-------FlSVKGP----ELLNMYVG---------qSE~NVR~VFerAR~A~PCVIFFDEL 773 (953)
T KOG0736|consen 714 PGTGKTLLAKAVATECSLN-------FLSVKGP----ELLNMYVG---------QSEENVREVFERARSAAPCVIFFDEL 773 (953)
T ss_pred CCCchHHHHHHHHhhceee-------EEeecCH----HHHHHHhc---------chHHHHHHHHHHhhccCCeEEEeccc
Confidence 7999999999999875432 5666543 22222111 13456778888888889999999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 774 DSl 776 (953)
T KOG0736|consen 774 DSL 776 (953)
T ss_pred ccc
Confidence 765
No 282
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.51 E-value=1.3 Score=47.06 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=40.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDd 80 (760)
+|+||||+|.+++.....+..+ .+..++.... ......++..++.++.+.... .....+.+.+.....-+||+|-
T Consensus 232 tGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~---~~~~~l~~~l~~~~~D~VLIDT 307 (432)
T PRK12724 232 TGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV---KDIKKFKETLARDGSELILIDT 307 (432)
T ss_pred CCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeeh---HHHHHHHHHHHhCCCCEEEEeC
Confidence 7999999999999765322222 4555554432 223344455555655544321 1123344444332334588884
No 283
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=89.49 E-value=0.44 Score=47.91 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=25.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP 35 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~ 35 (760)
||+||||+|.+++......+ -..|+-||.....
T Consensus 12 GGvGKTT~a~nLa~~La~~~-~~kVLliDlDpQ~ 44 (259)
T COG1192 12 GGVGKTTTAVNLAAALAKRG-GKKVLLIDLDPQG 44 (259)
T ss_pred CCccHHHHHHHHHHHHHHhc-CCcEEEEeCCCcc
Confidence 99999999999999987321 2578899886543
No 284
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.49 E-value=1.8 Score=43.32 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
+|+||||+|.+++.....+ =..+++++...
T Consensus 45 pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 45 SDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 7999999999987775422 34688888864
No 285
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.45 E-value=0.56 Score=55.54 Aligned_cols=76 Identities=21% Similarity=0.268 Sum_probs=39.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||+||+.+++..-.. -...+-+++++-.+... +.+-++.+..... .+....+.+.++....-+|+||++
T Consensus 548 ~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~----~~~l~g~~~gyvg-~~~~~~l~~~~~~~p~~VvllDei 620 (821)
T CHL00095 548 TGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHT----VSKLIGSPPGYVG-YNEGGQLTEAVRKKPYTVVLFDEI 620 (821)
T ss_pred CCCcHHHHHHHHHHHhcCC--ccceEEEEchhcccccc----HHHhcCCCCcccC-cCccchHHHHHHhCCCeEEEECCh
Confidence 6999999999999875311 13345556554322111 1122232211100 011123445555434468999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 621 eka 623 (821)
T CHL00095 621 EKA 623 (821)
T ss_pred hhC
Confidence 865
No 286
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=89.45 E-value=1.5 Score=47.03 Aligned_cols=79 Identities=24% Similarity=0.350 Sum_probs=45.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCcccc-------chhhHH------HHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELR-------EEVESS------RASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-------~~~~~~------~~~~~~~~ 67 (760)
.|+|||||++.+++... .+.++++-+.++. .+.++.++.+..-+.... ++.... .+-.+-++
T Consensus 167 sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAEy 242 (442)
T PRK08927 167 SGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAEY 242 (442)
T ss_pred CCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999997754 3455566676655 344555555443221110 111111 12233444
Q ss_pred HH-cCCcEEEEEECCCCc
Q 048566 68 LR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~-~~~r~LlVlDdv~~~ 84 (760)
++ +|+++|+++||+...
T Consensus 243 frd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 243 FRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHCCCcEEEEEeCcHHH
Confidence 43 479999999999654
No 287
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.42 E-value=1.5 Score=48.53 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=44.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccc----------------hhhHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELRE----------------EVESSRASRIF 65 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----------------~~~~~~~~~~~ 65 (760)
+|+||||||.+++.....+ -..+++++..+ +...+.+.+ +.++.+... ...++.+..+.
T Consensus 272 ~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~ 346 (484)
T TIGR02655 272 TGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIK 346 (484)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccCChHHHHHHHH
Confidence 7999999999999887533 35677776655 444555553 455543211 11133445555
Q ss_pred HHHHcCCcEEEEEECC
Q 048566 66 ERLRNEKKILVVLDNI 81 (760)
Q Consensus 66 ~~l~~~~r~LlVlDdv 81 (760)
+.....+.-.||+|.+
T Consensus 347 ~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 347 SEIADFKPARIAIDSL 362 (484)
T ss_pred HHHHHcCCCEEEEcCH
Confidence 5554334456666665
No 288
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.37 E-value=0.47 Score=56.01 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||.+|++++..... ..+..+=+++++.... ..+.+-+|.+...-.. +....+.+.+++...-+|+||++
T Consensus 605 ~GvGKT~lA~~La~~l~~--~~~~~~~~dmse~~~~----~~~~~l~g~~~gyvg~-~~~g~L~~~v~~~p~svvllDEi 677 (852)
T TIGR03345 605 SGVGKTETALALAELLYG--GEQNLITINMSEFQEA----HTVSRLKGSPPGYVGY-GEGGVLTEAVRRKPYSVVLLDEV 677 (852)
T ss_pred CCCCHHHHHHHHHHHHhC--CCcceEEEeHHHhhhh----hhhccccCCCCCcccc-cccchHHHHHHhCCCcEEEEech
Confidence 699999999999887532 1223333444332110 1112223332211100 01112334444446679999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 678 eka 680 (852)
T TIGR03345 678 EKA 680 (852)
T ss_pred hhc
Confidence 865
No 289
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=89.29 E-value=1.5 Score=43.85 Aligned_cols=78 Identities=22% Similarity=0.197 Sum_probs=44.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHH-hCc---ccc--chhhHHHHHHHHHHHHcCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEK-LGL---ELR--EEVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~-l~~---~~~--~~~~~~~~~~~~~~l~~~~r~L 75 (760)
.|.||||+|.+++-..... -..++|||....++...+.+ ++.. +.. ..+ .+.....++.+.....+ +--|
T Consensus 69 ~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~-~i~L 144 (279)
T COG0468 69 ESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAE-KIDL 144 (279)
T ss_pred CCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHHHhccC-CCCE
Confidence 5899999998888776532 44899999988887765433 3333 211 111 11111122222222221 3679
Q ss_pred EEEECCCC
Q 048566 76 VVLDNIWK 83 (760)
Q Consensus 76 lVlDdv~~ 83 (760)
||+|.|-.
T Consensus 145 vVVDSvaa 152 (279)
T COG0468 145 LVVDSVAA 152 (279)
T ss_pred EEEecCcc
Confidence 99998853
No 290
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=89.23 E-value=1.4 Score=47.77 Aligned_cols=78 Identities=17% Similarity=0.325 Sum_probs=46.8
Q ss_pred CCcHHHHH-HHHHHHHhhhcCCCe-EEEEEecCCC-CHHHHHHHHHHHhCcccc------chh-hHH------HHHHHHH
Q 048566 3 GIGKTTLV-KKVARQAMEDKLFDM-VVFSEVSQIP-DIKRIQQEIAEKLGLELR------EEV-ESS------RASRIFE 66 (760)
Q Consensus 3 GiGKTtLA-~~~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~-~~~------~~~~~~~ 66 (760)
|+|||||| ..+.++.. -+. ++++-+.++. .+.++.+.+...=..+.. .++ ... ....+-+
T Consensus 172 g~GKT~Lal~~I~~q~~----~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~aiAE 247 (497)
T TIGR03324 172 QTGKTAIAIDTILNQKG----RNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSIGE 247 (497)
T ss_pred CCCHHHHHHHHHHHhcC----CCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 99999997 47777642 454 6788887765 556666666654211110 111 111 1223344
Q ss_pred HHH-cCCcEEEEEECCCCc
Q 048566 67 RLR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 67 ~l~-~~~r~LlVlDdv~~~ 84 (760)
+++ +|+++|||+||+...
T Consensus 248 yfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 248 HFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHhCCCCEEEEEcChhHH
Confidence 443 479999999999765
No 291
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=89.18 E-value=1.9 Score=41.77 Aligned_cols=63 Identities=27% Similarity=0.388 Sum_probs=38.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||-+|+++++..++- | +.+ +..+-|-+.+|. -...+.++.++-++--++.+.+|..
T Consensus 160 pGTGKTm~Akalane~kvp--~-----l~v-------kat~liGehVGd------gar~Ihely~rA~~~aPcivFiDE~ 219 (368)
T COG1223 160 PGTGKTMMAKALANEAKVP--L-----LLV-------KATELIGEHVGD------GARRIHELYERARKAAPCIVFIDEL 219 (368)
T ss_pred CCccHHHHHHHHhcccCCc--e-----EEe-------chHHHHHHHhhh------HHHHHHHHHHHHHhcCCeEEEehhh
Confidence 6999999999999987643 2 222 112222233321 1233455555555557899999988
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+-.
T Consensus 220 DAi 222 (368)
T COG1223 220 DAI 222 (368)
T ss_pred hhh
Confidence 654
No 292
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.15 E-value=0.81 Score=49.80 Aligned_cols=77 Identities=30% Similarity=0.378 Sum_probs=43.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccch--hhHHHHHHHHHHHHcCCcEEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREE--VESSRASRIFERLRNEKKILVVLD 79 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~~r~LlVlD 79 (760)
+|+|||||+.+++.....+ -..++|++..+. ...+. .-++.++.+...- ..+...+.+.+.+.+.+.-+||+|
T Consensus 89 pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~-~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVVID 163 (446)
T PRK11823 89 PGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIK-LRAERLGLPSDNLYLLAETNLEAILATIEEEKPDLVVID 163 (446)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHH-HHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEEEe
Confidence 6999999999999886522 246788886543 33332 2245555432110 001113344444444456688888
Q ss_pred CCCC
Q 048566 80 NIWK 83 (760)
Q Consensus 80 dv~~ 83 (760)
.+..
T Consensus 164 SIq~ 167 (446)
T PRK11823 164 SIQT 167 (446)
T ss_pred chhh
Confidence 8743
No 293
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=89.09 E-value=1.3 Score=41.08 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI 34 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~ 34 (760)
||+||||+|..++...... . ..+.-||....
T Consensus 9 gG~GKTt~a~~LA~~la~~-g-~~vllvD~D~q 39 (169)
T cd02037 9 GGVGKSTVAVNLALALAKL-G-YKVGLLDADIY 39 (169)
T ss_pred CcCChhHHHHHHHHHHHHc-C-CcEEEEeCCCC
Confidence 8999999999999887643 2 35666776543
No 294
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=89.01 E-value=1.4 Score=47.47 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=42.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDd 80 (760)
+|+||||++.+++........-..|..|+..... ...+.++...+.++.+................+. ..-+||+|.
T Consensus 230 tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~--~~DlVlIDt 307 (424)
T PRK05703 230 TGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR--DCDVILIDT 307 (424)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--CCCEEEEeC
Confidence 7999999999988776511223467778765422 1223333344555554432222222233333332 456788887
Q ss_pred CC
Q 048566 81 IW 82 (760)
Q Consensus 81 v~ 82 (760)
.-
T Consensus 308 ~G 309 (424)
T PRK05703 308 AG 309 (424)
T ss_pred CC
Confidence 63
No 295
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=89.00 E-value=0.29 Score=42.93 Aligned_cols=17 Identities=41% Similarity=0.642 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
..|+||||+|+++....
T Consensus 6 ~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 6 IPGSGKTTIAKELAERL 22 (129)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999885
No 296
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.91 E-value=1.6 Score=46.17 Aligned_cols=81 Identities=19% Similarity=0.165 Sum_probs=47.5
Q ss_pred CCCcHHHHHHHHHHHHhhhc--CCCeEEEEEecCCC-CHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDK--LFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVL 78 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~--~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVl 78 (760)
.|+||||.+..++....... +-..|..+++.... .....++..++.++.+.......+........+ .+.-+|++
T Consensus 183 tGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~--~~~DlVLI 260 (388)
T PRK12723 183 TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS--KDFDLVLV 260 (388)
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh--CCCCEEEE
Confidence 59999999999988765321 22356677766432 333446666777776654322222233333333 25668888
Q ss_pred ECCCCc
Q 048566 79 DNIWKH 84 (760)
Q Consensus 79 Ddv~~~ 84 (760)
|-....
T Consensus 261 DTaGr~ 266 (388)
T PRK12723 261 DTIGKS 266 (388)
T ss_pred cCCCCC
Confidence 887543
No 297
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=88.87 E-value=1.5 Score=40.56 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=40.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcC-CcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNE-KKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~-~r~LlVlDd 80 (760)
+|.|||++|.++... ....++++.-.+.++. +..+.|.+............+....+.+.+... +.-.|++|.
T Consensus 8 ~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLIDc 81 (169)
T cd00544 8 ARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLIDC 81 (169)
T ss_pred CCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEEEc
Confidence 589999999999765 1245667766665554 355554443222222222223233344444321 233799998
Q ss_pred CC
Q 048566 81 IW 82 (760)
Q Consensus 81 v~ 82 (760)
+.
T Consensus 82 lt 83 (169)
T cd00544 82 LT 83 (169)
T ss_pred Hh
Confidence 73
No 298
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.80 E-value=1.6 Score=51.59 Aligned_cols=70 Identities=16% Similarity=0.341 Sum_probs=37.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcC----CCeE-EEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHH-cCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKL----FDMV-VFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLR-NEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~----F~~~-~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~r~L 75 (760)
+|+||||+|..++++...... .+.. +.++++.-. + +.... ...+..+..+.+... .+++.+
T Consensus 217 pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~---------a---g~~~~-ge~e~~lk~ii~e~~~~~~~~I 283 (852)
T TIGR03345 217 AGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ---------A---GASVK-GEFENRLKSVIDEVKASPQPII 283 (852)
T ss_pred CCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh---------c---ccccc-hHHHHHHHHHHHHHHhcCCCeE
Confidence 799999999999998643211 1222 334333200 0 00011 112233444444443 247899
Q ss_pred EEEECCCCc
Q 048566 76 VVLDNIWKH 84 (760)
Q Consensus 76 lVlDdv~~~ 84 (760)
|++|++...
T Consensus 284 LfIDEih~l 292 (852)
T TIGR03345 284 LFIDEAHTL 292 (852)
T ss_pred EEEeChHHh
Confidence 999998654
No 299
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=88.80 E-value=2.4 Score=39.11 Aligned_cols=107 Identities=21% Similarity=0.166 Sum_probs=55.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEe---cCCCCHHHHHHHHH---HHhCcc--c---cchhh----HHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEV---SQIPDIKRIQQEIA---EKLGLE--L---REEVE----SSRASRIFE 66 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~---~~~~~~~~~~~~i~---~~l~~~--~---~~~~~----~~~~~~~~~ 66 (760)
.|.||||.|..++-+..- ..+ .|+.+-. .........++... .+.+.. . +.+.+ .+..+..++
T Consensus 14 ~GkGKtt~a~g~a~ra~~-~g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~a~~ 91 (173)
T TIGR00708 14 NGKGKTTAAFGMALRALG-HGK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAWQHAKE 91 (173)
T ss_pred CCCChHHHHHHHHHHHHH-CCC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHHHHHHH
Confidence 489999999999988763 233 3333322 21223333443320 001111 0 01111 112344455
Q ss_pred HHHcCCcEEEEEECCCCcc-----ccccccccccCCCCCcEEEEeeCCH
Q 048566 67 RLRNEKKILVVLDNIWKHL-----DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 67 ~l~~~~r~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
.+.+++--+||||.+-..- ..+++...+.....+.-||+|-|+.
T Consensus 92 ~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 92 MLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 5555566799999986432 2234444444555667899999965
No 300
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=88.74 E-value=0.6 Score=42.24 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=22.9
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEV 31 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~ 31 (760)
++|.||||||+++.+..... -..+.+++.
T Consensus 10 lsGsGKtTlA~~L~~~L~~~--g~~~~~LDg 38 (156)
T PF01583_consen 10 LSGSGKTTLARALERRLFAR--GIKVYLLDG 38 (156)
T ss_dssp STTSSHHHHHHHHHHHHHHT--TS-EEEEEH
T ss_pred CCCCCHHHHHHHHHHHHHHc--CCcEEEecC
Confidence 47999999999999998754 456777764
No 301
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=88.63 E-value=1.6 Score=47.29 Aligned_cols=82 Identities=22% Similarity=0.334 Sum_probs=49.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhC--cc-------c----c-chhhH------HH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLG--LE-------L----R-EEVES------SR 60 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~--~~-------~----~-~~~~~------~~ 60 (760)
.|+|||||+.++...... .+=+.++++-+.++. .+.++++++...-- .. . . ++... -.
T Consensus 170 ~GvGKs~L~~~~~~~~~~-~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R~~a~~~ 248 (494)
T CHL00060 170 AGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLT 248 (494)
T ss_pred CCCChhHHHHHHHHHHHH-hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHHHHHHHH
Confidence 599999999999888432 112778888887765 45677776665110 00 0 0 01111 12
Q ss_pred HHHHHHHHHc-C-CcEEEEEECCCCc
Q 048566 61 ASRIFERLRN-E-KKILVVLDNIWKH 84 (760)
Q Consensus 61 ~~~~~~~l~~-~-~r~LlVlDdv~~~ 84 (760)
+..+-++++. + +++|+++||+...
T Consensus 249 A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 249 ALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHcCCCCEEEEcccchHH
Confidence 2345555543 4 4999999999764
No 302
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.57 E-value=1.4 Score=51.03 Aligned_cols=70 Identities=21% Similarity=0.409 Sum_probs=38.8
Q ss_pred CCCcHHHHHHHHHHHHhhhc-C---CCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDK-L---FDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVV 77 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~-~---F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlV 77 (760)
+|+|||++|+.+++...... . .++.+|.. +...+ +. +.... .+.++....+.+.+...++.+|+
T Consensus 216 pGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la--G~~~~-Ge~e~rl~~l~~~l~~~~~~ILf 283 (758)
T PRK11034 216 SGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA--GTKYR-GDFEKRFKALLKQLEQDTNSILF 283 (758)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc--ccchh-hhHHHHHHHHHHHHHhcCCCEEE
Confidence 69999999999998753221 1 13444421 11111 10 11111 12334455566666545678999
Q ss_pred EECCCC
Q 048566 78 LDNIWK 83 (760)
Q Consensus 78 lDdv~~ 83 (760)
+|++..
T Consensus 284 IDEIh~ 289 (758)
T PRK11034 284 IDEIHT 289 (758)
T ss_pred eccHHH
Confidence 999974
No 303
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=88.53 E-value=1.3 Score=48.20 Aligned_cols=77 Identities=26% Similarity=0.333 Sum_probs=42.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccch--hhHHHHHHHHHHHHcCCcEEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREE--VESSRASRIFERLRNEKKILVVLD 79 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~~~r~LlVlD 79 (760)
+|+|||||+.+++...... -..++|++..+. ...+. .-++.++.....- ..+...+.+.+.+.+.+.-++|+|
T Consensus 103 pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs--~~qi~-~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~vVID 177 (454)
T TIGR00416 103 PGIGKSTLLLQVACQLAKN--QMKVLYVSGEES--LQQIK-MRAIRLGLPEPNLYVLSETNWEQICANIEEENPQACVID 177 (454)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCcEEEEECcCC--HHHHH-HHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcEEEEe
Confidence 6999999999998876532 235888876543 33322 2234444332210 001122344444443356678999
Q ss_pred CCCC
Q 048566 80 NIWK 83 (760)
Q Consensus 80 dv~~ 83 (760)
.+..
T Consensus 178 SIq~ 181 (454)
T TIGR00416 178 SIQT 181 (454)
T ss_pred cchh
Confidence 8854
No 304
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.35 E-value=0.037 Score=52.10 Aligned_cols=83 Identities=12% Similarity=0.095 Sum_probs=62.0
Q ss_pred cCCCCceEEEecCCCCCCChhhhhhhccCCeeEecCCCCCC-ccccccccccceeecccCcccccchhhhcCCCCCEEec
Q 048566 348 IGMKKLRVLDFTRMQFSSFPSSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDL 426 (760)
Q Consensus 348 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l 426 (760)
..++...+||++.+.+..+-..++.++.|..|+++.+.+.. |.+++.+..++.+++..|..+..|.+.+.++++++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 45666777888877777777777777777777777777766 67777777777777777777777877777777777777
Q ss_pred cccc
Q 048566 427 TNCF 430 (760)
Q Consensus 427 ~~~~ 430 (760)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 6653
No 305
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.31 E-value=2.6 Score=44.11 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=48.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHc-CCcEEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIKRIQQEIAEKLGLELREEVESSRASRIFERLRN-EKKILVVLD 79 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~~r~LlVlD 79 (760)
.|+||||++..++.....+ -..+.+|++... ....+-++..++.++.+.........+....+.+.. +..-+|++|
T Consensus 215 tGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLID 292 (407)
T PRK12726 215 TGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILID 292 (407)
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 5999999999999876433 245778887643 234556666777776654322222333444444431 245677778
Q ss_pred CCCC
Q 048566 80 NIWK 83 (760)
Q Consensus 80 dv~~ 83 (760)
-.-.
T Consensus 293 TAGr 296 (407)
T PRK12726 293 TVGR 296 (407)
T ss_pred CCCC
Confidence 7754
No 306
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=88.30 E-value=1.7 Score=43.35 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=43.2
Q ss_pred CCCcHHHHH-HHHHHHHhhhcCCCeE-EEEEecCCC-CHHHHHHHHHHHhCccc------c-chhhHH------HHHHHH
Q 048566 2 GGIGKTTLV-KKVARQAMEDKLFDMV-VFSEVSQIP-DIKRIQQEIAEKLGLEL------R-EEVESS------RASRIF 65 (760)
Q Consensus 2 gGiGKTtLA-~~~~~~~~~~~~F~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~------~-~~~~~~------~~~~~~ 65 (760)
.|+|||+|| ..+.++. .-+.+ +++-+.++. .+.++.+++.+.=..+. . ++.... .+-.+-
T Consensus 78 ~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiA 153 (274)
T cd01132 78 RQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMG 153 (274)
T ss_pred CCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHH
Confidence 479999996 5565543 23444 666677665 45566666654321110 0 111111 112233
Q ss_pred HHHH-cCCcEEEEEECCCCc
Q 048566 66 ERLR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 66 ~~l~-~~~r~LlVlDdv~~~ 84 (760)
++++ +|+.+|||+||+...
T Consensus 154 E~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 154 EYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHCCCCEEEEEcChHHH
Confidence 3333 379999999999654
No 307
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=88.26 E-value=2.3 Score=45.76 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=44.5
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccccc----hhhHHHHHHHHHHHHcCCcE-
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELRE----EVESSRASRIFERLRNEKKI- 74 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~~l~~~~r~- 74 (760)
.+|+||||.|..++.....+.. ..+.-|++.... ...+.++...+..+.+... .+..+......+.... +.+
T Consensus 107 ~~GsGKTTtaakLA~~l~~~~g-~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~-~~~D 184 (428)
T TIGR00959 107 LQGSGKTTTCGKLAYYLKKKQG-KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE-NGFD 184 (428)
T ss_pred CCCCcHHHHHHHHHHHHHHhCC-CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh-cCCC
Confidence 3799999999999988542222 245666655322 2344455556666554321 2223333344444443 344
Q ss_pred EEEEECCC
Q 048566 75 LVVLDNIW 82 (760)
Q Consensus 75 LlVlDdv~ 82 (760)
+||+|-.-
T Consensus 185 vVIIDTaG 192 (428)
T TIGR00959 185 VVIVDTAG 192 (428)
T ss_pred EEEEeCCC
Confidence 78888765
No 308
>PHA02518 ParA-like protein; Provisional
Probab=88.24 E-value=0.84 Score=44.16 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=27.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRI 40 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 40 (760)
||+||||+|.+++.....+ =..++-||.....+....
T Consensus 10 GGvGKTT~a~~la~~la~~--g~~vlliD~D~q~~~~~~ 46 (211)
T PHA02518 10 GGAGKTTVATNLASWLHAD--GHKVLLVDLDPQGSSTDW 46 (211)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEeCCCCCChHHH
Confidence 8999999999998876632 236788888766655543
No 309
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=88.22 E-value=0.48 Score=53.91 Aligned_cols=83 Identities=20% Similarity=0.248 Sum_probs=44.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHH--HHHHHhCccccchhhHHHHHHHHHHHHcCCcE-EEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQ--EIAEKLGLELREEVESSRASRIFERLRNEKKI-LVVL 78 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~--~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~-LlVl 78 (760)
.|||||.||++++...-.. =+..+-+++|+ ..+ .+.+-+|.+...-.-++ -..+-+..++ ++| +|.|
T Consensus 530 TGVGKTELAkaLA~~Lfg~--e~aliR~DMSE------y~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr-~PySViLl 599 (786)
T COG0542 530 TGVGKTELAKALAEALFGD--EQALIRIDMSE------YMEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRR-KPYSVILL 599 (786)
T ss_pred CcccHHHHHHHHHHHhcCC--CccceeechHH------HHHHHHHHHHhCCCCCCceecc-ccchhHhhhc-CCCeEEEe
Confidence 5999999999999876211 03455555554 222 23344454433211111 2233444443 666 8889
Q ss_pred ECCCCc--cccccccccc
Q 048566 79 DNIWKH--LDLETVGIPF 94 (760)
Q Consensus 79 Ddv~~~--~~~~~l~~~~ 94 (760)
|.|... +..+-|...+
T Consensus 600 DEIEKAHpdV~nilLQVl 617 (786)
T COG0542 600 DEIEKAHPDVFNLLLQVL 617 (786)
T ss_pred chhhhcCHHHHHHHHHHh
Confidence 999865 3344444333
No 310
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=88.11 E-value=1.7 Score=43.34 Aligned_cols=18 Identities=33% Similarity=0.665 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
++|+||||+|+++.....
T Consensus 7 ~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 7 LPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 589999999999998875
No 311
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=88.06 E-value=0.83 Score=43.67 Aligned_cols=44 Identities=25% Similarity=0.395 Sum_probs=31.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcccc
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR 53 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 53 (760)
||+||||+|..++.....++. ..++=||....+++. +++|.+.+
T Consensus 9 GG~GKTtiaalll~~l~~~~~-~~VLvVDaDpd~nL~-------~~LGve~~ 52 (255)
T COG3640 9 GGVGKTTIAALLLKRLLSKGG-YNVLVVDADPDSNLP-------EALGVEEP 52 (255)
T ss_pred CCccHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCChH-------HhcCCCCC
Confidence 899999999997777654443 356678887776644 56666554
No 312
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=88.05 E-value=1.3 Score=47.27 Aligned_cols=79 Identities=23% Similarity=0.361 Sum_probs=46.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCcccc-------chhhHH------HHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELR-------EEVESS------RASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-------~~~~~~------~~~~~~~~ 67 (760)
.|+|||||++.+++... .+.++.+-+.++. .+.++.++++..-+.... ++.... .+..+-++
T Consensus 171 sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEy 246 (444)
T PRK08972 171 SGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEY 246 (444)
T ss_pred CCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999986432 3566667777665 445566665443211110 111111 12223334
Q ss_pred HH-cCCcEEEEEECCCCc
Q 048566 68 LR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~-~~~r~LlVlDdv~~~ 84 (760)
++ +|+++|+++||+...
T Consensus 247 frd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 247 FRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHcCCCEEEEEcChHHH
Confidence 42 379999999999654
No 313
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=87.93 E-value=2.4 Score=42.97 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=29.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEK 47 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 47 (760)
+|+||||+|.+++...... +=..++|+++.. +...+.+.+...
T Consensus 39 ~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 39 TGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 6999999999998876532 124688988765 344555555443
No 314
>PRK08149 ATP synthase SpaL; Validated
Probab=87.92 E-value=1.4 Score=47.14 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=45.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccc-----c--chhhH------HHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLEL-----R--EEVES------SRASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-----~--~~~~~------~~~~~~~~~ 67 (760)
.|+|||||++.+++... -+.++...+.... ++.++.++..+...... . ++... ..+..+-++
T Consensus 160 sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE~ 235 (428)
T PRK08149 160 AGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAEY 235 (428)
T ss_pred CCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHHH
Confidence 59999999999987543 3444445555443 55566666665432110 0 11111 112233334
Q ss_pred HH-cCCcEEEEEECCCCc
Q 048566 68 LR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~-~~~r~LlVlDdv~~~ 84 (760)
++ +|+++|+++||+...
T Consensus 236 fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 236 FRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHcCCCEEEEccchHHH
Confidence 43 379999999999654
No 315
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=87.92 E-value=0.35 Score=42.44 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=19.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI 34 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~ 34 (760)
+|+||||+|.+++....- -|++++.-
T Consensus 16 PG~GKstl~~~lae~~~~-------~~i~isd~ 41 (176)
T KOG3347|consen 16 PGTGKSTLAERLAEKTGL-------EYIEISDL 41 (176)
T ss_pred CCCCchhHHHHHHHHhCC-------ceEehhhH
Confidence 799999999999955432 27777753
No 316
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.84 E-value=2.7 Score=44.19 Aligned_cols=80 Identities=21% Similarity=0.286 Sum_probs=42.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcC-CcEEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELREEVESSRASRIFERLRNE-KKILVVLD 79 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~-~r~LlVlD 79 (760)
+|+||||++..++.....+ . ..+..++..... ...+-++..++.++.+..............+.+... +.=+|++|
T Consensus 250 tGvGKTTTiaKLA~~L~~~-G-kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLID 327 (436)
T PRK11889 250 TGVGKTTTLAKMAWQFHGK-K-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILID 327 (436)
T ss_pred CCCcHHHHHHHHHHHHHHc-C-CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 7999999999999876532 2 245667764422 233334444555555543222222233333444321 23466777
Q ss_pred CCCC
Q 048566 80 NIWK 83 (760)
Q Consensus 80 dv~~ 83 (760)
-.-.
T Consensus 328 TaGR 331 (436)
T PRK11889 328 TAGK 331 (436)
T ss_pred Cccc
Confidence 6643
No 317
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=87.80 E-value=0.75 Score=41.15 Aligned_cols=40 Identities=28% Similarity=0.420 Sum_probs=29.7
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcccc
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR 53 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 53 (760)
.+|.||||+|+.++++..-+ .|+. -.++++|++..+.+..
T Consensus 8 ~pGsG~TTva~~lAe~~gl~-------~vsa------G~iFR~~A~e~gmsl~ 47 (179)
T COG1102 8 LPGSGKTTVARELAEHLGLK-------LVSA------GTIFREMARERGMSLE 47 (179)
T ss_pred CCCCChhHHHHHHHHHhCCc-------eeec------cHHHHHHHHHcCCCHH
Confidence 37999999999999987533 2222 2678889988887654
No 318
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=87.79 E-value=1.1 Score=44.08 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=24.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQE 43 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 43 (760)
+|.|||++|.++......+ .=+.++|++..+. ..++.++
T Consensus 28 ~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~--~~~l~~~ 66 (226)
T PF06745_consen 28 PGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEP--PEELIEN 66 (226)
T ss_dssp TTSSHHHHHHHHHHHHHHH-HT--EEEEESSS---HHHHHHH
T ss_pred CCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCC--HHHHHHH
Confidence 7999999999877665422 1246888887654 3444444
No 319
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=87.77 E-value=0.9 Score=43.74 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=29.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRI 40 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~ 40 (760)
||.||||++..++.....+ =..|.-+|...+..+.+-
T Consensus 11 GGaGKTT~~~~LAs~la~~--G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAAR--GARVALIDADPNQPLAKW 47 (231)
T ss_pred CCCcHHHHHHHHHHHHHHC--CCeEEEEeCCCCCcHHHH
Confidence 9999999999999998743 457888998877666644
No 320
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.70 E-value=2.4 Score=46.85 Aligned_cols=18 Identities=44% Similarity=0.462 Sum_probs=16.4
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 048566 2 GGIGKTTLVKKVARQAME 19 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~ 19 (760)
||+|||++|+++++....
T Consensus 477 PGC~KT~lAkalAne~~~ 494 (693)
T KOG0730|consen 477 PGCGKTLLAKALANEAGM 494 (693)
T ss_pred CCcchHHHHHHHhhhhcC
Confidence 799999999999999763
No 321
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=87.68 E-value=0.82 Score=43.50 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=26.4
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHH
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKR 39 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~ 39 (760)
-||+||||+|..++.....+ -..|+-++.....+...
T Consensus 7 kGG~GKTt~a~~la~~la~~--g~~VlliD~D~~~~~~~ 43 (195)
T PF01656_consen 7 KGGVGKTTIAANLAQALARK--GKKVLLIDLDPQAPNLS 43 (195)
T ss_dssp STTSSHHHHHHHHHHHHHHT--TS-EEEEEESTTSHHHH
T ss_pred CCCccHHHHHHHHHhccccc--cccccccccCcccccHH
Confidence 39999999999999988743 34577778765444333
No 322
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=87.56 E-value=6.1 Score=40.03 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=29.6
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++=++|+||++.. +..+.+...+.....+..+|++|.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~ 144 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDE 144 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 46678999999876 35677777776666667788888776
No 323
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=87.51 E-value=2.8 Score=43.20 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=28.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEI 44 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i 44 (760)
.|+|||+|+++++++.. -+.++++-+.++. .+.++++++
T Consensus 166 ~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 166 FGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHH
Confidence 59999999999998743 3578888887765 444555554
No 324
>PRK10867 signal recognition particle protein; Provisional
Probab=87.40 E-value=2.8 Score=45.11 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=42.2
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccccc----hhhHHHHHHHHHHHHcCCcEE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELRE----EVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~~l~~~~r~L 75 (760)
.+|+||||.|.+++.....+. -..++.|++.... ...+-++..++..+.+.-. .+..+......+.......-+
T Consensus 108 ~~GsGKTTtaakLA~~l~~~~-G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~~~Dv 186 (433)
T PRK10867 108 LQGAGKTTTAGKLAKYLKKKK-KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKENGYDV 186 (433)
T ss_pred CCCCcHHHHHHHHHHHHHHhc-CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 379999999999988765331 2345666654322 2234445556666544221 122333333333333222336
Q ss_pred EEEECCC
Q 048566 76 VVLDNIW 82 (760)
Q Consensus 76 lVlDdv~ 82 (760)
||+|-.-
T Consensus 187 VIIDTaG 193 (433)
T PRK10867 187 VIVDTAG 193 (433)
T ss_pred EEEeCCC
Confidence 6667654
No 325
>PRK12678 transcription termination factor Rho; Provisional
Probab=87.35 E-value=2 Score=47.17 Aligned_cols=79 Identities=20% Similarity=0.224 Sum_probs=43.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEE-EEEecCCCCHHHHHHHHHHHhCccc-----cc-----hhhHHHHHHHHHHHH-
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVV-FSEVSQIPDIKRIQQEIAEKLGLEL-----RE-----EVESSRASRIFERLR- 69 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~-wv~~~~~~~~~~~~~~i~~~l~~~~-----~~-----~~~~~~~~~~~~~l~- 69 (760)
+|+|||||++.+++.... .+-++.+ .+-|.+...... ++-+.+.... +. ......+-.+-+++.
T Consensus 425 p~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVt---dm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~fre 500 (672)
T PRK12678 425 PKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVT---DMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVE 500 (672)
T ss_pred CCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHH---HHHHhccceEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999998753 3345443 444555543221 1233331111 10 011122223344443
Q ss_pred cCCcEEEEEECCCCc
Q 048566 70 NEKKILVVLDNIWKH 84 (760)
Q Consensus 70 ~~~r~LlVlDdv~~~ 84 (760)
+|+.+||++|++...
T Consensus 501 ~G~dVlillDSlTR~ 515 (672)
T PRK12678 501 LGKDVVVLLDSITRL 515 (672)
T ss_pred cCCCEEEEEeCchHH
Confidence 489999999998654
No 326
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=87.07 E-value=1.1 Score=41.79 Aligned_cols=17 Identities=47% Similarity=0.632 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|.||||+|+.+.+...
T Consensus 9 pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 9 PGAGKSTLAKKLAKKLG 25 (178)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 79999999999999843
No 327
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=87.04 E-value=0.25 Score=42.59 Aligned_cols=17 Identities=53% Similarity=0.671 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+||||+|++++....
T Consensus 8 PG~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 8 PGVGKTTLAKALARSLG 24 (131)
T ss_dssp --HHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHcC
Confidence 79999999999998865
No 328
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=87.03 E-value=35 Score=34.09 Aligned_cols=35 Identities=20% Similarity=0.103 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCCcCChhhHHHHHHHHHHhCCcch
Q 048566 111 KEAWRLFKMMVGDDVENRELKSTAIDVARACGGLPI 146 (760)
Q Consensus 111 ~~a~~Lf~~~a~~~~~~~~~~~~~~~i~~~c~glPL 146 (760)
+|-.++..+.|..-. -.--++.+.+|+++..|-|-
T Consensus 184 ~eL~~Iv~r~a~~l~-i~i~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 184 EELEEIVKRSAKILG-IEIDEEAALEIARRSRGTPR 218 (332)
T ss_pred HHHHHHHHHHHHHhC-CCCChHHHHHHHHhccCCcH
Confidence 677777777772111 11113568899999999995
No 329
>PHA02244 ATPase-like protein
Probab=86.93 E-value=2.1 Score=44.52 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+|||++|+++++...
T Consensus 128 pGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 128 AGSGKNHIAEQIAEALD 144 (383)
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998754
No 330
>PRK06936 type III secretion system ATPase; Provisional
Probab=86.82 E-value=1.8 Score=46.32 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=46.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCcccc-------chhhHH------HHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELR-------EEVESS------RASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-------~~~~~~------~~~~~~~~ 67 (760)
.|+|||||.+.+++... -+.++++-+.++. .+.++.+..+..-+.... ++.... .+..+-++
T Consensus 171 sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEy 246 (439)
T PRK06936 171 AGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEY 246 (439)
T ss_pred CCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999998754 3577788777765 444555443332111110 111111 11223344
Q ss_pred HH-cCCcEEEEEECCCCc
Q 048566 68 LR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~-~~~r~LlVlDdv~~~ 84 (760)
++ +|+++|+++||+...
T Consensus 247 frd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 247 FRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHcCCCEEEeccchhHH
Confidence 43 479999999999654
No 331
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=86.71 E-value=9.7 Score=39.69 Aligned_cols=52 Identities=13% Similarity=0.058 Sum_probs=33.8
Q ss_pred HHHHHHHHHHH----cCCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 59 SRASRIFERLR----NEKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 59 ~~~~~~~~~l~----~~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+.+..+.+.+. .+++=++|+|+++.. +..+.+...+..-.++..+|++|.+.
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 172 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARI 172 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECCh
Confidence 34445555543 245568889999876 35677766676666677777777765
No 332
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=86.70 E-value=0.71 Score=42.87 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPD 36 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~ 36 (760)
.|+|||.+|+++++...+ +.....+-+++++-..
T Consensus 12 sGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 12 SGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp TTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred CCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 599999999999998763 2355677788776444
No 333
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=86.68 E-value=0.64 Score=44.48 Aligned_cols=98 Identities=9% Similarity=0.033 Sum_probs=47.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC-CCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ-IPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDd 80 (760)
.|.||||++..+...... .....+++--.. ...... ...+..+-.. ..+.....+.+...++. ..=.|++|.
T Consensus 10 tGSGKTTll~~ll~~~~~--~~~~~i~t~e~~~E~~~~~-~~~~i~q~~v---g~~~~~~~~~i~~aLr~-~pd~ii~gE 82 (198)
T cd01131 10 TGSGKSTTLAAMIDYINK--NKTHHILTIEDPIEFVHES-KRSLINQREV---GLDTLSFENALKAALRQ-DPDVILVGE 82 (198)
T ss_pred CCCCHHHHHHHHHHHhhh--cCCcEEEEEcCCccccccC-ccceeeeccc---CCCccCHHHHHHHHhcC-CcCEEEEcC
Confidence 599999999998877652 233333332111 110000 0011111000 01112233445555664 566999999
Q ss_pred CCCccccccccccccCCCCCcEEEEeeCC
Q 048566 81 IWKHLDLETVGIPFGEDHKGCKLLLTARD 109 (760)
Q Consensus 81 v~~~~~~~~l~~~~~~~~~gs~IlvTTR~ 109 (760)
+.+.+.++..... ...|-.|+.|+-.
T Consensus 83 ird~e~~~~~l~~---a~~G~~v~~t~Ha 108 (198)
T cd01131 83 MRDLETIRLALTA---AETGHLVMSTLHT 108 (198)
T ss_pred CCCHHHHHHHHHH---HHcCCEEEEEecC
Confidence 9877655443222 2234445555543
No 334
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.67 E-value=2.8 Score=43.75 Aligned_cols=78 Identities=24% Similarity=0.432 Sum_probs=50.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCcccc-------chhh------HHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELR-------EEVE------SSRASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-------~~~~------~~~~~~~~~~ 67 (760)
+|+|||||.-++++... +|.++-.=+.++- -++++.++.+..-+.... ++.. ...+..+-++
T Consensus 172 sGVGKStLLgMiar~t~----aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAEy 247 (441)
T COG1157 172 SGVGKSTLLGMIARNTE----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAEY 247 (441)
T ss_pred CCCcHHHHHHHHhcccc----CCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999998754 7776655555543 667777777654433211 1111 1123455566
Q ss_pred HH-cCCcEEEEEECCCC
Q 048566 68 LR-NEKKILVVLDNIWK 83 (760)
Q Consensus 68 l~-~~~r~LlVlDdv~~ 83 (760)
++ +||++|+++|-+..
T Consensus 248 FRDqG~~VLL~mDSlTR 264 (441)
T COG1157 248 FRDQGKRVLLIMDSLTR 264 (441)
T ss_pred HHhCCCeEEEEeecHHH
Confidence 65 48999999999854
No 335
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=86.53 E-value=1.9 Score=43.28 Aligned_cols=99 Identities=22% Similarity=0.182 Sum_probs=53.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEE---ecCCCCHHHHHHHHHHHhCccc--------cchhhHHHHHHHHHHHHc
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSE---VSQIPDIKRIQQEIAEKLGLEL--------REEVESSRASRIFERLRN 70 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~---~~~~~~~~~~~~~i~~~l~~~~--------~~~~~~~~~~~~~~~l~~ 70 (760)
.|.||||+.+.++..... ..+.++++ +...... .+++.....-. +-.+.......+..-++.
T Consensus 120 ~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~~ 192 (270)
T TIGR02858 120 PQCGKTTLLRDLARILST---GISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIRS 192 (270)
T ss_pred CCCCHHHHHHHHhCccCC---CCceEEECCEEeecchhH----HHHHHHhcccccccccccccccccchHHHHHHHHHHh
Confidence 599999999999977642 23444442 2211111 22322221100 000111112234444443
Q ss_pred CCcEEEEEECCCCccccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
-.+=++++|.+...+.+..+...+. .|..||+||-+.
T Consensus 193 ~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~ 229 (270)
T TIGR02858 193 MSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGR 229 (270)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechh
Confidence 4788999999987776666654432 466799999864
No 336
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=86.52 E-value=1.8 Score=46.49 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=42.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhC-----ccccchh-hH------HHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLG-----LELREEV-ES------SRASRIFERLR 69 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~-----~~~~~~~-~~------~~~~~~~~~l~ 69 (760)
.|+|||||++.++.... ...+++|..-.+..++.++.+..+.... .-...++ .. .....+-++++
T Consensus 174 SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyfr 250 (450)
T PRK06002 174 SGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYFR 250 (450)
T ss_pred CCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 59999999988876543 1234555543333455555444433321 1111111 11 11222333333
Q ss_pred -cCCcEEEEEECCCCc
Q 048566 70 -NEKKILVVLDNIWKH 84 (760)
Q Consensus 70 -~~~r~LlVlDdv~~~ 84 (760)
+|+++|+++||+...
T Consensus 251 d~G~~Vll~~DslTr~ 266 (450)
T PRK06002 251 DRGENVLLIVDSVTRF 266 (450)
T ss_pred HcCCCEEEeccchHHH
Confidence 379999999998654
No 337
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=86.49 E-value=3.8 Score=41.34 Aligned_cols=80 Identities=20% Similarity=0.260 Sum_probs=43.4
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccccc----hhhHHHH-HHHHHHHHcCCcE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELRE----EVESSRA-SRIFERLRNEKKI 74 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~-~~~~~~l~~~~r~ 74 (760)
.+|+||||+|.+++.....+ -..+.+++..... ...+-++..++..+.+... .+..... ..+..... +..-
T Consensus 80 ~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~-~~~D 156 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA-RNID 156 (272)
T ss_pred CCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH-CCCC
Confidence 47999999999999877532 2467788765421 2233344455555544211 1121221 22322223 3455
Q ss_pred EEEEECCCC
Q 048566 75 LVVLDNIWK 83 (760)
Q Consensus 75 LlVlDdv~~ 83 (760)
+|++|-.-.
T Consensus 157 ~ViIDT~G~ 165 (272)
T TIGR00064 157 VVLIDTAGR 165 (272)
T ss_pred EEEEeCCCC
Confidence 788887644
No 338
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=86.42 E-value=1 Score=46.18 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=29.6
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQE 43 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 43 (760)
.|||||||+|.+.+-..... ...++-|+.....++..++..
T Consensus 10 KGGVGKTT~aaA~A~~lA~~--g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 10 KGGVGKTTIAAATAVKLAES--GKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred CCcccHHHHHHHHHHHHHHc--CCcEEEEEeCCCCchHhhhcc
Confidence 49999999999988777643 355777777666666555544
No 339
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=86.38 E-value=1.5 Score=44.18 Aligned_cols=45 Identities=13% Similarity=0.270 Sum_probs=33.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcc
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLE 51 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 51 (760)
+|.|||++|.++....... +..++||+..+. ...+.+...+ ++.+
T Consensus 32 pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~~-~g~d 76 (260)
T COG0467 32 PGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENARS-FGWD 76 (260)
T ss_pred CCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHHH-cCCC
Confidence 7999999999999998743 888999988763 4455555444 5544
No 340
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=86.27 E-value=2 Score=37.84 Aligned_cols=29 Identities=17% Similarity=0.048 Sum_probs=22.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSE 30 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~ 30 (760)
.|.|||+.+..+..+.........++|+.
T Consensus 9 ~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 9 TGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 69999999999888876543456677775
No 341
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=86.21 E-value=2 Score=40.35 Aligned_cols=17 Identities=29% Similarity=0.278 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
++|+||||+|+.++...
T Consensus 7 ~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 7 GPGSGKGTQCAKIVENF 23 (183)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 48999999999998764
No 342
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=86.17 E-value=2.6 Score=41.68 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
.||+|||+||..++-...
T Consensus 9 ~~G~GKS~lal~la~~va 26 (239)
T cd01125 9 PGGTGKSSLLLVLALAMA 26 (239)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 489999999999988754
No 343
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=86.10 E-value=1.1 Score=45.12 Aligned_cols=19 Identities=32% Similarity=0.305 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHHHHhh
Q 048566 1 MGGIGKTTLVKKVARQAME 19 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~ 19 (760)
.+|.||||+|+++......
T Consensus 9 ~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 9 LPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -TTSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHh
Confidence 4899999999999998764
No 344
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=86.05 E-value=2.3 Score=45.84 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=45.8
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHHHHHHHHHHHhCccccch----hhHHHHHHHHHHHHcCCcEE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIKRIQQEIAEKLGLELREE----VESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~~l~~~~r~L 75 (760)
.+|+||||+|..++.....+ .+ .+.-|++... ....+.++.++++++.+.... +....+....++... . -+
T Consensus 103 ~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~-~-Dv 178 (437)
T PRK00771 103 LQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKK-A-DV 178 (437)
T ss_pred CCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhhc-C-CE
Confidence 37999999999999887633 33 4555665432 233455666777776554321 122223334444432 3 56
Q ss_pred EEEECCCC
Q 048566 76 VVLDNIWK 83 (760)
Q Consensus 76 lVlDdv~~ 83 (760)
||+|..-.
T Consensus 179 VIIDTAGr 186 (437)
T PRK00771 179 IIVDTAGR 186 (437)
T ss_pred EEEECCCc
Confidence 88888743
No 345
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=86.03 E-value=5 Score=39.33 Aligned_cols=44 Identities=25% Similarity=0.411 Sum_probs=28.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCc
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGL 50 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 50 (760)
+|.||||+|.+++.....+ -..++|++.... ...+.+. +++++.
T Consensus 29 ~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~--~~~i~~~-~~~~g~ 72 (229)
T TIGR03881 29 PGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES--RESIIRQ-AAQFGM 72 (229)
T ss_pred CCCChHHHHHHHHHHHHhc--CCeEEEEEccCC--HHHHHHH-HHHhCC
Confidence 6999999999987665422 457889987443 3344333 444443
No 346
>PRK08233 hypothetical protein; Provisional
Probab=86.00 E-value=2 Score=40.28 Aligned_cols=17 Identities=35% Similarity=0.591 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
.+|.||||+|+.++...
T Consensus 11 ~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 11 VSGGGKTTLTERLTHKL 27 (182)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 37999999999999765
No 347
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=85.84 E-value=2.4 Score=46.45 Aligned_cols=79 Identities=22% Similarity=0.357 Sum_probs=45.7
Q ss_pred CCCcHHHHH-HHHHHHHhhhcCCCe-EEEEEecCCC-CHHHHHHHHHHHhCcccc------chh-hH------HHHHHHH
Q 048566 2 GGIGKTTLV-KKVARQAMEDKLFDM-VVFSEVSQIP-DIKRIQQEIAEKLGLELR------EEV-ES------SRASRIF 65 (760)
Q Consensus 2 gGiGKTtLA-~~~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~-~~------~~~~~~~ 65 (760)
.|+|||||| ..+.++. ..+. ++++-+.++. .+.++.+.+...=..... .++ .. -....+-
T Consensus 170 ~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a~aiA 245 (501)
T TIGR00962 170 RQTGKTAVAIDTIINQK----DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTGCTMA 245 (501)
T ss_pred CCCCccHHHHHHHHhhc----CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 399999997 5566653 2456 4788887765 556666666553211110 111 10 1122233
Q ss_pred HHHH-cCCcEEEEEECCCCc
Q 048566 66 ERLR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 66 ~~l~-~~~r~LlVlDdv~~~ 84 (760)
++++ +|+++|||+||+...
T Consensus 246 Eyfrd~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 246 EYFRDNGKHALIIYDDLSKH 265 (501)
T ss_pred HHHHHcCCCEEEEecchHHH
Confidence 3333 379999999999765
No 348
>PRK14974 cell division protein FtsY; Provisional
Probab=85.83 E-value=3.5 Score=42.78 Aligned_cols=82 Identities=23% Similarity=0.261 Sum_probs=43.5
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHHHHHHHHHHHhCccccc----hhhHHHHHHHHHHHHcCCcEE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIKRIQQEIAEKLGLELRE----EVESSRASRIFERLRNEKKIL 75 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~~l~~~~r~L 75 (760)
++|+||||++.+++..... ..+ .++.++.... ....+.++..++.++.+... .+....+....+.......-+
T Consensus 148 ~~GvGKTTtiakLA~~l~~-~g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~Dv 225 (336)
T PRK14974 148 VNGTGKTTTIAKLAYYLKK-NGF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGIDV 225 (336)
T ss_pred CCCCCHHHHHHHHHHHHHH-cCC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCCE
Confidence 4799999999999887653 334 3445554321 23334556667777654321 111122222222222112338
Q ss_pred EEEECCCCc
Q 048566 76 VVLDNIWKH 84 (760)
Q Consensus 76 lVlDdv~~~ 84 (760)
|++|-.-..
T Consensus 226 VLIDTaGr~ 234 (336)
T PRK14974 226 VLIDTAGRM 234 (336)
T ss_pred EEEECCCcc
Confidence 888987544
No 349
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=85.82 E-value=3.7 Score=39.94 Aligned_cols=34 Identities=12% Similarity=-0.016 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP 35 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~ 35 (760)
.|.||||+|+.+.........=..+..++...-+
T Consensus 8 sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 8 VAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 6999999999999876521011235555554433
No 350
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.74 E-value=4.1 Score=43.63 Aligned_cols=78 Identities=23% Similarity=0.284 Sum_probs=40.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDd 80 (760)
.|+||||++..++.........+.+..+..... ....+-+....+.++.+................+. ..-++++|-
T Consensus 200 nG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~--~~d~VLIDT 277 (420)
T PRK14721 200 TGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR--GKHMVLIDT 277 (420)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc--CCCEEEecC
Confidence 599999999998876432222344555554432 23334455556666655432222222223333343 334556665
Q ss_pred C
Q 048566 81 I 81 (760)
Q Consensus 81 v 81 (760)
.
T Consensus 278 a 278 (420)
T PRK14721 278 V 278 (420)
T ss_pred C
Confidence 4
No 351
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=85.72 E-value=1.1 Score=42.13 Aligned_cols=41 Identities=24% Similarity=0.292 Sum_probs=27.2
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAE 46 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 46 (760)
|=|+||||||++++++...+ ++.-.+...+=+...++++-+
T Consensus 12 ~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 12 MIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhHHH
Confidence 45999999999999987522 334445555555555555544
No 352
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=85.71 E-value=1.1 Score=45.44 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPD 36 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~ 36 (760)
||+||||+|..++.....+ . ..|+-||.....+
T Consensus 10 GGvGKTT~~~nLA~~La~~-G-~kVlliD~Dpq~n 42 (270)
T cd02040 10 GGIGKSTTTQNLSAALAEM-G-KKVMIVGCDPKAD 42 (270)
T ss_pred CcCCHHHHHHHHHHHHHhC-C-CeEEEEEcCCCCC
Confidence 8999999999999887633 2 2577787765543
No 353
>PRK06217 hypothetical protein; Validated
Probab=85.66 E-value=2.1 Score=40.30 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=20.4
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCC--CeEEEE
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLF--DMVVFS 29 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F--~~~~wv 29 (760)
++|.||||+|+++...... .+| |..+|.
T Consensus 9 ~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 9 ASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred CCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 4799999999999988643 233 446664
No 354
>PRK03839 putative kinase; Provisional
Probab=85.64 E-value=0.55 Score=44.19 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
|+|+||||+|+++++...
T Consensus 8 ~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 8 TPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 689999999999998864
No 355
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=85.62 E-value=2.2 Score=44.16 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=16.2
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 048566 2 GGIGKTTLVKKVARQAME 19 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~ 19 (760)
+|+|||.+|++++++..+
T Consensus 157 PGcGKTllAraiA~elg~ 174 (413)
T PLN00020 157 KGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCCHHHHHHHHHHHcCC
Confidence 799999999999999753
No 356
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=85.59 E-value=3.1 Score=41.80 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=31.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKL 48 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 48 (760)
+|+|||++|.+++.+....+. ..|+|++..- +..++...++...
T Consensus 28 pg~GKT~~~l~ia~~~a~~~~-~~vly~SlEm--~~~~l~~R~la~~ 71 (259)
T PF03796_consen 28 PGVGKTAFALQIALNAALNGG-YPVLYFSLEM--SEEELAARLLARL 71 (259)
T ss_dssp TTSSHHHHHHHHHHHHHHTTS-SEEEEEESSS---HHHHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHHHhcC-CeEEEEcCCC--CHHHHHHHHHHHh
Confidence 799999999999999875433 6788887543 4556666665544
No 357
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.57 E-value=0.65 Score=27.46 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=11.9
Q ss_pred cccceeecccCcccccchh
Q 048566 396 KNLEVLSFLMSDIMQLPEE 414 (760)
Q Consensus 396 ~~L~~L~l~~~~i~~lp~~ 414 (760)
.+|++|++++|.++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 358
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.57 E-value=0.65 Score=27.46 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=11.9
Q ss_pred cccceeecccCcccccchh
Q 048566 396 KNLEVLSFLMSDIMQLPEE 414 (760)
Q Consensus 396 ~~L~~L~l~~~~i~~lp~~ 414 (760)
.+|++|++++|.++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 359
>PRK00625 shikimate kinase; Provisional
Probab=85.44 E-value=0.59 Score=43.48 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
|+|+||||+|+.+++...
T Consensus 8 ~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 8 LPTVGKTSFGKALAKFLS 25 (173)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 789999999999988764
No 360
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=85.40 E-value=3.4 Score=45.07 Aligned_cols=51 Identities=20% Similarity=0.185 Sum_probs=31.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHHHHHHHHHHHhCccc
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIKRIQQEIAEKLGLEL 52 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 52 (760)
.|+||||++.+++.....++.-..|..|+.... ....+-++...+.++.+.
T Consensus 265 nGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 265 TGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 599999999999987654332234666665432 233444555556665544
No 361
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.38 E-value=1.8 Score=38.52 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQ 42 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 42 (760)
+|+|||+||+.+++... ..+.-+.++...+..++..
T Consensus 8 ~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 8 PGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp SSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHC
T ss_pred CCCCHHHHHHHHHHHhh-----cceEEEEecccccccccee
Confidence 69999999999998873 2344567777767665543
No 362
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=85.22 E-value=1.1 Score=51.98 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|+|||++|+.++.... ...+.+++++..... .+.+-+|.+..... .+....+.+.++....-+|+||++
T Consensus 497 ~GvGKT~lAk~LA~~l~-----~~~i~id~se~~~~~----~~~~LiG~~~gyvg-~~~~g~L~~~v~~~p~sVlllDEi 566 (758)
T PRK11034 497 TGVGKTEVTVQLSKALG-----IELLRFDMSEYMERH----TVSRLIGAPPGYVG-FDQGGLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_pred CCCCHHHHHHHHHHHhC-----CCcEEeechhhcccc----cHHHHcCCCCCccc-ccccchHHHHHHhCCCcEEEeccH
Confidence 59999999999988763 223455655432111 12222333221100 011122333344335569999999
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 567 eka 569 (758)
T PRK11034 567 EKA 569 (758)
T ss_pred hhh
Confidence 876
No 363
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=85.20 E-value=0.72 Score=38.70 Aligned_cols=17 Identities=41% Similarity=0.599 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
||+||||+|..++....
T Consensus 9 gG~Gkst~~~~la~~~~ 25 (104)
T cd02042 9 GGVGKTTTAVNLAAALA 25 (104)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 89999999999998876
No 364
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=85.15 E-value=4.7 Score=48.08 Aligned_cols=70 Identities=17% Similarity=0.372 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCC----Ce-EEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHc-CCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLF----DM-VVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRN-EKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F----~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~~r~L 75 (760)
+|+|||++|..++++....... .. ++.++++ .+.. +.... .+.+..+..+.+.+.. +++.+
T Consensus 203 pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~a------~~~~~-g~~e~~l~~~l~~~~~~~~~~I 269 (852)
T TIGR03346 203 PGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALIA------GAKYR-GEFEERLKAVLNEVTKSEGQII 269 (852)
T ss_pred CCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHhh------cchhh-hhHHHHHHHHHHHHHhcCCCeE
Confidence 6999999999999886432111 22 3333321 1110 11111 1123344555555542 46899
Q ss_pred EEEECCCCc
Q 048566 76 VVLDNIWKH 84 (760)
Q Consensus 76 lVlDdv~~~ 84 (760)
|++|++...
T Consensus 270 LfIDEih~l 278 (852)
T TIGR03346 270 LFIDELHTL 278 (852)
T ss_pred EEeccHHHh
Confidence 999999744
No 365
>PRK10865 protein disaggregation chaperone; Provisional
Probab=85.13 E-value=2.3 Score=50.44 Aligned_cols=70 Identities=19% Similarity=0.380 Sum_probs=38.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcC----CC-eEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHH-cCCcEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKL----FD-MVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLR-NEKKIL 75 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~----F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~r~L 75 (760)
+|+|||++|..++........ .+ .+++++++. +.. +.... ...++.+..+.+.+. .+++.+
T Consensus 208 pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~a------g~~~~-g~~e~~lk~~~~~~~~~~~~~I 274 (857)
T PRK10865 208 PGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVA------GAKYR-GEFEERLKGVLNDLAKQEGNVI 274 (857)
T ss_pred CCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhh------ccchh-hhhHHHHHHHHHHHHHcCCCeE
Confidence 799999999999998642211 12 234444332 110 01111 112233444554443 247899
Q ss_pred EEEECCCCc
Q 048566 76 VVLDNIWKH 84 (760)
Q Consensus 76 lVlDdv~~~ 84 (760)
|++|++...
T Consensus 275 LfIDEih~l 283 (857)
T PRK10865 275 LFIDELHTM 283 (857)
T ss_pred EEEecHHHh
Confidence 999998754
No 366
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=85.06 E-value=1.2 Score=45.77 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=25.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQ 42 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 42 (760)
||+||||+|.+.+-....++ ..++-++.....++..++.
T Consensus 10 GGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 10 GGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHhC
Confidence 89999999988888766432 3466666555445444443
No 367
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.00 E-value=0.68 Score=52.21 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+||||+|+.++....
T Consensus 119 ~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 119 SGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 69999999999998754
No 368
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=84.97 E-value=3.8 Score=43.89 Aligned_cols=49 Identities=20% Similarity=0.133 Sum_probs=30.3
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHHHHHHHHHHHhCcc
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIKRIQQEIAEKLGLE 51 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 51 (760)
.+|+||||+|.+++.....+ .+ .++.|+.... ....+-++...+..+.+
T Consensus 108 ~~GvGKTTtaaKLA~~l~~~-G~-kV~lV~~D~~R~aA~eQLk~~a~~~~vp 157 (429)
T TIGR01425 108 LQGSGKTTTCTKLAYYYQRK-GF-KPCLVCADTFRAGAFDQLKQNATKARIP 157 (429)
T ss_pred CCCCCHHHHHHHHHHHHHHC-CC-CEEEEcCcccchhHHHHHHHHhhccCCe
Confidence 37999999999999876633 33 5667765432 23333444455555544
No 369
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=84.83 E-value=3.5 Score=47.44 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=46.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEEC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDN 80 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDd 80 (760)
.|+||||.+.+++......+....|..++.... ....+.++...+.++.+.....+...+....+.+. ++ =+|++|-
T Consensus 194 nGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~~-D~VLIDT 271 (767)
T PRK14723 194 TGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-DK-HLVLIDT 271 (767)
T ss_pred CCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-CC-CEEEEeC
Confidence 599999999999987643322345677765432 23456666667777665532222223344444444 23 4677777
Q ss_pred CC
Q 048566 81 IW 82 (760)
Q Consensus 81 v~ 82 (760)
.-
T Consensus 272 AG 273 (767)
T PRK14723 272 VG 273 (767)
T ss_pred CC
Confidence 65
No 370
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=84.79 E-value=0.93 Score=39.43 Aligned_cols=15 Identities=33% Similarity=0.720 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQ 16 (760)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (760)
+|+|||.|+..+..+
T Consensus 17 sgVGKssLl~rF~dd 31 (198)
T KOG0079|consen 17 SGVGKSSLLLRFADD 31 (198)
T ss_pred CcccHHHHHHHHhhc
Confidence 699999999998876
No 371
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=84.50 E-value=26 Score=34.34 Aligned_cols=78 Identities=17% Similarity=0.240 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCeEEEEEec-CCCCHHHHHHHHHHHhCccccch---hhHHHHHHHHHHHHcCCc-EEEE
Q 048566 3 GIGKTTLVKKVARQAMEDKLFDMVVFSEVS-QIPDIKRIQQEIAEKLGLELREE---VESSRASRIFERLRNEKK-ILVV 77 (760)
Q Consensus 3 GiGKTtLA~~~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~l~~~~r-~LlV 77 (760)
|.|||.++++.......+ +... |.+. ...+...+...|.-.+..+..-. ........+..-..+++| +.++
T Consensus 61 GsGKTv~~Ral~~s~~~d---~~~~-v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~ 136 (269)
T COG3267 61 GSGKTVLRRALLASLNED---QVAV-VVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVLM 136 (269)
T ss_pred CCchhHHHHHHHHhcCCC---ceEE-EEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCeEEe
Confidence 899999999666554322 1222 3333 33467778888888876633211 112223334444455777 9999
Q ss_pred EECCCCc
Q 048566 78 LDNIWKH 84 (760)
Q Consensus 78 lDdv~~~ 84 (760)
.|+..+.
T Consensus 137 vdEah~L 143 (269)
T COG3267 137 VDEAHDL 143 (269)
T ss_pred ehhHhhh
Confidence 9998654
No 372
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=84.46 E-value=5.9 Score=37.18 Aligned_cols=107 Identities=21% Similarity=0.163 Sum_probs=57.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC---CCCHHHHHHHHH--H--HhCcc--cc---chhh----HHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ---IPDIKRIQQEIA--E--KLGLE--LR---EEVE----SSRASRIF 65 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~i~--~--~l~~~--~~---~~~~----~~~~~~~~ 65 (760)
.|-||||.|..++-+..-. =..|..+-+-+ .......++.+- . +.+.. .. .+.+ .+.....+
T Consensus 31 ~GkGKtt~a~g~a~ra~g~--G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~~~~a~ 108 (191)
T PRK05986 31 NGKGKSTAAFGMALRAVGH--GKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAREGWEEAK 108 (191)
T ss_pred CCCChHHHHHHHHHHHHHC--CCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHHHHHHHH
Confidence 4899999999999887632 22344444322 224444444321 0 01111 00 0111 11233445
Q ss_pred HHHHcCCcEEEEEECCCCcc-----ccccccccccCCCCCcEEEEeeCCH
Q 048566 66 ERLRNEKKILVVLDNIWKHL-----DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 66 ~~l~~~~r~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+.+.+++-=+||||.+-..- +.+++...+.....+.-||+|-|+.
T Consensus 109 ~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 109 RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 55555566799999985542 2344444455555677899999965
No 373
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=84.42 E-value=9.8 Score=36.76 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=46.0
Q ss_pred CCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHc-CCcEEEEEECC
Q 048566 3 GIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRN-EKKILVVLDNI 81 (760)
Q Consensus 3 GiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~~r~LlVlDdv 81 (760)
|.||+.|.+++.+....+ .-. -|.|++. +......+.+.|+. .+||.|..||.
T Consensus 95 GtGKSSLVKA~~~e~~~~--glr--LVEV~k~----------------------dl~~Lp~l~~~Lr~~~~kFIlFcDDL 148 (287)
T COG2607 95 GTGKSSLVKALLNEYADE--GLR--LVEVDKE----------------------DLATLPDLVELLRARPEKFILFCDDL 148 (287)
T ss_pred CCChHHHHHHHHHHHHhc--CCe--EEEEcHH----------------------HHhhHHHHHHHHhcCCceEEEEecCC
Confidence 899999999999987744 211 3333321 11122334444442 58999999998
Q ss_pred CCcc---cccccccccc---CCCCCcEEEEeeCCH
Q 048566 82 WKHL---DLETVGIPFG---EDHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~---~~~~l~~~~~---~~~~gs~IlvTTR~~ 110 (760)
.-.+ .+..++..+. ...+...++..|.++
T Consensus 149 SFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 149 SFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred CCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 6432 3444544443 123444455556555
No 374
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=84.39 E-value=3.4 Score=41.47 Aligned_cols=51 Identities=25% Similarity=0.419 Sum_probs=34.4
Q ss_pred CCCcHHHHHHHHHHHHh-hhcCCC-------eEEEEEecCC-CCHHHHHHHHHHHhCccc
Q 048566 2 GGIGKTTLVKKVARQAM-EDKLFD-------MVVFSEVSQI-PDIKRIQQEIAEKLGLEL 52 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~-~~~~F~-------~~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 52 (760)
||+|||||+...+=... -++.|. .+++|++... .++.+-++.+..+++.+.
T Consensus 98 sg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsP 157 (402)
T COG3598 98 SGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSP 157 (402)
T ss_pred CcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCCh
Confidence 89999999987765432 234454 4788887643 366667777777776654
No 375
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=84.33 E-value=2.8 Score=48.79 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI 34 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~ 34 (760)
.|.|||++|+++++..... -...+.+++...
T Consensus 408 ~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~ 438 (686)
T PRK15429 408 TGTGKELIARAIHNLSGRN--NRRMVKMNCAAM 438 (686)
T ss_pred CCcCHHHHHHHHHHhcCCC--CCCeEEEecccC
Confidence 5999999999998865311 224556666543
No 376
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.31 E-value=4.5 Score=39.25 Aligned_cols=61 Identities=28% Similarity=0.388 Sum_probs=35.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||-.|++|+|+-.. .|+.|-.+ ++.++-. + . -...+.++++--+..|-++|.||.+
T Consensus 220 pgtgktl~aravanrtda-------cfirvigs----elvqkyv---g-e-----garmvrelf~martkkaciiffdei 279 (435)
T KOG0729|consen 220 PGTGKTLCARAVANRTDA-------CFIRVIGS----ELVQKYV---G-E-----GARMVRELFEMARTKKACIIFFDEI 279 (435)
T ss_pred CCCchhHHHHHHhcccCc-------eEEeehhH----HHHHHHh---h-h-----hHHHHHHHHHHhcccceEEEEeecc
Confidence 799999999999988542 23433211 2221111 0 0 0122344555445568899999998
Q ss_pred C
Q 048566 82 W 82 (760)
Q Consensus 82 ~ 82 (760)
+
T Consensus 280 d 280 (435)
T KOG0729|consen 280 D 280 (435)
T ss_pred c
Confidence 5
No 377
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=84.30 E-value=0.73 Score=41.30 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
++|+||||+|+.+....
T Consensus 7 ~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHC
Confidence 48999999999998664
No 378
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=84.24 E-value=3.5 Score=47.36 Aligned_cols=17 Identities=47% Similarity=0.579 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|.|||++|+.+++...
T Consensus 194 ~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 194 PGTGKTLLAKAIAGEAK 210 (644)
T ss_pred CCCCHHHHHHHHHHHcC
Confidence 79999999999988765
No 379
>PTZ00088 adenylate kinase 1; Provisional
Probab=84.22 E-value=1.3 Score=43.39 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
++|+||||+|+.++....
T Consensus 14 ~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 14 APGVGKGTFAEILSKKEN 31 (229)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 589999999999988753
No 380
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=83.89 E-value=5.2 Score=39.10 Aligned_cols=31 Identities=19% Similarity=0.284 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI 34 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~ 34 (760)
+|+|||++|.+++.....+ =..++|++....
T Consensus 25 ~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~ 55 (224)
T TIGR03880 25 YGTGKTTFSLQFLYQGLKN--GEKAMYISLEER 55 (224)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEECCCC
Confidence 6999999999998775422 356888887663
No 381
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=83.60 E-value=7.1 Score=38.64 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=29.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAE 46 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 46 (760)
+|+|||++|.+++.+..... =..++|++... +..++.+.++.
T Consensus 22 ~G~GKT~~~~~~~~~~~~~~-g~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 22 PSMGKTAFALNIAENIAKKQ-GKPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CCCCHHHHHHHHHHHHHHhC-CCceEEEeCCC--CHHHHHHHHHH
Confidence 69999999999988766431 23677887655 45556665543
No 382
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=83.56 E-value=0.85 Score=38.55 Aligned_cols=18 Identities=44% Similarity=0.776 Sum_probs=15.8
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 048566 2 GGIGKTTLVKKVARQAME 19 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~ 19 (760)
+|+|||++|+.++.+...
T Consensus 7 ~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 7 PGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 799999999999988763
No 383
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=83.48 E-value=4 Score=42.54 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=26.6
Q ss_pred CCcHHHHHHHHHHHHhhhcCC-CeEEEEEe----cCCCCHHHHHHHHHHHh
Q 048566 3 GIGKTTLVKKVARQAMEDKLF-DMVVFSEV----SQIPDIKRIQQEIAEKL 48 (760)
Q Consensus 3 GiGKTtLA~~~~~~~~~~~~F-~~~~wv~~----~~~~~~~~~~~~i~~~l 48 (760)
|.||||+.+.+.+....+..- -.++|.+. ....-...++.+|..++
T Consensus 30 GsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 30 GSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred CCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 999999999999987744111 12334433 22223445555555544
No 384
>PRK05922 type III secretion system ATPase; Validated
Probab=83.45 E-value=3.6 Score=44.09 Aligned_cols=79 Identities=18% Similarity=0.317 Sum_probs=43.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCcccc------chh-hH------HHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELR------EEV-ES------SRASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~-~~------~~~~~~~~~ 67 (760)
.|+|||||++.+.+... .+....+-+.+.. .+.+.+.+.......... .++ .. ..+-.+-++
T Consensus 166 nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAEy 241 (434)
T PRK05922 166 PGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAEY 241 (434)
T ss_pred CCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999987643 3333444444433 344555554443322111 011 11 112234444
Q ss_pred HH-cCCcEEEEEECCCCc
Q 048566 68 LR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~-~~~r~LlVlDdv~~~ 84 (760)
++ +|+++|+++||+...
T Consensus 242 frd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 242 FRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHcCCCEEEeccchhHH
Confidence 43 379999999999654
No 385
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=83.44 E-value=0.9 Score=34.76 Aligned_cols=16 Identities=50% Similarity=0.696 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
.|.||||+|+++.+..
T Consensus 8 ~gsGKst~~~~l~~~l 23 (69)
T cd02019 8 SGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999999885
No 386
>PRK10037 cell division protein; Provisional
Probab=83.36 E-value=1.4 Score=44.02 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=23.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
||+||||+|..++.....+ =..|+-||...
T Consensus 11 GGvGKTT~a~nLA~~La~~--G~rVLlID~D~ 40 (250)
T PRK10037 11 GGVGTTSITAALAWSLQML--GENVLVIDACP 40 (250)
T ss_pred CCccHHHHHHHHHHHHHhc--CCcEEEEeCCh
Confidence 8999999999999887643 22577787755
No 387
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=83.35 E-value=1.4 Score=44.63 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
||+||||+|..++.....++ + .|+-||...
T Consensus 9 GGVGKTT~a~nLA~~La~~G-~-~VlliD~D~ 38 (275)
T TIGR01287 9 GGIGKSTTTQNIAAALAEMG-K-KVMIVGCDP 38 (275)
T ss_pred CcCcHHHHHHHHHHHHHHCC-C-eEEEEeCCC
Confidence 89999999999998877443 3 466666543
No 388
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=83.33 E-value=3.5 Score=44.58 Aligned_cols=79 Identities=15% Similarity=0.317 Sum_probs=44.1
Q ss_pred CCCcHHHHHH-HHHHHHhhhcCCCeE-EEEEecCCC-CHHHHHHHHHHHhCcccc------chh-hHH------HHHHHH
Q 048566 2 GGIGKTTLVK-KVARQAMEDKLFDMV-VFSEVSQIP-DIKRIQQEIAEKLGLELR------EEV-ESS------RASRIF 65 (760)
Q Consensus 2 gGiGKTtLA~-~~~~~~~~~~~F~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~-~~~------~~~~~~ 65 (760)
.|+||||||. .+.++.. -+.+ +++-+.++. .+.++.+.+...=..... .++ ... ....+-
T Consensus 150 ~g~GKt~Lal~~I~~q~~----~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~aiA 225 (485)
T CHL00059 150 RQTGKTAVATDTILNQKG----QNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALA 225 (485)
T ss_pred CCCCHHHHHHHHHHhccc----CCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhHH
Confidence 5999999965 4555432 3544 778887655 556666666543211110 111 111 112233
Q ss_pred HHHH-cCCcEEEEEECCCCc
Q 048566 66 ERLR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 66 ~~l~-~~~r~LlVlDdv~~~ 84 (760)
++++ +|+++|+|+||+...
T Consensus 226 Eyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 226 EYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHHcCCCEEEEEcChhHH
Confidence 3333 379999999999765
No 389
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=83.25 E-value=3.2 Score=44.48 Aligned_cols=76 Identities=18% Similarity=0.351 Sum_probs=41.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCC-HHHHHHHHHHHhCcccc---------chhhH------HHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPD-IKRIQQEIAEKLGLELR---------EEVES------SRASRIF 65 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~---------~~~~~------~~~~~~~ 65 (760)
.|+|||||++.++.... -+.++..-+.+... ..+..+. .++.... ++... .....+-
T Consensus 166 sG~GKStLl~~i~~~~~----~~v~vi~~iGergrev~e~~~~---~l~~~l~~tvvV~atsddsp~~R~~~~~~a~~iA 238 (434)
T PRK08472 166 SGVGKSTLMGMIVKGCL----APIKVVALIGERGREIPEFIEK---NLGGDLENTVIVVATSDDSPLMRKYGAFCAMSVA 238 (434)
T ss_pred CCCCHHHHHHHHhhccC----CCEEEEEeeCccchhHHHHHHH---HhcCcccceEEEEECCCCCHHHhhHHHHHHHHHH
Confidence 59999999999987543 23444444544432 2333332 2222100 01110 1123344
Q ss_pred HHHH-cCCcEEEEEECCCCc
Q 048566 66 ERLR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 66 ~~l~-~~~r~LlVlDdv~~~ 84 (760)
++++ +|+++|+++||+...
T Consensus 239 EyFrd~G~~Vll~~DslTr~ 258 (434)
T PRK08472 239 EYFKNQGLDVLFIMDSVTRF 258 (434)
T ss_pred HHHHHcCCCEEEecccchHH
Confidence 4443 379999999999754
No 390
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=83.21 E-value=8.8 Score=43.86 Aligned_cols=63 Identities=29% Similarity=0.289 Sum_probs=36.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||-||++++-...+- |++++... ..+.+... -...+..++..-+...+..|.+|.+
T Consensus 353 PGTGKTLLAKAiAGEAgVP-------F~svSGSE--------FvE~~~g~-----~asrvr~lf~~ar~~aP~iifidei 412 (774)
T KOG0731|consen 353 PGTGKTLLAKAIAGEAGVP-------FFSVSGSE--------FVEMFVGV-----GASRVRDLFPLARKNAPSIIFIDEI 412 (774)
T ss_pred CCCcHHHHHHHHhcccCCc-------eeeechHH--------HHHHhccc-----chHHHHHHHHHhhccCCeEEEeccc
Confidence 7999999999999887654 45555421 11111110 0233444555555456777777777
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 413 da~ 415 (774)
T KOG0731|consen 413 DAV 415 (774)
T ss_pred ccc
Confidence 543
No 391
>PRK13768 GTPase; Provisional
Probab=83.20 E-value=5.3 Score=39.87 Aligned_cols=30 Identities=30% Similarity=0.259 Sum_probs=21.6
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVS 32 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~ 32 (760)
.||+||||+|..+....... -..++.|+..
T Consensus 10 ~~G~GKTt~~~~~~~~l~~~--g~~v~~i~~D 39 (253)
T PRK13768 10 TAGSGKTTLTKALSDWLEEQ--GYDVAIVNLD 39 (253)
T ss_pred CCCccHHHHHHHHHHHHHhc--CCceEEEECC
Confidence 48999999999999887633 2356666653
No 392
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=83.09 E-value=3.4 Score=44.47 Aligned_cols=79 Identities=23% Similarity=0.405 Sum_probs=43.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCcccc------c-hhhHH------HHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELR------E-EVESS------RASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~-~~~~~------~~~~~~~~ 67 (760)
.|+|||||++.+..... .+.++...+.... .+.++.+.+...-+.... . +.... .+..+-++
T Consensus 177 sG~GKSTLl~~I~g~~~----~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~aiAEy 252 (451)
T PRK05688 177 TGVGKSVLLGMMTRFTE----ADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAEY 252 (451)
T ss_pred CCCCHHHHHHHHhCCCC----CCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999998876432 3444444454443 455555555443222110 0 11111 12233344
Q ss_pred HH-cCCcEEEEEECCCCc
Q 048566 68 LR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~-~~~r~LlVlDdv~~~ 84 (760)
++ +|+++|+++||+...
T Consensus 253 frd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 253 FRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHCCCCEEEEecchhHH
Confidence 43 479999999998654
No 393
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=83.04 E-value=1.4 Score=41.15 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=23.3
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
.||+||||+|.+++.....+ . ..++-||...
T Consensus 8 kgG~GKtt~a~~la~~l~~~-g-~~vllvD~D~ 38 (179)
T cd02036 8 KGGVGKTTTTANLGTALAQL-G-YKVVLIDADL 38 (179)
T ss_pred CCCCCHHHHHHHHHHHHHhC-C-CeEEEEeCCC
Confidence 39999999999999987633 2 3566777654
No 394
>PRK09099 type III secretion system ATPase; Provisional
Probab=82.92 E-value=2.9 Score=44.98 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=43.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcccc------c-hhhH------HHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR------E-EVES------SRASRIFERL 68 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~-~~~~------~~~~~~~~~l 68 (760)
.|+|||||++.++...... .++++..-.+...+.++.+.+...-+.... . +... .....+-+++
T Consensus 172 sG~GKTtLl~~ia~~~~~d---~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAEyf 248 (441)
T PRK09099 172 AGVGKSTLMGMFARGTQCD---VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAEYF 248 (441)
T ss_pred CCCCHHHHHHHHhCCCCCC---eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 5999999999998764421 234443333333555655655543221110 0 1111 1122333444
Q ss_pred H-cCCcEEEEEECCCCc
Q 048566 69 R-NEKKILVVLDNIWKH 84 (760)
Q Consensus 69 ~-~~~r~LlVlDdv~~~ 84 (760)
+ +|+++|+++||+...
T Consensus 249 rd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 249 RDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHcCCCEEEeccchhHH
Confidence 3 479999999998654
No 395
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=82.77 E-value=4.1 Score=42.03 Aligned_cols=79 Identities=24% Similarity=0.391 Sum_probs=42.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC-CCCHHHHHHHHHHHhCcccc-------chhhH------HHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ-IPDIKRIQQEIAEKLGLELR-------EEVES------SRASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~-------~~~~~------~~~~~~~~~ 67 (760)
.|.|||||++.+.+... -+..+..-+.. ...+.++.++....-+.... ++... ...-.+-++
T Consensus 78 sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AEy 153 (326)
T cd01136 78 SGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEY 153 (326)
T ss_pred CCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999887654 23333344443 33555655555543221110 11111 112223333
Q ss_pred HH-cCCcEEEEEECCCCc
Q 048566 68 LR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~-~~~r~LlVlDdv~~~ 84 (760)
++ +|+.+|+++||+...
T Consensus 154 fr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 154 FRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHcCCCeEEEeccchHH
Confidence 32 479999999998654
No 396
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=82.67 E-value=5.3 Score=44.23 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=29.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCc
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGL 50 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 50 (760)
+|.||||+|.+++.+...+ .=..++||+..+ +..++.+. ++.++.
T Consensus 30 pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE--~~~~l~~~-~~~~G~ 74 (484)
T TIGR02655 30 SGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEE--SPQDIIKN-ARSFGW 74 (484)
T ss_pred CCCCHHHHHHHHHHHHHHh-CCCCEEEEEEec--CHHHHHHH-HHHcCC
Confidence 7999999999997765422 125788998864 44444444 344443
No 397
>PRK06762 hypothetical protein; Provisional
Probab=82.64 E-value=0.9 Score=42.04 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
++|+||||+|+++++..
T Consensus 10 ~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 10 NSGSGKTTIAKQLQERL 26 (166)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999876
No 398
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=82.59 E-value=5 Score=44.83 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCc
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGL 50 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~ 50 (760)
+|+|||++|.+++.+.... -..++|++..+. ...+.+.+ +.++.
T Consensus 282 ~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~--~~~i~~~~-~~~g~ 325 (509)
T PRK09302 282 TGTGKTLLASKFAEAACRR--GERCLLFAFEES--RAQLIRNA-RSWGI 325 (509)
T ss_pred CCCCHHHHHHHHHHHHHhC--CCcEEEEEecCC--HHHHHHHH-HHcCC
Confidence 6999999999999876533 467889987653 44444433 44543
No 399
>PRK13949 shikimate kinase; Provisional
Probab=82.54 E-value=1.9 Score=39.93 Aligned_cols=18 Identities=50% Similarity=0.488 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
|+|.||||+|+.+++...
T Consensus 9 ~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 9 YMGAGKTTLGKALARELG 26 (169)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 589999999999998864
No 400
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=82.31 E-value=1.2 Score=40.68 Aligned_cols=20 Identities=20% Similarity=0.496 Sum_probs=17.3
Q ss_pred CCCCcHHHHHHHHHHHHhhh
Q 048566 1 MGGIGKTTLVKKVARQAMED 20 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~ 20 (760)
++|.||||+|.+++.....+
T Consensus 31 LSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 31 LSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 47999999999999987644
No 401
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=82.27 E-value=2.9 Score=44.86 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=43.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccc------cchh-hH------HHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLEL------REEV-ES------SRASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~-~~------~~~~~~~~~ 67 (760)
.|+|||||++.+++... .+..+++-+.++. .+.+.+++....=.... ..++ .. ..+..+-++
T Consensus 164 sG~GKSTLL~~I~~~~~----~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEy 239 (433)
T PRK07594 164 PGVGKSTLLAMLCNAPD----ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEF 239 (433)
T ss_pred CCCCccHHHHHhcCCCC----CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999887543 4555555555543 44455555432110000 0011 11 112233444
Q ss_pred HH-cCCcEEEEEECCCCc
Q 048566 68 LR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~-~~~r~LlVlDdv~~~ 84 (760)
++ +|+++|+++||+...
T Consensus 240 frd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 240 FRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHCCCcEEEEEeCHHHH
Confidence 43 379999999999654
No 402
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=82.23 E-value=1.6 Score=44.10 Aligned_cols=30 Identities=23% Similarity=0.173 Sum_probs=20.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
||+||||+|..++.....+ .+ .|.-||...
T Consensus 9 GGVGKTT~~~nLA~~La~~-g~-rVLliD~D~ 38 (268)
T TIGR01281 9 GGIGKSTTSSNLSVAFAKL-GK-RVLQIGCDP 38 (268)
T ss_pred CcCcHHHHHHHHHHHHHhC-CC-eEEEEecCc
Confidence 8999999999988876532 22 355565543
No 403
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=82.20 E-value=0.86 Score=41.13 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=27.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEe-----cCCCCHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEV-----SQIPDIKRIQQEIAEKL 48 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~-----~~~~~~~~~~~~i~~~l 48 (760)
-|+||||+|.++.+= |.- |-.+ +.. ....+.+.+++.+
T Consensus 8 iGCGKTTva~aL~~L------Fg~--wgHvQnDnI~~k-~~~~f~~~~l~~L 50 (168)
T PF08303_consen 8 IGCGKTTVALALSNL------FGE--WGHVQNDNITGK-RKPKFIKAVLELL 50 (168)
T ss_pred CCcCHHHHHHHHHHH------cCC--CCccccCCCCCC-CHHHHHHHHHHHH
Confidence 599999999999865 533 5544 333 5677777888877
No 404
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=82.19 E-value=13 Score=37.78 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=68.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCC-HHHHHHHHHHHhCccccc-----hhhHHHHHHHHHHHHcC----
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPD-IKRIQQEIAEKLGLELRE-----EVESSRASRIFERLRNE---- 71 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l~~~---- 71 (760)
.|.|||+|......+.+ ..=+..+-|....... -+-.++.|.+++...... -.-.+....+...|..+
T Consensus 58 rgsgkT~li~~~Ls~~q--~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t 135 (408)
T KOG2228|consen 58 RGSGKTILIDTRLSDIQ--ENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETT 135 (408)
T ss_pred CCCCceEeeHHHHhhHH--hcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCC
Confidence 48999999988887722 2224455555554432 234566677666433221 12234456666666532
Q ss_pred -CcEEEEEECCCCcc-------ccccccccccCCCCCcEEEEeeCCHHHHHHHHHHHh
Q 048566 72 -KKILVVLDNIWKHL-------DLETVGIPFGEDHKGCKLLLTARDRKEAWRLFKMMV 121 (760)
Q Consensus 72 -~r~LlVlDdv~~~~-------~~~~l~~~~~~~~~gs~IlvTTR~~~~a~~Lf~~~a 121 (760)
.++..|+|.+|--. -++-+...--...|-+-|-+||| -+..+++.+++
T Consensus 136 ~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr--ld~lE~LEKRV 191 (408)
T KOG2228|consen 136 SGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR--LDILELLEKRV 191 (408)
T ss_pred CceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc--ccHHHHHHHHH
Confidence 55888888876431 12222222223566778999999 67888888877
No 405
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=81.94 E-value=3.7 Score=43.95 Aligned_cols=79 Identities=28% Similarity=0.422 Sum_probs=42.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccc-------cchhhH------HHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLEL-------REEVES------SRASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~------~~~~~~~~~ 67 (760)
.|+|||||++.+.+... .+..+...+.+.. .+.++.++....=.... .++... ..+..+-++
T Consensus 146 sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAEy 221 (411)
T TIGR03496 146 SGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAEY 221 (411)
T ss_pred CCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999998887543 2344445555543 34555555443311110 011111 112233344
Q ss_pred HH-cCCcEEEEEECCCCc
Q 048566 68 LR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~-~~~r~LlVlDdv~~~ 84 (760)
++ +|+++|+++||+...
T Consensus 222 fr~~G~~Vll~~Dsltr~ 239 (411)
T TIGR03496 222 FRDQGKDVLLLMDSLTRF 239 (411)
T ss_pred HHHCCCCEEEEEeChHHH
Confidence 42 379999999998654
No 406
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=81.90 E-value=3.8 Score=43.99 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=40.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHHHHHHHHHHHhCccc-------cch------hhHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIKRIQQEIAEKLGLEL-------REE------VESSRASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~------~~~~~~~~~~~~ 67 (760)
.|+|||||++.+..... .+.++..-+... ..+.++..+.+..-+... .+. ...+.+..+-+.
T Consensus 164 sGaGKSTLl~~I~g~~~----~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 164 SGVGKSVLLGMITRYTQ----ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIATY 239 (434)
T ss_pred CCCCccHHHHHHhcccC----CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHHHHHHHHH
Confidence 58999999998887543 233323333322 234444444443322111 010 011122223333
Q ss_pred HH-cCCcEEEEEECCCCc
Q 048566 68 LR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~-~~~r~LlVlDdv~~~ 84 (760)
++ +|+++|+++||+...
T Consensus 240 fr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 240 YRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred hhhccCCEEEeecchhHH
Confidence 32 379999999998655
No 407
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=81.50 E-value=1.7 Score=42.48 Aligned_cols=30 Identities=30% Similarity=0.384 Sum_probs=23.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
||+||||+|.+++.-.... =..|+=||++.
T Consensus 11 GGvG~TTltAnLA~aL~~~--G~~VlaID~dp 40 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARL--GESVLAIDLDP 40 (243)
T ss_pred CCCCHHHHHHHHHHHHHHC--CCcEEEEeCCc
Confidence 9999999999999987633 34677787753
No 408
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=81.47 E-value=3.2 Score=40.68 Aligned_cols=29 Identities=17% Similarity=0.321 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVS 32 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~ 32 (760)
||+||||.|..++.....+ -..+.-++..
T Consensus 12 GGvGKSt~a~~la~~l~~~--g~~vl~iD~D 40 (241)
T PRK13886 12 GGVGKSFIAATIAQYKASK--GQKPLCIDTD 40 (241)
T ss_pred CCCcHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 8999999999998876532 2234445543
No 409
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=81.46 E-value=1.3 Score=44.68 Aligned_cols=31 Identities=32% Similarity=0.397 Sum_probs=23.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP 35 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~ 35 (760)
||+||||+|..++...... . .|.-+|+....
T Consensus 11 GGvGKTT~a~nLA~~La~~-G--rVLliD~Dpq~ 41 (264)
T PRK13231 11 GGIGKSTTVSNMAAAYSND-H--RVLVIGCDPKA 41 (264)
T ss_pred CCCcHHHHHHHHhcccCCC-C--EEEEEeEccCc
Confidence 8999999999999987643 3 57777775443
No 410
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=81.46 E-value=3.7 Score=38.74 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
.+|+||||+|+.++...
T Consensus 11 ~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 11 GPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 37999999999998764
No 411
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=81.34 E-value=1 Score=38.89 Aligned_cols=17 Identities=47% Similarity=0.567 Sum_probs=14.5
Q ss_pred CCcHHHHHHHHHHHHhh
Q 048566 3 GIGKTTLVKKVARQAME 19 (760)
Q Consensus 3 GiGKTtLA~~~~~~~~~ 19 (760)
|.||||++|.+++...+
T Consensus 25 GaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 25 GAGKTTFVRGLARALGI 41 (123)
T ss_dssp TSSHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHcCC
Confidence 89999999999987643
No 412
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=81.34 E-value=3.9 Score=42.63 Aligned_cols=31 Identities=10% Similarity=0.154 Sum_probs=19.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI 34 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~ 34 (760)
.|.||+++|+.+.+.... .-...+.|++...
T Consensus 38 ~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~ 68 (326)
T PRK11608 38 RGTGKELIASRLHYLSSR--WQGPFISLNCAAL 68 (326)
T ss_pred CCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCC
Confidence 599999999999864321 1123456666653
No 413
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=81.21 E-value=5.8 Score=42.45 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=47.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCcccc-------chhhHH------HHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELR-------EEVESS------RASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-------~~~~~~------~~~~~~~~ 67 (760)
+|+|||+|+.+++++.. -+.++++-+.++. ...++.+++.+.=..+.. ++.... .+-.+-++
T Consensus 149 aGvgk~~L~~~ia~~~~----~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~AltiAEy 224 (436)
T PRK02118 149 SGEPYNALLARIALQAE----ADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAEK 224 (436)
T ss_pred CCCCHHHHHHHHHHhhC----CCeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999998865 2567788887765 444555555443211110 111111 12233444
Q ss_pred HHc-C-CcEEEEEECCCCc
Q 048566 68 LRN-E-KKILVVLDNIWKH 84 (760)
Q Consensus 68 l~~-~-~r~LlVlDdv~~~ 84 (760)
++. + +.+|+++||+...
T Consensus 225 frd~g~~~VLli~DdlTr~ 243 (436)
T PRK02118 225 FALEGKKKVLVLLTDMTNF 243 (436)
T ss_pred HHhcCCCCEEEeccCchHH
Confidence 442 3 9999999999765
No 414
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=81.18 E-value=3.5 Score=44.15 Aligned_cols=80 Identities=21% Similarity=0.305 Sum_probs=41.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcccc------chh-hHH------HHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR------EEV-ESS------RASRIFERL 68 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~-~~~------~~~~~~~~l 68 (760)
.|+|||||++.++..... ..+++...-.+...+.++.++.+..-+.... .++ ... .+..+-+++
T Consensus 149 sG~GKTtLl~~I~~~~~~---~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyf 225 (418)
T TIGR03498 149 SGVGKSTLLSMLARNTDA---DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYF 225 (418)
T ss_pred CCCChHHHHHHHhCCCCC---CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 599999999888876432 2233332222233455555554433221110 111 111 122344444
Q ss_pred H-cCCcEEEEEECCCCc
Q 048566 69 R-NEKKILVVLDNIWKH 84 (760)
Q Consensus 69 ~-~~~r~LlVlDdv~~~ 84 (760)
+ +|+++|+++||+...
T Consensus 226 rd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 226 RDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHcCCCEEEeccchhHH
Confidence 3 379999999998654
No 415
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=81.17 E-value=2.7 Score=38.47 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=16.5
Q ss_pred CCCcHHHHHHHHHHHHhhh
Q 048566 2 GGIGKTTLVKKVARQAMED 20 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~ 20 (760)
.|+||||+++.++......
T Consensus 1 ~GsGKStvg~~lA~~L~~~ 19 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRP 19 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSE
T ss_pred CCCcHHHHHHHHHHHhCCC
Confidence 5999999999999998633
No 416
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.17 E-value=0.91 Score=26.90 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=11.6
Q ss_pred ccccCeeecCCCccccc
Q 048566 702 FAQLRSLSLGNLPEVTS 718 (760)
Q Consensus 702 l~~L~~L~l~~c~~L~~ 718 (760)
+|+|+.|+|++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 35677777777777654
No 417
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=80.96 E-value=2.1 Score=43.29 Aligned_cols=30 Identities=23% Similarity=0.192 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
||+||||+|..++.....+ .+ .++-||...
T Consensus 11 GGVGKTT~~~nLA~~la~~-G~-kVLliD~Dp 40 (270)
T PRK13185 11 GGIGKSTTSSNLSAAFAKL-GK-KVLQIGCDP 40 (270)
T ss_pred CCCCHHHHHHHHHHHHHHC-CC-eEEEEeccC
Confidence 8999999999999887632 22 355565543
No 418
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=80.88 E-value=5.4 Score=44.57 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=28.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEI 44 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 44 (760)
+|+|||++|.++......+ +-..++|++..+ +..++.+.+
T Consensus 40 pGsGKT~l~~qf~~~~~~~-~ge~~lyis~ee--~~~~i~~~~ 79 (509)
T PRK09302 40 AGTGKTLFALQFLVNGIKR-FDEPGVFVTFEE--SPEDIIRNV 79 (509)
T ss_pred CCCCHHHHHHHHHHHHHHh-cCCCEEEEEccC--CHHHHHHHH
Confidence 6999999999988765532 135689998776 444555554
No 419
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=80.85 E-value=20 Score=37.23 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
.|+||||+|+.++...-
T Consensus 30 ~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 30 KGIGKTAFARFAAQALL 46 (325)
T ss_pred CCCCHHHHHHHHHHHHc
Confidence 69999999999998753
No 420
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=80.82 E-value=7.8 Score=35.00 Aligned_cols=17 Identities=24% Similarity=0.556 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|.||||+|+.+.....
T Consensus 8 ~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 8 SGSGKSTIARALEEKLF 24 (149)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 79999999999998865
No 421
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=80.82 E-value=1.9 Score=43.50 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=20.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVS 32 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~ 32 (760)
||+||||+|..++.....+ .+ .++-||..
T Consensus 9 GGvGKTT~a~nLA~~la~~-G~-rvlliD~D 37 (267)
T cd02032 9 GGIGKSTTSSNLSVALAKR-GK-KVLQIGCD 37 (267)
T ss_pred CCCCHHHHHHHHHHHHHHC-CC-cEEEEecC
Confidence 8999999999999887632 33 34455543
No 422
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=80.64 E-value=4.9 Score=43.88 Aligned_cols=79 Identities=24% Similarity=0.344 Sum_probs=44.8
Q ss_pred CCCcHHHHH-HHHHHHHhhhcCCCe-EEEEEecCCC-CHHHHHHHHHHHhCcccc------chh-hHH------HHHHHH
Q 048566 2 GGIGKTTLV-KKVARQAMEDKLFDM-VVFSEVSQIP-DIKRIQQEIAEKLGLELR------EEV-ESS------RASRIF 65 (760)
Q Consensus 2 gGiGKTtLA-~~~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~-~~~------~~~~~~ 65 (760)
.|+|||||| .++.++. .-+. ++++-+.++. .+.++.+.+...=..... .++ ... ....+-
T Consensus 171 ~g~GKt~Lal~~i~~~~----~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~aiA 246 (502)
T PRK13343 171 RQTGKTAIAIDAIINQK----DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAIA 246 (502)
T ss_pred CCCCccHHHHHHHHhhc----CCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHHHHHHH
Confidence 589999996 5566542 2455 3778787765 456666666543211110 111 100 112233
Q ss_pred HHHH-cCCcEEEEEECCCCc
Q 048566 66 ERLR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 66 ~~l~-~~~r~LlVlDdv~~~ 84 (760)
++++ +|+++|+|+||+...
T Consensus 247 Eyfrd~G~~VLlv~DdlTr~ 266 (502)
T PRK13343 247 EYFRDQGQDALIVYDDLSKH 266 (502)
T ss_pred HHHHhCCCCEEEEecchHHH
Confidence 3443 479999999999765
No 423
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=80.62 E-value=2.2 Score=43.45 Aligned_cols=30 Identities=33% Similarity=0.365 Sum_probs=21.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
||+||||+|..++.-.... .+ .++-||...
T Consensus 10 GGVGKTT~a~nLA~~La~~-G~-rVLliD~Dp 39 (279)
T PRK13230 10 GGIGKSTTVCNIAAALAES-GK-KVLVVGCDP 39 (279)
T ss_pred CCCcHHHHHHHHHHHHHhC-CC-EEEEEeeCC
Confidence 8999999999999887633 22 466666543
No 424
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=80.62 E-value=1.6 Score=44.35 Aligned_cols=33 Identities=24% Similarity=0.193 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP 35 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~ 35 (760)
||+||||+|..++.-...+..+ .+.-||.....
T Consensus 11 GGVGKTT~a~nLA~~La~~~G~-rvLliD~Dpq~ 43 (275)
T PRK13233 11 GGIGKSTTTQNTAAAMAYFHDK-KVFIHGCDPKA 43 (275)
T ss_pred CCCcHHHHHHHHHHHHHHhcCC-eEEEeccCcCc
Confidence 8999999999988887632122 35566654433
No 425
>PRK05973 replicative DNA helicase; Provisional
Probab=80.60 E-value=3.9 Score=40.05 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=26.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEI 44 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 44 (760)
+|+|||++|.+++...... -..+++++.... ..++.+.+
T Consensus 73 PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 73 PGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC--HHHHHHHH
Confidence 7999999999998876532 345777776653 34444443
No 426
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=80.43 E-value=5.9 Score=36.68 Aligned_cols=16 Identities=44% Similarity=0.744 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
.|+|||||+++++.+.
T Consensus 13 SG~GKsTl~k~L~~~~ 28 (191)
T COG0194 13 SGVGKSTLVKALLEDD 28 (191)
T ss_pred CCCCHHHHHHHHHhhc
Confidence 6999999999999886
No 427
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=80.42 E-value=5.1 Score=43.96 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=44.0
Q ss_pred CCCcHHHHH-HHHHHHHhhhcCCCe-EEEEEecCCC-CHHHHHHHHHHHhCcccc------chh-hHH------HHHHHH
Q 048566 2 GGIGKTTLV-KKVARQAMEDKLFDM-VVFSEVSQIP-DIKRIQQEIAEKLGLELR------EEV-ESS------RASRIF 65 (760)
Q Consensus 2 gGiGKTtLA-~~~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~------~~~-~~~------~~~~~~ 65 (760)
.|+|||+|| ..+.++. .-+. ++++-+.++. .+.++.+.+...=..... .++ ... .+..+-
T Consensus 171 ~g~GKt~lal~~i~~~~----~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~tiA 246 (502)
T PRK09281 171 RQTGKTAIAIDTIINQK----GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMG 246 (502)
T ss_pred CCCCchHHHHHHHHHhc----CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 599999996 4444443 2355 4788887765 445666665543211110 111 111 112233
Q ss_pred HHHH-cCCcEEEEEECCCCc
Q 048566 66 ERLR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 66 ~~l~-~~~r~LlVlDdv~~~ 84 (760)
++++ +|+++|+|+||+...
T Consensus 247 Eyfrd~G~~VLli~DdlTr~ 266 (502)
T PRK09281 247 EYFMDNGKDALIVYDDLSKQ 266 (502)
T ss_pred HHHHHcCCCEEEEecCchHH
Confidence 3333 379999999999765
No 428
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=80.40 E-value=30 Score=35.37 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=27.4
Q ss_pred CCcEEEEEECCCCcc--ccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKHL--DLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+.+=++|+||++... ..+.+...+.....++.+|++|.+.
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~ 130 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNI 130 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCCh
Confidence 477788889887663 3556666666666677777777655
No 429
>PRK00131 aroK shikimate kinase; Reviewed
Probab=80.16 E-value=1.2 Score=41.44 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
++|.||||+|++++....
T Consensus 12 ~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 12 FMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 589999999999998863
No 430
>PRK13947 shikimate kinase; Provisional
Probab=80.13 E-value=1.2 Score=41.33 Aligned_cols=18 Identities=44% Similarity=0.488 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
|+|+||||+|+.+++...
T Consensus 9 ~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 9 FMGTGKTTVGKRVATTLS 26 (171)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 689999999999998864
No 431
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=80.12 E-value=1.5 Score=35.82 Aligned_cols=18 Identities=44% Similarity=0.709 Sum_probs=16.1
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 048566 2 GGIGKTTLVKKVARQAME 19 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~ 19 (760)
+|+||||+|..++.....
T Consensus 8 ~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 8 GGVGKTTLAANLAAALAK 25 (99)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 699999999999998763
No 432
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=80.10 E-value=5.1 Score=37.56 Aligned_cols=111 Identities=20% Similarity=0.168 Sum_probs=56.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEE---ecCCCCHHHH------HHHHHHHhCccccc------h-hhHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSE---VSQIPDIKRI------QQEIAEKLGLELRE------E-VESSRASRIF 65 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~---~~~~~~~~~~------~~~i~~~l~~~~~~------~-~~~~~~~~~~ 65 (760)
.|.|||||++.++.... ...+.++++ +.. .+.... ..++++.++..... - .-+...-.+.
T Consensus 34 nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~la 109 (180)
T cd03214 34 NGAGKSTLLKTLAGLLK---PSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLLA 109 (180)
T ss_pred CCCCHHHHHHHHhCCCC---CCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHH
Confidence 59999999999987643 234544443 221 121111 11244554432110 0 0111223344
Q ss_pred HHHHcCCcEEEEEECCCCccc---cccccccccCC-CC-CcEEEEeeCCHHHHHHHH
Q 048566 66 ERLRNEKKILVVLDNIWKHLD---LETVGIPFGED-HK-GCKLLLTARDRKEAWRLF 117 (760)
Q Consensus 66 ~~l~~~~r~LlVlDdv~~~~~---~~~l~~~~~~~-~~-gs~IlvTTR~~~~a~~Lf 117 (760)
..+.. .+-++++|.-...-+ .+.+...+... .. |.-||++|.+.++..++.
T Consensus 110 ral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~ 165 (180)
T cd03214 110 RALAQ-EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYA 165 (180)
T ss_pred HHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 44554 788999999764422 22232222221 12 556899998876665554
No 433
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=79.91 E-value=1.2 Score=40.25 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
.+|+||||+|+.+....
T Consensus 7 ~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 7 VSGSGKSTVGKALAERL 23 (150)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 47999999999998763
No 434
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=79.85 E-value=18 Score=37.53 Aligned_cols=18 Identities=44% Similarity=0.492 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 048566 2 GGIGKTTLVKKVARQAME 19 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~ 19 (760)
+|.|||-||++||..-..
T Consensus 254 PGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 254 PGTGKTLLAKAVATECGT 271 (491)
T ss_pred CCCcHHHHHHHHHHhhcC
Confidence 799999999999988653
No 435
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=79.75 E-value=4.4 Score=43.42 Aligned_cols=79 Identities=24% Similarity=0.406 Sum_probs=41.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccc------c-chhhH------HHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLEL------R-EEVES------SRASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~-~~~~~------~~~~~~~~~ 67 (760)
.|+|||||++.+++.... +..+..-+.+.. .+.++.++.+.+-+... . ++... ..+..+-++
T Consensus 146 sG~GKTtLl~~i~~~~~~----~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAEy 221 (413)
T TIGR03497 146 SGVGKSTLLGMIARNAKA----DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAEY 221 (413)
T ss_pred CCCCHHHHHHHHhCCCCC----CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 599999999988876542 222222234333 44455554443211110 0 11111 112233344
Q ss_pred HH-cCCcEEEEEECCCCc
Q 048566 68 LR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~-~~~r~LlVlDdv~~~ 84 (760)
++ +|+++|+++||+...
T Consensus 222 fr~~G~~Vll~~Dsltr~ 239 (413)
T TIGR03497 222 FRDQGKDVLLMMDSVTRF 239 (413)
T ss_pred HHHCCCCEEEEEcCcHHH
Confidence 43 479999999999654
No 436
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=79.72 E-value=5.3 Score=43.14 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=41.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHH--hCcc----ccchh-h------HHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEK--LGLE----LREEV-E------SSRASRIFERL 68 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~--l~~~----~~~~~-~------~~~~~~~~~~l 68 (760)
.|+|||||++.+....... .+++++.-.+...+.++.++.+.. +... ...++ . ...+..+-+++
T Consensus 167 sG~GKStLl~~I~~~~~~~---~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAEyf 243 (438)
T PRK07721 167 SGVGKSTLMGMIARNTSAD---LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEYF 243 (438)
T ss_pred CCCCHHHHHHHHhcccCCC---eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999888765421 245554323333455544432211 1110 00111 1 11122333444
Q ss_pred H-cCCcEEEEEECCCCc
Q 048566 69 R-NEKKILVVLDNIWKH 84 (760)
Q Consensus 69 ~-~~~r~LlVlDdv~~~ 84 (760)
+ +|+++|+++||+...
T Consensus 244 r~~g~~Vll~~Dsltr~ 260 (438)
T PRK07721 244 RDQGLNVMLMMDSVTRV 260 (438)
T ss_pred HHCCCcEEEEEeChHHH
Confidence 3 479999999999654
No 437
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=79.57 E-value=5.1 Score=37.77 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=25.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC-CCHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI-PDIKRIQQEIAE 46 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~ 46 (760)
-|.||||+++.+++.....++ . +-++.... ....+..++++.
T Consensus 5 DGsGKtT~~~~L~~~l~~~~~--~-~~~~~~~~~~~~g~~ir~~l~ 47 (186)
T PF02223_consen 5 DGSGKTTQIRLLAEALKEKGY--K-VIITFPPGSTPIGELIRELLR 47 (186)
T ss_dssp TTSSHHHHHHHHHHHHHHTTE--E-EEEEESSTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCC--c-ccccCCCCCChHHHHHHHHHh
Confidence 599999999999999875422 2 23333222 234455555555
No 438
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=79.57 E-value=4.3 Score=41.62 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=49.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCcccc-----c--h----------hhHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELR-----E--E----------VESSRASR 63 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~--~----------~~~~~~~~ 63 (760)
+|+|||-+.+++.+.... .|=...+|.-+.++. .-.+++.++.+.--.+.. + + .-.-.++.
T Consensus 156 AGVGKTVl~~ELI~Nia~-~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RValtGlT~AEy 234 (468)
T COG0055 156 AGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVALTGLTMAEY 234 (468)
T ss_pred CCccceeeHHHHHHHHHH-HcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeehhhhhhHHHH
Confidence 699999999999999873 333457788887654 335677777654211100 0 0 01112334
Q ss_pred HHHHHHcCCcEEEEEECCCCc
Q 048566 64 IFERLRNEKKILVVLDNIWKH 84 (760)
Q Consensus 64 ~~~~l~~~~r~LlVlDdv~~~ 84 (760)
.+... ++.+|+.+||+..-
T Consensus 235 fRD~~--gqdVLlFIDNIfRf 253 (468)
T COG0055 235 FRDEE--GQDVLLFIDNIFRF 253 (468)
T ss_pred hhccc--CCeEEEEehhhhHH
Confidence 44332 69999999999643
No 439
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=79.56 E-value=2 Score=42.80 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVS 32 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~ 32 (760)
||+||||+|..++.....++ ..++-||..
T Consensus 10 GGvGKTt~a~~LA~~la~~g--~~VlliD~D 38 (251)
T TIGR01969 10 GGTGKTTITANLGVALAKLG--KKVLALDAD 38 (251)
T ss_pred CCCcHHHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 89999999999998766332 246666654
No 440
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=79.54 E-value=2.2 Score=43.22 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=20.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVS 32 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~ 32 (760)
||+||||+|..++.-.... .+ .|.-||..
T Consensus 10 GGVGKTT~~~nLA~~La~~-G~-rVLlID~D 38 (274)
T PRK13235 10 GGIGKSTTTQNTVAGLAEM-GK-KVMVVGCD 38 (274)
T ss_pred CCccHHHHHHHHHHHHHHC-CC-cEEEEecC
Confidence 8999999999999887632 23 35555543
No 441
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.42 E-value=0.095 Score=49.49 Aligned_cols=88 Identities=13% Similarity=-0.011 Sum_probs=74.2
Q ss_pred hhhhhhccCCeeEecCCCCCC-ccccccccccceeecccCcccccchhhhcCCCCCEEeccccccccccCcccccCCCCC
Q 048566 368 SSIDLLVNLHTLCLDQSALGD-IAIIGKLKNLEVLSFLMSDIMQLPEELGQLNKLRLLDLTNCFHLKVIAPNLISSLTRL 446 (760)
Q Consensus 368 ~~i~~l~~L~~L~l~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L 446 (760)
..+.....-+.||++.+.+.. -..++.+..|..|+++.+.+..+|.+.+.+..++++++..| +.+..|.+ .++++++
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~~k~~~~ 113 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-QKKEPHP 113 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-ccccCCc
Confidence 356667788999999998655 35677888999999999999999999999999999998876 78888876 7899999
Q ss_pred CEEEccccccc
Q 048566 447 EELYMGNCFIE 457 (760)
Q Consensus 447 ~~L~l~~~~~~ 457 (760)
++++.-++.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 99998877654
No 442
>PRK13695 putative NTPase; Provisional
Probab=79.30 E-value=2.2 Score=39.78 Aligned_cols=27 Identities=41% Similarity=0.485 Sum_probs=19.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFS 29 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv 29 (760)
+|+|||||++.+++.... ..|..+.|+
T Consensus 9 ~G~GKTTll~~i~~~l~~-~G~~~~g~~ 35 (174)
T PRK13695 9 PGVGKTTLVLKIAELLKE-EGYKVGGFY 35 (174)
T ss_pred CCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 799999999999988653 335544454
No 443
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=79.29 E-value=5.4 Score=42.79 Aligned_cols=80 Identities=21% Similarity=0.302 Sum_probs=44.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcccc-------chhh------HHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR-------EEVE------SSRASRIFERL 68 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~------~~~~~~~~~~l 68 (760)
.|.|||||++.++..... ...++...-.+...+.+.+++.+..-+.... ++.. ...+..+-+++
T Consensus 165 sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyf 241 (432)
T PRK06793 165 SGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYF 241 (432)
T ss_pred CCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 599999999999887542 1234433222335666666655544222110 1111 11122333344
Q ss_pred H-cCCcEEEEEECCCCc
Q 048566 69 R-NEKKILVVLDNIWKH 84 (760)
Q Consensus 69 ~-~~~r~LlVlDdv~~~ 84 (760)
+ +|+++||++||+...
T Consensus 242 r~~G~~VLlilDslTr~ 258 (432)
T PRK06793 242 RDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHcCCcEEEEecchHHH
Confidence 3 379999999999765
No 444
>PRK14532 adenylate kinase; Provisional
Probab=79.28 E-value=5.9 Score=37.40 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
++|.||||+|+.++...
T Consensus 8 ~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 8 PPAAGKGTQAKRLVEER 24 (188)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 48999999999998654
No 445
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=79.26 E-value=2.6 Score=40.36 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=47.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCcccc---chhhHHHHHHHHHHHHcCCcEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELR---EEVESSRASRIFERLRNEKKILVVL 78 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~~~l~~~~r~LlVl 78 (760)
+|.||||++..+..... ....+.|+...-......+.++...-..... ..........+.+.... +++=+|+
T Consensus 24 ~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~-~~~nii~ 98 (199)
T PF06414_consen 24 PGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIE-NRYNIIF 98 (199)
T ss_dssp TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHH-CT--EEE
T ss_pred CCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-cCCCEEE
Confidence 69999999999877642 3556677654321111112222222111111 11112234555555554 7788888
Q ss_pred ECCCCc-cccccccccccCCCCCcEEEEeeCCHHHHHH
Q 048566 79 DNIWKH-LDLETVGIPFGEDHKGCKLLLTARDRKEAWR 115 (760)
Q Consensus 79 Ddv~~~-~~~~~l~~~~~~~~~gs~IlvTTR~~~~a~~ 115 (760)
|.+-.. +....+...+...|-...|++..-+++.|+.
T Consensus 99 E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~ 136 (199)
T PF06414_consen 99 EGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIE 136 (199)
T ss_dssp E--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHH
T ss_pred ecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHH
Confidence 987643 3333344444444433444444444444443
No 446
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=79.22 E-value=1.8 Score=41.27 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSE 30 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~ 30 (760)
+|.|||.||.+.+-+.-.++.|+.++++.
T Consensus 28 AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 28 AGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 79999999999998876678899988874
No 447
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=79.08 E-value=10 Score=40.11 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=33.1
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEec-CCCCHHHHHHHHHHHhCccc
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVS-QIPDIKRIQQEIAEKLGLEL 52 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~ 52 (760)
=|.||||-|-++++..+. +. ..+.-|.+. .++-..+-++.++++++.+.
T Consensus 109 QGsGKTTt~~KLA~~lkk-~~-~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 109 QGSGKTTTAGKLAKYLKK-KG-KKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred cCCChHhHHHHHHHHHHH-cC-CceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 489999999999998874 22 234445443 23455667778888876654
No 448
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=79.05 E-value=2.9 Score=41.50 Aligned_cols=31 Identities=29% Similarity=0.313 Sum_probs=23.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQI 34 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~ 34 (760)
||+||||+|..++...... =..++-||+...
T Consensus 11 GGvGKTt~a~nla~~la~~--g~~VlliD~D~q 41 (246)
T TIGR03371 11 GGVGKTTLTANLASALKLL--GEPVLAIDLDPQ 41 (246)
T ss_pred CCccHHHHHHHHHHHHHhC--CCcEEEEeCCCc
Confidence 8999999999999887632 235778887653
No 449
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=79.01 E-value=2.3 Score=39.26 Aligned_cols=17 Identities=53% Similarity=0.729 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|+||||+++.+++..+
T Consensus 8 pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 8 PGVGKTTLLKKVIEELK 24 (168)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 79999999999998875
No 450
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=78.83 E-value=4.2 Score=38.95 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIA 45 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 45 (760)
=|+||||.++.++.....++ + .++|..-.....+-+..++++
T Consensus 12 DGaGKTT~~~~L~~~l~~~g-~-~v~~trEP~~~~ige~iR~~l 53 (208)
T COG0125 12 DGAGKTTQAELLKERLEERG-I-KVVLTREPGGTPIGEKIRELL 53 (208)
T ss_pred CCCCHHHHHHHHHHHHHHcC-C-eEEEEeCCCCChHHHHHHHHH
Confidence 49999999999999988543 3 555554443333444444443
No 451
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=78.73 E-value=34 Score=36.46 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
.+|.|||++..+++|...
T Consensus 243 PPGTGKSS~IaAmAn~L~ 260 (457)
T KOG0743|consen 243 PPGTGKSSFIAAMANYLN 260 (457)
T ss_pred CCCCCHHHHHHHHHhhcC
Confidence 379999999999999865
No 452
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=78.69 E-value=3 Score=37.19 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
.|+|||||++.+.+.... +.+...+..+...
T Consensus 9 ~~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 9 KNSGKTTLIRKLINELKR-RGYRVAVIKHTDH 39 (140)
T ss_dssp TTSSHHHHHHHHHHHHHH-TT--EEEEEE-ST
T ss_pred CCCCHHHHHHHHHHHHhH-cCCceEEEEEccC
Confidence 489999999999999873 4566666777665
No 453
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=78.37 E-value=1.5 Score=40.99 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
++|.||||+|+++.....
T Consensus 10 ~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 10 GSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCCCCHHHHHHHHHHhhC
Confidence 479999999999987753
No 454
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=78.32 E-value=1.6 Score=41.59 Aligned_cols=18 Identities=44% Similarity=0.586 Sum_probs=16.2
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 048566 2 GGIGKTTLVKKVARQAME 19 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~ 19 (760)
+|.||||+|+++......
T Consensus 8 sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 8 SGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp TTSSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhCc
Confidence 699999999999998763
No 455
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=78.26 E-value=3.5 Score=37.93 Aligned_cols=109 Identities=15% Similarity=0.182 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC--CHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP--DIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLD 79 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlD 79 (760)
.|.|||||.+.++.... ...+.++++-.... +.... ..+.++.-.+-..-+...-.+-..+.. ++-++++|
T Consensus 35 nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~qLS~G~~qrl~laral~~-~p~illlD 107 (163)
T cd03216 35 NGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDA---RRAGIAMVYQLSVGERQMVEIARALAR-NARLLILD 107 (163)
T ss_pred CCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHH---HhcCeEEEEecCHHHHHHHHHHHHHhc-CCCEEEEE
Confidence 59999999999987643 23555555422111 11111 111122111111111222234444443 77888899
Q ss_pred CCCCccc---cccccccccC-CCCCcEEEEeeCCHHHHHHHH
Q 048566 80 NIWKHLD---LETVGIPFGE-DHKGCKLLLTARDRKEAWRLF 117 (760)
Q Consensus 80 dv~~~~~---~~~l~~~~~~-~~~gs~IlvTTR~~~~a~~Lf 117 (760)
+-...-+ .+.+...+.. ...|.-||++|.+.++..++.
T Consensus 108 EP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~ 149 (163)
T cd03216 108 EPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIA 149 (163)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 9765422 2222222221 123556888888875554443
No 456
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=78.26 E-value=6.7 Score=34.78 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=16.3
Q ss_pred CCCcHHHHHHHHHHHHhhh
Q 048566 2 GGIGKTTLVKKVARQAMED 20 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~ 20 (760)
.|.||||+|++++.....+
T Consensus 4 sG~GKStvg~~lA~~lg~~ 22 (161)
T COG3265 4 SGSGKSTVGSALAERLGAK 22 (161)
T ss_pred CccCHHHHHHHHHHHcCCc
Confidence 5999999999999987633
No 457
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=78.21 E-value=11 Score=37.70 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHc-CCcEEEEEE
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELREEVESSRASRIFERLRN-EKKILVVLD 79 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~~r~LlVlD 79 (760)
+|+||||+++.+......+ =..+.+++..... ....-++...+.++.+.........+....+.+.. ++.-++++|
T Consensus 84 ~g~GKTtl~~~l~~~l~~~--~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~D~ViID 161 (270)
T PRK06731 84 TGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILID 161 (270)
T ss_pred CCCcHHHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6999999999998776422 1356677765332 22233334444455443322222233334444442 245788888
Q ss_pred CCCCc
Q 048566 80 NIWKH 84 (760)
Q Consensus 80 dv~~~ 84 (760)
..-..
T Consensus 162 t~Gr~ 166 (270)
T PRK06731 162 TAGKN 166 (270)
T ss_pred CCCCC
Confidence 87543
No 458
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=78.16 E-value=1.6 Score=44.22 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
||+||||+|..++.-..
T Consensus 10 GGVGKTT~a~nLA~~La 26 (273)
T PRK13232 10 GGIGKSTTTQNLTAALS 26 (273)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 89999999999988775
No 459
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=78.14 E-value=0.81 Score=40.82 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=22.5
Q ss_pred CcEEEEEECCCCcc--ccccccccccC-CCCCcEEEEeeCCH
Q 048566 72 KKILVVLDNIWKHL--DLETVGIPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 72 ~r~LlVlDdv~~~~--~~~~l~~~~~~-~~~gs~IlvTTR~~ 110 (760)
+.--++++|++... ....+...+.. .....|+|.||+..
T Consensus 69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 44456788887753 22233333332 25677999999976
No 460
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=78.14 E-value=1.8 Score=45.52 Aligned_cols=94 Identities=14% Similarity=0.169 Sum_probs=46.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
.|.|||.|+-.+|+...+++. .....-+...++-+.+..-.. ..+.+..+.+.+. ++..||+||..
T Consensus 71 vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~~---~~~~l~~va~~l~-~~~~lLcfDEF 136 (362)
T PF03969_consen 71 VGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLRG---QDDPLPQVADELA-KESRLLCFDEF 136 (362)
T ss_pred CCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHhC---CCccHHHHHHHHH-hcCCEEEEeee
Confidence 489999999999998654211 011111233333322211111 1122344555665 37779999997
Q ss_pred CCccccccc--cccccC-CCCCcEEEEeeCCH
Q 048566 82 WKHLDLETV--GIPFGE-DHKGCKLLLTARDR 110 (760)
Q Consensus 82 ~~~~~~~~l--~~~~~~-~~~gs~IlvTTR~~ 110 (760)
.-.+.-+++ ..-|.. ...|. |+|+|-|.
T Consensus 137 ~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 137 QVTDIADAMILKRLFEALFKRGV-VLVATSNR 167 (362)
T ss_pred eccchhHHHHHHHHHHHHHHCCC-EEEecCCC
Confidence 544322221 111111 23455 67777665
No 461
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=78.02 E-value=34 Score=36.50 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=36.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.|||-||++|+-+-... | .+++. ..+......+. +..+..+++.-+..+...|++|++
T Consensus 195 pgtGKtmL~~aiAsE~~at--f-----f~iSa------------ssLtsK~~Ge~-eK~vralf~vAr~~qPsvifidEi 254 (428)
T KOG0740|consen 195 PGTGKTMLAKAIATESGAT--F-----FNISA------------SSLTSKYVGES-EKLVRALFKVARSLQPSVIFIDEI 254 (428)
T ss_pred CCCchHHHHHHHHhhhcce--E-----eeccH------------HHhhhhccChH-HHHHHHHHHHHHhcCCeEEEechh
Confidence 6999999999999987643 2 23221 11111111111 233444444444457888888888
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 255 dsl 257 (428)
T KOG0740|consen 255 DSL 257 (428)
T ss_pred HHH
Confidence 653
No 462
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=78.00 E-value=2.7 Score=41.45 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=20.9
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEe
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEV 31 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~ 31 (760)
++|.||||+++.+.+..... -..++-|+.
T Consensus 4 paGSGKTT~~~~~~~~~~~~--~~~~~~vNL 32 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLESN--GRDVYIVNL 32 (238)
T ss_dssp STTSSHHHHHHHHHHHHTTT---S-EEEEE-
T ss_pred CCCCCHHHHHHHHHHHHHhc--cCCceEEEc
Confidence 68999999999999987643 344556664
No 463
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=77.92 E-value=1.7 Score=42.11 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
||+||||+|..++......+ . .+.-||...
T Consensus 9 GGvGKTt~~~nLA~~la~~G-~-rvLliD~D~ 38 (212)
T cd02117 9 GGIGKSTTSQNLSAALAEMG-K-KVLQVGCDP 38 (212)
T ss_pred CcCcHHHHHHHHHHHHHHCC-C-cEEEEeCCC
Confidence 89999999999998876432 2 355566543
No 464
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=77.89 E-value=1.5 Score=38.55 Aligned_cols=17 Identities=41% Similarity=0.401 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
-|.||||+++.+++...
T Consensus 31 lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 31 LGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCHHHHHHHHHHHcC
Confidence 49999999999998864
No 465
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=77.80 E-value=13 Score=39.25 Aligned_cols=78 Identities=24% Similarity=0.270 Sum_probs=46.2
Q ss_pred CCCcHH-HHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEE
Q 048566 2 GGIGKT-TLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLD 79 (760)
Q Consensus 2 gGiGKT-tLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlD 79 (760)
.||||| |||+..++.....+ =..|..|+...-. ...+-++.-++-++.+...-........-...+.. . =+|..|
T Consensus 212 TGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~-~-d~ILVD 288 (407)
T COG1419 212 TGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD-C-DVILVD 288 (407)
T ss_pred CCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc-C-CEEEEe
Confidence 599999 55655555541222 2457788776533 55667777778888887654444445555555552 4 344456
Q ss_pred CCC
Q 048566 80 NIW 82 (760)
Q Consensus 80 dv~ 82 (760)
-+.
T Consensus 289 TaG 291 (407)
T COG1419 289 TAG 291 (407)
T ss_pred CCC
Confidence 553
No 466
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.64 E-value=1.9 Score=25.39 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=11.3
Q ss_pred CCceEEEecCCCCCCChhh
Q 048566 351 KKLRVLDFTRMQFSSFPSS 369 (760)
Q Consensus 351 ~~Lr~L~l~~~~~~~lp~~ 369 (760)
++|++|++.+|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666543
No 467
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.64 E-value=1.9 Score=25.39 Aligned_cols=19 Identities=42% Similarity=0.646 Sum_probs=11.3
Q ss_pred CCceEEEecCCCCCCChhh
Q 048566 351 KKLRVLDFTRMQFSSFPSS 369 (760)
Q Consensus 351 ~~Lr~L~l~~~~~~~lp~~ 369 (760)
++|++|++.+|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666543
No 468
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=77.54 E-value=3.1 Score=48.87 Aligned_cols=63 Identities=29% Similarity=0.347 Sum_probs=35.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||++|+++++.... .| +.++.+. +..... .+ ....+..+++........+|++|++
T Consensus 221 pGtGKT~laraia~~~~~--~~---i~i~~~~----------i~~~~~----g~-~~~~l~~lf~~a~~~~p~il~iDEi 280 (733)
T TIGR01243 221 PGTGKTLLAKAVANEAGA--YF---ISINGPE----------IMSKYY----GE-SEERLREIFKEAEENAPSIIFIDEI 280 (733)
T ss_pred CCCChHHHHHHHHHHhCC--eE---EEEecHH----------Hhcccc----cH-HHHHHHHHHHHHHhcCCcEEEeehh
Confidence 699999999999987642 12 2333211 111110 11 1223444555444457789999998
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 281 d~l 283 (733)
T TIGR01243 281 DAI 283 (733)
T ss_pred hhh
Confidence 653
No 469
>PRK04040 adenylate kinase; Provisional
Probab=77.51 E-value=1.6 Score=41.18 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
++|+||||+|+.+.+...
T Consensus 10 ~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 10 VPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 589999999999998763
No 470
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=77.51 E-value=5.9 Score=39.11 Aligned_cols=79 Identities=23% Similarity=0.223 Sum_probs=42.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC-----CCCHHHHHHHHHHHhCcccc------chhh-HHHHH-HHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ-----IPDIKRIQQEIAEKLGLELR------EEVE-SSRAS-RIFERL 68 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~------~~~~-~~~~~-~~~~~l 68 (760)
.|+||||+|+.+..=.... .+.++..-.. .....+...++++.++.+.. .+-. .+... .+.+.+
T Consensus 48 SG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARAL 124 (268)
T COG4608 48 SGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARAL 124 (268)
T ss_pred CCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHH
Confidence 5999999999999765432 3333333211 22334455666777664332 1111 11112 233333
Q ss_pred HcCCcEEEEEECCCCc
Q 048566 69 RNEKKILVVLDNIWKH 84 (760)
Q Consensus 69 ~~~~r~LlVlDdv~~~ 84 (760)
. -++-++|.|.--..
T Consensus 125 a-l~P~liV~DEpvSa 139 (268)
T COG4608 125 A-LNPKLIVADEPVSA 139 (268)
T ss_pred h-hCCcEEEecCchhh
Confidence 3 48889999986543
No 471
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=77.48 E-value=2.2 Score=38.47 Aligned_cols=30 Identities=13% Similarity=0.399 Sum_probs=22.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVS 32 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~ 32 (760)
||+||+++.+.+|.-.-. +.+...+|++.-
T Consensus 29 g~VGKssmiqryCkgifT-kdykktIgvdfl 58 (246)
T KOG4252|consen 29 GSVGKSSMIQRYCKGIFT-KDYKKTIGVDFL 58 (246)
T ss_pred CccchHHHHHHHhccccc-cccccccchhhh
Confidence 799999999999965432 234567888754
No 472
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=77.36 E-value=5.4 Score=44.56 Aligned_cols=63 Identities=22% Similarity=0.338 Sum_probs=42.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|+|||-||.+++..-..+ +|+|... +++.+- +|. .++.+..++.+-+..+++.+.||..
T Consensus 710 pGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~Ky---IGa------SEq~vR~lF~rA~~a~PCiLFFDEf 769 (952)
T KOG0735|consen 710 PGCGKTLLASAIASNSNLR-------FISVKGP----ELLSKY---IGA------SEQNVRDLFERAQSAKPCILFFDEF 769 (952)
T ss_pred CCCcHHHHHHHHHhhCCee-------EEEecCH----HHHHHH---hcc------cHHHHHHHHHHhhccCCeEEEeccc
Confidence 7999999999998774432 5666653 222221 222 2355667777777679999999998
Q ss_pred CCc
Q 048566 82 WKH 84 (760)
Q Consensus 82 ~~~ 84 (760)
+..
T Consensus 770 dSi 772 (952)
T KOG0735|consen 770 DSI 772 (952)
T ss_pred ccc
Confidence 754
No 473
>PRK10646 ADP-binding protein; Provisional
Probab=77.20 E-value=1.6 Score=39.39 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=15.1
Q ss_pred CCcHHHHHHHHHHHHhh
Q 048566 3 GIGKTTLVKKVARQAME 19 (760)
Q Consensus 3 GiGKTtLA~~~~~~~~~ 19 (760)
|.||||++|.+++...+
T Consensus 38 GaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 38 GAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCHHHHHHHHHHHcCC
Confidence 89999999999988654
No 474
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=77.20 E-value=3 Score=42.56 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
||+||||+|..++...... .+ .|.-||+..
T Consensus 9 GGVGKTTta~nLA~~La~~-G~-rVLlID~Dp 38 (290)
T CHL00072 9 GGIGKSTTSCNISIALARR-GK-KVLQIGCDP 38 (290)
T ss_pred CCCcHHHHHHHHHHHHHHC-CC-eEEEEeccC
Confidence 8999999999999887632 22 366666643
No 475
>PLN02924 thymidylate kinase
Probab=77.17 E-value=12 Score=36.40 Aligned_cols=44 Identities=9% Similarity=0.009 Sum_probs=26.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAE 46 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 46 (760)
-|+||||+|+.+++....+ ++..+.+-.-......-+..++++.
T Consensus 25 DGsGKsTq~~~L~~~l~~~-g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 25 DRSGKSTQCAKLVSFLKGL-GVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CCCCHHHHHHHHHHHHHhc-CCCceeeeCCCCCChHHHHHHHHHh
Confidence 5999999999999998743 4554433222222334444444443
No 476
>PRK05439 pantothenate kinase; Provisional
Probab=76.89 E-value=8.3 Score=39.51 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=34.4
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHH--HHHHHhCccccchhhHHHHHHHHHHHHcCCc
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQ--EIAEKLGLELREEVESSRASRIFERLRNEKK 73 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~--~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r 73 (760)
+|+||||+|+.+.........-..+.-++...-....+.+. .++..-+. ++.-+.+......+.++.|+.
T Consensus 95 ~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~--Pes~D~~~l~~~L~~Lk~G~~ 166 (311)
T PRK05439 95 VAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGF--PESYDMRALLRFLSDVKSGKP 166 (311)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCC--cccccHHHHHHHHHHHHcCCC
Confidence 69999999999988654211112344455444332222221 11111121 222234455566667776654
No 477
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=76.80 E-value=1.5 Score=41.09 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVS 32 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~ 32 (760)
||+||||+|..++... ..++-||..
T Consensus 9 gG~GKSt~a~nLA~~l------~~vlliD~D 33 (179)
T cd03110 9 GGTGKTTVTAALAALL------KNVVLADCD 33 (179)
T ss_pred CCCCHHHHHHHHHHHH------hCcEEEECC
Confidence 8999999999998776 235566654
No 478
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=76.80 E-value=5.4 Score=40.92 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=24.2
Q ss_pred CcEEEEEECCCCccccccccccccCCCCCcEEEEeeC
Q 048566 72 KKILVVLDNIWKHLDLETVGIPFGEDHKGCKLLLTAR 108 (760)
Q Consensus 72 ~r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IlvTTR 108 (760)
.+-+||+|.+.+.. -.+++.-+-..|.||||+.|--
T Consensus 351 ~~~FiIIDEaQNLT-pheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 351 PDSFIIIDEAQNLT-PHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred ccceEEEehhhccC-HHHHHHHHHhccCCCEEEEcCC
Confidence 45689999987653 1223333445889999998754
No 479
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=76.70 E-value=6.5 Score=42.79 Aligned_cols=79 Identities=20% Similarity=0.317 Sum_probs=45.1
Q ss_pred CCCcHHHHH-HHHHHHHhhhcCCCe-EEEEEecCCC-CHHHHHHHHHHHhCccc------cchhhHH------HHHHHHH
Q 048566 2 GGIGKTTLV-KKVARQAMEDKLFDM-VVFSEVSQIP-DIKRIQQEIAEKLGLEL------REEVESS------RASRIFE 66 (760)
Q Consensus 2 gGiGKTtLA-~~~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~------~~~~~~~ 66 (760)
.|+||||+| ..+.++.. -+. ++++-+.++. .+.++.+.+.+.=.... ..+.... ....+-+
T Consensus 152 ~gtGKT~lal~~I~~q~~----~dv~~V~~~IGer~~ev~~~~~~l~~~gal~~tvvV~atsd~~~~r~~ap~~a~tiAE 227 (507)
T PRK07165 152 RQTGKTHIALNTIINQKN----TNVKCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPSTSPYEQYLAPYVAMAHAE 227 (507)
T ss_pred CCCCccHHHHHHHHHhcC----CCeEEEEEEccCChHHHHHHHHHhhhcCceeeeEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 589999997 45666532 244 4788887765 45566666654321110 1111111 1233444
Q ss_pred HHHcCCcEEEEEECCCCc
Q 048566 67 RLRNEKKILVVLDNIWKH 84 (760)
Q Consensus 67 ~l~~~~r~LlVlDdv~~~ 84 (760)
+++..+.+|+|+||+...
T Consensus 228 yfrd~~dVLlv~DdLTr~ 245 (507)
T PRK07165 228 NISYNDDVLIVFDDLTKH 245 (507)
T ss_pred HHHhcCceEEEEcChHHH
Confidence 554348999999999765
No 480
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=76.68 E-value=2.2 Score=36.60 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=22.0
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
.||+||||+|..++.....+ -..+.-++...
T Consensus 7 kgG~GKTt~a~~la~~l~~~--g~~V~~id~D~ 37 (116)
T cd02034 7 KGGVGKTTIAALLARYLAEK--GKPVLAIDADP 37 (116)
T ss_pred CCCCCHHHHHHHHHHHHHHC--CCcEEEEECCc
Confidence 38999999999999887533 23455566443
No 481
>PRK00279 adk adenylate kinase; Reviewed
Probab=76.61 E-value=9.3 Score=37.03 Aligned_cols=18 Identities=33% Similarity=0.244 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
.+|.||||+|+.++....
T Consensus 8 ~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 8 PPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999987643
No 482
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=76.34 E-value=5.4 Score=37.33 Aligned_cols=49 Identities=18% Similarity=0.037 Sum_probs=26.7
Q ss_pred HHHHHHcCCcEEEEEECCCCccc---cccccccccCCCCCcEEEEeeCCHHHH
Q 048566 64 IFERLRNEKKILVVLDNIWKHLD---LETVGIPFGEDHKGCKLLLTARDRKEA 113 (760)
Q Consensus 64 ~~~~l~~~~r~LlVlDdv~~~~~---~~~l~~~~~~~~~gs~IlvTTR~~~~a 113 (760)
+...+.. ++=++++|.-...-+ .+.+...+.....+.-||++|.+.++.
T Consensus 109 laral~~-~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 109 LARILLQ-DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHhc-CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 3444443 778899999765422 122222221112355688898876543
No 483
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=76.33 E-value=5.8 Score=39.22 Aligned_cols=19 Identities=47% Similarity=0.532 Sum_probs=16.7
Q ss_pred CCCcHHHHHHHHHHHHhhh
Q 048566 2 GGIGKTTLVKKVARQAMED 20 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~ 20 (760)
+|.|||-||++|+|+-...
T Consensus 228 PGTGKTLLAKAVANqTSAT 246 (440)
T KOG0726|consen 228 PGTGKTLLAKAVANQTSAT 246 (440)
T ss_pred CCCchhHHHHHHhcccchh
Confidence 7999999999999987643
No 484
>PRK06820 type III secretion system ATPase; Validated
Probab=76.26 E-value=10 Score=40.86 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=40.7
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccc------cchh-hHH------HHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLEL------REEV-ESS------RASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~-~~~------~~~~~~~~ 67 (760)
.|+|||||++.++.... -+.++..-+.+.. .+.++.++.+..=.... ..+. ... .+..+-++
T Consensus 172 sG~GKStLl~~I~~~~~----~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~~~a~tiAEy 247 (440)
T PRK06820 172 AGVGKSTLLGMLCADSA----ADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTATTIAEY 247 (440)
T ss_pred CCCChHHHHHHHhccCC----CCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999998887542 3445555555542 23333333221100000 0011 111 12233444
Q ss_pred HH-cCCcEEEEEECCCCc
Q 048566 68 LR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~-~~~r~LlVlDdv~~~ 84 (760)
++ +|+++|+++||+...
T Consensus 248 frd~G~~VLl~~Dsltr~ 265 (440)
T PRK06820 248 FRDRGKKVLLMADSLTRY 265 (440)
T ss_pred HHHcCCCEEEEccchhHH
Confidence 43 479999999998654
No 485
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=76.24 E-value=12 Score=37.94 Aligned_cols=40 Identities=5% Similarity=0.015 Sum_probs=28.8
Q ss_pred CCcEEEEEECCCCc--cccccccccccCCCCCcEEEEeeCCH
Q 048566 71 EKKILVVLDNIWKH--LDLETVGIPFGEDHKGCKLLLTARDR 110 (760)
Q Consensus 71 ~~r~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IlvTTR~~ 110 (760)
+++=++|+|+++.. +.++.+...+.....+..+|++|.+.
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCCh
Confidence 45668889999876 45677766666666677777777775
No 486
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=76.16 E-value=1.9 Score=39.12 Aligned_cols=18 Identities=39% Similarity=0.418 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
++|.||||+|+.++....
T Consensus 7 ~~GsGKstla~~la~~l~ 24 (154)
T cd00464 7 MMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 579999999999988763
No 487
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=76.14 E-value=3.6 Score=39.83 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=27.9
Q ss_pred CCcEEEEEECCCCcccc---c----cccccccCC-CCCcEEEEeeCCHHHHHHHH
Q 048566 71 EKKILVVLDNIWKHLDL---E----TVGIPFGED-HKGCKLLLTARDRKEAWRLF 117 (760)
Q Consensus 71 ~~r~LlVlDdv~~~~~~---~----~l~~~~~~~-~~gs~IlvTTR~~~~a~~Lf 117 (760)
.++-|+++|......+. . .+...+... ..+..+|+||-+.+.+..+.
T Consensus 107 ~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 107 TRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 47899999998754321 1 122222222 23457999999876665554
No 488
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=76.13 E-value=3.6 Score=44.12 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=26.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIK 38 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 38 (760)
||+||||+|.+++......+ ..|+-||.....++.
T Consensus 114 GGvGKTT~a~nLA~~La~~G--~rVLlID~DpQ~~ls 148 (387)
T TIGR03453 114 GGSGKTTTAAHLAQYLALRG--YRVLAIDLDPQASLS 148 (387)
T ss_pred CCcCHHHHHHHHHHHHHhcC--CCEEEEecCCCCCHH
Confidence 89999999999998776322 357788877655543
No 489
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=76.05 E-value=4.2 Score=43.68 Aligned_cols=79 Identities=23% Similarity=0.368 Sum_probs=40.8
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC-CHHHHHHHHHHHhCccc-------cchhhHH------HHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP-DIKRIQQEIAEKLGLEL-------REEVESS------RASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~~~ 67 (760)
.|+|||||++.+++... .+.++..-+.... .+.++.+++...=.... .++.... .+..+-++
T Consensus 184 sG~GKTTLL~~Ia~~~~----~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~~~~a~tiAEy 259 (455)
T PRK07960 184 SGVGKSVLLGMMARYTQ----ADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAED 259 (455)
T ss_pred CCCCccHHHHHHhCCCC----CCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 59999999999987643 2333333343332 44444444432111000 0111111 11223333
Q ss_pred HH-cCCcEEEEEECCCCc
Q 048566 68 LR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~-~~~r~LlVlDdv~~~ 84 (760)
++ +|+++|+++||+...
T Consensus 260 frd~G~~Vll~~DslTr~ 277 (455)
T PRK07960 260 FRDRGQHVLLIMDSLTRY 277 (455)
T ss_pred HHHcCCCeEEEecchhHH
Confidence 33 379999999998654
No 490
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=76.00 E-value=9.4 Score=41.16 Aligned_cols=79 Identities=23% Similarity=0.365 Sum_probs=42.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC-CCCHHHHHHHHHHHhCccc------cchh-hH------HHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ-IPDIKRIQQEIAEKLGLEL------REEV-ES------SRASRIFER 67 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~------~~~~-~~------~~~~~~~~~ 67 (760)
.|+|||||.+.++.... .+....+-+.. ...+.+..++....-.... ..+. .. ..+..+-++
T Consensus 154 sG~GKStLl~~I~~~~~----~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE~ 229 (422)
T TIGR02546 154 AGVGKSTLLGMIARGAS----ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAEY 229 (422)
T ss_pred CCCChHHHHHHHhCCCC----CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHHHHHHHHHH
Confidence 59999999999998653 23333344443 3345555544443211110 0011 11 112223333
Q ss_pred HH-cCCcEEEEEECCCCc
Q 048566 68 LR-NEKKILVVLDNIWKH 84 (760)
Q Consensus 68 l~-~~~r~LlVlDdv~~~ 84 (760)
++ +++++|+++|++...
T Consensus 230 f~~~g~~Vl~~~Dsltr~ 247 (422)
T TIGR02546 230 FRDQGKRVLLMMDSLTRF 247 (422)
T ss_pred HHHCCCcEEEEEeCchHH
Confidence 32 479999999999754
No 491
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=76.00 E-value=2.9 Score=41.91 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=21.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQ 33 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~ 33 (760)
||+||||+|..++.....+ .+ .++-||+..
T Consensus 11 GGvGKTt~a~~lA~~la~~-g~-~vlliD~D~ 40 (261)
T TIGR01968 11 GGVGKTTTTANLGTALARL-GK-KVVLIDADI 40 (261)
T ss_pred CCccHHHHHHHHHHHHHHc-CC-eEEEEECCC
Confidence 8999999999999877632 22 455666543
No 492
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=75.89 E-value=5.3 Score=39.61 Aligned_cols=62 Identities=31% Similarity=0.363 Sum_probs=39.6
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHcCCcEEEEEECC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKLGLELREEVESSRASRIFERLRNEKKILVVLDNI 81 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~r~LlVlDdv 81 (760)
+|.||+-||++|+...... |.+||... +.....+. .+..+..+++--++.|+-.|.+|.|
T Consensus 175 PGTGKSYLAKAVATEAnST-------FFSvSSSD--------LvSKWmGE-----SEkLVknLFemARe~kPSIIFiDEi 234 (439)
T KOG0739|consen 175 PGTGKSYLAKAVATEANST-------FFSVSSSD--------LVSKWMGE-----SEKLVKNLFEMARENKPSIIFIDEI 234 (439)
T ss_pred CCCcHHHHHHHHHhhcCCc-------eEEeehHH--------HHHHHhcc-----HHHHHHHHHHHHHhcCCcEEEeehh
Confidence 7999999999999886522 34555431 22222221 2234555666556679999999998
Q ss_pred CC
Q 048566 82 WK 83 (760)
Q Consensus 82 ~~ 83 (760)
+.
T Consensus 235 Ds 236 (439)
T KOG0739|consen 235 DS 236 (439)
T ss_pred hh
Confidence 63
No 493
>PTZ00301 uridine kinase; Provisional
Probab=75.72 E-value=1.9 Score=41.54 Aligned_cols=17 Identities=29% Similarity=0.583 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAM 18 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (760)
+|.||||+|+.+.+...
T Consensus 12 SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 12 SGSGKSSLSTNIVSELM 28 (210)
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 69999999999988764
No 494
>CHL00206 ycf2 Ycf2; Provisional
Probab=75.67 E-value=18 Score=45.82 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=16.0
Q ss_pred CCCcHHHHHHHHHHHHhh
Q 048566 2 GGIGKTTLVKKVARQAME 19 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~ 19 (760)
+|.|||.||++++.+..+
T Consensus 1639 PGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1639 IGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCCHHHHHHHHHHhcCC
Confidence 799999999999998653
No 495
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=75.66 E-value=1.9 Score=40.54 Aligned_cols=16 Identities=44% Similarity=0.432 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHHHHH
Q 048566 2 GGIGKTTLVKKVARQA 17 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (760)
+|.||||+|+.++...
T Consensus 8 sgsGKTtla~~l~~~~ 23 (187)
T cd02024 8 TNSGKTTLAKLLQRIL 23 (187)
T ss_pred CCCCHHHHHHHHHHHc
Confidence 6999999999999874
No 496
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=75.61 E-value=12 Score=40.65 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCCCHHHHHHHHHHHh
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIPDIKRIQQEIAEKL 48 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l 48 (760)
+|+|||++|..++.+...+.. ..++|++.. -+..++...++...
T Consensus 203 pg~GKT~~al~ia~~~a~~~g-~~v~~fSlE--m~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 203 PSMGKTTLALNIAENVALREG-KPVLFFSLE--MSAEQLGERLLASK 246 (421)
T ss_pred CCCCHHHHHHHHHHHHHHhCC-CcEEEEECC--CCHHHHHHHHHHHH
Confidence 799999999999977653333 356677644 35666666666543
No 497
>PRK06547 hypothetical protein; Provisional
Probab=75.60 E-value=2 Score=39.86 Aligned_cols=17 Identities=41% Similarity=0.522 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHHH
Q 048566 1 MGGIGKTTLVKKVARQA 17 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (760)
.+|.||||+|+.+.+..
T Consensus 23 ~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 23 RSGSGKTTLAGALAART 39 (172)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 37999999999999874
No 498
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=75.55 E-value=7.5 Score=43.40 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=22.0
Q ss_pred CCCcHHHHHHHHHHHHhhhcCCCeEEEEEecCCC
Q 048566 2 GGIGKTTLVKKVARQAMEDKLFDMVVFSEVSQIP 35 (760)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~~~~ 35 (760)
.|+|||++|+.+.+.... .-...+.|++....
T Consensus 219 ~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~ 250 (509)
T PRK05022 219 TGVGKELVARAIHAASPR--ADKPLVYLNCAALP 250 (509)
T ss_pred CCccHHHHHHHHHHhCCc--CCCCeEEEEcccCC
Confidence 599999999999987431 12245667766543
No 499
>PRK13946 shikimate kinase; Provisional
Probab=75.55 E-value=2 Score=40.50 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 048566 1 MGGIGKTTLVKKVARQAM 18 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (760)
|+|+||||+|+.+++...
T Consensus 18 ~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 18 LMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 689999999999998864
No 500
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=75.50 E-value=3.3 Score=42.96 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=21.8
Q ss_pred CCCCcHHHHHHHHHHHHhhhcCCCeEEEEEec
Q 048566 1 MGGIGKTTLVKKVARQAMEDKLFDMVVFSEVS 32 (760)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~F~~~~wv~~~ 32 (760)
++|.||||+|+.+.+....+..+ .+.+++..
T Consensus 7 l~GaGKST~~~~l~~~l~~~~g~-~v~~~~~D 37 (340)
T TIGR03575 7 LPAAGKSTLARSLSATLRRERGW-AVAVITYD 37 (340)
T ss_pred CCCCCHHHHHHHHHHHHHhccCC-eEEEEccc
Confidence 57999999999999887533333 35555543
Done!